Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802480 | XP_003612702.1 | 97.436 | 390 | 6 | 2 | 1 | 390 | 1 | 386 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802480 | sp|Q8GYA6|PS13B_ARATH | 82.821 | 390 | 63 | 2 | 1 | 390 | 1 | 386 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802480 | G7K9K1 | 97.436 | 390 | 6 | 2 | 1 | 390 | 1 | 386 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705800 | Msa0802480 | 0.817570 | 3.079037e-52 | -8.615850e-47 |
| Msa0719500 | Msa0802480 | 0.861896 | 7.434966e-64 | -8.615850e-47 |
| Msa0766080 | Msa0802480 | 0.834494 | 2.902554e-56 | -8.615850e-47 |
| Msa0802480 | Msa0876170 | 0.813223 | 2.854287e-51 | -8.615850e-47 |
| Msa0802480 | Msa0915540 | 0.826953 | 2.043905e-54 | -8.615850e-47 |
| Msa0802480 | Msa0931450 | 0.842267 | 2.870462e-58 | -8.615850e-47 |
| Msa0802480 | Msa1021120 | 0.842821 | 2.045944e-58 | -8.615850e-47 |
| Msa0802480 | Msa1218170 | 0.830815 | 2.374919e-55 | -8.615850e-47 |
| Msa0802480 | Msa1374240 | 0.808597 | 2.864883e-50 | -8.615850e-47 |
| Msa0802480 | Msa1418770 | 0.818503 | 1.894327e-52 | -8.615850e-47 |
| Msa0138890 | Msa0802480 | 0.815445 | 9.209209e-52 | -8.615850e-47 |
| Msa0576280 | Msa0802480 | 0.818566 | 1.833059e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802480 | MtrunA17_Chr5g0410071 | 97.436 | 390 | 6 | 2 | 1 | 390 | 1 | 386 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802480 | AT4G19006.1 | 82.821 | 390 | 63 | 2 | 1 | 390 | 1 | 386 | 0.0 | 668 |
| Msa0802480 | AT5G45620.1 | 82.308 | 390 | 65 | 2 | 1 | 390 | 1 | 386 | 0.0 | 665 |
| Msa0802480 | AT4G19006.2 | 72.912 | 443 | 63 | 3 | 1 | 390 | 1 | 439 | 0.0 | 644 |
| Msa0802480 | AT5G45620.2 | 83.742 | 326 | 49 | 2 | 1 | 326 | 1 | 322 | 0.0 | 561 |
Find 101 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGTGCTCTTCTCTATT+TGG | 0.148267 | 5_3:+16901428 | Msa0802480:CDS |
| TGCAAGAATCTTCTGGAAAA+TGG | 0.170541 | 5_3:+16901297 | Msa0802480:CDS |
| GTACTTCGCTTAGAAATTAT+TGG | 0.177997 | 5_3:+16904291 | Msa0802480:three_prime_UTR |
| CGACAGATTAAGAGCCTTCT+AGG | 0.205081 | 5_3:+16902807 | Msa0802480:intron |
| GCAGAAACACCTGATTTAAT+TGG | 0.231748 | 5_3:+16904084 | Msa0802480:CDS |
| CTTGTCCCTTTCTGCTCTGC+TGG | 0.238406 | 5_3:+16902654 | Msa0802480:CDS |
| GGCATTTAATTCTGGTGATT+TGG | 0.264559 | 5_3:+16902869 | Msa0802480:CDS |
| TAGAAATTATTGGTTCTATA+TGG | 0.283684 | 5_3:+16904301 | Msa0802480:three_prime_UTR |
| CTGTGTATGCGAGCTATTAC+TGG | 0.301939 | 5_3:+16901358 | Msa0802480:CDS |
| CTGGGTGCAACCAAGAGTTC+TGG | 0.325908 | 5_3:+16903981 | Msa0802480:CDS |
| GAAGATTCTTGCATTCCTTT+TGG | 0.328435 | 5_3:-16901287 | None:intergenic |
| AGGGCACAGTACATGTTTCC+TGG | 0.330946 | 5_3:+16903962 | Msa0802480:CDS |
| TTGTACCATTCACCGAGTTC+AGG | 0.331765 | 5_3:-16899459 | None:intergenic |
| ACCTTGCTCAAGCTTGAATA+AGG | 0.333906 | 5_3:-16901262 | None:intergenic |
| AAAGGAATGCAAGAATCTTC+TGG | 0.334571 | 5_3:+16901290 | Msa0802480:CDS |
| CAATTTGCATCTTAATGTAT+AGG | 0.364510 | 5_3:-16901239 | None:intergenic |
| ACATAAGAAATTGTTACAAT+TGG | 0.369906 | 5_3:-16904135 | None:intergenic |
| AAAGACATACGCAAAAGATT+TGG | 0.377240 | 5_3:-16904488 | None:intergenic |
| GCTGATGCCATAACTTCTTC+TGG | 0.398801 | 5_3:-16899500 | None:intergenic |
| TTGTCCCTTTCTGCTCTGCT+GGG | 0.405367 | 5_3:+16902655 | Msa0802480:CDS |
| GCAAGAATCTTCTGGAAAAT+GGG | 0.416747 | 5_3:+16901298 | Msa0802480:CDS |
| ATGTTGCATCAGTTTGAAAC+AGG | 0.425071 | 5_3:+16904340 | Msa0802480:three_prime_UTR |
| GATTATTTGCAGCCGGCCTT+CGG | 0.425648 | 5_3:+16903104 | Msa0802480:intron |
| GGGGATAACATCTACAACTT+TGG | 0.433711 | 5_3:+16902676 | Msa0802480:CDS |
| GTCTGATGGAAATTATATTC+AGG | 0.441429 | 5_3:+16902994 | Msa0802480:CDS |
| TGAACAGATAAAATCCTTAC+GGG | 0.442242 | 5_3:+16904008 | Msa0802480:CDS |
| ATTCACGATCCAATTAAATC+AGG | 0.446172 | 5_3:-16904093 | None:intergenic |
| TTCCAGGTTCATCTGATTGA+GGG | 0.450314 | 5_3:+16903922 | Msa0802480:intron |
| TTGAACAGATAAAATCCTTA+CGG | 0.468324 | 5_3:+16904007 | Msa0802480:CDS |
| TGTTCAATACCCAGAACTCT+TGG | 0.469920 | 5_3:-16903991 | None:intergenic |
| TGGGTGCAACCAAGAGTTCT+GGG | 0.471407 | 5_3:+16903982 | Msa0802480:CDS |
| ATTCCAGGTTCATCTGATTG+AGG | 0.471689 | 5_3:+16903921 | Msa0802480:intron |
| GCTGCCATTGGTTATCTTGA+AGG | 0.473495 | 5_3:+16901165 | Msa0802480:CDS |
| AAAATCCTTACGGGATCGAT+TGG | 0.484091 | 5_3:+16904017 | Msa0802480:CDS |
| ATTAAGAGCCTTCTAGGGCC+AGG | 0.485594 | 5_3:+16902813 | Msa0802480:CDS |
| CTCACCCTGAACTCGGTGAA+TGG | 0.486941 | 5_3:+16899454 | Msa0802480:CDS |
| CTGCCATTGGTTATCTTGAA+GGG | 0.488971 | 5_3:+16901166 | Msa0802480:CDS |
| TACGGGATCGATTGGACGGT+TGG | 0.490235 | 5_3:+16904025 | Msa0802480:CDS |
| ACGAAATGAAGCGCATAAGT+TGG | 0.492678 | 5_3:-16904223 | None:intergenic |
| TGTACCATTCACCGAGTTCA+GGG | 0.493012 | 5_3:-16899458 | None:intergenic |
| TCTCGCTTGAATCGCTGCCA+TGG | 0.495058 | 5_3:+16899398 | Msa0802480:exon |
| ATCTGTACCAGAAGAAGTTA+TGG | 0.497476 | 5_3:+16899493 | Msa0802480:CDS |
| ATCAGGTGTTTCTGCCTCGA+TGG | 0.508687 | 5_3:-16904076 | None:intergenic |
| GATCAACATTCTGTGTCTGA+TGG | 0.511761 | 5_3:+16902980 | Msa0802480:CDS |
| TCAATATCACAAATCCCGTC+AGG | 0.511791 | 5_3:+16901389 | Msa0802480:CDS |
| TGTCCCTTTCTGCTCTGCTG+GGG | 0.512089 | 5_3:+16902656 | Msa0802480:CDS |
| GCTTGAGCAAGGTGACCAAA+AGG | 0.513089 | 5_3:+16901272 | Msa0802480:CDS |
| GATCGATTGGACGGTTGGAC+CGG | 0.514901 | 5_3:+16904030 | Msa0802480:CDS |
| TGTAAATACTCACAATAGGA+TGG | 0.517964 | 5_3:-16902711 | None:intergenic |
| GTCCCTTTCTGCTCTGCTGG+GGG | 0.520589 | 5_3:+16902657 | Msa0802480:CDS |
| TTACAGATAGGCTCTTCATA+AGG | 0.525497 | 5_3:-16903197 | None:intergenic |
| TAAAATCAACCTTCTCAAGT+TGG | 0.525894 | 5_3:+16901098 | Msa0802480:CDS |
| GCCTTATTCAAGCTTGAGCA+AGG | 0.527580 | 5_3:+16901261 | Msa0802480:CDS |
| GAGAAGTTCGAAGCGATTCA+AGG | 0.528592 | 5_3:-16899434 | None:intergenic |
| GAAGATACTTCCGAGTTACA+TGG | 0.529233 | 5_3:+16904190 | Msa0802480:three_prime_UTR |
| TCAAAATGAACAGAAGCTGT+TGG | 0.529532 | 5_3:+16902953 | Msa0802480:CDS |
| GGGCACAGTACATGTTTCCT+GGG | 0.529779 | 5_3:+16903963 | Msa0802480:CDS |
| CTATATATGCCCATGTAACT+CGG | 0.541168 | 5_3:-16904200 | None:intergenic |
| TCGATATCAAGAATTATGTC+AGG | 0.541395 | 5_3:+16902893 | Msa0802480:CDS |
| AATTACTTGGCAGTTACCAC+CGG | 0.544010 | 5_3:+16904566 | Msa0802480:three_prime_UTR |
| TAGTTCGATCTTCCGAAGGC+CGG | 0.546687 | 5_3:-16903116 | None:intergenic |
| CGCTCTGCAATAACACTCAA+GGG | 0.547253 | 5_3:-16903141 | None:intergenic |
| TCTCAACTGATAAAATTACT+TGG | 0.547481 | 5_3:+16904553 | Msa0802480:three_prime_UTR |
| TTCTATGCGCTGCTCTCTAG+TGG | 0.551669 | 5_3:-16901208 | None:intergenic |
| TCTGAGAAAGAAGCTGCCAT+TGG | 0.552784 | 5_3:+16901153 | Msa0802480:CDS |
| AAAACTTTCTATAGAGAATG+TGG | 0.554790 | 5_3:+16903167 | Msa0802480:CDS |
| AAGGTATTGCAGTGCAGCCA+TGG | 0.555178 | 5_3:-16899415 | None:intergenic |
| TGAGGGTATAATTGATCAAG+TGG | 0.558787 | 5_3:+16903939 | Msa0802480:CDS |
| CAAAATGTGCCAACTTGAGA+AGG | 0.559547 | 5_3:-16901107 | None:intergenic |
| CGAACTTCTCACCCTGAACT+CGG | 0.561014 | 5_3:+16899447 | Msa0802480:CDS |
| ATTTCTAAGCGAAGTACAAG+AGG | 0.561163 | 5_3:-16904285 | None:intergenic |
| GACAGATTAAGAGCCTTCTA+GGG | 0.563638 | 5_3:+16902808 | Msa0802480:intron |
| TTAAGAGCCTTCTAGGGCCA+GGG | 0.569610 | 5_3:+16902814 | Msa0802480:CDS |
| TCTAGGGCCAGGGTCAAAAG+TGG | 0.575982 | 5_3:+16902824 | Msa0802480:CDS |
| ATTCTTACTTAGGATCAGGC+TGG | 0.577048 | 5_3:+16901027 | Msa0802480:intron |
| AACTGATGCAACATGTCTCT+AGG | 0.577151 | 5_3:-16904331 | None:intergenic |
| ACCGTCCAATCGATCCCGTA+AGG | 0.577387 | 5_3:-16904022 | None:intergenic |
| GTAAATACTCACAATAGGAT+GGG | 0.577630 | 5_3:-16902710 | None:intergenic |
| TTGCTGTGATGGTTTCTCGA+CGG | 0.578421 | 5_3:+16901127 | Msa0802480:CDS |
| TCGCTCTGCAATAACACTCA+AGG | 0.579629 | 5_3:-16903142 | None:intergenic |
| TGCATCTTAATGTATAGGAT+AGG | 0.580855 | 5_3:-16901234 | None:intergenic |
| TCTCTCTGACTCATTCAAGC+TGG | 0.583254 | 5_3:+16901470 | Msa0802480:CDS |
| TCCTTACGGGATCGATTGGA+CGG | 0.584260 | 5_3:+16904021 | Msa0802480:CDS |
| AAACTCAGCAAATTCCTGAC+GGG | 0.585720 | 5_3:-16901403 | None:intergenic |
| TGATGACAAAACTATGTACC+TGG | 0.586276 | 5_3:+16904382 | Msa0802480:three_prime_UTR |
| TGCCATTGGTTATCTTGAAG+GGG | 0.587336 | 5_3:+16901167 | Msa0802480:CDS |
| TAATAGCTCGCATACACAGT+TGG | 0.595991 | 5_3:-16901354 | None:intergenic |
| CTATTTGGCATACACATCAG+TGG | 0.599964 | 5_3:+16901443 | Msa0802480:CDS |
| GGCCAGGGTCAAAAGTGGAA+TGG | 0.600287 | 5_3:+16902829 | Msa0802480:CDS |
| TGTGTATGCGAGCTATTACT+GGG | 0.603316 | 5_3:+16901359 | Msa0802480:CDS |
| GACCCCTTCAAGATAACCAA+TGG | 0.621964 | 5_3:-16901169 | None:intergenic |
| AAAACTCAGCAAATTCCTGA+CGG | 0.624927 | 5_3:-16901404 | None:intergenic |
| AAGATACTTCCGAGTTACAT+GGG | 0.632024 | 5_3:+16904191 | Msa0802480:three_prime_UTR |
| GGTATAATTGATCAAGTGGA+GGG | 0.641521 | 5_3:+16903943 | Msa0802480:CDS |
| GGAATAGTTCGATCTTCCGA+AGG | 0.642595 | 5_3:-16903120 | None:intergenic |
| GGGTATAATTGATCAAGTGG+AGG | 0.645121 | 5_3:+16903942 | Msa0802480:CDS |
| CGCGGCGTTGTTGTCCATCG+AGG | 0.648030 | 5_3:+16904062 | Msa0802480:CDS |
| TGAATGGTACAATTCTCTTG+CGG | 0.666797 | 5_3:+16899470 | Msa0802480:CDS |
| CAGAACTCTTGGTTGCACCC+AGG | 0.676624 | 5_3:-16903980 | None:intergenic |
| GTTAAAGCGAACACATCCTG+AGG | 0.705912 | 5_3:+16904156 | Msa0802480:three_prime_UTR |
| TTGGACCGGAAAAGTACACG+CGG | 0.778962 | 5_3:+16904044 | Msa0802480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CACTTTTTATTATATTATTA+TGG | + | chr5_3:16900076-16900095 | Msa0802480:intron | 10.0% |
| !! | AGTAACAAAAATTAAACTAT+TGG | - | chr5_3:16899604-16899623 | None:intergenic | 15.0% |
| !!! | TCTATTTTGTTTTGTTTTTT+AGG | + | chr5_3:16899715-16899734 | Msa0802480:intron | 15.0% |
| !!! | CTATTTTGTTTTGTTTTTTA+GGG | + | chr5_3:16899716-16899735 | Msa0802480:intron | 15.0% |
| !!! | TACTATATGAAATTGAATTT+TGG | + | chr5_3:16899851-16899870 | Msa0802480:intron | 15.0% |
| !!! | ACTATATGAAATTGAATTTT+GGG | + | chr5_3:16899852-16899871 | Msa0802480:intron | 15.0% |
| !! | ACTAAAATCAAATGAAAATT+TGG | - | chr5_3:16900798-16900817 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTGATTTTAGTT+CGG | + | chr5_3:16900799-16900818 | Msa0802480:intron | 15.0% |
| !! | GTTTATAATTATTTGTTTGA+CGG | + | chr5_3:16901001-16901020 | Msa0802480:intron | 15.0% |
| !!! | CCTTTTTTGAATTTATATAT+CGG | - | chr5_3:16902198-16902217 | None:intergenic | 15.0% |
| !! | CGATATATAAATTCAAAAAA+GGG | + | chr5_3:16902196-16902215 | Msa0802480:intron | 15.0% |
| !! | ATAATTATGAAAAACCAATT+AGG | - | chr5_3:16902408-16902427 | None:intergenic | 15.0% |
| !! | GTGTATTAATTTAATAAGTA+AGG | - | chr5_3:16902471-16902490 | None:intergenic | 15.0% |
| !! | TACTTATTAAATTAATACAC+AGG | + | chr5_3:16902471-16902490 | Msa0802480:intron | 15.0% |
| !!! | GTTATGTTTTTATTGAAAAT+TGG | + | chr5_3:16902507-16902526 | Msa0802480:intron | 15.0% |
| !!! | TGCTTTTATTTTTTGTATTT+TGG | + | chr5_3:16903574-16903593 | Msa0802480:intron | 15.0% |
| !! | GGAATAAATTTATTCATATA+AGG | - | chr5_3:16903906-16903925 | None:intergenic | 15.0% |
| !! | TATATGAATAAATTTATTCC+AGG | + | chr5_3:16903906-16903925 | Msa0802480:intron | 15.0% |
| !!! | AAATTCTATTCTCTGTTTTA+AGG | - | chr5_3:16899331-16899350 | None:intergenic | 20.0% |
| !!! | GTTACTTAGTTTTAATTTTG+CGG | + | chr5_3:16899618-16899637 | Msa0802480:intron | 20.0% |
| !!! | TTTTGCGGTTTATTAAAATT+AGG | + | chr5_3:16899633-16899652 | Msa0802480:intron | 20.0% |
| !! | TTTGCGGTTTATTAAAATTA+GGG | + | chr5_3:16899634-16899653 | Msa0802480:intron | 20.0% |
| !!! | ATTTAGAATTAGGATTTTGT+TGG | + | chr5_3:16899884-16899903 | Msa0802480:intron | 20.0% |
| !!! | ATTTTGGGTTTTTTTTGTTT+TGG | + | chr5_3:16899915-16899934 | Msa0802480:intron | 20.0% |
| !!! | TTTGGATTTGTATTTTTGTT+TGG | + | chr5_3:16899933-16899952 | Msa0802480:intron | 20.0% |
| !!! | TTGGATTTGTATTTTTGTTT+GGG | + | chr5_3:16899934-16899953 | Msa0802480:intron | 20.0% |
| !!! | TATTATTATGGTTTGAGATA+TGG | + | chr5_3:16900088-16900107 | Msa0802480:intron | 20.0% |
| !! | CATTTATAAAAAGATTGCAA+GGG | - | chr5_3:16900202-16900221 | None:intergenic | 20.0% |
| !! | TAATCTACTAAAGAATCTAA+AGG | - | chr5_3:16900362-16900381 | None:intergenic | 20.0% |
| !!! | GTTTCTCTTATACATTTTAT+AGG | - | chr5_3:16900443-16900462 | None:intergenic | 20.0% |
| !! | AATGTATAAGAGAAACTATT+AGG | + | chr5_3:16900447-16900466 | Msa0802480:intron | 20.0% |
| !! | ATGTGATAAAAATATTAGAC+AGG | - | chr5_3:16900641-16900660 | None:intergenic | 20.0% |
| !! | ATTAGAAGAAATAAGAAACA+GGG | - | chr5_3:16900922-16900941 | None:intergenic | 20.0% |
| !! | TATTAGAAGAAATAAGAAAC+AGG | - | chr5_3:16900923-16900942 | None:intergenic | 20.0% |
| !! | AATTATCACACTAAAATTCA+TGG | - | chr5_3:16900954-16900973 | None:intergenic | 20.0% |
| !!! | ACTAATTCAAAAGTAGTTTT+GGG | - | chr5_3:16901850-16901869 | None:intergenic | 20.0% |
| !!! | AACTAATTCAAAAGTAGTTT+TGG | - | chr5_3:16901851-16901870 | None:intergenic | 20.0% |
| !! | CCGATATATAAATTCAAAAA+AGG | + | chr5_3:16902195-16902214 | Msa0802480:intron | 20.0% |
| !! | AAAAAAAATCATAGACAAGT+TGG | - | chr5_3:16902584-16902603 | None:intergenic | 20.0% |
| !!! | TTTTTTAAATGCTTCTTATC+TGG | + | chr5_3:16902740-16902759 | Msa0802480:intron | 20.0% |
| !!! | CAAATTTTGCTATTCAAATT+TGG | + | chr5_3:16903546-16903565 | Msa0802480:intron | 20.0% |
| !! | CAAAATTTCAACATTAACAA+TGG | - | chr5_3:16903650-16903669 | None:intergenic | 20.0% |
| !!! | CATTGTTAATGTTGAAATTT+TGG | + | chr5_3:16903648-16903667 | Msa0802480:intron | 20.0% |
| !!! | GCAAACTTCTTTTTTTAAAA+TGG | - | chr5_3:16903837-16903856 | None:intergenic | 20.0% |
| !! | ACATAAGAAATTGTTACAAT+TGG | - | chr5_3:16904138-16904157 | None:intergenic | 20.0% |
| !!! | TAGAAATTATTGGTTCTATA+TGG | + | chr5_3:16904301-16904320 | Msa0802480:three_prime_UTR | 20.0% |
| ! | AATTAGGGTTTCTGTTAATT+TGG | + | chr5_3:16899649-16899668 | Msa0802480:intron | 25.0% |
| ! | ATTAGGGTTTCTGTTAATTT+GGG | + | chr5_3:16899650-16899669 | Msa0802480:intron | 25.0% |
| !!! | TTTGTTTTTTAGGGTTTGAT+TGG | + | chr5_3:16899725-16899744 | Msa0802480:intron | 25.0% |
| !! | TTTGTTGGAAACTGAAATTT+TGG | + | chr5_3:16899899-16899918 | Msa0802480:intron | 25.0% |
| !! | TTGTTGGAAACTGAAATTTT+GGG | + | chr5_3:16899900-16899919 | Msa0802480:intron | 25.0% |
| !!! | TGGATTTGTATTTTTGTTTG+GGG | + | chr5_3:16899935-16899954 | Msa0802480:intron | 25.0% |
| ! | CCATTTATAAAAAGATTGCA+AGG | - | chr5_3:16900203-16900222 | None:intergenic | 25.0% |
| !! | CCTTGCAATCTTTTTATAAA+TGG | + | chr5_3:16900200-16900219 | Msa0802480:intron | 25.0% |
| ! | TGATCAAGTGTATCATAAAT+TGG | + | chr5_3:16900229-16900248 | Msa0802480:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr5_3:16900500-16900519 | None:intergenic | 25.0% |
| ! | TAAAAATATTAGACAGGCTA+AGG | - | chr5_3:16900635-16900654 | None:intergenic | 25.0% |
| ! | TCTAAACATAGATTGAACAA+TGG | - | chr5_3:16900724-16900743 | None:intergenic | 25.0% |
| ! | AATCAAATGAAAATTTGGAC+TGG | - | chr5_3:16900793-16900812 | None:intergenic | 25.0% |
| ! | CAATTTGCATCTTAATGTAT+AGG | - | chr5_3:16901242-16901261 | None:intergenic | 25.0% |
| ! | ATAAAATCCAGATTGATAAG+GGG | - | chr5_3:16901642-16901661 | None:intergenic | 25.0% |
| ! | CATAAAATCCAGATTGATAA+GGG | - | chr5_3:16901643-16901662 | None:intergenic | 25.0% |
| ! | TCATAAAATCCAGATTGATA+AGG | - | chr5_3:16901644-16901663 | None:intergenic | 25.0% |
| !! | ATCAATCTGGATTTTATGAT+TGG | + | chr5_3:16901645-16901664 | Msa0802480:intron | 25.0% |
| !! | TCAATCTGGATTTTATGATT+GGG | + | chr5_3:16901646-16901665 | Msa0802480:intron | 25.0% |
| ! | TCTTTACATCATAGAAACTT+AGG | + | chr5_3:16901670-16901689 | Msa0802480:intron | 25.0% |
| ! | TGTATGCCGATATAAAAAAA+AGG | + | chr5_3:16901987-16902006 | Msa0802480:intron | 25.0% |
| ! | GTATGCCGATATAAAAAAAA+GGG | + | chr5_3:16901988-16902007 | Msa0802480:intron | 25.0% |
| !!! | AACTTTAAGGTACTTTCTAA+TGG | - | chr5_3:16902233-16902252 | None:intergenic | 25.0% |
| ! | AATACACAGGACTTATAATA+AGG | + | chr5_3:16902484-16902503 | Msa0802480:intron | 25.0% |
| ! | ATACACAGGACTTATAATAA+GGG | + | chr5_3:16902485-16902504 | Msa0802480:intron | 25.0% |
| ! | TTAACTAATATCATATCTGC+TGG | - | chr5_3:16902615-16902634 | None:intergenic | 25.0% |
| ! | GATATGATATTAGTTAATGC+AGG | + | chr5_3:16902618-16902637 | Msa0802480:intron | 25.0% |
| ! | ATATTAGTTAATGCAGGATT+TGG | + | chr5_3:16902624-16902643 | Msa0802480:intron | 25.0% |
| ! | ATGATGTAAATACTCACAAT+AGG | - | chr5_3:16902718-16902737 | None:intergenic | 25.0% |
| ! | TTTATTTCCAACTCAATTGA+TGG | + | chr5_3:16903080-16903099 | Msa0802480:intron | 25.0% |
| ! | AAAACTTTCTATAGAGAATG+TGG | + | chr5_3:16903167-16903186 | Msa0802480:CDS | 25.0% |
| ! | TAGCAAAATTTGTCATTAGA+TGG | - | chr5_3:16903538-16903557 | None:intergenic | 25.0% |
| ! | TAACAATGGAAGGTAAAAAA+AGG | - | chr5_3:16903636-16903655 | None:intergenic | 25.0% |
| ! | ATTTCAACATTAACAATGGA+AGG | - | chr5_3:16903646-16903665 | None:intergenic | 25.0% |
| ! | TACCTAGATGTTCATAATTA+AGG | + | chr5_3:16903763-16903782 | Msa0802480:intron | 25.0% |
| ! | ATCCTTAATTATGAACATCT+AGG | - | chr5_3:16903768-16903787 | None:intergenic | 25.0% |
| ! | ACTTCACAAACAAAACAAAA+AGG | - | chr5_3:16903859-16903878 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGTTTGTGAAGT+TGG | + | chr5_3:16903859-16903878 | Msa0802480:intron | 25.0% |
| ! | TTGAACAGATAAAATCCTTA+CGG | + | chr5_3:16904007-16904026 | Msa0802480:CDS | 25.0% |
| ! | ACTCCTAAAGTGATTAAAAA+TGG | - | chr5_3:16904426-16904445 | None:intergenic | 25.0% |
| ! | TCTCAACTGATAAAATTACT+TGG | + | chr5_3:16904553-16904572 | Msa0802480:three_prime_UTR | 25.0% |
| ! | TGACGATTTTGTTGATGTTA+GGG | + | chr5_3:16899689-16899708 | Msa0802480:intron | 30.0% |
| TTTGATTGGAATTGTGGTAA+AGG | + | chr5_3:16899739-16899758 | Msa0802480:intron | 30.0% | |
| !! | TGAAATTGAATTTTGGGTGT+TGG | + | chr5_3:16899858-16899877 | Msa0802480:intron | 30.0% |
| !! | GAAATTGAATTTTGGGTGTT+GGG | + | chr5_3:16899859-16899878 | Msa0802480:intron | 30.0% |
| !! | AAATTGAATTTTGGGTGTTG+GGG | + | chr5_3:16899860-16899879 | Msa0802480:intron | 30.0% |
| !! | ATTTGTATTTTTGTTTGGGG+AGG | + | chr5_3:16899938-16899957 | Msa0802480:intron | 30.0% |
| !! | TTTGTATTTTTGTTTGGGGA+GGG | + | chr5_3:16899939-16899958 | Msa0802480:intron | 30.0% |
| !! | TATCAATCACGTTTTCAAGA+AGG | - | chr5_3:16900122-16900141 | None:intergenic | 30.0% |
| ! | GACCAAAGATGTAGATATTT+TGG | + | chr5_3:16900158-16900177 | Msa0802480:intron | 30.0% |
| AGCCAAAATATCTACATCTT+TGG | - | chr5_3:16900163-16900182 | None:intergenic | 30.0% | |
| TTTATGATACACTTGATCAC+TGG | - | chr5_3:16900228-16900247 | None:intergenic | 30.0% | |
| CTTTAGTAGATTATGCAGTA+AGG | + | chr5_3:16900369-16900388 | Msa0802480:intron | 30.0% | |
| AGATTTAGAGATCAATGAGT+TGG | + | chr5_3:16900472-16900491 | Msa0802480:intron | 30.0% | |
| TGGTTTATGATAGAACATTC+TGG | + | chr5_3:16900504-16900523 | Msa0802480:intron | 30.0% | |
| !!! | GAGTGTCTTTATTTTCAATG+AGG | + | chr5_3:16900586-16900605 | Msa0802480:intron | 30.0% |
| ! | TGTTTAGCTTCATTCTTCAA+TGG | + | chr5_3:16900836-16900855 | Msa0802480:intron | 30.0% |
| ATAAGAAACAGGGATATCAA+TGG | - | chr5_3:16900912-16900931 | None:intergenic | 30.0% | |
| TAAAATCAACCTTCTCAAGT+TGG | + | chr5_3:16901098-16901117 | Msa0802480:CDS | 30.0% | |
| TGCATCTTAATGTATAGGAT+AGG | - | chr5_3:16901237-16901256 | None:intergenic | 30.0% | |
| ! | ATAATTTGAGACAGCACAAA+AGG | - | chr5_3:16901540-16901559 | None:intergenic | 30.0% |
| CATGCTCTTATGTTAATGTA+AGG | - | chr5_3:16901578-16901597 | None:intergenic | 30.0% | |
| ATATAGTAGTTATGCAACAC+AGG | + | chr5_3:16901745-16901764 | Msa0802480:intron | 30.0% | |
| TGTTTCTTAGTATTGTGTTG+TGG | + | chr5_3:16901954-16901973 | Msa0802480:intron | 30.0% | |
| ! | TTTTATATCGGCATACAGAT+AGG | - | chr5_3:16901984-16902003 | None:intergenic | 30.0% |
| !!! | GGTTGCCCTTTTTTTTATAT+CGG | - | chr5_3:16901996-16902015 | None:intergenic | 30.0% |
| ATATAAAAAAAAGGGCAACC+CGG | + | chr5_3:16901996-16902015 | Msa0802480:intron | 30.0% | |
| !! | TAGAAAGTACCTTAAAGTTC+AGG | + | chr5_3:16902234-16902253 | Msa0802480:intron | 30.0% |
| GTAAATACTCACAATAGGAT+GGG | - | chr5_3:16902713-16902732 | None:intergenic | 30.0% | |
| TGTAAATACTCACAATAGGA+TGG | - | chr5_3:16902714-16902733 | None:intergenic | 30.0% | |
| ! | ATTTTGCAGGCATTTAATTC+TGG | + | chr5_3:16902861-16902880 | Msa0802480:CDS | 30.0% |
| TCGATATCAAGAATTATGTC+AGG | + | chr5_3:16902893-16902912 | Msa0802480:CDS | 30.0% | |
| GTCTGATGGAAATTATATTC+AGG | + | chr5_3:16902994-16903013 | Msa0802480:CDS | 30.0% | |
| ATAATCACCATCAATTGAGT+TGG | - | chr5_3:16903090-16903109 | None:intergenic | 30.0% | |
| TGAAAGCTTACTACTTTGTA+TGG | - | chr5_3:16903262-16903281 | None:intergenic | 30.0% | |
| ATGTTATCACCAGAAGAATT+AGG | + | chr5_3:16903439-16903458 | Msa0802480:intron | 30.0% | |
| CAGAAGAATCAACTTAGTTT+AGG | - | chr5_3:16903481-16903500 | None:intergenic | 30.0% | |
| TGAACAGATAAAATCCTTAC+GGG | + | chr5_3:16904008-16904027 | Msa0802480:CDS | 30.0% | |
| ATTCACGATCCAATTAAATC+AGG | - | chr5_3:16904096-16904115 | None:intergenic | 30.0% | |
| GTACTTCGCTTAGAAATTAT+TGG | + | chr5_3:16904291-16904310 | Msa0802480:three_prime_UTR | 30.0% | |
| ! | CCTGGAATTTTTCTTAGATA+CGG | + | chr5_3:16904400-16904419 | Msa0802480:three_prime_UTR | 30.0% |
| AAAGACATACGCAAAAGATT+TGG | - | chr5_3:16904491-16904510 | None:intergenic | 30.0% | |
| TGAATGGTACAATTCTCTTG+CGG | + | chr5_3:16899470-16899489 | Msa0802480:CDS | 35.0% | |
| ATCTGTACCAGAAGAAGTTA+TGG | + | chr5_3:16899493-16899512 | Msa0802480:CDS | 35.0% | |
| GTGTATTTGGACCTGAAAAA+CGG | - | chr5_3:16899559-16899578 | None:intergenic | 35.0% | |
| ! | GAGTGAAAAGAGAGTGTATT+TGG | - | chr5_3:16899572-16899591 | None:intergenic | 35.0% |
| ATTTGGGAGTTTAGTTGAGA+CGG | + | chr5_3:16899666-16899685 | Msa0802480:intron | 35.0% | |
| ! | GTGACGATTTTGTTGATGTT+AGG | + | chr5_3:16899688-16899707 | Msa0802480:intron | 35.0% |
| TTAGGGTTTGATTGGAATTG+TGG | + | chr5_3:16899733-16899752 | Msa0802480:intron | 35.0% | |
| ATTGGAATTGTGGTAAAGGT+CGG | + | chr5_3:16899743-16899762 | Msa0802480:intron | 35.0% | |
| !! | ACTTTTGAGTGAATGGGTTT+AGG | + | chr5_3:16899767-16899786 | Msa0802480:intron | 35.0% |
| !! | CTTTTGAGTGAATGGGTTTA+GGG | + | chr5_3:16899768-16899787 | Msa0802480:intron | 35.0% |
| !!! | GGGTTTAGGGTTATTTCTTT+TGG | + | chr5_3:16899781-16899800 | Msa0802480:intron | 35.0% |
| ! | GTGTTGGGGTATTTAGAATT+AGG | + | chr5_3:16899874-16899893 | Msa0802480:intron | 35.0% |
| !!! | ATGGTGGGTTAAGATTTTAG+CGG | + | chr5_3:16899968-16899987 | Msa0802480:intron | 35.0% |
| CTGATCTACTTTCCTTACTA+CGG | - | chr5_3:16900323-16900342 | None:intergenic | 35.0% | |
| AGTAAGGAAAGTAGATCAGA+TGG | + | chr5_3:16900324-16900343 | Msa0802480:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr5_3:16900484-16900503 | Msa0802480:intron | 35.0% |
| ATCACATTCTTTGCTTCTGA+TGG | + | chr5_3:16900654-16900673 | Msa0802480:intron | 35.0% | |
| TCACATTCTTTGCTTCTGAT+GGG | + | chr5_3:16900655-16900674 | Msa0802480:intron | 35.0% | |
| TAGCAAATCTTCTCCATCAT+TGG | + | chr5_3:16900695-16900714 | Msa0802480:intron | 35.0% | |
| TGAACAATGGTTTCCAATGA+TGG | - | chr5_3:16900711-16900730 | None:intergenic | 35.0% | |
| ATATCAATGGCAAACACAGA+AGG | - | chr5_3:16900899-16900918 | None:intergenic | 35.0% | |
| ! | TTGACGGAGTATTCTTACTT+AGG | + | chr5_3:16901017-16901036 | Msa0802480:intron | 35.0% |
| GAGTATTCTTACTTAGGATC+AGG | + | chr5_3:16901023-16901042 | Msa0802480:intron | 35.0% | |
| !! | GTTGATTTTAGTCTCGAAGT+CGG | - | chr5_3:16901088-16901107 | None:intergenic | 35.0% |
| ! | GAAGATTCTTGCATTCCTTT+TGG | - | chr5_3:16901290-16901309 | None:intergenic | 35.0% |
| AAAGGAATGCAAGAATCTTC+TGG | + | chr5_3:16901290-16901309 | Msa0802480:CDS | 35.0% | |
| ! | TGCAAGAATCTTCTGGAAAA+TGG | + | chr5_3:16901297-16901316 | Msa0802480:CDS | 35.0% |
| ! | GCAAGAATCTTCTGGAAAAT+GGG | + | chr5_3:16901298-16901317 | Msa0802480:CDS | 35.0% |
| AAAACTCAGCAAATTCCTGA+CGG | - | chr5_3:16901407-16901426 | None:intergenic | 35.0% | |
| !! | CAAAAGTGCTCTTCTCTATT+TGG | + | chr5_3:16901428-16901447 | Msa0802480:CDS | 35.0% |
| ! | TAGCCAAACATCCATTTTCT+AGG | + | chr5_3:16901608-16901627 | Msa0802480:intron | 35.0% |
| ! | AGCCAAACATCCATTTTCTA+GGG | + | chr5_3:16901609-16901628 | Msa0802480:intron | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr5_3:16902088-16902107 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr5_3:16902087-16902106 | Msa0802480:intron | 35.0% |
| ATATATCGGCATACAGATGA+GGG | - | chr5_3:16902184-16902203 | None:intergenic | 35.0% | |
| TATATATCGGCATACAGATG+AGG | - | chr5_3:16902185-16902204 | None:intergenic | 35.0% | |
| GTTGGACACAGATTAATGTT+GGG | - | chr5_3:16902264-16902283 | None:intergenic | 35.0% | |
| TGTTGGACACAGATTAATGT+TGG | - | chr5_3:16902265-16902284 | None:intergenic | 35.0% | |
| CTTAACTACCATTAAGACCT+AGG | - | chr5_3:16902331-16902350 | None:intergenic | 35.0% | |
| TCAACTATCATCAGAGACAA+AGG | + | chr5_3:16902378-16902397 | Msa0802480:intron | 35.0% | |
| CAACTATCATCAGAGACAAA+GGG | + | chr5_3:16902379-16902398 | Msa0802480:intron | 35.0% | |
| ! | GATGTTTCTGCTTTAAGTAG+TGG | + | chr5_3:16902536-16902555 | Msa0802480:intron | 35.0% |
| AATTTCTTCACTCTGCTTGT+TGG | + | chr5_3:16902763-16902782 | Msa0802480:intron | 35.0% | |
| !! | ATGGCTCTACTATATTTTGC+AGG | + | chr5_3:16902848-16902867 | Msa0802480:CDS | 35.0% |
| GGCATTTAATTCTGGTGATT+TGG | + | chr5_3:16902869-16902888 | Msa0802480:CDS | 35.0% | |
| ! | TGTTCATTTTGAACTAGTGC+TGG | - | chr5_3:16902945-16902964 | None:intergenic | 35.0% |
| TCAAAATGAACAGAAGCTGT+TGG | + | chr5_3:16902953-16902972 | Msa0802480:CDS | 35.0% | |
| GTTGTCGAAATCATCACATT+CGG | + | chr5_3:16903035-16903054 | Msa0802480:intron | 35.0% | |
| TTACAGATAGGCTCTTCATA+AGG | - | chr5_3:16903200-16903219 | None:intergenic | 35.0% | |
| TTCAAGTCGAACTTACAGAT+AGG | - | chr5_3:16903212-16903231 | None:intergenic | 35.0% | |
| !! | ATTCAGTAGCGTTGATCTTT+AGG | + | chr5_3:16903405-16903424 | Msa0802480:intron | 35.0% |
| AGAAAACAGCCTAATTCTTC+TGG | - | chr5_3:16903451-16903470 | None:intergenic | 35.0% | |
| !! | AGAAGAATTAGGCTGTTTTC+TGG | + | chr5_3:16903450-16903469 | Msa0802480:intron | 35.0% |
| TGTCTTTCGATTCCTATTTC+AGG | + | chr5_3:16903693-16903712 | Msa0802480:intron | 35.0% | |
| GTCTTTCGATTCCTATTTCA+GGG | + | chr5_3:16903694-16903713 | Msa0802480:intron | 35.0% | |
| TCTAATGGAAACCCTGAAAT+AGG | - | chr5_3:16903708-16903727 | None:intergenic | 35.0% | |
| GTTTCCATTAGAAATTGCTC+TGG | + | chr5_3:16903716-16903735 | Msa0802480:intron | 35.0% | |
| CAAACCAGAGCAATTTCTAA+TGG | - | chr5_3:16903723-16903742 | None:intergenic | 35.0% | |
| CATTAGAAATTGCTCTGGTT+TGG | + | chr5_3:16903721-16903740 | Msa0802480:intron | 35.0% | |
| ! | TGAGGGTATAATTGATCAAG+TGG | + | chr5_3:16903939-16903958 | Msa0802480:CDS | 35.0% |
| GGTATAATTGATCAAGTGGA+GGG | + | chr5_3:16903943-16903962 | Msa0802480:CDS | 35.0% | |
| GCAGAAACACCTGATTTAAT+TGG | + | chr5_3:16904084-16904103 | Msa0802480:CDS | 35.0% | |
| AAGATACTTCCGAGTTACAT+GGG | + | chr5_3:16904191-16904210 | Msa0802480:three_prime_UTR | 35.0% | |
| CTATATATGCCCATGTAACT+CGG | - | chr5_3:16904203-16904222 | None:intergenic | 35.0% | |
| ATTTCTAAGCGAAGTACAAG+AGG | - | chr5_3:16904288-16904307 | None:intergenic | 35.0% | |
| ! | ATGTTGCATCAGTTTGAAAC+AGG | + | chr5_3:16904340-16904359 | Msa0802480:three_prime_UTR | 35.0% |
| TGATGACAAAACTATGTACC+TGG | + | chr5_3:16904382-16904401 | Msa0802480:three_prime_UTR | 35.0% | |
| CCGTATCTAAGAAAAATTCC+AGG | - | chr5_3:16904403-16904422 | None:intergenic | 35.0% | |
| !!! | CGGCCATTTTTAATCACTTT+AGG | + | chr5_3:16904420-16904439 | Msa0802480:three_prime_UTR | 35.0% |
| !! | GTCGGAACTTTTGAGTGAAT+GGG | + | chr5_3:16899761-16899780 | Msa0802480:intron | 40.0% |
| !!! | GGTTATTTCTTTTGGATCCG+AGG | + | chr5_3:16899789-16899808 | Msa0802480:intron | 40.0% |
| ! | TTTTTCCCCCATTTGTCGAA+TGG | + | chr5_3:16900257-16900276 | Msa0802480:intron | 40.0% |
| TCCTAAGCCATTCGACAAAT+GGG | - | chr5_3:16900267-16900286 | None:intergenic | 40.0% | |
| TTCCTAAGCCATTCGACAAA+TGG | - | chr5_3:16900268-16900287 | None:intergenic | 40.0% | |
| TCGAATGGCTTAGGAAGTTT+GGG | + | chr5_3:16900272-16900291 | Msa0802480:intron | 40.0% | |
| TTCCTTACTACGGAATCTAC+AGG | - | chr5_3:16900313-16900332 | None:intergenic | 40.0% | |
| AAGGAAAGTAGATCAGATGG+AGG | + | chr5_3:16900327-16900346 | Msa0802480:intron | 40.0% | |
| AAGTAGATCAGATGGAGGAT+AGG | + | chr5_3:16900332-16900351 | Msa0802480:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr5_3:16900385-16900404 | Msa0802480:intron | 40.0% | |
| GAGGATAGTCAGATCAAAAG+AGG | + | chr5_3:16900407-16900426 | Msa0802480:intron | 40.0% | |
| AGTCAGATCAAAAGAGGTAG+AGG | + | chr5_3:16900413-16900432 | Msa0802480:intron | 40.0% | |
| CACAGAAGGTAATAGATGAG+TGG | - | chr5_3:16900885-16900904 | None:intergenic | 40.0% | |
| ATTCTTACTTAGGATCAGGC+TGG | + | chr5_3:16901027-16901046 | Msa0802480:intron | 40.0% | |
| CAAAATGTGCCAACTTGAGA+AGG | - | chr5_3:16901110-16901129 | None:intergenic | 40.0% | |
| ! | CTGCCATTGGTTATCTTGAA+GGG | + | chr5_3:16901166-16901185 | Msa0802480:CDS | 40.0% |
| ! | TGCCATTGGTTATCTTGAAG+GGG | + | chr5_3:16901167-16901186 | Msa0802480:CDS | 40.0% |
| ACCTTGCTCAAGCTTGAATA+AGG | - | chr5_3:16901265-16901284 | None:intergenic | 40.0% | |
| TAATAGCTCGCATACACAGT+TGG | - | chr5_3:16901357-16901376 | None:intergenic | 40.0% | |
| TGTGTATGCGAGCTATTACT+GGG | + | chr5_3:16901359-16901378 | Msa0802480:CDS | 40.0% | |
| TCAATATCACAAATCCCGTC+AGG | + | chr5_3:16901389-16901408 | Msa0802480:CDS | 40.0% | |
| AAACTCAGCAAATTCCTGAC+GGG | - | chr5_3:16901406-16901425 | None:intergenic | 40.0% | |
| CTATTTGGCATACACATCAG+TGG | + | chr5_3:16901443-16901462 | Msa0802480:CDS | 40.0% | |
| CTCCCTAGAAAATGGATGTT+TGG | - | chr5_3:16901614-16901633 | None:intergenic | 40.0% | |
| AGTTTCTCCCCTTATCAATC+TGG | + | chr5_3:16901632-16901651 | Msa0802480:intron | 40.0% | |
| CAGGACAGAGATATGATATG+TGG | + | chr5_3:16901764-16901783 | Msa0802480:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr5_3:16902062-16902081 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr5_3:16902093-16902112 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr5_3:16902094-16902113 | None:intergenic | 40.0% | |
| TATATCGGCATACAGATGAG+GGG | - | chr5_3:16902183-16902202 | None:intergenic | 40.0% | |
| TTGGGCATTCCTGAACTTTA+AGG | - | chr5_3:16902246-16902265 | None:intergenic | 40.0% | |
| GAGACAAAGGGTAACCTAAT+TGG | + | chr5_3:16902391-16902410 | Msa0802480:intron | 40.0% | |
| GGACAGCATAGAAATCTTTG+TGG | - | chr5_3:16902450-16902469 | None:intergenic | 40.0% | |
| GGGGATAACATCTACAACTT+TGG | + | chr5_3:16902676-16902695 | Msa0802480:CDS | 40.0% | |
| GACAGATTAAGAGCCTTCTA+GGG | + | chr5_3:16902808-16902827 | Msa0802480:intron | 40.0% | |
| GATCAACATTCTGTGTCTGA+TGG | + | chr5_3:16902980-16902999 | Msa0802480:CDS | 40.0% | |
| ! | TGATGGTGATTATTTGCAGC+CGG | + | chr5_3:16903097-16903116 | Msa0802480:intron | 40.0% |
| AGTAGTAAGCTTTCAACTCG+TGG | + | chr5_3:16903267-16903286 | Msa0802480:intron | 40.0% | |
| GTAGTAAGCTTTCAACTCGT+GGG | + | chr5_3:16903268-16903287 | Msa0802480:intron | 40.0% | |
| ACCCTGCTTCATTTGTCAAT+CGG | + | chr5_3:16903340-16903359 | Msa0802480:intron | 40.0% | |
| AGACAAGCGAAACAGTATGT+TGG | - | chr5_3:16903678-16903697 | None:intergenic | 40.0% | |
| ATTCCAGGTTCATCTGATTG+AGG | + | chr5_3:16903921-16903940 | Msa0802480:intron | 40.0% | |
| TTCCAGGTTCATCTGATTGA+GGG | + | chr5_3:16903922-16903941 | Msa0802480:intron | 40.0% | |
| GGGTATAATTGATCAAGTGG+AGG | + | chr5_3:16903942-16903961 | Msa0802480:CDS | 40.0% | |
| TGTTCAATACCCAGAACTCT+TGG | - | chr5_3:16903994-16904013 | None:intergenic | 40.0% | |
| AAAATCCTTACGGGATCGAT+TGG | + | chr5_3:16904017-16904036 | Msa0802480:CDS | 40.0% | |
| GAAGATACTTCCGAGTTACA+TGG | + | chr5_3:16904190-16904209 | Msa0802480:three_prime_UTR | 40.0% | |
| ACGAAATGAAGCGCATAAGT+TGG | - | chr5_3:16904226-16904245 | None:intergenic | 40.0% | |
| !!! | TGCTGCTTTTGAATGATTGC+TGG | + | chr5_3:16904252-16904271 | Msa0802480:three_prime_UTR | 40.0% |
| AACTGATGCAACATGTCTCT+AGG | - | chr5_3:16904334-16904353 | None:intergenic | 40.0% | |
| GAGAAGTTCGAAGCGATTCA+AGG | - | chr5_3:16899437-16899456 | None:intergenic | 45.0% | |
| TGTACCATTCACCGAGTTCA+GGG | - | chr5_3:16899461-16899480 | None:intergenic | 45.0% | |
| TTGTACCATTCACCGAGTTC+AGG | - | chr5_3:16899462-16899481 | None:intergenic | 45.0% | |
| GCTGATGCCATAACTTCTTC+TGG | - | chr5_3:16899503-16899522 | None:intergenic | 45.0% | |
| !!! | TCTTGCTCTTGCCGTTTTTC+AGG | + | chr5_3:16899545-16899564 | Msa0802480:CDS | 45.0% |
| !! | GGTCGGAACTTTTGAGTGAA+TGG | + | chr5_3:16899760-16899779 | Msa0802480:intron | 45.0% |
| ! | TCTTTTGGATCCGAGGAAGT+TGG | + | chr5_3:16899796-16899815 | Msa0802480:intron | 45.0% |
| ! | CTTTTGGATCCGAGGAAGTT+GGG | + | chr5_3:16899797-16899816 | Msa0802480:intron | 45.0% |
| TAAACCCTACCCAACTTCCT+CGG | - | chr5_3:16899809-16899828 | None:intergenic | 45.0% | |
| AGGAAGTTGGGTAGGGTTTA+GGG | + | chr5_3:16899809-16899828 | Msa0802480:intron | 45.0% | |
| CTAAGCCATTCGACAAATGG+GGG | - | chr5_3:16900265-16900284 | None:intergenic | 45.0% | |
| CCTAAGCCATTCGACAAATG+GGG | - | chr5_3:16900266-16900285 | None:intergenic | 45.0% | |
| GTCGAATGGCTTAGGAAGTT+TGG | + | chr5_3:16900271-16900290 | Msa0802480:intron | 45.0% | |
| GACCTGTAGATTCCGTAGTA+AGG | + | chr5_3:16900308-16900327 | Msa0802480:intron | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr5_3:16900388-16900407 | Msa0802480:intron | 45.0% | |
| CTTATCCAACTAAGCGAGGT+CGG | - | chr5_3:16900549-16900568 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCAACTAAGCG+AGG | - | chr5_3:16900553-16900572 | None:intergenic | 45.0% |
| TCGCTTAGTTGGATAAGGCT+TGG | + | chr5_3:16900552-16900571 | Msa0802480:intron | 45.0% | |
| ! | GTTGGATAAGGCTTGGTTGT+TGG | + | chr5_3:16900559-16900578 | Msa0802480:intron | 45.0% |
| TAGACAGGCTAAGGATGCAA+TGG | - | chr5_3:16900626-16900645 | None:intergenic | 45.0% | |
| !! | GTTGGCACATTTTGCTGTGA+TGG | + | chr5_3:16901116-16901135 | Msa0802480:CDS | 45.0% |
| TTGCTGTGATGGTTTCTCGA+CGG | + | chr5_3:16901127-16901146 | Msa0802480:CDS | 45.0% | |
| TCTGAGAAAGAAGCTGCCAT+TGG | + | chr5_3:16901153-16901172 | Msa0802480:CDS | 45.0% | |
| ! | GCTGCCATTGGTTATCTTGA+AGG | + | chr5_3:16901165-16901184 | Msa0802480:CDS | 45.0% |
| GACCCCTTCAAGATAACCAA+TGG | - | chr5_3:16901172-16901191 | None:intergenic | 45.0% | |
| ! | GCCTTATTCAAGCTTGAGCA+AGG | + | chr5_3:16901261-16901280 | Msa0802480:CDS | 45.0% |
| CTGTGTATGCGAGCTATTAC+TGG | + | chr5_3:16901358-16901377 | Msa0802480:CDS | 45.0% | |
| TCTCTCTGACTCATTCAAGC+TGG | + | chr5_3:16901470-16901489 | Msa0802480:CDS | 45.0% | |
| GGGAGAAACTCCCTAGAAAA+TGG | - | chr5_3:16901622-16901641 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr5_3:16902063-16902082 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr5_3:16902066-16902085 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr5_3:16902098-16902117 | Msa0802480:intron | 45.0% |
| GTTGTTGTCATGTGACCGTA+AGG | - | chr5_3:16902138-16902157 | None:intergenic | 45.0% | |
| ATACAGATGAGGGGTAACCT+TGG | - | chr5_3:16902174-16902193 | None:intergenic | 45.0% | |
| GTGTTGCATTGCATTCGTGT+TGG | - | chr5_3:16902282-16902301 | None:intergenic | 45.0% | |
| ! | CTGCTTTAAGTAGTGGTCAG+AGG | + | chr5_3:16902543-16902562 | Msa0802480:intron | 45.0% |
| CGACAGATTAAGAGCCTTCT+AGG | + | chr5_3:16902807-16902826 | Msa0802480:intron | 45.0% | |
| GGAATAGTTCGATCTTCCGA+AGG | - | chr5_3:16903123-16903142 | None:intergenic | 45.0% | |
| CGCTCTGCAATAACACTCAA+GGG | - | chr5_3:16903144-16903163 | None:intergenic | 45.0% | |
| TCGCTCTGCAATAACACTCA+AGG | - | chr5_3:16903145-16903164 | None:intergenic | 45.0% | |
| TAAGCTTTCAACTCGTGGGT+TGG | + | chr5_3:16903272-16903291 | Msa0802480:intron | 45.0% | |
| AAGCTTTCAACTCGTGGGTT+GGG | + | chr5_3:16903273-16903292 | Msa0802480:intron | 45.0% | |
| GCCGATTGACAAATGAAGCA+GGG | - | chr5_3:16903344-16903363 | None:intergenic | 45.0% | |
| AGCCGATTGACAAATGAAGC+AGG | - | chr5_3:16903345-16903364 | None:intergenic | 45.0% | |
| GCAACTAGCAAGCATTAGCA+TGG | - | chr5_3:16903513-16903532 | None:intergenic | 45.0% | |
| TACCCTCAATCAGATGAACC+TGG | - | chr5_3:16903927-16903946 | None:intergenic | 45.0% | |
| GTTAAAGCGAACACATCCTG+AGG | + | chr5_3:16904156-16904175 | Msa0802480:three_prime_UTR | 45.0% | |
| ! | TCTTCGTCTTTTGTTGCCTC+AGG | - | chr5_3:16904175-16904194 | None:intergenic | 45.0% |
| !! | AAGGTATTGCAGTGCAGCCA+TGG | - | chr5_3:16899418-16899437 | None:intergenic | 50.0% |
| CGAACTTCTCACCCTGAACT+CGG | + | chr5_3:16899447-16899466 | Msa0802480:CDS | 50.0% | |
| GAGGAAGTTGGGTAGGGTTT+AGG | + | chr5_3:16899808-16899827 | Msa0802480:intron | 50.0% | |
| TGTTTGGGGAGGGATGTGAA+TGG | + | chr5_3:16899949-16899968 | Msa0802480:intron | 50.0% | |
| CCCCATTTGTCGAATGGCTT+AGG | + | chr5_3:16900263-16900282 | Msa0802480:intron | 50.0% | |
| CGACCTCGCTTAGTTGGATA+AGG | + | chr5_3:16900547-16900566 | Msa0802480:intron | 50.0% | |
| TTCTATGCGCTGCTCTCTAG+TGG | - | chr5_3:16901211-16901230 | None:intergenic | 50.0% | |
| GCTTGAGCAAGGTGACCAAA+AGG | + | chr5_3:16901272-16901291 | Msa0802480:CDS | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr5_3:16902120-16902139 | Msa0802480:intron | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | - | chr5_3:16902131-16902150 | None:intergenic | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | - | chr5_3:16902132-16902151 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr5_3:16902154-16902173 | Msa0802480:intron | 50.0% | |
| TCGTGCGTCCTAGGTCTTAA+TGG | + | chr5_3:16902320-16902339 | Msa0802480:intron | 50.0% | |
| TTGTCCCTTTCTGCTCTGCT+GGG | + | chr5_3:16902655-16902674 | Msa0802480:CDS | 50.0% | |
| !! | ATTAAGAGCCTTCTAGGGCC+AGG | + | chr5_3:16902813-16902832 | Msa0802480:CDS | 50.0% |
| !! | TTAAGAGCCTTCTAGGGCCA+GGG | + | chr5_3:16902814-16902833 | Msa0802480:CDS | 50.0% |
| !! | AGCCATTCCACTTTTGACCC+TGG | - | chr5_3:16902834-16902853 | None:intergenic | 50.0% |
| GATTATTTGCAGCCGGCCTT+CGG | + | chr5_3:16903104-16903123 | Msa0802480:intron | 50.0% | |
| TAGTTCGATCTTCCGAAGGC+CGG | - | chr5_3:16903119-16903138 | None:intergenic | 50.0% | |
| AGGGCACAGTACATGTTTCC+TGG | + | chr5_3:16903962-16903981 | Msa0802480:CDS | 50.0% | |
| GGGCACAGTACATGTTTCCT+GGG | + | chr5_3:16903963-16903982 | Msa0802480:CDS | 50.0% | |
| TGGGTGCAACCAAGAGTTCT+GGG | + | chr5_3:16903982-16904001 | Msa0802480:CDS | 50.0% | |
| TCCTTACGGGATCGATTGGA+CGG | + | chr5_3:16904021-16904040 | Msa0802480:CDS | 50.0% | |
| ! | TTGGACCGGAAAAGTACACG+CGG | + | chr5_3:16904044-16904063 | Msa0802480:CDS | 50.0% |
| ! | ATCAGGTGTTTCTGCCTCGA+TGG | - | chr5_3:16904079-16904098 | None:intergenic | 50.0% |
| TCTCGCTTGAATCGCTGCCA+TGG | + | chr5_3:16899398-16899417 | Msa0802480:exon | 55.0% | |
| ! | CTCACCCTGAACTCGGTGAA+TGG | + | chr5_3:16899454-16899473 | Msa0802480:CDS | 55.0% |
| TGGATCCGAGGAAGTTGGGT+AGG | + | chr5_3:16899801-16899820 | Msa0802480:intron | 55.0% | |
| GGATCCGAGGAAGTTGGGTA+GGG | + | chr5_3:16899802-16899821 | Msa0802480:intron | 55.0% | |
| TTGGGGAGGGATGTGAATGG+TGG | + | chr5_3:16899952-16899971 | Msa0802480:intron | 55.0% | |
| TGGGGAGGGATGTGAATGGT+GGG | + | chr5_3:16899953-16899972 | Msa0802480:intron | 55.0% | |
| ACTAAGCGAGGTCGGCTACA+TGG | - | chr5_3:16900541-16900560 | None:intergenic | 55.0% | |
| TGTAGCCGACCTCGCTTAGT+TGG | + | chr5_3:16900541-16900560 | Msa0802480:intron | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr5_3:16902022-16902041 | Msa0802480:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr5_3:16902023-16902042 | Msa0802480:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr5_3:16902119-16902138 | None:intergenic | 55.0% | |
| TTGAGCTGTTCGTGCGTCCT+AGG | + | chr5_3:16902311-16902330 | Msa0802480:intron | 55.0% | |
| CTTGTCCCTTTCTGCTCTGC+TGG | + | chr5_3:16902654-16902673 | Msa0802480:CDS | 55.0% | |
| TGTCCCTTTCTGCTCTGCTG+GGG | + | chr5_3:16902656-16902675 | Msa0802480:CDS | 55.0% | |
| ATCCCCCAGCAGAGCAGAAA+GGG | - | chr5_3:16902662-16902681 | None:intergenic | 55.0% | |
| TATCCCCCAGCAGAGCAGAA+AGG | - | chr5_3:16902663-16902682 | None:intergenic | 55.0% | |
| ! | CTTTTGACCCTGGCCCTAGA+AGG | - | chr5_3:16902824-16902843 | None:intergenic | 55.0% |
| ! | TCTAGGGCCAGGGTCAAAAG+TGG | + | chr5_3:16902824-16902843 | Msa0802480:CDS | 55.0% |
| GGCCAGGGTCAAAAGTGGAA+TGG | + | chr5_3:16902829-16902848 | Msa0802480:CDS | 55.0% | |
| CAGAACTCTTGGTTGCACCC+AGG | - | chr5_3:16903983-16904002 | None:intergenic | 55.0% | |
| CTGGGTGCAACCAAGAGTTC+TGG | + | chr5_3:16903981-16904000 | Msa0802480:CDS | 55.0% | |
| ACCGTCCAATCGATCCCGTA+AGG | - | chr5_3:16904025-16904044 | None:intergenic | 55.0% | |
| TACGGGATCGATTGGACGGT+TGG | + | chr5_3:16904025-16904044 | Msa0802480:CDS | 55.0% | |
| GATCGATTGGACGGTTGGAC+CGG | + | chr5_3:16904030-16904049 | Msa0802480:CDS | 55.0% | |
| ! | CAACGCCGCGTGTACTTTTC+CGG | - | chr5_3:16904052-16904071 | None:intergenic | 55.0% |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr5_3:16902018-16902037 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr5_3:16902034-16902053 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr5_3:16902035-16902054 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr5_3:16902034-16902053 | Msa0802480:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr5_3:16902035-16902054 | Msa0802480:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr5_3:16902050-16902069 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr5_3:16902165-16902184 | None:intergenic | 60.0% | |
| GTCCCTTTCTGCTCTGCTGG+GGG | + | chr5_3:16902657-16902676 | Msa0802480:CDS | 60.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr5_3:16902017-16902036 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr5_3:16902028-16902047 | Msa0802480:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr5_3:16902029-16902048 | Msa0802480:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr5_3:16902033-16902052 | Msa0802480:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr5_3:16902048-16902067 | Msa0802480:intron | 65.0% | |
| CGCGGCGTTGTTGTCCATCG+AGG | + | chr5_3:16904062-16904081 | Msa0802480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16899299 | 16904587 | 16899299 | ID=Msa0802480;Name=Msa0802480 |
| chr5_3 | mRNA | 16899299 | 16904587 | 16899299 | ID=Msa0802480-mRNA-1;Parent=Msa0802480;Name=Msa0802480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=118|0.8|0.83|1|1|1|6|474|390 |
| chr5_3 | exon | 16899299 | 16899566 | 16899299 | ID=Msa0802480-mRNA-1:exon:7050;Parent=Msa0802480-mRNA-1 |
| chr5_3 | exon | 16901039 | 16901491 | 16901039 | ID=Msa0802480-mRNA-1:exon:7051;Parent=Msa0802480-mRNA-1 |
| chr5_3 | exon | 16902640 | 16902720 | 16902640 | ID=Msa0802480-mRNA-1:exon:7052;Parent=Msa0802480-mRNA-1 |
| chr5_3 | exon | 16902813 | 16903015 | 16902813 | ID=Msa0802480-mRNA-1:exon:7053;Parent=Msa0802480-mRNA-1 |
| chr5_3 | exon | 16903116 | 16903215 | 16903116 | ID=Msa0802480-mRNA-1:exon:7054;Parent=Msa0802480-mRNA-1 |
| chr5_3 | exon | 16903928 | 16904587 | 16903928 | ID=Msa0802480-mRNA-1:exon:7055;Parent=Msa0802480-mRNA-1 |
| chr5_3 | five_prime_UTR | 16899299 | 16899416 | 16899299 | ID=Msa0802480-mRNA-1:five_prime_utr;Parent=Msa0802480-mRNA-1 |
| chr5_3 | CDS | 16899417 | 16899566 | 16899417 | ID=Msa0802480-mRNA-1:cds;Parent=Msa0802480-mRNA-1 |
| chr5_3 | CDS | 16901039 | 16901491 | 16901039 | ID=Msa0802480-mRNA-1:cds;Parent=Msa0802480-mRNA-1 |
| chr5_3 | CDS | 16902640 | 16902720 | 16902640 | ID=Msa0802480-mRNA-1:cds;Parent=Msa0802480-mRNA-1 |
| chr5_3 | CDS | 16902813 | 16903015 | 16902813 | ID=Msa0802480-mRNA-1:cds;Parent=Msa0802480-mRNA-1 |
| chr5_3 | CDS | 16903116 | 16903215 | 16903116 | ID=Msa0802480-mRNA-1:cds;Parent=Msa0802480-mRNA-1 |
| chr5_3 | CDS | 16903928 | 16904113 | 16903928 | ID=Msa0802480-mRNA-1:cds;Parent=Msa0802480-mRNA-1 |
| chr5_3 | three_prime_UTR | 16904114 | 16904587 | 16904114 | ID=Msa0802480-mRNA-1:three_prime_utr;Parent=Msa0802480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
