AlfalfaGEDB | Msa0591030

M. sativa cultivar zhongmu-4 / Msa0591030

KEGG: K02953
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF08069.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0591030	XP_003605133.2	100.000	151	0	0	1	151	1	151	3.62e-105	306

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0591030	sp\|P62302\|RS13_SOYBN	94.702	151	8	0	1	151	1	151	5.05e-102	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0591030	B7FGJ7	100.000	151	0	0	1	151	1	151	1.73e-105	306

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0191450	Msa0591030	0.818757	1.659670e-52	-8.615850e-47
Msa0191550	Msa0591030	0.804279	2.331233e-49	-8.615850e-47
Msa0192350	Msa0591030	0.841835	3.733683e-58	-8.615850e-47
Msa0540480	Msa0591030	0.809408	1.920767e-50	-8.615850e-47
Msa0576280	Msa0591030	0.809749	1.622407e-50	-8.615850e-47
Msa0591030	Msa0591050	0.964270	4.073496e-123	-8.615850e-47
Msa0591030	Msa0705800	0.816467	5.448230e-52	-8.615850e-47
Msa0591030	Msa0876170	0.800896	1.162138e-48	-8.615850e-47
Msa0591030	Msa1418770	0.830558	2.745235e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0591030	MtrunA17_Chr4g0011261	100.000	151	0	1	151	1	151	3.33e-109	306
Msa0591030	MtrunA17_Chr4g0056921	94.040	151	9	1	151	1	151	2.54e-102	289
Msa0591030	MtrunA17_Chr5g0398801	94.702	151	8	1	151	1	151	4.30e-102	289

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0591030	AT4G00100.1	91.391	151	13	0	1	151	1	151	8.65e-100	283
Msa0591030	AT3G60770.1	91.391	151	13	0	1	151	1	151	3.52e-99	281

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Find 53 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGTATATCAATTAA+AGG	0.262021	4_2:+15108688	None:intergenic
AATACTTACTATTTCCATAC+TGG	0.381602	4_2:+15109445	None:intergenic
AATAGAAAATTTAAAACTAA+TGG	0.271717	4_2:+15108660	None:intergenic
ACAAGAGAACACCAGCAAGT+TGG	0.596373	4_2:-15115079	Msa0591030:CDS
ACTCTTGTTGCTTGAAGAGA+TGG	0.495938	4_2:-15108854	Msa0591030:exon
ACTTACTATTTCCATACTGG+TGG	0.562660	4_2:+15109448	None:intergenic
ACTTAGAATAAATATACATC+CGG	0.537014	4_2:+15108567	None:intergenic
AGAATAACACCAATTTGAGA+TGG	0.576179	4_2:+15109824	None:intergenic
AGATGGAGTTAGACCTTTCT+TGG	0.271027	4_2:+15109841	None:intergenic
AGGACAAGGACTCCAAATTC+AGG	0.445955	4_2:-15109534	Msa0591030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATGAGATTTGTAACGTG+TGG	-	chr4_2:15109007-15109026	Msa0591030:intron	30.0%
CTAATGCAAGCTTATACTTA+GGG	+	chr4_2:15109171-15109190	None:intergenic	30.0%
ATCATAAAGCTTATGTCAGT+AGG	-	chr4_2:15109335-15109354	Msa0591030:intron	30.0%
TCATAAAGCTTATGTCAGTA+GGG	-	chr4_2:15109336-15109355	Msa0591030:intron	30.0%
ATATAAGCCAATTCAAACAG+TGG	-	chr4_2:15109365-15109384	Msa0591030:intron	30.0%
AAAAAGTCCACTGTTTGAAT+TGG	+	chr4_2:15109375-15109394	None:intergenic	30.0%
GATTGGGATGAAAATCTAAA+AGG	+	chr4_2:15109986-15110005	None:intergenic	30.0%
GAAAACAATAGAACTGTGTT+TGG	-	chr4_2:15110100-15110119	Msa0591030:intron	30.0%
AAAGGGCTCAGAAAAATAAT+GGG	+	chr4_2:15110522-15110541	None:intergenic	30.0%
AAAAGGGCTCAGAAAAATAA+TGG	+	chr4_2:15110523-15110542	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	15108560	15115337	15108560	ID=Msa0591030;Name=Msa0591030
chr4_2	mRNA	15108560	15115337	15108560	ID=Msa0591030-mRNA-1;Parent=Msa0591030;Name=Msa0591030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91\|1\|1\|1\|1\|1\|5\|302\|151
chr4_2	exon	15108560	15108895	15108560	ID=Msa0591030-mRNA-1:exon:4322;Parent=Msa0591030-mRNA-1
chr4_2	exon	15109454	15109640	15109454	ID=Msa0591030-mRNA-1:exon:4321;Parent=Msa0591030-mRNA-1
chr4_2	exon	15109750	15109888	15109750	ID=Msa0591030-mRNA-1:exon:4320;Parent=Msa0591030-mRNA-1
chr4_2	exon	15115058	15115130	15115058	ID=Msa0591030-mRNA-1:exon:4319;Parent=Msa0591030-mRNA-1
chr4_2	exon	15115224	15115337	15115224	ID=Msa0591030-mRNA-1:exon:4318;Parent=Msa0591030-mRNA-1
chr4_2	five_prime_UTR	15115247	15115337	15115247	ID=Msa0591030-mRNA-1:five_prime_utr;Parent=Msa0591030-mRNA-1
chr4_2	CDS	15115224	15115246	15115224	ID=Msa0591030-mRNA-1:cds;Parent=Msa0591030-mRNA-1
chr4_2	CDS	15115058	15115130	15115058	ID=Msa0591030-mRNA-1:cds;Parent=Msa0591030-mRNA-1
chr4_2	CDS	15109750	15109888	15109750	ID=Msa0591030-mRNA-1:cds;Parent=Msa0591030-mRNA-1
chr4_2	CDS	15109454	15109640	15109454	ID=Msa0591030-mRNA-1:cds;Parent=Msa0591030-mRNA-1
chr4_2	CDS	15108862	15108895	15108862	ID=Msa0591030-mRNA-1:cds;Parent=Msa0591030-mRNA-1
chr4_2	three_prime_UTR	15108560	15108861	15108560	ID=Msa0591030-mRNA-1:three_prime_utr;Parent=Msa0591030-mRNA-1

Gene Sequence

>Msa0591030

ATGGGTCGTATGCACAGTGGCGGCAAGGGTATTTCAAGTTCAGCTCTTCCTTACAAGAGAACACCAGCAAGTTGGCTCAAGATCTCTACCCAGGATGTTGACGAGACCATCTGCAAGTTTGCCAAGAAAGGTCTAACTCCATCTCAAATTGGTGTTATTCTTCGTGACTCCCATGGAATTGCTCAGGTTAAGGCTGTAACCGGAAACAAGATTTTGCGCATATTGAAGGCGCATGGGCTTGCTCCTGAAATTCCTGAAGATCTGTATCACCTGATCAAGAAGGCTGTCTCAATTAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAATTCAGGCTAATTTTGGTCGAGAGCAGGATCCATCGCCTTGCTCGTTACTATAAGAAGACAAAGAAGCTTCCACCAGTATGGAAATACGAATCAACAACTGCCAGCACTCTTGTTGCTTGA

Protein sequence

>Msa0591030

MGRMHSGGKGISSSALPYKRTPASWLKISTQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*