AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576280 MtrunA17_Chr8g0393061 99.658 292 1 0 1 292 1 292 0.0 597
Msa0576280 MtrunA17_Chr8g0349601 76.289 291 56 3 3 292 2 280 5.05e-160 446
Msa0576280 MtrunA17_Chr5g0402101 50.000 110 52 2 185 292 107 215 3.41e-26 102
Msa0576280 MtrunA17_Chr4g0042151 38.462 78 48 0 213 290 46 123 3.80e-11 60.8
Msa0576280 MtrunA17_Chr8g0344491 42.857 77 44 0 212 288 148 224 4.96e-11 62.8
Msa0576280 MtrunA17_Chr1g0190351 36.842 76 48 0 215 290 318 393 7.36e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576280 AT3G11400.1 72.973 296 74 5 1 292 1 294 8.98e-156 436
Msa0576280 AT3G11400.2 66.873 323 74 5 1 292 1 321 1.21e-150 424
Msa0576280 AT5G06000.1 64.626 294 93 6 1 291 1 286 2.01e-132 378
Msa0576280 AT1G54080.1 41.111 90 50 1 206 292 140 229 6.85e-12 65.9
Msa0576280 AT3G14100.1 41.111 90 50 1 206 292 136 225 9.75e-12 65.5
Msa0576280 AT1G54080.2 40.426 94 49 2 206 292 140 233 2.01e-11 64.3

Find 136 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATGCTTAGGTTGTTCT+TGG 0.243434 4_1:+80337816 None:intergenic
CAATAAAGGTGCTGTTCTTA+TGG 0.252283 4_1:-80338291 Msa0576280:CDS
GCGCCGTTGAGCGCCGTTCC+TGG 0.290623 4_1:-80338741 Msa0576280:CDS
GTTGCAACAGATGCTGCTCC+TGG 0.291109 4_1:-80338173 Msa0576280:CDS
TTATGATAATCAGTATTATA+AGG 0.306122 4_1:-80337653 Msa0576280:three_prime_UTR
ATTCGATGATGATGGTAATA+AGG 0.312148 4_1:-80338821 Msa0576280:CDS
GACAGTGGGTCAGCAGTCTT+TGG 0.317010 4_1:+80338320 None:intergenic
GACTTCAAGGTGTCCATATA+AGG 0.326137 4_1:-80338234 Msa0576280:CDS
CGGAAAAGCTCAAGCAAATC+AGG 0.333826 4_1:+80338008 None:intergenic
ATCAACAAACTCAATGGATA+TGG 0.334085 4_1:-80337876 Msa0576280:CDS
CCAATGCTTAGGTTGTTCTT+GGG 0.335891 4_1:+80337817 None:intergenic
GTGATAGGTCCTGATGAAAA+TGG 0.346524 4_1:-80338868 Msa0576280:CDS
TCACCTGACGTGGTGGTAAC+AGG 0.357484 4_1:+80338887 None:intergenic
TTATGGTATGCAGGACTTGC+GGG 0.371975 4_1:-80338274 Msa0576280:CDS
GAAGCTAAGGTGGGGAGAAT+TGG 0.373757 4_1:-80338938 Msa0576280:CDS
AAGAAACAAACAGGCAGCTT+AGG 0.376324 4_1:-80339017 Msa0576280:five_prime_UTR
ACGCGCGTTGGCAAGTTTGC+GGG 0.393158 4_1:+80338774 None:intergenic
GTTTACTCAAAATTGCTTGT+TGG 0.394568 4_1:-80337627 Msa0576280:three_prime_UTR
GGAAGACGATGGCGAAGATC+TGG 0.395348 4_1:-80338914 Msa0576280:CDS
AGACATGGCGGCGGCAATTC+AGG 0.395457 4_1:-80338971 Msa0576280:exon
CCACTGTCTCAATTCAATAA+AGG 0.396074 4_1:-80338305 Msa0576280:CDS
GCTTCAGCTGCCTCAGCAAA+GGG 0.410110 4_1:-80338149 Msa0576280:CDS
TGATAATAATTAGTATTATG+AGG 0.413976 4_1:-80337600 Msa0576280:three_prime_UTR
AACAGAACAAAGAAACAAAC+AGG 0.416490 4_1:-80339026 Msa0576280:five_prime_UTR
GGCGGCAATTCAGGCTGAAC+CGG 0.417180 4_1:-80338962 Msa0576280:CDS
TTGCAACAGATGCTGCTCCT+GGG 0.430137 4_1:-80338172 Msa0576280:CDS
CGCCGTTCCTGGCCTAAGTT+CGG 0.430777 4_1:-80338730 Msa0576280:CDS
GGCTTCAGCTGCCTCAGCAA+AGG 0.431088 4_1:-80338150 Msa0576280:CDS
TCTGTTCTGTTCTGTTCCAC+TGG 0.431115 4_1:+80339048 None:intergenic
GGAGCAGCATCTGTTGCAAC+AGG 0.435145 4_1:+80338176 None:intergenic
ATGCAGGACTTGCGGGAAGA+AGG 0.440149 4_1:-80338267 Msa0576280:CDS
GACGCGCGTTGGCAAGTTTG+CGG 0.443758 4_1:+80338773 None:intergenic
ACTGGCATGAGTAGGGGCTT+TGG 0.446792 4_1:-80337939 Msa0576280:CDS
GCTTTGTGAACTTTGTTAGC+AGG 0.448198 4_1:-80337917 Msa0576280:CDS
TCCTCTCCGCACCAGCTCTC+AGG 0.449264 4_1:+80338108 None:intergenic
ATAATTAGTATTATGAGGAT+TGG 0.449313 4_1:-80337595 Msa0576280:three_prime_UTR
CGTCGGTGCCCGCCTCACTA+TGG 0.453711 4_1:-80338689 Msa0576280:CDS
GGGTGGCCCATTCAACTCTC+AGG 0.454110 4_1:+80337838 None:intergenic
GCTGAGGCAGCTGAAGCCCC+AGG 0.456235 4_1:+80338155 None:intergenic
TATTATGAGGATTGGTTGCA+TGG 0.457193 4_1:-80337587 Msa0576280:three_prime_UTR
GAACGATGAGAATTCTGTTC+GGG 0.459314 4_1:-80338060 Msa0576280:CDS
TTTCCTGTTACCACCACGTC+AGG 0.468496 4_1:-80338890 Msa0576280:CDS
GGCTGTGCGAGATCCTTATA+TGG 0.469555 4_1:+80338221 None:intergenic
AGTCTTTGGATCCTCCTTGT+TGG 0.470984 4_1:+80338334 None:intergenic
AGATGGATGGATGACTGGAT+TGG 0.472250 4_1:+80339076 None:intergenic
GCTGGTGCGGAGAGGACTAC+TGG 0.480564 4_1:-80338101 Msa0576280:CDS
CTGAACCGGCGAAGCTAAGG+TGG 0.487198 4_1:-80338948 Msa0576280:CDS
CTGATGAAAATGGAATCAAA+AGG 0.493183 4_1:-80338858 Msa0576280:CDS
CCTTGTGTCCTCCGAGAGGT+TGG 0.493283 4_1:+80338034 None:intergenic
AGAAACAAACAGGCAGCTTA+GGG 0.494303 4_1:-80339016 Msa0576280:five_prime_UTR
TGCTTAGGTTGTTCTTGGGG+TGG 0.495372 4_1:+80337821 None:intergenic
TCTCATCCTGAGAGTTGAAT+GGG 0.497673 4_1:-80337844 Msa0576280:CDS
CCCAAGAACAACCTAAGCAT+TGG 0.499523 4_1:-80337817 Msa0576280:exon
GCGGGAAGAAGGGTGATCAT+TGG 0.499819 4_1:-80338256 Msa0576280:CDS
GTGCTGTTCTTATGGTATGC+AGG 0.503047 4_1:-80338283 Msa0576280:CDS
CCAAGAACAACCTAAGCATT+GGG 0.503564 4_1:-80337816 Msa0576280:exon
ATCTCATCCTGAGAGTTGAA+TGG 0.503653 4_1:-80337845 Msa0576280:CDS
TCAAAAGACTGGCATGAGTA+GGG 0.504440 4_1:-80337946 Msa0576280:CDS
TTCAACACAAAGGAAATAGA+TGG 0.506863 4_1:+80337724 None:intergenic
TTACCACCACGTCAGGTGAT+AGG 0.508065 4_1:-80338883 Msa0576280:CDS
TCTCCCCACCTTAGCTTCGC+CGG 0.508727 4_1:+80338943 None:intergenic
TGCAGGACTTGCGGGAAGAA+GGG 0.508910 4_1:-80338266 Msa0576280:CDS
CTCAAGAGCACCCAATGCTT+AGG 0.508916 4_1:+80337806 None:intergenic
GTTGCTATTGATCAAAAGAC+TGG 0.519323 4_1:-80337957 Msa0576280:CDS
CAATGCTTAGGTTGTTCTTG+GGG 0.520594 4_1:+80337818 None:intergenic
AGGGTGATCATTGGACTTCA+AGG 0.520801 4_1:-80338247 Msa0576280:CDS
CTCGAACGCCCCAAACCACT+TGG 0.521196 4_1:-80338646 Msa0576280:intron
AGGGCTATCAACAAACTCAA+TGG 0.522389 4_1:-80337882 Msa0576280:CDS
GAGTACAAATTCGATGATGA+TGG 0.524262 4_1:-80338829 Msa0576280:CDS
AGGCTGAACCGGCGAAGCTA+AGG 0.524816 4_1:-80338951 Msa0576280:CDS
TCCGCACCAGCTCTCAGGCT+AGG 0.528088 4_1:+80338113 None:intergenic
GGTTTATCAACAAAAGTCTC+AGG 0.531499 4_1:+80338197 None:intergenic
TACTGACAGCACCAAAAGGC+CGG 0.531711 4_1:+80337988 None:intergenic
CTTATGGTATGCAGGACTTG+CGG 0.534636 4_1:-80338275 Msa0576280:CDS
CTTTGTGAACTTTGTTAGCA+GGG 0.538694 4_1:-80337916 Msa0576280:CDS
GGAACGATGAGAATTCTGTT+CGG 0.539699 4_1:-80338061 Msa0576280:CDS
GCGTTCGAGAAGGATCTCTT+CGG 0.539858 4_1:+80338660 None:intergenic
TGCAACAGATGCTGCTCCTG+GGG 0.541734 4_1:-80338171 Msa0576280:CDS
GAAATAGATGGTCCTGAACT+CGG 0.544141 4_1:+80337736 None:intergenic
GGCGTCTCCGAACTTAGGCC+AGG 0.544227 4_1:+80338723 None:intergenic
GCTAAGGTGGGGAGAATTGG+AGG 0.546676 4_1:-80338935 Msa0576280:CDS
TGATGAAAATGGAATCAAAA+GGG 0.546960 4_1:-80338857 Msa0576280:CDS
TAAGAAGATGGATGGATGAC+TGG 0.548864 4_1:+80339071 None:intergenic
GGCACCGACGTCTTCATGAA+CGG 0.554768 4_1:+80338702 None:intergenic
ACCCTACTGACAGCACCAAA+AGG 0.555974 4_1:+80337984 None:intergenic
AGGCCAGGAACGGCGCTCAA+CGG 0.556345 4_1:+80338738 None:intergenic
GCGTTTGCTGAGACGCGCGT+TGG 0.556548 4_1:+80338762 None:intergenic
CCAACCTCTCGGAGGACACA+AGG 0.558509 4_1:-80338034 Msa0576280:CDS
GGTGGAGACCATAGTGAGGC+GGG 0.566425 4_1:+80338681 None:intergenic
CTGTTCCACTGGTAAGAAGA+TGG 0.569284 4_1:+80339059 None:intergenic
GTGGTTTGGGGCGTTCGAGA+AGG 0.575414 4_1:+80338650 None:intergenic
CTCCGAACTTAGGCCAGGAA+CGG 0.576631 4_1:+80338728 None:intergenic
ATCAAAAGACTGGCATGAGT+AGG 0.579916 4_1:-80337947 Msa0576280:CDS
GGCAAGTTTGCGGGTGCGAG+TGG 0.586323 4_1:+80338783 None:intergenic
TCCTAGCCTGAGAGCTGGTG+CGG 0.588822 4_1:-80338114 Msa0576280:CDS
TGAACCGGCGAAGCTAAGGT+GGG 0.591273 4_1:-80338947 Msa0576280:CDS
TCCATCCATCTTCTTACCAG+TGG 0.592395 4_1:-80339064 Msa0576280:five_prime_UTR
AGACTTCCGGAGATAAGAGA+GGG 0.599062 4_1:+80337774 None:intergenic
GATTGGTTGCATGGTTCACA+AGG 0.600264 4_1:-80337578 Msa0576280:three_prime_UTR
TGAACGGCGTCTCCGAACTT+AGG 0.601313 4_1:+80338718 None:intergenic
CTTTATTGAATTGAGACAGT+GGG 0.603664 4_1:+80338306 None:intergenic
CTGGCTCTGACATGAGGCGG+AGG 0.610847 4_1:-80338082 Msa0576280:CDS
GTACCTCCTAGCCTGAGAGC+TGG 0.611149 4_1:-80338119 Msa0576280:CDS
TCCACTGGTAAGAAGATGGA+TGG 0.613236 4_1:+80339063 None:intergenic
CAAAAGACTGGCATGAGTAG+GGG 0.615375 4_1:-80337945 Msa0576280:CDS
CGGTGGAGACCATAGTGAGG+CGG 0.621472 4_1:+80338680 None:intergenic
TTCGAGAAGGATCTCTTCGG+TGG 0.622805 4_1:+80338663 None:intergenic
GCCTGAGAGCTGGTGCGGAG+AGG 0.623849 4_1:-80338109 Msa0576280:CDS
TACATATGCACCCTTTGCTG+AGG 0.623928 4_1:+80338139 None:intergenic
TAGCAGGGAAGATGCTCAGA+GGG 0.624825 4_1:-80337901 Msa0576280:CDS
TGGTTGCATGGTTCACAAGG+TGG 0.625161 4_1:-80337575 Msa0576280:three_prime_UTR
CAACCTCTCGGAGGACACAA+GGG 0.627480 4_1:-80338033 Msa0576280:CDS
GAACCGGCGAAGCTAAGGTG+GGG 0.627679 4_1:-80338946 Msa0576280:CDS
GGACTACTGGCTCTGACATG+AGG 0.632778 4_1:-80338088 Msa0576280:CDS
TGTTCGGGTAACCAACCTCT+CGG 0.633411 4_1:-80338045 Msa0576280:CDS
AATCTAATCAGACATGGCGG+CGG 0.647531 4_1:-80338980 Msa0576280:exon
TCTTCTAATCTAATCAGACA+TGG 0.651706 4_1:-80338986 Msa0576280:exon
GCACCAGCTCTCAGGCTAGG+AGG 0.652161 4_1:+80338116 None:intergenic
AATAATACAATTCAACACAA+AGG 0.653042 4_1:+80337714 None:intergenic
TAGACTTCCGGAGATAAGAG+AGG 0.655809 4_1:+80337773 None:intergenic
CCTTTATTGAATTGAGACAG+TGG 0.657041 4_1:+80338305 None:intergenic
CTACTGGCTCTGACATGAGG+CGG 0.663022 4_1:-80338085 Msa0576280:CDS
GCTCCCTTGTGTCCTCCGAG+AGG 0.679337 4_1:+80338030 None:intergenic
GGACCTATCACCTGACGTGG+TGG 0.679711 4_1:+80338880 None:intergenic
TTATCAACAAAAGTCTCAGG+CGG 0.681859 4_1:+80338200 None:intergenic
TTAGCAGGGAAGATGCTCAG+AGG 0.686366 4_1:-80337902 Msa0576280:CDS
ATCAACAACAGGTTCCAACA+AGG 0.686562 4_1:-80338348 Msa0576280:intron
GGAGAATTGGAGGAAGACGA+TGG 0.696314 4_1:-80338925 Msa0576280:CDS
TCAGGACCTATCACCTGACG+TGG 0.706707 4_1:+80338877 None:intergenic
AACAACAGGTTCCAACAAGG+AGG 0.706807 4_1:-80338345 Msa0576280:intron
ACTTCCGGAGATAAGAGAGG+GGG 0.712733 4_1:+80337776 None:intergenic
GACTTCCGGAGATAAGAGAG+GGG 0.719181 4_1:+80337775 None:intergenic
CTTCGGTGGAGACCATAGTG+AGG 0.720155 4_1:+80338677 None:intergenic
TCGGGTAACCAACCTCTCGG+AGG 0.730211 4_1:-80338042 Msa0576280:CDS
GACGCCGTTCATGAAGACGT+CGG 0.745318 4_1:-80338706 Msa0576280:CDS
TCTAATCTAATCAGACATGG+CGG 0.748948 4_1:-80338983 Msa0576280:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGATAATCAGTATTATA+AGG - chr4_1:80338962-80338981 Msa0576280:CDS 15.0%
!! TGATAATAATTAGTATTATG+AGG - chr4_1:80339015-80339034 Msa0576280:five_prime_UTR 15.0%
!! TTATGATAATCAGTATTATA+AGG - chr4_1:80338962-80338981 Msa0576280:CDS 15.0%
!! TGATAATAATTAGTATTATG+AGG - chr4_1:80339015-80339034 Msa0576280:five_prime_UTR 15.0%
!! AATAATACAATTCAACACAA+AGG + chr4_1:80338904-80338923 None:intergenic 20.0%
!! ATAATTAGTATTATGAGGAT+TGG - chr4_1:80339020-80339039 Msa0576280:five_prime_UTR 20.0%
!!! CATTCTTTGATTTTTATACT+GGG - chr4_1:80339063-80339082 Msa0576280:five_prime_UTR 20.0%
!! AATAATACAATTCAACACAA+AGG + chr4_1:80338904-80338923 None:intergenic 20.0%
!! ATAATTAGTATTATGAGGAT+TGG - chr4_1:80339020-80339039 Msa0576280:five_prime_UTR 20.0%
!!! CATTCTTTGATTTTTATACT+GGG - chr4_1:80339063-80339082 Msa0576280:five_prime_UTR 20.0%
! TGATGAAAATGGAATCAAAA+GGG - chr4_1:80337758-80337777 Msa0576280:three_prime_UTR 25.0%
!! GTAATTCATCATCTAAAGTA+AGG + chr4_1:80338136-80338155 None:intergenic 25.0%
! TACTTTAGATGATGAATTAC+TGG - chr4_1:80338136-80338155 Msa0576280:CDS 25.0%
! ACTTTAGATGATGAATTACT+GGG - chr4_1:80338137-80338156 Msa0576280:CDS 25.0%
!!! GCATTCTTTGATTTTTATAC+TGG - chr4_1:80339062-80339081 Msa0576280:five_prime_UTR 25.0%
! TGATGAAAATGGAATCAAAA+GGG - chr4_1:80337758-80337777 Msa0576280:three_prime_UTR 25.0%
!! GTAATTCATCATCTAAAGTA+AGG + chr4_1:80338136-80338155 None:intergenic 25.0%
! TACTTTAGATGATGAATTAC+TGG - chr4_1:80338136-80338155 Msa0576280:CDS 25.0%
! ACTTTAGATGATGAATTACT+GGG - chr4_1:80338137-80338156 Msa0576280:CDS 25.0%
!!! GCATTCTTTGATTTTTATAC+TGG - chr4_1:80339062-80339081 Msa0576280:five_prime_UTR 25.0%
AACAGAACAAAGAAACAAAC+AGG - chr4_1:80337589-80337608 Msa0576280:three_prime_UTR 30.0%
TCTTCTAATCTAATCAGACA+TGG - chr4_1:80337629-80337648 Msa0576280:three_prime_UTR 30.0%
!! CTTTTGATTCCATTTTCATC+AGG + chr4_1:80337759-80337778 None:intergenic 30.0%
CTGATGAAAATGGAATCAAA+AGG - chr4_1:80337757-80337776 Msa0576280:three_prime_UTR 30.0%
!! ATTCGATGATGATGGTAATA+AGG - chr4_1:80337794-80337813 Msa0576280:three_prime_UTR 30.0%
!! TAAAGAGAAAAAGTACCAAG+TGG + chr4_1:80337987-80338006 None:intergenic 30.0%
! TTCATCATCTAAAGTAAGGA+AGG + chr4_1:80338132-80338151 None:intergenic 30.0%
CTTTATTGAATTGAGACAGT+GGG + chr4_1:80338312-80338331 None:intergenic 30.0%
ATCAACAAACTCAATGGATA+TGG - chr4_1:80338739-80338758 Msa0576280:CDS 30.0%
TTCAACACAAAGGAAATAGA+TGG + chr4_1:80338894-80338913 None:intergenic 30.0%
GTTTACTCAAAATTGCTTGT+TGG - chr4_1:80338988-80339007 Msa0576280:exon 30.0%
GGAAGAGAAAAATATGAAAG+TGG - chr4_1:80339084-80339103 Msa0576280:five_prime_UTR 30.0%
AACAGAACAAAGAAACAAAC+AGG - chr4_1:80337589-80337608 Msa0576280:three_prime_UTR 30.0%
TCTTCTAATCTAATCAGACA+TGG - chr4_1:80337629-80337648 Msa0576280:three_prime_UTR 30.0%
!! CTTTTGATTCCATTTTCATC+AGG + chr4_1:80337759-80337778 None:intergenic 30.0%
CTGATGAAAATGGAATCAAA+AGG - chr4_1:80337757-80337776 Msa0576280:three_prime_UTR 30.0%
!! ATTCGATGATGATGGTAATA+AGG - chr4_1:80337794-80337813 Msa0576280:three_prime_UTR 30.0%
!! TAAAGAGAAAAAGTACCAAG+TGG + chr4_1:80337987-80338006 None:intergenic 30.0%
! TTCATCATCTAAAGTAAGGA+AGG + chr4_1:80338132-80338151 None:intergenic 30.0%
CTTTATTGAATTGAGACAGT+GGG + chr4_1:80338312-80338331 None:intergenic 30.0%
ATCAACAAACTCAATGGATA+TGG - chr4_1:80338739-80338758 Msa0576280:CDS 30.0%
TTCAACACAAAGGAAATAGA+TGG + chr4_1:80338894-80338913 None:intergenic 30.0%
GTTTACTCAAAATTGCTTGT+TGG - chr4_1:80338988-80339007 Msa0576280:exon 30.0%
GGAAGAGAAAAATATGAAAG+TGG - chr4_1:80339084-80339103 Msa0576280:five_prime_UTR 30.0%
!! GATGACTGGATTGGATTTTT+GGG + chr4_1:80337533-80337552 None:intergenic 35.0%
TCTAATCTAATCAGACATGG+CGG - chr4_1:80337632-80337651 Msa0576280:three_prime_UTR 35.0%
GAGTACAAATTCGATGATGA+TGG - chr4_1:80337786-80337805 Msa0576280:three_prime_UTR 35.0%
!! AAAAAGTACCAAGTGGTTTG+GGG + chr4_1:80337980-80337999 None:intergenic 35.0%
!! GAAAAAGTACCAAGTGGTTT+GGG + chr4_1:80337981-80338000 None:intergenic 35.0%
!! AGAAAAAGTACCAAGTGGTT+TGG + chr4_1:80337982-80338001 None:intergenic 35.0%
CACAATCACACAAGAATGTT+CGG - chr4_1:80338087-80338106 Msa0576280:CDS 35.0%
AACCTAGTCTAGTCTATTGT+AGG - chr4_1:80338213-80338232 Msa0576280:CDS 35.0%
ATCCTACAATAGACTAGACT+AGG + chr4_1:80338218-80338237 None:intergenic 35.0%
TCATGATCTGTATCAACAAC+AGG - chr4_1:80338256-80338275 Msa0576280:CDS 35.0%
CCTTTATTGAATTGAGACAG+TGG + chr4_1:80338313-80338332 None:intergenic 35.0%
CCACTGTCTCAATTCAATAA+AGG - chr4_1:80338310-80338329 Msa0576280:CDS 35.0%
!! CAATAAAGGTGCTGTTCTTA+TGG - chr4_1:80338324-80338343 Msa0576280:CDS 35.0%
TTATCAACAAAAGTCTCAGG+CGG + chr4_1:80338418-80338437 None:intergenic 35.0%
GGTTTATCAACAAAAGTCTC+AGG + chr4_1:80338421-80338440 None:intergenic 35.0%
! GTTGCTATTGATCAAAAGAC+TGG - chr4_1:80338658-80338677 Msa0576280:CDS 35.0%
CTTTGTGAACTTTGTTAGCA+GGG - chr4_1:80338699-80338718 Msa0576280:CDS 35.0%
TACAAAAACTGGTAGACTTC+CGG + chr4_1:80338857-80338876 None:intergenic 35.0%
TGAACTCGGATTACAAAAAC+TGG + chr4_1:80338868-80338887 None:intergenic 35.0%
! AGTTTTTGTAATCCGAGTTC+AGG - chr4_1:80338867-80338886 Msa0576280:CDS 35.0%
! GTTTTCTCAAGATCACTTGT+TGG - chr4_1:80338935-80338954 Msa0576280:CDS 35.0%
!! TATTATGAGGATTGGTTGCA+TGG - chr4_1:80339028-80339047 Msa0576280:five_prime_UTR 35.0%
!! GATGACTGGATTGGATTTTT+GGG + chr4_1:80337533-80337552 None:intergenic 35.0%
TCTAATCTAATCAGACATGG+CGG - chr4_1:80337632-80337651 Msa0576280:three_prime_UTR 35.0%
GAGTACAAATTCGATGATGA+TGG - chr4_1:80337786-80337805 Msa0576280:three_prime_UTR 35.0%
!! AAAAAGTACCAAGTGGTTTG+GGG + chr4_1:80337980-80337999 None:intergenic 35.0%
!! GAAAAAGTACCAAGTGGTTT+GGG + chr4_1:80337981-80338000 None:intergenic 35.0%
!! AGAAAAAGTACCAAGTGGTT+TGG + chr4_1:80337982-80338001 None:intergenic 35.0%
CACAATCACACAAGAATGTT+CGG - chr4_1:80338087-80338106 Msa0576280:CDS 35.0%
AACCTAGTCTAGTCTATTGT+AGG - chr4_1:80338213-80338232 Msa0576280:CDS 35.0%
ATCCTACAATAGACTAGACT+AGG + chr4_1:80338218-80338237 None:intergenic 35.0%
TCATGATCTGTATCAACAAC+AGG - chr4_1:80338256-80338275 Msa0576280:CDS 35.0%
CCTTTATTGAATTGAGACAG+TGG + chr4_1:80338313-80338332 None:intergenic 35.0%
CCACTGTCTCAATTCAATAA+AGG - chr4_1:80338310-80338329 Msa0576280:CDS 35.0%
!! CAATAAAGGTGCTGTTCTTA+TGG - chr4_1:80338324-80338343 Msa0576280:CDS 35.0%
TTATCAACAAAAGTCTCAGG+CGG + chr4_1:80338418-80338437 None:intergenic 35.0%
GGTTTATCAACAAAAGTCTC+AGG + chr4_1:80338421-80338440 None:intergenic 35.0%
! GTTGCTATTGATCAAAAGAC+TGG - chr4_1:80338658-80338677 Msa0576280:CDS 35.0%
CTTTGTGAACTTTGTTAGCA+GGG - chr4_1:80338699-80338718 Msa0576280:CDS 35.0%
TACAAAAACTGGTAGACTTC+CGG + chr4_1:80338857-80338876 None:intergenic 35.0%
TGAACTCGGATTACAAAAAC+TGG + chr4_1:80338868-80338887 None:intergenic 35.0%
! AGTTTTTGTAATCCGAGTTC+AGG - chr4_1:80338867-80338886 Msa0576280:CDS 35.0%
! GTTTTCTCAAGATCACTTGT+TGG - chr4_1:80338935-80338954 Msa0576280:CDS 35.0%
!! TATTATGAGGATTGGTTGCA+TGG - chr4_1:80339028-80339047 Msa0576280:five_prime_UTR 35.0%
!! GGATGACTGGATTGGATTTT+TGG + chr4_1:80337534-80337553 None:intergenic 40.0%
TAAGAAGATGGATGGATGAC+TGG + chr4_1:80337547-80337566 None:intergenic 40.0%
AAGAAACAAACAGGCAGCTT+AGG - chr4_1:80337598-80337617 Msa0576280:three_prime_UTR 40.0%
AGAAACAAACAGGCAGCTTA+GGG - chr4_1:80337599-80337618 Msa0576280:three_prime_UTR 40.0%
GTGATAGGTCCTGATGAAAA+TGG - chr4_1:80337747-80337766 Msa0576280:three_prime_UTR 40.0%
ATCAACAACAGGTTCCAACA+AGG - chr4_1:80338267-80338286 Msa0576280:CDS 40.0%
! GACTTCAAGGTGTCCATATA+AGG - chr4_1:80338381-80338400 Msa0576280:intron 40.0%
GGAACGATGAGAATTCTGTT+CGG - chr4_1:80338554-80338573 Msa0576280:intron 40.0%
GAACGATGAGAATTCTGTTC+GGG - chr4_1:80338555-80338574 Msa0576280:intron 40.0%
!!! CTGATTTGCTTGAGCTTTTC+CGG - chr4_1:80338608-80338627 Msa0576280:intron 40.0%
ATCAAAAGACTGGCATGAGT+AGG - chr4_1:80338668-80338687 Msa0576280:CDS 40.0%
TCAAAAGACTGGCATGAGTA+GGG - chr4_1:80338669-80338688 Msa0576280:CDS 40.0%
GCTTTGTGAACTTTGTTAGC+AGG - chr4_1:80338698-80338717 Msa0576280:CDS 40.0%
AGGGCTATCAACAAACTCAA+TGG - chr4_1:80338733-80338752 Msa0576280:CDS 40.0%
ATCTCATCCTGAGAGTTGAA+TGG - chr4_1:80338770-80338789 Msa0576280:CDS 40.0%
TCTCATCCTGAGAGTTGAAT+GGG - chr4_1:80338771-80338790 Msa0576280:CDS 40.0%
! CAATGCTTAGGTTGTTCTTG+GGG + chr4_1:80338800-80338819 None:intergenic 40.0%
! CCAATGCTTAGGTTGTTCTT+GGG + chr4_1:80338801-80338820 None:intergenic 40.0%
CCAAGAACAACCTAAGCATT+GGG - chr4_1:80338799-80338818 Msa0576280:CDS 40.0%
GAAATAGATGGTCCTGAACT+CGG + chr4_1:80338882-80338901 None:intergenic 40.0%
!! GGATGACTGGATTGGATTTT+TGG + chr4_1:80337534-80337553 None:intergenic 40.0%
TAAGAAGATGGATGGATGAC+TGG + chr4_1:80337547-80337566 None:intergenic 40.0%
AAGAAACAAACAGGCAGCTT+AGG - chr4_1:80337598-80337617 Msa0576280:three_prime_UTR 40.0%
AGAAACAAACAGGCAGCTTA+GGG - chr4_1:80337599-80337618 Msa0576280:three_prime_UTR 40.0%
GTGATAGGTCCTGATGAAAA+TGG - chr4_1:80337747-80337766 Msa0576280:three_prime_UTR 40.0%
ATCAACAACAGGTTCCAACA+AGG - chr4_1:80338267-80338286 Msa0576280:CDS 40.0%
! GACTTCAAGGTGTCCATATA+AGG - chr4_1:80338381-80338400 Msa0576280:intron 40.0%
GGAACGATGAGAATTCTGTT+CGG - chr4_1:80338554-80338573 Msa0576280:intron 40.0%
GAACGATGAGAATTCTGTTC+GGG - chr4_1:80338555-80338574 Msa0576280:intron 40.0%
!!! CTGATTTGCTTGAGCTTTTC+CGG - chr4_1:80338608-80338627 Msa0576280:intron 40.0%
ATCAAAAGACTGGCATGAGT+AGG - chr4_1:80338668-80338687 Msa0576280:CDS 40.0%
TCAAAAGACTGGCATGAGTA+GGG - chr4_1:80338669-80338688 Msa0576280:CDS 40.0%
GCTTTGTGAACTTTGTTAGC+AGG - chr4_1:80338698-80338717 Msa0576280:CDS 40.0%
AGGGCTATCAACAAACTCAA+TGG - chr4_1:80338733-80338752 Msa0576280:CDS 40.0%
ATCTCATCCTGAGAGTTGAA+TGG - chr4_1:80338770-80338789 Msa0576280:CDS 40.0%
TCTCATCCTGAGAGTTGAAT+GGG - chr4_1:80338771-80338790 Msa0576280:CDS 40.0%
! CAATGCTTAGGTTGTTCTTG+GGG + chr4_1:80338800-80338819 None:intergenic 40.0%
! CCAATGCTTAGGTTGTTCTT+GGG + chr4_1:80338801-80338820 None:intergenic 40.0%
CCAAGAACAACCTAAGCATT+GGG - chr4_1:80338799-80338818 Msa0576280:CDS 40.0%
GAAATAGATGGTCCTGAACT+CGG + chr4_1:80338882-80338901 None:intergenic 40.0%
AGATGGATGGATGACTGGAT+TGG + chr4_1:80337542-80337561 None:intergenic 45.0%
TCCATCCATCTTCTTACCAG+TGG - chr4_1:80337551-80337570 Msa0576280:three_prime_UTR 45.0%
TCCACTGGTAAGAAGATGGA+TGG + chr4_1:80337555-80337574 None:intergenic 45.0%
CTGTTCCACTGGTAAGAAGA+TGG + chr4_1:80337559-80337578 None:intergenic 45.0%
TCTGTTCTGTTCTGTTCCAC+TGG + chr4_1:80337570-80337589 None:intergenic 45.0%
AATCTAATCAGACATGGCGG+CGG - chr4_1:80337635-80337654 Msa0576280:three_prime_UTR 45.0%
! AGACTAGTTATCTAGCGACC+AGG - chr4_1:80338057-80338076 Msa0576280:CDS 45.0%
! GACTAGTTATCTAGCGACCA+GGG - chr4_1:80338058-80338077 Msa0576280:CDS 45.0%
ACTAGTTATCTAGCGACCAG+GGG - chr4_1:80338059-80338078 Msa0576280:CDS 45.0%
GTGTGATTGTGTAAATCCCC+TGG + chr4_1:80338078-80338097 None:intergenic 45.0%
AACAACAGGTTCCAACAAGG+AGG - chr4_1:80338270-80338289 Msa0576280:CDS 45.0%
AGTCTTTGGATCCTCCTTGT+TGG + chr4_1:80338284-80338303 None:intergenic 45.0%
! GTGCTGTTCTTATGGTATGC+AGG - chr4_1:80338332-80338351 Msa0576280:CDS 45.0%
CTTATGGTATGCAGGACTTG+CGG - chr4_1:80338340-80338359 Msa0576280:CDS 45.0%
TTATGGTATGCAGGACTTGC+GGG - chr4_1:80338341-80338360 Msa0576280:intron 45.0%
AGGGTGATCATTGGACTTCA+AGG - chr4_1:80338368-80338387 Msa0576280:intron 45.0%
TACATATGCACCCTTTGCTG+AGG + chr4_1:80338479-80338498 None:intergenic 45.0%
CGGAAAAGCTCAAGCAAATC+AGG + chr4_1:80338610-80338629 None:intergenic 45.0%
CAAAAGACTGGCATGAGTAG+GGG - chr4_1:80338670-80338689 Msa0576280:CDS 45.0%
CCCAAGAACAACCTAAGCAT+TGG - chr4_1:80338798-80338817 Msa0576280:CDS 45.0%
! CCCAATGCTTAGGTTGTTCT+TGG + chr4_1:80338802-80338821 None:intergenic 45.0%
AGACTTCCGGAGATAAGAGA+GGG + chr4_1:80338844-80338863 None:intergenic 45.0%
TAGACTTCCGGAGATAAGAG+AGG + chr4_1:80338845-80338864 None:intergenic 45.0%
! GATTGGTTGCATGGTTCACA+AGG - chr4_1:80339037-80339056 Msa0576280:five_prime_UTR 45.0%
AGATGGATGGATGACTGGAT+TGG + chr4_1:80337542-80337561 None:intergenic 45.0%
TCCATCCATCTTCTTACCAG+TGG - chr4_1:80337551-80337570 Msa0576280:three_prime_UTR 45.0%
TCCACTGGTAAGAAGATGGA+TGG + chr4_1:80337555-80337574 None:intergenic 45.0%
CTGTTCCACTGGTAAGAAGA+TGG + chr4_1:80337559-80337578 None:intergenic 45.0%
TCTGTTCTGTTCTGTTCCAC+TGG + chr4_1:80337570-80337589 None:intergenic 45.0%
AATCTAATCAGACATGGCGG+CGG - chr4_1:80337635-80337654 Msa0576280:three_prime_UTR 45.0%
! AGACTAGTTATCTAGCGACC+AGG - chr4_1:80338057-80338076 Msa0576280:CDS 45.0%
! GACTAGTTATCTAGCGACCA+GGG - chr4_1:80338058-80338077 Msa0576280:CDS 45.0%
ACTAGTTATCTAGCGACCAG+GGG - chr4_1:80338059-80338078 Msa0576280:CDS 45.0%
GTGTGATTGTGTAAATCCCC+TGG + chr4_1:80338078-80338097 None:intergenic 45.0%
AACAACAGGTTCCAACAAGG+AGG - chr4_1:80338270-80338289 Msa0576280:CDS 45.0%
AGTCTTTGGATCCTCCTTGT+TGG + chr4_1:80338284-80338303 None:intergenic 45.0%
! GTGCTGTTCTTATGGTATGC+AGG - chr4_1:80338332-80338351 Msa0576280:CDS 45.0%
CTTATGGTATGCAGGACTTG+CGG - chr4_1:80338340-80338359 Msa0576280:CDS 45.0%
TTATGGTATGCAGGACTTGC+GGG - chr4_1:80338341-80338360 Msa0576280:intron 45.0%
AGGGTGATCATTGGACTTCA+AGG - chr4_1:80338368-80338387 Msa0576280:intron 45.0%
TACATATGCACCCTTTGCTG+AGG + chr4_1:80338479-80338498 None:intergenic 45.0%
CGGAAAAGCTCAAGCAAATC+AGG + chr4_1:80338610-80338629 None:intergenic 45.0%
CAAAAGACTGGCATGAGTAG+GGG - chr4_1:80338670-80338689 Msa0576280:CDS 45.0%
CCCAAGAACAACCTAAGCAT+TGG - chr4_1:80338798-80338817 Msa0576280:CDS 45.0%
! CCCAATGCTTAGGTTGTTCT+TGG + chr4_1:80338802-80338821 None:intergenic 45.0%
AGACTTCCGGAGATAAGAGA+GGG + chr4_1:80338844-80338863 None:intergenic 45.0%
TAGACTTCCGGAGATAAGAG+AGG + chr4_1:80338845-80338864 None:intergenic 45.0%
! GATTGGTTGCATGGTTCACA+AGG - chr4_1:80339037-80339056 Msa0576280:five_prime_UTR 45.0%
GAAGCTAAGGTGGGGAGAAT+TGG - chr4_1:80337677-80337696 Msa0576280:three_prime_UTR 50.0%
GGAGAATTGGAGGAAGACGA+TGG - chr4_1:80337690-80337709 Msa0576280:three_prime_UTR 50.0%
TTTCCTGTTACCACCACGTC+AGG - chr4_1:80337725-80337744 Msa0576280:three_prime_UTR 50.0%
TTACCACCACGTCAGGTGAT+AGG - chr4_1:80337732-80337751 Msa0576280:three_prime_UTR 50.0%
TTCGAGAAGGATCTCTTCGG+TGG + chr4_1:80337955-80337974 None:intergenic 50.0%
GCGTTCGAGAAGGATCTCTT+CGG + chr4_1:80337958-80337977 None:intergenic 50.0%
GGCTGTGCGAGATCCTTATA+TGG + chr4_1:80338397-80338416 None:intergenic 50.0%
TTGCAACAGATGCTGCTCCT+GGG - chr4_1:80338443-80338462 Msa0576280:intron 50.0%
TGTTCGGGTAACCAACCTCT+CGG - chr4_1:80338570-80338589 Msa0576280:intron 50.0%
! CTTGAGCTTTTCCGGCCTTT+TGG - chr4_1:80338616-80338635 Msa0576280:intron 50.0%
TACTGACAGCACCAAAAGGC+CGG + chr4_1:80338630-80338649 None:intergenic 50.0%
!!! GCCTTTTGGTGCTGTCAGTA+GGG - chr4_1:80338630-80338649 Msa0576280:intron 50.0%
ACCCTACTGACAGCACCAAA+AGG + chr4_1:80338634-80338653 None:intergenic 50.0%
TTAGCAGGGAAGATGCTCAG+AGG - chr4_1:80338713-80338732 Msa0576280:CDS 50.0%
TAGCAGGGAAGATGCTCAGA+GGG - chr4_1:80338714-80338733 Msa0576280:CDS 50.0%
! TGCTTAGGTTGTTCTTGGGG+TGG + chr4_1:80338797-80338816 None:intergenic 50.0%
!! CTCAAGAGCACCCAATGCTT+AGG + chr4_1:80338812-80338831 None:intergenic 50.0%
TTTGCCCCCTCTCTTATCTC+CGG - chr4_1:80338835-80338854 Msa0576280:CDS 50.0%
ACTTCCGGAGATAAGAGAGG+GGG + chr4_1:80338842-80338861 None:intergenic 50.0%
GACTTCCGGAGATAAGAGAG+GGG + chr4_1:80338843-80338862 None:intergenic 50.0%
TGGTTGCATGGTTCACAAGG+TGG - chr4_1:80339040-80339059 Msa0576280:five_prime_UTR 50.0%
GAAGCTAAGGTGGGGAGAAT+TGG - chr4_1:80337677-80337696 Msa0576280:three_prime_UTR 50.0%
GGAGAATTGGAGGAAGACGA+TGG - chr4_1:80337690-80337709 Msa0576280:three_prime_UTR 50.0%
TTTCCTGTTACCACCACGTC+AGG - chr4_1:80337725-80337744 Msa0576280:three_prime_UTR 50.0%
TTACCACCACGTCAGGTGAT+AGG - chr4_1:80337732-80337751 Msa0576280:three_prime_UTR 50.0%
TTCGAGAAGGATCTCTTCGG+TGG + chr4_1:80337955-80337974 None:intergenic 50.0%
GCGTTCGAGAAGGATCTCTT+CGG + chr4_1:80337958-80337977 None:intergenic 50.0%
GGCTGTGCGAGATCCTTATA+TGG + chr4_1:80338397-80338416 None:intergenic 50.0%
TTGCAACAGATGCTGCTCCT+GGG - chr4_1:80338443-80338462 Msa0576280:intron 50.0%
TGTTCGGGTAACCAACCTCT+CGG - chr4_1:80338570-80338589 Msa0576280:intron 50.0%
! CTTGAGCTTTTCCGGCCTTT+TGG - chr4_1:80338616-80338635 Msa0576280:intron 50.0%
TACTGACAGCACCAAAAGGC+CGG + chr4_1:80338630-80338649 None:intergenic 50.0%
!!! GCCTTTTGGTGCTGTCAGTA+GGG - chr4_1:80338630-80338649 Msa0576280:intron 50.0%
ACCCTACTGACAGCACCAAA+AGG + chr4_1:80338634-80338653 None:intergenic 50.0%
TTAGCAGGGAAGATGCTCAG+AGG - chr4_1:80338713-80338732 Msa0576280:CDS 50.0%
TAGCAGGGAAGATGCTCAGA+GGG - chr4_1:80338714-80338733 Msa0576280:CDS 50.0%
! TGCTTAGGTTGTTCTTGGGG+TGG + chr4_1:80338797-80338816 None:intergenic 50.0%
!! CTCAAGAGCACCCAATGCTT+AGG + chr4_1:80338812-80338831 None:intergenic 50.0%
TTTGCCCCCTCTCTTATCTC+CGG - chr4_1:80338835-80338854 Msa0576280:CDS 50.0%
ACTTCCGGAGATAAGAGAGG+GGG + chr4_1:80338842-80338861 None:intergenic 50.0%
GACTTCCGGAGATAAGAGAG+GGG + chr4_1:80338843-80338862 None:intergenic 50.0%
TGGTTGCATGGTTCACAAGG+TGG - chr4_1:80339040-80339059 Msa0576280:five_prime_UTR 50.0%
TGAACCGGCGAAGCTAAGGT+GGG - chr4_1:80337668-80337687 Msa0576280:three_prime_UTR 55.0%
GCTAAGGTGGGGAGAATTGG+AGG - chr4_1:80337680-80337699 Msa0576280:three_prime_UTR 55.0%
GGAAGACGATGGCGAAGATC+TGG - chr4_1:80337701-80337720 Msa0576280:three_prime_UTR 55.0%
TCACCTGACGTGGTGGTAAC+AGG + chr4_1:80337731-80337750 None:intergenic 55.0%
TCAGGACCTATCACCTGACG+TGG + chr4_1:80337741-80337760 None:intergenic 55.0%
CTCCGAACTTAGGCCAGGAA+CGG + chr4_1:80337890-80337909 None:intergenic 55.0%
TGAACGGCGTCTCCGAACTT+AGG + chr4_1:80337900-80337919 None:intergenic 55.0%
GACGCCGTTCATGAAGACGT+CGG - chr4_1:80337909-80337928 Msa0576280:CDS 55.0%
!! GGCACCGACGTCTTCATGAA+CGG + chr4_1:80337916-80337935 None:intergenic 55.0%
CTTCGGTGGAGACCATAGTG+AGG + chr4_1:80337941-80337960 None:intergenic 55.0%
GACAGTGGGTCAGCAGTCTT+TGG + chr4_1:80338298-80338317 None:intergenic 55.0%
ATGCAGGACTTGCGGGAAGA+AGG - chr4_1:80338348-80338367 Msa0576280:intron 55.0%
TGCAGGACTTGCGGGAAGAA+GGG - chr4_1:80338349-80338368 Msa0576280:intron 55.0%
GCGGGAAGAAGGGTGATCAT+TGG - chr4_1:80338359-80338378 Msa0576280:intron 55.0%
GGAGCAGCATCTGTTGCAAC+AGG + chr4_1:80338442-80338461 None:intergenic 55.0%
GTTGCAACAGATGCTGCTCC+TGG - chr4_1:80338442-80338461 Msa0576280:intron 55.0%
TGCAACAGATGCTGCTCCTG+GGG - chr4_1:80338444-80338463 Msa0576280:intron 55.0%
GCTTCAGCTGCCTCAGCAAA+GGG - chr4_1:80338466-80338485 Msa0576280:intron 55.0%
!! GGACTACTGGCTCTGACATG+AGG - chr4_1:80338527-80338546 Msa0576280:intron 55.0%
!! CTACTGGCTCTGACATGAGG+CGG - chr4_1:80338530-80338549 Msa0576280:intron 55.0%
CAACCTCTCGGAGGACACAA+GGG - chr4_1:80338582-80338601 Msa0576280:intron 55.0%
!!! GGCCTTTTGGTGCTGTCAGT+AGG - chr4_1:80338629-80338648 Msa0576280:intron 55.0%
ACTGGCATGAGTAGGGGCTT+TGG - chr4_1:80338676-80338695 Msa0576280:CDS 55.0%
TGAACCGGCGAAGCTAAGGT+GGG - chr4_1:80337668-80337687 Msa0576280:three_prime_UTR 55.0%
GCTAAGGTGGGGAGAATTGG+AGG - chr4_1:80337680-80337699 Msa0576280:three_prime_UTR 55.0%
GGAAGACGATGGCGAAGATC+TGG - chr4_1:80337701-80337720 Msa0576280:three_prime_UTR 55.0%
TCACCTGACGTGGTGGTAAC+AGG + chr4_1:80337731-80337750 None:intergenic 55.0%
TCAGGACCTATCACCTGACG+TGG + chr4_1:80337741-80337760 None:intergenic 55.0%
CTCCGAACTTAGGCCAGGAA+CGG + chr4_1:80337890-80337909 None:intergenic 55.0%
TGAACGGCGTCTCCGAACTT+AGG + chr4_1:80337900-80337919 None:intergenic 55.0%
GACGCCGTTCATGAAGACGT+CGG - chr4_1:80337909-80337928 Msa0576280:CDS 55.0%
!! GGCACCGACGTCTTCATGAA+CGG + chr4_1:80337916-80337935 None:intergenic 55.0%
CTTCGGTGGAGACCATAGTG+AGG + chr4_1:80337941-80337960 None:intergenic 55.0%
GACAGTGGGTCAGCAGTCTT+TGG + chr4_1:80338298-80338317 None:intergenic 55.0%
ATGCAGGACTTGCGGGAAGA+AGG - chr4_1:80338348-80338367 Msa0576280:intron 55.0%
TGCAGGACTTGCGGGAAGAA+GGG - chr4_1:80338349-80338368 Msa0576280:intron 55.0%
GCGGGAAGAAGGGTGATCAT+TGG - chr4_1:80338359-80338378 Msa0576280:intron 55.0%
GGAGCAGCATCTGTTGCAAC+AGG + chr4_1:80338442-80338461 None:intergenic 55.0%
GTTGCAACAGATGCTGCTCC+TGG - chr4_1:80338442-80338461 Msa0576280:intron 55.0%
TGCAACAGATGCTGCTCCTG+GGG - chr4_1:80338444-80338463 Msa0576280:intron 55.0%
GCTTCAGCTGCCTCAGCAAA+GGG - chr4_1:80338466-80338485 Msa0576280:intron 55.0%
!! GGACTACTGGCTCTGACATG+AGG - chr4_1:80338527-80338546 Msa0576280:intron 55.0%
!! CTACTGGCTCTGACATGAGG+CGG - chr4_1:80338530-80338549 Msa0576280:intron 55.0%
CAACCTCTCGGAGGACACAA+GGG - chr4_1:80338582-80338601 Msa0576280:intron 55.0%
!!! GGCCTTTTGGTGCTGTCAGT+AGG - chr4_1:80338629-80338648 Msa0576280:intron 55.0%
ACTGGCATGAGTAGGGGCTT+TGG - chr4_1:80338676-80338695 Msa0576280:CDS 55.0%
AGACATGGCGGCGGCAATTC+AGG - chr4_1:80337644-80337663 Msa0576280:three_prime_UTR 60.0%
GGCGGCAATTCAGGCTGAAC+CGG - chr4_1:80337653-80337672 Msa0576280:three_prime_UTR 60.0%
AGGCTGAACCGGCGAAGCTA+AGG - chr4_1:80337664-80337683 Msa0576280:three_prime_UTR 60.0%
CTGAACCGGCGAAGCTAAGG+TGG - chr4_1:80337667-80337686 Msa0576280:three_prime_UTR 60.0%
GAACCGGCGAAGCTAAGGTG+GGG - chr4_1:80337669-80337688 Msa0576280:three_prime_UTR 60.0%
TCTCCCCACCTTAGCTTCGC+CGG + chr4_1:80337675-80337694 None:intergenic 60.0%
GGACCTATCACCTGACGTGG+TGG + chr4_1:80337738-80337757 None:intergenic 60.0%
! ACGCGCGTTGGCAAGTTTGC+GGG + chr4_1:80337844-80337863 None:intergenic 60.0%
! GACGCGCGTTGGCAAGTTTG+CGG + chr4_1:80337845-80337864 None:intergenic 60.0%
CGCCGTTCCTGGCCTAAGTT+CGG - chr4_1:80337885-80337904 Msa0576280:CDS 60.0%
GGTGGAGACCATAGTGAGGC+GGG + chr4_1:80337937-80337956 None:intergenic 60.0%
CGGTGGAGACCATAGTGAGG+CGG + chr4_1:80337938-80337957 None:intergenic 60.0%
! GTGGTTTGGGGCGTTCGAGA+AGG + chr4_1:80337968-80337987 None:intergenic 60.0%
CTCGAACGCCCCAAACCACT+TGG - chr4_1:80337969-80337988 Msa0576280:CDS 60.0%
GGCTTCAGCTGCCTCAGCAA+AGG - chr4_1:80338465-80338484 Msa0576280:intron 60.0%
GTACCTCCTAGCCTGAGAGC+TGG - chr4_1:80338496-80338515 Msa0576280:intron 60.0%
TCCTAGCCTGAGAGCTGGTG+CGG - chr4_1:80338501-80338520 Msa0576280:intron 60.0%
TCGGGTAACCAACCTCTCGG+AGG - chr4_1:80338573-80338592 Msa0576280:intron 60.0%
CCTTGTGTCCTCCGAGAGGT+TGG + chr4_1:80338584-80338603 None:intergenic 60.0%
CCAACCTCTCGGAGGACACA+AGG - chr4_1:80338581-80338600 Msa0576280:intron 60.0%
GGGTGGCCCATTCAACTCTC+AGG + chr4_1:80338780-80338799 None:intergenic 60.0%
AGACATGGCGGCGGCAATTC+AGG - chr4_1:80337644-80337663 Msa0576280:three_prime_UTR 60.0%
GGCGGCAATTCAGGCTGAAC+CGG - chr4_1:80337653-80337672 Msa0576280:three_prime_UTR 60.0%
AGGCTGAACCGGCGAAGCTA+AGG - chr4_1:80337664-80337683 Msa0576280:three_prime_UTR 60.0%
CTGAACCGGCGAAGCTAAGG+TGG - chr4_1:80337667-80337686 Msa0576280:three_prime_UTR 60.0%
GAACCGGCGAAGCTAAGGTG+GGG - chr4_1:80337669-80337688 Msa0576280:three_prime_UTR 60.0%
TCTCCCCACCTTAGCTTCGC+CGG + chr4_1:80337675-80337694 None:intergenic 60.0%
GGACCTATCACCTGACGTGG+TGG + chr4_1:80337738-80337757 None:intergenic 60.0%
! ACGCGCGTTGGCAAGTTTGC+GGG + chr4_1:80337844-80337863 None:intergenic 60.0%
! GACGCGCGTTGGCAAGTTTG+CGG + chr4_1:80337845-80337864 None:intergenic 60.0%
CGCCGTTCCTGGCCTAAGTT+CGG - chr4_1:80337885-80337904 Msa0576280:CDS 60.0%
GGTGGAGACCATAGTGAGGC+GGG + chr4_1:80337937-80337956 None:intergenic 60.0%
CGGTGGAGACCATAGTGAGG+CGG + chr4_1:80337938-80337957 None:intergenic 60.0%
! GTGGTTTGGGGCGTTCGAGA+AGG + chr4_1:80337968-80337987 None:intergenic 60.0%
CTCGAACGCCCCAAACCACT+TGG - chr4_1:80337969-80337988 Msa0576280:CDS 60.0%
GGCTTCAGCTGCCTCAGCAA+AGG - chr4_1:80338465-80338484 Msa0576280:intron 60.0%
GTACCTCCTAGCCTGAGAGC+TGG - chr4_1:80338496-80338515 Msa0576280:intron 60.0%
TCCTAGCCTGAGAGCTGGTG+CGG - chr4_1:80338501-80338520 Msa0576280:intron 60.0%
TCGGGTAACCAACCTCTCGG+AGG - chr4_1:80338573-80338592 Msa0576280:intron 60.0%
CCTTGTGTCCTCCGAGAGGT+TGG + chr4_1:80338584-80338603 None:intergenic 60.0%
CCAACCTCTCGGAGGACACA+AGG - chr4_1:80338581-80338600 Msa0576280:intron 60.0%
GGGTGGCCCATTCAACTCTC+AGG + chr4_1:80338780-80338799 None:intergenic 60.0%
GGCAAGTTTGCGGGTGCGAG+TGG + chr4_1:80337835-80337854 None:intergenic 65.0%
! GCGTTTGCTGAGACGCGCGT+TGG + chr4_1:80337856-80337875 None:intergenic 65.0%
AGGCCAGGAACGGCGCTCAA+CGG + chr4_1:80337880-80337899 None:intergenic 65.0%
GGCGTCTCCGAACTTAGGCC+AGG + chr4_1:80337895-80337914 None:intergenic 65.0%
GCACCAGCTCTCAGGCTAGG+AGG + chr4_1:80338502-80338521 None:intergenic 65.0%
TCCGCACCAGCTCTCAGGCT+AGG + chr4_1:80338505-80338524 None:intergenic 65.0%
TCCTCTCCGCACCAGCTCTC+AGG + chr4_1:80338510-80338529 None:intergenic 65.0%
GCTGGTGCGGAGAGGACTAC+TGG - chr4_1:80338514-80338533 Msa0576280:intron 65.0%
!! CTGGCTCTGACATGAGGCGG+AGG - chr4_1:80338533-80338552 Msa0576280:intron 65.0%
GCTCCCTTGTGTCCTCCGAG+AGG + chr4_1:80338588-80338607 None:intergenic 65.0%
GGCAAGTTTGCGGGTGCGAG+TGG + chr4_1:80337835-80337854 None:intergenic 65.0%
! GCGTTTGCTGAGACGCGCGT+TGG + chr4_1:80337856-80337875 None:intergenic 65.0%
AGGCCAGGAACGGCGCTCAA+CGG + chr4_1:80337880-80337899 None:intergenic 65.0%
GGCGTCTCCGAACTTAGGCC+AGG + chr4_1:80337895-80337914 None:intergenic 65.0%
GCACCAGCTCTCAGGCTAGG+AGG + chr4_1:80338502-80338521 None:intergenic 65.0%
TCCGCACCAGCTCTCAGGCT+AGG + chr4_1:80338505-80338524 None:intergenic 65.0%
TCCTCTCCGCACCAGCTCTC+AGG + chr4_1:80338510-80338529 None:intergenic 65.0%
GCTGGTGCGGAGAGGACTAC+TGG - chr4_1:80338514-80338533 Msa0576280:intron 65.0%
!! CTGGCTCTGACATGAGGCGG+AGG - chr4_1:80338533-80338552 Msa0576280:intron 65.0%
GCTCCCTTGTGTCCTCCGAG+AGG + chr4_1:80338588-80338607 None:intergenic 65.0%
! CGTCGGTGCCCGCCTCACTA+TGG - chr4_1:80337926-80337945 Msa0576280:CDS 70.0%
GCTGAGGCAGCTGAAGCCCC+AGG + chr4_1:80338463-80338482 None:intergenic 70.0%
GCCTGAGAGCTGGTGCGGAG+AGG - chr4_1:80338506-80338525 Msa0576280:intron 70.0%
! CGTCGGTGCCCGCCTCACTA+TGG - chr4_1:80337926-80337945 Msa0576280:CDS 70.0%
GCTGAGGCAGCTGAAGCCCC+AGG + chr4_1:80338463-80338482 None:intergenic 70.0%
GCCTGAGAGCTGGTGCGGAG+AGG - chr4_1:80338506-80338525 Msa0576280:intron 70.0%
! GCGCCGTTGAGCGCCGTTCC+TGG - chr4_1:80337874-80337893 Msa0576280:CDS 75.0%
! GCGCCGTTGAGCGCCGTTCC+TGG - chr4_1:80337874-80337893 Msa0576280:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80337521 80339116 80337521 ID=Msa0576280;Name=Msa0576280
chr4_1 mRNA 80337521 80339116 80337521 ID=Msa0576280-mRNA-1;Parent=Msa0576280;Name=Msa0576280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127|1|1|1|1|1|2|303|292
chr4_1 exon 80337521 80338359 80337521 ID=Msa0576280-mRNA-1:exon:28692;Parent=Msa0576280-mRNA-1
chr4_1 exon 80338647 80339116 80338647 ID=Msa0576280-mRNA-1:exon:28691;Parent=Msa0576280-mRNA-1
chr4_1 five_prime_UTR 80338990 80339116 80338990 ID=Msa0576280-mRNA-1:five_prime_utr;Parent=Msa0576280-mRNA-1
chr4_1 CDS 80338647 80338989 80338647 ID=Msa0576280-mRNA-1:cds;Parent=Msa0576280-mRNA-1
chr4_1 CDS 80337824 80338359 80337824 ID=Msa0576280-mRNA-1:cds;Parent=Msa0576280-mRNA-1
chr4_1 three_prime_UTR 80337521 80337823 80337521 ID=Msa0576280-mRNA-1:three_prime_utr;Parent=Msa0576280-mRNA-1
Gene Sequence

>Msa0576280

ATGGCGGCGGCAATTCAGGCTGAACCGGCGAAGCTAAGGTGGGGAGAATTGGAGGAAGACGATGGCGAAGATCTGGATTTCCTGTTACCACCACGTCAGGTGATAGGTCCTGATGAAAATGGAATCAAAAGGGTTATTGAGTACAAATTCGATGATGATGGTAATAAGGTTAAGATCACTACAACCACTCGCACCCGCAAACTTGCCAACGCGCGTCTCAGCAAACGCGCCGTTGAGCGCCGTTCCTGGCCTAAGTTCGGAGACGCCGTTCATGAAGACGTCGGTGCCCGCCTCACTATGGTCTCCACCGAAGAGATCCTTCTCGAACGCCCCAAACCACTTGGTTCCAACAAGGAGGATCCAAAGACTGCTGACCCACTGTCTCAATTCAATAAAGGTGCTGTTCTTATGGTATGCAGGACTTGCGGGAAGAAGGGTGATCATTGGACTTCAAGGTGTCCATATAAGGATCTCGCACAGCCGCCTGAGACTTTTGTTGATAAACCTGTTGCAACAGATGCTGCTCCTGGGGCTTCAGCTGCCTCAGCAAAGGGTGCATATGTACCTCCTAGCCTGAGAGCTGGTGCGGAGAGGACTACTGGCTCTGACATGAGGCGGAGGAACGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAGGACACAAGGGAGCCTGATTTGCTTGAGCTTTTCCGGCCTTTTGGTGCTGTCAGTAGGGTCTATGTTGCTATTGATCAAAAGACTGGCATGAGTAGGGGCTTTGGCTTTGTGAACTTTGTTAGCAGGGAAGATGCTCAGAGGGCTATCAACAAACTCAATGGATATGGCTACGACAATCTCATCCTGAGAGTTGAATGGGCCACCCCAAGAACAACCTAA
Protein sequence

>Msa0576280

MAAAIQAEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKRVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGARLTMVSTEEILLERPKPLGSNKEDPKTADPLSQFNKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPPETFVDKPVATDAAPGASAASAKGAYVPPSLRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT*