Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591050 | XP_003605133.2 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 3.62e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591050 | sp|P62302|RS13_SOYBN | 94.702 | 151 | 8 | 0 | 1 | 151 | 1 | 151 | 5.05e-102 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591050 | B7FGJ7 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 1.73e-105 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0591050 | 0.815755 | 7.856390e-52 | -8.615850e-47 |
| Msa0065110 | Msa0591050 | 0.803432 | 3.496782e-49 | -8.615850e-47 |
| Msa0114570 | Msa0591050 | 0.814492 | 1.498777e-51 | -8.615850e-47 |
| Msa0134580 | Msa0591050 | 0.809796 | 1.585399e-50 | -8.615850e-47 |
| Msa0191450 | Msa0591050 | 0.873042 | 1.997736e-67 | -8.615850e-47 |
| Msa0191550 | Msa0591050 | 0.859577 | 3.757135e-63 | -8.615850e-47 |
| Msa0192350 | Msa0591050 | 0.844727 | 6.320516e-59 | -8.615850e-47 |
| Msa0194940 | Msa0591050 | 0.827410 | 1.588541e-54 | -8.615850e-47 |
| Msa0371490 | Msa0591050 | 0.813750 | 2.185085e-51 | -8.615850e-47 |
| Msa0426090 | Msa0591050 | 0.812500 | 4.110105e-51 | -8.615850e-47 |
| Msa0471880 | Msa0591050 | 0.807167 | 5.769124e-50 | -8.615850e-47 |
| Msa0472480 | Msa0591050 | 0.815707 | 8.051744e-52 | -8.615850e-47 |
| Msa0481520 | Msa0591050 | 0.852120 | 5.687289e-61 | -8.615850e-47 |
| Msa0297830 | Msa0591050 | 0.811547 | 6.627875e-51 | -8.615850e-47 |
| Msa0333910 | Msa0591050 | 0.810895 | 9.180900e-51 | -8.615850e-47 |
| Msa0334030 | Msa0591050 | 0.828283 | 9.797785e-55 | -8.615850e-47 |
| Msa0335840 | Msa0591050 | 0.812690 | 3.734750e-51 | -8.615850e-47 |
| Msa0517480 | Msa0591050 | 0.832538 | 8.930732e-56 | -8.615850e-47 |
| Msa0529900 | Msa0591050 | 0.814408 | 1.564584e-51 | -8.615850e-47 |
| Msa0540480 | Msa0591050 | 0.871354 | 7.285288e-67 | -8.615850e-47 |
| Msa0576280 | Msa0591050 | 0.816677 | 4.888057e-52 | -8.615850e-47 |
| Msa0584030 | Msa0591050 | 0.809633 | 1.718168e-50 | -8.615850e-47 |
| Msa0591030 | Msa0591050 | 0.964270 | 4.073496e-123 | -8.615850e-47 |
| Msa0591050 | Msa0622230 | 0.806867 | 6.676275e-50 | -8.615850e-47 |
| Msa0591050 | Msa0705800 | 0.871946 | 4.637327e-67 | -8.615850e-47 |
| Msa0591050 | Msa0799830 | 0.801411 | 9.117864e-49 | -8.615850e-47 |
| Msa0591050 | Msa0822580 | 0.834310 | 3.228041e-56 | -8.615850e-47 |
| Msa0591050 | Msa0876170 | 0.820388 | 7.044131e-53 | -8.615850e-47 |
| Msa0591050 | Msa0915540 | 0.804827 | 1.791898e-49 | -8.615850e-47 |
| Msa0591050 | Msa1021120 | 0.821131 | 4.753373e-53 | -8.615850e-47 |
| Msa0591050 | Msa1082170 | 0.829283 | 5.613180e-55 | -8.615850e-47 |
| Msa0591050 | Msa1126520 | 0.831849 | 1.322233e-55 | -8.615850e-47 |
| Msa0591050 | Msa1165640 | 0.810607 | 1.059913e-50 | -8.615850e-47 |
| Msa0591050 | Msa1186030 | 0.822914 | 1.835556e-53 | -8.615850e-47 |
| Msa0591050 | Msa1218170 | 0.806753 | 7.059198e-50 | -8.615850e-47 |
| Msa0591050 | Msa1240270 | 0.800788 | 1.222850e-48 | -8.615850e-47 |
| Msa0591050 | Msa1301640 | 0.814493 | 1.498100e-51 | -8.615850e-47 |
| Msa0591050 | Msa1397100 | 0.807386 | 5.184064e-50 | -8.615850e-47 |
| Msa0591050 | Msa1403910 | 0.827635 | 1.403476e-54 | -8.615850e-47 |
| Msa0591050 | Msa1418770 | 0.863786 | 1.941314e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591050 | MtrunA17_Chr4g0011261 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 3.33e-109 | 306 |
| Msa0591050 | MtrunA17_Chr4g0056921 | 94.040 | 151 | 9 | 0 | 1 | 151 | 1 | 151 | 2.54e-102 | 289 |
| Msa0591050 | MtrunA17_Chr5g0398801 | 94.702 | 151 | 8 | 0 | 1 | 151 | 1 | 151 | 4.30e-102 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591050 | AT4G00100.1 | 91.391 | 151 | 13 | 0 | 1 | 151 | 1 | 151 | 8.65e-100 | 283 |
| Msa0591050 | AT3G60770.1 | 91.391 | 151 | 13 | 0 | 1 | 151 | 1 | 151 | 3.52e-99 | 281 |
Find 52 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAAATTCAGGCTAATTT+TGG | 0.149134 | 4_2:+15143075 | Msa0591050:CDS |
| GACCAAAATTAGCCTGAATT+TGG | 0.223891 | 4_2:-15143077 | None:intergenic |
| TATGCGCAAAATCTTGTTTC+CGG | 0.257809 | 4_2:-15142836 | None:intergenic |
| AAAGAGAGTATATCAATTAA+AGG | 0.262021 | 4_2:-15143911 | None:intergenic |
| AGATGGAGTTAGACCTTTCT+TGG | 0.271027 | 4_2:-15142758 | None:intergenic |
| AATAGAAAATTTAAAACTAA+TGG | 0.271717 | 4_2:-15143939 | None:intergenic |
| TACAGATCTTCAGGAATTTC+AGG | 0.309178 | 4_2:-15142989 | None:intergenic |
| ATCAGGTGATACAGATCTTC+AGG | 0.338551 | 4_2:-15142998 | None:intergenic |
| TAGTATTCTTCTATCTGTTT+TGG | 0.343594 | 4_2:+15143997 | Msa0591050:three_prime_UTR |
| CAAAGAAGCTTCCACCAGTA+TGG | 0.349985 | 4_2:+15143140 | Msa0591050:CDS |
| GGTCTAACTCCATCTCAAAT+TGG | 0.359176 | 4_2:+15142766 | Msa0591050:CDS |
| ATAGAAAATTTAAAACTAAT+GGG | 0.361924 | 4_2:-15143938 | None:intergenic |
| CTTCTCTCCTCATTTGTCAC+TGG | 0.366533 | 4_2:+15138913 | None:intergenic |
| GGAAGCATTTGGAGAGGAAC+AGG | 0.374872 | 4_2:+15143041 | Msa0591050:CDS |
| TCAAGAAGGCTGTCTCAATT+AGG | 0.379771 | 4_2:+15143020 | Msa0591050:CDS |
| AATACTTACTATTTCCATAC+TGG | 0.381602 | 4_2:-15143154 | None:intergenic |
| TTGAGACAGCCTTCTTGATC+AGG | 0.385210 | 4_2:-15143015 | None:intergenic |
| CTTGCTGGTGTTCTCTTGTA+AGG | 0.404266 | 4_2:-15139252 | None:intergenic |
| CCATGGAATTGCTCAGGTTA+AGG | 0.405652 | 4_2:+15142807 | Msa0591050:CDS |
| TTCTCCTCAATCATTCATCA+TGG | 0.427391 | 4_2:+15139092 | Msa0591050:exon |
| TGTCTCAATTAGGAAGCATT+TGG | 0.438327 | 4_2:+15143030 | Msa0591050:CDS |
| AGGACAAGGACTCCAAATTC+AGG | 0.445955 | 4_2:+15143065 | Msa0591050:CDS |
| GAGATCTTGAGCCAACTTGC+TGG | 0.447833 | 4_2:-15139267 | None:intergenic |
| ATCTGCAAGTTTGCCAAGAA+AGG | 0.457907 | 4_2:+15142745 | Msa0591050:CDS |
| GCTCAGGTTAAGGCTGTAAC+CGG | 0.462422 | 4_2:+15142817 | Msa0591050:CDS |
| TGTATATTTATTCTAAGTGA+TGG | 0.484794 | 4_2:+15144037 | Msa0591050:three_prime_UTR |
| ACTCTTGTTGCTTGAAGAGA+TGG | 0.495938 | 4_2:+15143745 | Msa0591050:exon |
| TGACTCCCATGGAATTGCTC+AGG | 0.496575 | 4_2:+15142801 | Msa0591050:CDS |
| GTTATTCTTCGTGACTCCCA+TGG | 0.508409 | 4_2:+15142790 | Msa0591050:CDS |
| CCTTAACCTGAGCAATTCCA+TGG | 0.520963 | 4_2:-15142807 | None:intergenic |
| TTTCTTGGCAAACTTGCAGA+TGG | 0.531932 | 4_2:-15142743 | None:intergenic |
| TCTCCTCAATCATTCATCAT+GGG | 0.533082 | 4_2:+15139093 | Msa0591050:exon |
| ACTTAGAATAAATATACATC+CGG | 0.537014 | 4_2:-15144032 | None:intergenic |
| TCTTCAAGCAACAAGAGTGC+TGG | 0.541036 | 4_2:-15143740 | None:intergenic |
| TAAATTCATTTGTAAGACCA+TGG | 0.547018 | 4_2:-15143963 | None:intergenic |
| ACTTACTATTTCCATACTGG+TGG | 0.562660 | 4_2:-15143151 | None:intergenic |
| TATAGTAACGAGCAAGGCGA+TGG | 0.565886 | 4_2:-15143111 | None:intergenic |
| TGGGTCGTATGCACAGTGGC+GGG | 0.571625 | 4_2:+15139112 | Msa0591050:CDS |
| CGACCCATGATGAATGATTG+AGG | 0.575216 | 4_2:-15139096 | None:intergenic |
| AGAATAACACCAATTTGAGA+TGG | 0.576179 | 4_2:-15142775 | None:intergenic |
| TCTTCTTATAGTAACGAGCA+AGG | 0.583518 | 4_2:-15143117 | None:intergenic |
| ACAAGAGAACACCAGCAAGT+TGG | 0.596373 | 4_2:+15139256 | Msa0591050:CDS |
| TTGGCTCAAGATCTCTACCC+AGG | 0.597059 | 4_2:+15139275 | Msa0591050:CDS |
| TCTGTATCACCTGATCAAGA+AGG | 0.601322 | 4_2:+15143006 | Msa0591050:CDS |
| TTGTTGCTTGAAGAGATGGT+CGG | 0.609763 | 4_2:+15143749 | Msa0591050:exon |
| ATGGGTCGTATGCACAGTGG+CGG | 0.611401 | 4_2:+15139111 | Msa0591050:CDS |
| TTGCGCATATTGAAGGCGCA+TGG | 0.612509 | 4_2:+15142850 | Msa0591050:CDS |
| CAATTAGGAAGCATTTGGAG+AGG | 0.640013 | 4_2:+15143035 | Msa0591050:CDS |
| CTTAACCTGAGCAATTCCAT+GGG | 0.650971 | 4_2:-15142806 | None:intergenic |
| GGAGAGGAACAGGAAGGACA+AGG | 0.660004 | 4_2:+15143051 | Msa0591050:CDS |
| GCATTTGGAGAGGAACAGGA+AGG | 0.678718 | 4_2:+15143045 | Msa0591050:CDS |
| ATCATGGGTCGTATGCACAG+TGG | 0.744971 | 4_2:+15139108 | Msa0591050:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTAAATTTTTTTAAA+GGG | - | chr4_2:15139318-15139337 | None:intergenic | 0.0% |
| !!! | TAAAAATTAAATTTTTTTAA+AGG | - | chr4_2:15139319-15139338 | None:intergenic | 0.0% |
| !!! | TATATATATATATAAATTTT+TGG | + | chr4_2:15141876-15141895 | Msa0591050:intron | 0.0% |
| !!! | ATATATATATATAAATTTTT+GGG | + | chr4_2:15141877-15141896 | Msa0591050:intron | 0.0% |
| !!! | TTTCTGATTTTTTATTTTAT+TGG | + | chr4_2:15139345-15139364 | Msa0591050:intron | 10.0% |
| !!! | TTCTGATTTTTTATTTTATT+GGG | + | chr4_2:15139346-15139365 | Msa0591050:intron | 10.0% |
| !! | AGAAAAAATTAATTTAGATT+GGG | - | chr4_2:15140461-15140480 | None:intergenic | 10.0% |
| !! | AAGAAAAAATTAATTTAGAT+TGG | - | chr4_2:15140462-15140481 | None:intergenic | 10.0% |
| !!! | ATTTAAAATTTAAATGCATT+CGG | - | chr4_2:15140735-15140754 | None:intergenic | 10.0% |
| !!! | AATGCATTTAAATTTTAAAT+TGG | + | chr4_2:15140735-15140754 | Msa0591050:intron | 10.0% |
| !! | AAAAACTAAAATAAAATCTA+AGG | - | chr4_2:15141273-15141292 | None:intergenic | 10.0% |
| !!! | TTTATGTCAATTTTATATTT+AGG | + | chr4_2:15141449-15141468 | Msa0591050:intron | 10.0% |
| !!! | ATTTTTTATCATTAATGTTA+AGG | + | chr4_2:15141701-15141720 | Msa0591050:intron | 10.0% |
| !!! | TTTTTTTTTATCGATTTATT+AGG | + | chr4_2:15143204-15143223 | Msa0591050:intron | 10.0% |
| !!! | ATAGAAAATTTAAAACTAAT+GGG | - | chr4_2:15143941-15143960 | None:intergenic | 10.0% |
| !!! | AATAGAAAATTTAAAACTAA+TGG | - | chr4_2:15143942-15143961 | None:intergenic | 10.0% |
| !!! | TTTACTTTGTTATGAAAATT+TGG | + | chr4_2:15139984-15140003 | Msa0591050:intron | 15.0% |
| !!! | TTTTGATACATAAATTTTAG+AGG | - | chr4_2:15141310-15141329 | None:intergenic | 15.0% |
| !! | AAAATTTATGTATCAAAACT+TGG | + | chr4_2:15141312-15141331 | Msa0591050:intron | 15.0% |
| !! | AAATTTATGTATCAAAACTT+GGG | + | chr4_2:15141313-15141332 | Msa0591050:intron | 15.0% |
| !!! | TTTTAATTTCATACTGAAAA+AGG | - | chr4_2:15142217-15142236 | None:intergenic | 15.0% |
| !! | TATCATTAATATCTTCTTAT+AGG | - | chr4_2:15142384-15142403 | None:intergenic | 15.0% |
| !! | AACATTATAAAGATAAAATG+TGG | - | chr4_2:15143514-15143533 | None:intergenic | 15.0% |
| !!! | TTTTTTCAACTTATTGTCAT+AGG | - | chr4_2:15139727-15139746 | None:intergenic | 20.0% |
| !!! | TCTCAATTAATTTTGTCTTT+AGG | + | chr4_2:15139870-15139889 | Msa0591050:intron | 20.0% |
| !!! | ATTTAAATTTTAAATTGGCG+TGG | + | chr4_2:15140740-15140759 | Msa0591050:intron | 20.0% |
| !!! | AAAAGTGCATAAATTCAAAA+GGG | - | chr4_2:15141024-15141043 | None:intergenic | 20.0% |
| !!! | AAAAAGTGCATAAATTCAAA+AGG | - | chr4_2:15141025-15141044 | None:intergenic | 20.0% |
| !! | GTTAATTGTTAACTTATTGT+CGG | + | chr4_2:15141062-15141081 | Msa0591050:intron | 20.0% |
| !! | TTAATTGTTAACTTATTGTC+GGG | + | chr4_2:15141063-15141082 | Msa0591050:intron | 20.0% |
| !!! | TATGTTTAATTGTTTCTACT+AGG | + | chr4_2:15141182-15141201 | Msa0591050:intron | 20.0% |
| !!! | TCATTTTTTTTATCTACATG+TGG | + | chr4_2:15141675-15141694 | Msa0591050:intron | 20.0% |
| !!! | ATACTCATATTTCTCTTTTT+GGG | + | chr4_2:15142130-15142149 | Msa0591050:intron | 20.0% |
| !!! | TTTTGTCAATTTTCGTTTTT+TGG | - | chr4_2:15142577-15142596 | None:intergenic | 20.0% |
| !!! | ACTGAATTTTTTTATTTGCT+TGG | + | chr4_2:15143247-15143266 | Msa0591050:intron | 20.0% |
| !!! | ATTTAAAACCAAGAAAATTC+AGG | - | chr4_2:15143282-15143301 | None:intergenic | 20.0% |
| !!! | GTATTCTCTATCTTAATTTT+TGG | + | chr4_2:15143556-15143575 | Msa0591050:intron | 20.0% |
| !!! | TAAATTTTTGTTCCTGATTA+AGG | + | chr4_2:15143648-15143667 | Msa0591050:intron | 20.0% |
| !!! | TTCATGTGATTTTGAAATTT+TGG | + | chr4_2:15143830-15143849 | Msa0591050:three_prime_UTR | 20.0% |
| !!! | AAAGAGAGTATATCAATTAA+AGG | - | chr4_2:15143914-15143933 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTTCTATTGCCA+TGG | + | chr4_2:15143946-15143965 | Msa0591050:three_prime_UTR | 20.0% |
| !! | ACTTAGAATAAATATACATC+CGG | - | chr4_2:15144035-15144054 | None:intergenic | 20.0% |
| !! | TGTATATTTATTCTAAGTGA+TGG | + | chr4_2:15144037-15144056 | Msa0591050:three_prime_UTR | 20.0% |
| !!! | TGATTTAGTTTTTTGACACT+CGG | + | chr4_2:15139563-15139582 | Msa0591050:intron | 25.0% |
| ! | CTAGACATTACAAAAAGAAT+TGG | - | chr4_2:15139898-15139917 | None:intergenic | 25.0% |
| ! | GCTTATGAAATTTGTCATTA+TGG | + | chr4_2:15140375-15140394 | Msa0591050:intron | 25.0% |
| ! | TCTTTCATTAATCACTTTAG+TGG | + | chr4_2:15140478-15140497 | Msa0591050:intron | 25.0% |
| ! | TTCATGTTAATAGATCAGTA+AGG | + | chr4_2:15140636-15140655 | Msa0591050:intron | 25.0% |
| ! | TCATGTTAATAGATCAGTAA+GGG | + | chr4_2:15140637-15140656 | Msa0591050:intron | 25.0% |
| !!! | TTGTGTTTTTTAATGTAGTC+TGG | + | chr4_2:15140677-15140696 | Msa0591050:intron | 25.0% |
| ! | AATTTAAATGCATTCGGATT+AGG | - | chr4_2:15140729-15140748 | None:intergenic | 25.0% |
| ! | AAAGTGCATAAATTCAAAAG+GGG | - | chr4_2:15141023-15141042 | None:intergenic | 25.0% |
| ! | ACAATTAACTACAGAAATAC+TGG | - | chr4_2:15141051-15141070 | None:intergenic | 25.0% |
| !! | CATACTCATATTTCTCTTTT+TGG | + | chr4_2:15142129-15142148 | Msa0591050:intron | 25.0% |
| !! | TACTCATATTTCTCTTTTTG+GGG | + | chr4_2:15142131-15142150 | Msa0591050:intron | 25.0% |
| !! | GCATTTTCTTCTTTGTTAAA+AGG | - | chr4_2:15142259-15142278 | None:intergenic | 25.0% |
| ! | TAACAGTATAACACTTAACA+TGG | + | chr4_2:15142279-15142298 | Msa0591050:intron | 25.0% |
| !!! | TCTTTAATTTCTCTTTTCCT+AGG | + | chr4_2:15142959-15142978 | Msa0591050:intron | 25.0% |
| !!! | CTTTAATTTCTCTTTTCCTA+GGG | + | chr4_2:15142960-15142979 | Msa0591050:intron | 25.0% |
| ! | AATACTTACTATTTCCATAC+TGG | - | chr4_2:15143157-15143176 | None:intergenic | 25.0% |
| !!! | TTTTATTTGCTTGGTTTTGA+AGG | + | chr4_2:15143256-15143275 | Msa0591050:intron | 25.0% |
| !! | AAGTTCATTAGCTTATAGAA+AGG | - | chr4_2:15143343-15143362 | None:intergenic | 25.0% |
| !!! | AAGCTTGTTGAAATAAGTTT+AGG | + | chr4_2:15143389-15143408 | Msa0591050:intron | 25.0% |
| ! | AACAATGATATATTCCTGTT+TGG | - | chr4_2:15143445-15143464 | None:intergenic | 25.0% |
| ! | ATTAGAAATGAGATGCAAAA+TGG | - | chr4_2:15143679-15143698 | None:intergenic | 25.0% |
| ! | TCTCATTTCTAATACTTGTT+TGG | + | chr4_2:15143686-15143705 | Msa0591050:intron | 25.0% |
| ! | TAAATTCATTTGTAAGACCA+TGG | - | chr4_2:15143966-15143985 | None:intergenic | 25.0% |
| !! | TAGTATTCTTCTATCTGTTT+TGG | + | chr4_2:15143997-15144016 | Msa0591050:three_prime_UTR | 25.0% |
| !!! | TTTTGTGTTTTGTTTCAGCA+AGG | + | chr4_2:15139209-15139228 | Msa0591050:intron | 30.0% |
| !!! | TTTGTGTTTTGTTTCAGCAA+GGG | + | chr4_2:15139210-15139229 | Msa0591050:intron | 30.0% |
| ! | TTTCGATTTTCATACATCCT+GGG | - | chr4_2:15139295-15139314 | None:intergenic | 30.0% |
| !!! | TTGGGTTTTTTGTTAAATGC+TGG | + | chr4_2:15139364-15139383 | Msa0591050:intron | 30.0% |
| TTTATGAGATTTGTAACGTG+TGG | + | chr4_2:15139467-15139486 | Msa0591050:intron | 30.0% | |
| CTAATGCAAGCTTATACTTA+GGG | - | chr4_2:15139631-15139650 | None:intergenic | 30.0% | |
| ! | TAAGCTTTATGATACTCTCA+GGG | - | chr4_2:15139788-15139807 | None:intergenic | 30.0% |
| ! | ATAAGCTTTATGATACTCTC+AGG | - | chr4_2:15139789-15139808 | None:intergenic | 30.0% |
| ATCATAAAGCTTATGTCAGT+AGG | + | chr4_2:15139795-15139814 | Msa0591050:intron | 30.0% | |
| TCATAAAGCTTATGTCAGTA+GGG | + | chr4_2:15139796-15139815 | Msa0591050:intron | 30.0% | |
| ATATAAGCCAATTCAAACAG+TGG | + | chr4_2:15139825-15139844 | Msa0591050:intron | 30.0% | |
| AAAAAGTCCACTGTTTGAAT+TGG | - | chr4_2:15139835-15139854 | None:intergenic | 30.0% | |
| !! | TTCTTTGAAACTAGAGAGTA+AGG | + | chr4_2:15140037-15140056 | Msa0591050:intron | 30.0% |
| !! | TCTTTGAAACTAGAGAGTAA+GGG | + | chr4_2:15140038-15140057 | Msa0591050:intron | 30.0% |
| !! | TTCTTTGAAACTAGAGAGTA+AGG | + | chr4_2:15140037-15140056 | Msa0591050:intron | 30.0% |
| !! | TCTTTGAAACTAGAGAGTAA+GGG | + | chr4_2:15140038-15140057 | Msa0591050:intron | 30.0% |
| GATTGGGATGAAAATCTAAA+AGG | - | chr4_2:15140445-15140464 | None:intergenic | 30.0% | |
| GAAAACAATAGAACTGTGTT+TGG | + | chr4_2:15140559-15140578 | Msa0591050:intron | 30.0% | |
| !! | ATGCAGTGTTGTTTACTTTA+TGG | + | chr4_2:15140889-15140908 | Msa0591050:intron | 30.0% |
| !! | TGCAGTGTTGTTTACTTTAT+GGG | + | chr4_2:15140890-15140909 | Msa0591050:intron | 30.0% |
| AAAGGGCTCAGAAAAATAAT+GGG | - | chr4_2:15140981-15141000 | None:intergenic | 30.0% | |
| AAAAGGGCTCAGAAAAATAA+TGG | - | chr4_2:15140982-15141001 | None:intergenic | 30.0% | |
| !!! | GATGAAAATTTGGTTTTCGA+TGG | + | chr4_2:15141145-15141164 | Msa0591050:intron | 30.0% |
| AATGTACTATGTGCTTACAA+AGG | - | chr4_2:15141498-15141517 | None:intergenic | 30.0% | |
| ACATTCCAAAGATTTAATCG+AGG | + | chr4_2:15141513-15141532 | Msa0591050:intron | 30.0% | |
| ATTCTCCTCGATTAAATCTT+TGG | - | chr4_2:15141521-15141540 | None:intergenic | 30.0% | |
| !! | ACTTCTATTTCTGTAAACAC+AGG | - | chr4_2:15141586-15141605 | None:intergenic | 30.0% |
| !! | TAAAAAAAGCATCAGAGTCA+TGG | - | chr4_2:15141804-15141823 | None:intergenic | 30.0% |
| ! | ACTCATATTTCTCTTTTTGG+GGG | + | chr4_2:15142132-15142151 | Msa0591050:intron | 30.0% |
| GTTCAGTTTGATACTTTGAT+TGG | + | chr4_2:15142162-15142181 | Msa0591050:intron | 30.0% | |
| CATTAAAAAAGGTCTGCAAT+TGG | + | chr4_2:15142314-15142333 | Msa0591050:intron | 30.0% | |
| ! | CCTAGTTAATCTTTTAGATC+CGG | - | chr4_2:15142422-15142441 | None:intergenic | 30.0% |
| GTGTTTACAGATCATAAAAG+TGG | - | chr4_2:15142631-15142650 | None:intergenic | 30.0% | |
| ! | CTTTTATGATCTGTAAACAC+TGG | + | chr4_2:15142631-15142650 | Msa0591050:intron | 30.0% |
| AGAATAACACCAATTTGAGA+TGG | - | chr4_2:15142778-15142797 | None:intergenic | 30.0% | |
| !! | TTAGGCTTGATTAATTTGTG+AGG | + | chr4_2:15143222-15143241 | Msa0591050:intron | 30.0% |
| ! | AGTGCTTGTAAGCTATATTT+TGG | + | chr4_2:15143366-15143385 | Msa0591050:intron | 30.0% |
| !! | TATTTTAGGTAGATCCAAAC+AGG | + | chr4_2:15143428-15143447 | Msa0591050:intron | 30.0% |
| GGTTGTTTAAACTTATCTCA+TGG | - | chr4_2:15143470-15143489 | None:intergenic | 30.0% | |
| AAATGAAGTAACATGTTGCA+AGG | - | chr4_2:15143592-15143611 | None:intergenic | 30.0% | |
| AAAATGGCAATTCCTTAATC+AGG | - | chr4_2:15143663-15143682 | None:intergenic | 30.0% | |
| !!! | TGTGATGTTAGTTTTGATGA+TGG | + | chr4_2:15143880-15143899 | Msa0591050:three_prime_UTR | 30.0% |
| !! | GTTTTGGTGAAAATTTTGTC+CGG | + | chr4_2:15144013-15144032 | Msa0591050:three_prime_UTR | 30.0% |
| GAGAAGAAGAAGAAGAAGAA+AGG | - | chr4_2:15139077-15139096 | None:intergenic | 35.0% | |
| TTCTCCTCAATCATTCATCA+TGG | + | chr4_2:15139092-15139111 | Msa0591050:exon | 35.0% | |
| TCTCCTCAATCATTCATCAT+GGG | + | chr4_2:15139093-15139112 | Msa0591050:exon | 35.0% | |
| ! | GTTTCGATTTTCATACATCC+TGG | - | chr4_2:15139296-15139315 | None:intergenic | 35.0% |
| GCTAATGCAAGCTTATACTT+AGG | - | chr4_2:15139632-15139651 | None:intergenic | 35.0% | |
| CTGAATAAGCCAATTCAAAC+AGG | + | chr4_2:15140401-15140420 | Msa0591050:intron | 35.0% | |
| GCTAACTCTAGCAAAAACAT+TGG | + | chr4_2:15140585-15140604 | Msa0591050:intron | 35.0% | |
| !! | TTGTCGGGTGTTGTTTAAAT+TGG | + | chr4_2:15141078-15141097 | Msa0591050:intron | 35.0% |
| !! | TGTCGGGTGTTGTTTAAATT+GGG | + | chr4_2:15141079-15141098 | Msa0591050:intron | 35.0% |
| AATTGGGGTACAAAAAGATG+TGG | + | chr4_2:15141095-15141114 | Msa0591050:intron | 35.0% | |
| ATTGGGGTACAAAAAGATGT+GGG | + | chr4_2:15141096-15141115 | Msa0591050:intron | 35.0% | |
| GCTATAAACTCATCCTTGAA+AGG | + | chr4_2:15141420-15141439 | Msa0591050:intron | 35.0% | |
| ! | ACATAAAGCACTTCCTTTCA+AGG | - | chr4_2:15141436-15141455 | None:intergenic | 35.0% |
| ATCGAGATGCAGAAATAGAA+GGG | - | chr4_2:15141614-15141633 | None:intergenic | 35.0% | |
| !! | ATCAGAGTCATGGAAGTATT+AGG | - | chr4_2:15142023-15142042 | None:intergenic | 35.0% |
| AAAAAGTAGCATCAGAGTCA+TGG | - | chr4_2:15142033-15142052 | None:intergenic | 35.0% | |
| TGCTTTCATACTCGAACTAT+TGG | - | chr4_2:15142111-15142130 | None:intergenic | 35.0% | |
| GATAATAGTCGATGAACAAC+CGG | + | chr4_2:15142400-15142419 | Msa0591050:intron | 35.0% | |
| CCGGATCTAAAAGATTAACT+AGG | + | chr4_2:15142419-15142438 | Msa0591050:intron | 35.0% | |
| ATCATCGCATCAAACATGAT+TGG | - | chr4_2:15142464-15142483 | None:intergenic | 35.0% | |
| CTGAATTATTGTTGTGATGC+AGG | - | chr4_2:15142506-15142525 | None:intergenic | 35.0% | |
| ! | TATGCGCAAAATCTTGTTTC+CGG | - | chr4_2:15142839-15142858 | None:intergenic | 35.0% |
| ! | CAAGATTTTGCGCATATTGA+AGG | + | chr4_2:15142843-15142862 | Msa0591050:CDS | 35.0% |
| TACAGATCTTCAGGAATTTC+AGG | - | chr4_2:15142992-15143011 | None:intergenic | 35.0% | |
| !! | TGTCTCAATTAGGAAGCATT+TGG | + | chr4_2:15143030-15143049 | Msa0591050:CDS | 35.0% |
| ! | CTCCAAATTCAGGCTAATTT+TGG | + | chr4_2:15143075-15143094 | Msa0591050:CDS | 35.0% |
| ! | GACCAAAATTAGCCTGAATT+TGG | - | chr4_2:15143080-15143099 | None:intergenic | 35.0% |
| TCTTCTTATAGTAACGAGCA+AGG | - | chr4_2:15143120-15143139 | None:intergenic | 35.0% | |
| ACTTACTATTTCCATACTGG+TGG | - | chr4_2:15143154-15143173 | None:intergenic | 35.0% | |
| ! | TTTGAAGGCCTGAATTTTCT+TGG | + | chr4_2:15143271-15143290 | Msa0591050:intron | 35.0% |
| CTTAATAATGCATAGAGCAG+AGG | - | chr4_2:15143491-15143510 | None:intergenic | 35.0% | |
| GTGTACATGCCTGTTTGAAT+TGG | - | chr4_2:15140413-15140432 | None:intergenic | 40.0% | |
| CTGTCAAATGGATGCTATAG+CGG | + | chr4_2:15140795-15140814 | Msa0591050:intron | 40.0% | |
| TCAGCACTGTAATATCAGAG+TGG | - | chr4_2:15140945-15140964 | None:intergenic | 40.0% | |
| !! | GTCGGGTGTTGTTTAAATTG+GGG | + | chr4_2:15141080-15141099 | Msa0591050:intron | 40.0% |
| TTGGGGTACAAAAAGATGTG+GGG | + | chr4_2:15141097-15141116 | Msa0591050:intron | 40.0% | |
| AAGTACAGCATTACAGCTTC+TGG | + | chr4_2:15141121-15141140 | Msa0591050:intron | 40.0% | |
| AGTACAGCATTACAGCTTCT+GGG | + | chr4_2:15141122-15141141 | Msa0591050:intron | 40.0% | |
| ! | AGCTTCTGGGGATGAAAATT+TGG | + | chr4_2:15141135-15141154 | Msa0591050:intron | 40.0% |
| TCGAGATGCAGAAATAGAAG+GGG | - | chr4_2:15141613-15141632 | None:intergenic | 40.0% | |
| GATCGAGATGCAGAAATAGA+AGG | - | chr4_2:15141615-15141634 | None:intergenic | 40.0% | |
| ! | GTGATGCAGGACAACATTTT+CGG | - | chr4_2:15142493-15142512 | None:intergenic | 40.0% |
| CTGATGTTCATGAATTGCAC+AGG | + | chr4_2:15142711-15142730 | Msa0591050:intron | 40.0% | |
| TTTCTTGGCAAACTTGCAGA+TGG | - | chr4_2:15142746-15142765 | None:intergenic | 40.0% | |
| ATCTGCAAGTTTGCCAAGAA+AGG | + | chr4_2:15142745-15142764 | Msa0591050:CDS | 40.0% | |
| AGATGGAGTTAGACCTTTCT+TGG | - | chr4_2:15142761-15142780 | None:intergenic | 40.0% | |
| GGTCTAACTCCATCTCAAAT+TGG | + | chr4_2:15142766-15142785 | Msa0591050:CDS | 40.0% | |
| CTTAACCTGAGCAATTCCAT+GGG | - | chr4_2:15142809-15142828 | None:intergenic | 40.0% | |
| ATCAGGTGATACAGATCTTC+AGG | - | chr4_2:15143001-15143020 | None:intergenic | 40.0% | |
| TCTGTATCACCTGATCAAGA+AGG | + | chr4_2:15143006-15143025 | Msa0591050:CDS | 40.0% | |
| TCAAGAAGGCTGTCTCAATT+AGG | + | chr4_2:15143020-15143039 | Msa0591050:CDS | 40.0% | |
| !! | CAATTAGGAAGCATTTGGAG+AGG | + | chr4_2:15143035-15143054 | Msa0591050:CDS | 40.0% |
| !! | TTGTTGATTCGCTGCAATAG+TGG | - | chr4_2:15143717-15143736 | None:intergenic | 40.0% |
| ! | ACTCTTGTTGCTTGAAGAGA+TGG | + | chr4_2:15143745-15143764 | Msa0591050:exon | 40.0% |
| ! | TTGTTGCTTGAAGAGATGGT+CGG | + | chr4_2:15143749-15143768 | Msa0591050:exon | 40.0% |
| CGACCCATGATGAATGATTG+AGG | - | chr4_2:15139099-15139118 | None:intergenic | 45.0% | |
| CTTGCTGGTGTTCTCTTGTA+AGG | - | chr4_2:15139255-15139274 | None:intergenic | 45.0% | |
| ACAAGAGAACACCAGCAAGT+TGG | + | chr4_2:15139256-15139275 | Msa0591050:CDS | 45.0% | |
| CTAGAGAGTAAGGGTCTCTT+TGG | + | chr4_2:15140047-15140066 | Msa0591050:intron | 45.0% | |
| CTAGAGAGTAAGGGTCTCTT+TGG | + | chr4_2:15140047-15140066 | Msa0591050:intron | 45.0% | |
| AAACAGGCATGTACACGCTA+AGG | + | chr4_2:15140417-15140436 | Msa0591050:intron | 45.0% | |
| AACAGGCATGTACACGCTAA+GGG | + | chr4_2:15140418-15140437 | Msa0591050:intron | 45.0% | |
| ATTGGCGTGGTCATGTGAAT+TGG | + | chr4_2:15140753-15140772 | Msa0591050:intron | 45.0% | |
| TCCTGATCAGTGCTGTCAAA+TGG | + | chr4_2:15140783-15140802 | Msa0591050:intron | 45.0% | |
| !! | TCCATTTGACAGCACTGATC+AGG | - | chr4_2:15140787-15140806 | None:intergenic | 45.0% |
| GTACAGCATTACAGCTTCTG+GGG | + | chr4_2:15141123-15141142 | Msa0591050:intron | 45.0% | |
| AACCATCCATATACCCTGTG+TGG | + | chr4_2:15141545-15141564 | Msa0591050:intron | 45.0% | |
| ! | ATTAACCAGAGTGCCACACA+GGG | - | chr4_2:15141561-15141580 | None:intergenic | 45.0% |
| CGAGATGCAGAAATAGAAGG+GGG | - | chr4_2:15141612-15141631 | None:intergenic | 45.0% | |
| GTTATTCTTCGTGACTCCCA+TGG | + | chr4_2:15142790-15142809 | Msa0591050:CDS | 45.0% | |
| CCTTAACCTGAGCAATTCCA+TGG | - | chr4_2:15142810-15142829 | None:intergenic | 45.0% | |
| CCATGGAATTGCTCAGGTTA+AGG | + | chr4_2:15142807-15142826 | Msa0591050:CDS | 45.0% | |
| TTGAGACAGCCTTCTTGATC+AGG | - | chr4_2:15143018-15143037 | None:intergenic | 45.0% | |
| AGGACAAGGACTCCAAATTC+AGG | + | chr4_2:15143065-15143084 | Msa0591050:CDS | 45.0% | |
| TATAGTAACGAGCAAGGCGA+TGG | - | chr4_2:15143114-15143133 | None:intergenic | 45.0% | |
| CAAAGAAGCTTCCACCAGTA+TGG | + | chr4_2:15143140-15143159 | Msa0591050:CDS | 45.0% | |
| ! | TCTTCAAGCAACAAGAGTGC+TGG | - | chr4_2:15143743-15143762 | None:intergenic | 45.0% |
| !!! | TTTTAATAATTAAAAGAAAA+GGG | - | chr4_2:15140998-15141017 | None:intergenic | 5.0% |
| !!! | TTTTTAATAATTAAAAGAAA+AGG | - | chr4_2:15140999-15141018 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTCATTAAAAA+AGG | + | chr4_2:15142303-15142322 | Msa0591050:intron | 5.0% |
| ATCATGGGTCGTATGCACAG+TGG | + | chr4_2:15139108-15139127 | Msa0591050:exon | 50.0% | |
| GAGATCTTGAGCCAACTTGC+TGG | - | chr4_2:15139270-15139289 | None:intergenic | 50.0% | |
| TTGGCTCAAGATCTCTACCC+AGG | + | chr4_2:15139275-15139294 | Msa0591050:CDS | 50.0% | |
| TGCCACACAGGGTATATGGA+TGG | - | chr4_2:15141550-15141569 | None:intergenic | 50.0% | |
| ! | AGAGTGCCACACAGGGTATA+TGG | - | chr4_2:15141554-15141573 | None:intergenic | 50.0% |
| ATATACCCTGTGTGGCACTC+TGG | + | chr4_2:15141553-15141572 | Msa0591050:intron | 50.0% | |
| ! | CATTAACCAGAGTGCCACAC+AGG | - | chr4_2:15141562-15141581 | None:intergenic | 50.0% |
| TGACTCCCATGGAATTGCTC+AGG | + | chr4_2:15142801-15142820 | Msa0591050:CDS | 50.0% | |
| GCTCAGGTTAAGGCTGTAAC+CGG | + | chr4_2:15142817-15142836 | Msa0591050:CDS | 50.0% | |
| ! | TTGCGCATATTGAAGGCGCA+TGG | + | chr4_2:15142850-15142869 | Msa0591050:CDS | 50.0% |
| GAATTTCAGGAGCAAGCCCT+AGG | - | chr4_2:15142979-15142998 | None:intergenic | 50.0% | |
| !! | GGAAGCATTTGGAGAGGAAC+AGG | + | chr4_2:15143041-15143060 | Msa0591050:CDS | 50.0% |
| GCATTTGGAGAGGAACAGGA+AGG | + | chr4_2:15143045-15143064 | Msa0591050:CDS | 50.0% | |
| !! | GGCTAATTTTGGTCGAGAGC+AGG | + | chr4_2:15143086-15143105 | Msa0591050:CDS | 50.0% |
| ATGGGTCGTATGCACAGTGG+CGG | + | chr4_2:15139111-15139130 | Msa0591050:CDS | 55.0% | |
| GGAGAGGAACAGGAAGGACA+AGG | + | chr4_2:15143051-15143070 | Msa0591050:CDS | 55.0% | |
| TGGGTCGTATGCACAGTGGC+GGG | + | chr4_2:15139112-15139131 | Msa0591050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 15138928 | 15144061 | 15138928 | ID=Msa0591050;Name=Msa0591050 |
| chr4_2 | mRNA | 15138928 | 15144061 | 15138928 | ID=Msa0591050-mRNA-1;Parent=Msa0591050;Name=Msa0591050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=83|1|1|1|0.8|0.66|6|302|151 |
| chr4_2 | exon | 15138928 | 15138946 | 15138928 | ID=Msa0591050-mRNA-1:exon:4310;Parent=Msa0591050-mRNA-1 |
| chr4_2 | exon | 15139047 | 15139133 | 15139047 | ID=Msa0591050-mRNA-1:exon:4311;Parent=Msa0591050-mRNA-1 |
| chr4_2 | exon | 15139227 | 15139299 | 15139227 | ID=Msa0591050-mRNA-1:exon:4312;Parent=Msa0591050-mRNA-1 |
| chr4_2 | exon | 15142733 | 15142871 | 15142733 | ID=Msa0591050-mRNA-1:exon:4313;Parent=Msa0591050-mRNA-1 |
| chr4_2 | exon | 15142981 | 15143167 | 15142981 | ID=Msa0591050-mRNA-1:exon:4314;Parent=Msa0591050-mRNA-1 |
| chr4_2 | exon | 15143726 | 15144061 | 15143726 | ID=Msa0591050-mRNA-1:exon:4315;Parent=Msa0591050-mRNA-1 |
| chr4_2 | five_prime_UTR | 15138928 | 15138946 | 15138928 | ID=Msa0591050-mRNA-1:five_prime_utr;Parent=Msa0591050-mRNA-1 |
| chr4_2 | five_prime_UTR | 15139047 | 15139110 | 15139047 | ID=Msa0591050-mRNA-1:five_prime_utr;Parent=Msa0591050-mRNA-1 |
| chr4_2 | CDS | 15139111 | 15139133 | 15139111 | ID=Msa0591050-mRNA-1:cds;Parent=Msa0591050-mRNA-1 |
| chr4_2 | CDS | 15139227 | 15139299 | 15139227 | ID=Msa0591050-mRNA-1:cds;Parent=Msa0591050-mRNA-1 |
| chr4_2 | CDS | 15142733 | 15142871 | 15142733 | ID=Msa0591050-mRNA-1:cds;Parent=Msa0591050-mRNA-1 |
| chr4_2 | CDS | 15142981 | 15143167 | 15142981 | ID=Msa0591050-mRNA-1:cds;Parent=Msa0591050-mRNA-1 |
| chr4_2 | CDS | 15143726 | 15143759 | 15143726 | ID=Msa0591050-mRNA-1:cds;Parent=Msa0591050-mRNA-1 |
| chr4_2 | three_prime_UTR | 15143760 | 15144061 | 15143760 | ID=Msa0591050-mRNA-1:three_prime_utr;Parent=Msa0591050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
