Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576840 | XP_003630443.2 | 94.595 | 185 | 10 | 0 | 1 | 185 | 429 | 613 | 8.72e-122 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576840 | G7LGJ1 | 94.595 | 185 | 10 | 0 | 1 | 185 | 429 | 613 | 4.16e-122 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0576840 | Msa0619760 | 0.987150 | 3.117166e-169 | -8.615850e-47 |
| Msa0576840 | Msa0706250 | 0.964103 | 6.599252e-123 | -8.615850e-47 |
| Msa0576840 | Msa0964580 | -0.810595 | 1.065884e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576840 | MtrunA17_Chr8g0385461 | 94.595 | 185 | 10 | 0 | 1 | 185 | 429 | 613 | 8.02e-126 | 368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576840 | AT5G07360.2 | 75.000 | 176 | 44 | 0 | 1 | 176 | 464 | 639 | 7.27e-98 | 297 |
| Msa0576840 | AT5G07360.1 | 75.000 | 176 | 44 | 0 | 1 | 176 | 471 | 646 | 9.37e-98 | 297 |
| Msa0576840 | AT5G07360.3 | 75.000 | 176 | 44 | 0 | 1 | 176 | 471 | 646 | 9.37e-98 | 297 |
Find 73 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCCGCCTATTAATGATTT+TGG | 0.178759 | 4_1:-80943872 | Msa0576840:CDS |
| AGTTAGGAGCATTAGTAATT+TGG | 0.246850 | 4_1:-80943704 | Msa0576840:three_prime_UTR |
| GTTCAGTGGGCCACTGATCT+TGG | 0.295838 | 4_1:+80945027 | None:intergenic |
| TTCGGACCAAAATCATTAAT+AGG | 0.351030 | 4_1:+80943866 | None:intergenic |
| CTTACAATGTGATCATGGTT+AGG | 0.369584 | 4_1:+80944065 | None:intergenic |
| TTCAGTGGGCCACTGATCTT+GGG | 0.371795 | 4_1:+80945028 | None:intergenic |
| TTTACCGTGGATGCATTCAT+TGG | 0.377866 | 4_1:-80944236 | Msa0576840:CDS |
| TACACAGTTGATTCTGTTCA+AGG | 0.391326 | 4_1:-80945134 | Msa0576840:CDS |
| TTTGATCAGTGGCAGCGATC+AGG | 0.394043 | 4_1:-80945071 | Msa0576840:CDS |
| ATATGTACATATCAATCTAA+TGG | 0.417478 | 4_1:+80943596 | None:intergenic |
| CAACCACGGACCGCCATGAT+AGG | 0.439850 | 4_1:-80943646 | Msa0576840:three_prime_UTR |
| GCAGGCTCTGGCGTTGGCAA+TGG | 0.441140 | 4_1:-80943927 | Msa0576840:intron |
| AGCATAAATGCCGGTGGTGA+TGG | 0.450186 | 4_1:+80944091 | None:intergenic |
| TTACAATGTGATCATGGTTA+GGG | 0.450343 | 4_1:+80944066 | None:intergenic |
| CACAATGGATGTTGATATGC+TGG | 0.465451 | 4_1:-80945099 | Msa0576840:CDS |
| TTGATCAGTGGCAGCGATCA+GGG | 0.470688 | 4_1:-80945070 | Msa0576840:CDS |
| CCAGTCATAGTAGTGCCAAC+AGG | 0.477969 | 4_1:-80944164 | Msa0576840:CDS |
| TCCAGCAGTGGACTATATAC+AGG | 0.480191 | 4_1:-80944985 | Msa0576840:intron |
| CTCTACTTACAATTACAGTT+AGG | 0.483473 | 4_1:-80943720 | Msa0576840:three_prime_UTR |
| TCATCCGGTATCTTATCATT+CGG | 0.492160 | 4_1:+80943848 | None:intergenic |
| TTATCTGCAGGCTCTGGCGT+TGG | 0.498954 | 4_1:-80943933 | Msa0576840:intron |
| ACCTGTATATAGTCCACTGC+TGG | 0.504813 | 4_1:+80944984 | None:intergenic |
| TCATTGGAAATGCAACTGAC+TGG | 0.506344 | 4_1:-80944220 | Msa0576840:CDS |
| CTTCTTCTGCTGCCACCAGA+TGG | 0.509439 | 4_1:+80944119 | None:intergenic |
| GTATGCATAGGCAACCTTGT+TGG | 0.515233 | 4_1:-80944191 | Msa0576840:CDS |
| ACAAACTTACAATGTGATCA+TGG | 0.515711 | 4_1:+80944060 | None:intergenic |
| ACTGTGTAATTCAGTTTGAA+AGG | 0.517352 | 4_1:+80945149 | None:intergenic |
| CCTGTTGGCACTACTATGAC+TGG | 0.521941 | 4_1:+80944164 | None:intergenic |
| CATACAGGCACAACGAGCAC+GGG | 0.522092 | 4_1:-80944288 | Msa0576840:intron |
| TCATCACGGTCCACCTATCA+TGG | 0.525268 | 4_1:+80943633 | None:intergenic |
| CTATAGATGCTTACCACCCA+GGG | 0.535077 | 4_1:-80943820 | Msa0576840:CDS |
| CTGCTGGAACTAAGCGGGCA+CGG | 0.538133 | 4_1:+80945000 | None:intergenic |
| AATATCTCTGATCTACCATC+TGG | 0.539127 | 4_1:-80944134 | Msa0576840:CDS |
| CCTTGAGCAACTGGGTGAAA+CGG | 0.543738 | 4_1:-80943789 | Msa0576840:CDS |
| GCGGGCACGGTGTAGTTCAG+TGG | 0.548100 | 4_1:+80945013 | None:intergenic |
| TAATAGGCGGCCGCTGTATG+TGG | 0.551335 | 4_1:+80943882 | None:intergenic |
| TCTATAGATGCTTACCACCC+AGG | 0.553920 | 4_1:-80943821 | Msa0576840:CDS |
| CATTGGAAATGCAACTGACT+GGG | 0.557301 | 4_1:-80944219 | Msa0576840:CDS |
| GCATCTATAGATGCATCATC+CGG | 0.560420 | 4_1:+80943833 | None:intergenic |
| AATCTAATGGCTATAAGTTG+TGG | 0.560486 | 4_1:+80943609 | None:intergenic |
| TGGTCCGAATGATAAGATAC+CGG | 0.560910 | 4_1:-80943852 | Msa0576840:CDS |
| CGGGCACGGTGTAGTTCAGT+GGG | 0.565602 | 4_1:+80945014 | None:intergenic |
| CCGTTTCACCCAGTTGCTCA+AGG | 0.565634 | 4_1:+80943789 | None:intergenic |
| TACAATGTGATCATGGTTAG+GGG | 0.570554 | 4_1:+80944067 | None:intergenic |
| GAGATATTAGTAAATCCTGT+TGG | 0.573168 | 4_1:+80944149 | None:intergenic |
| GCATACAGGCACAACGAGCA+CGG | 0.575352 | 4_1:-80944289 | Msa0576840:intron |
| GTCCACTGCTGGAACTAAGC+GGG | 0.581518 | 4_1:+80944995 | None:intergenic |
| AGGCACAACGAGCACGGGGA+AGG | 0.582434 | 4_1:-80944283 | Msa0576840:CDS |
| CCACGGACCGCCATGATAGG+TGG | 0.584704 | 4_1:-80943643 | Msa0576840:three_prime_UTR |
| TGCCCGCTTAGTTCCAGCAG+TGG | 0.587159 | 4_1:-80944997 | Msa0576840:CDS |
| CCACCTATCATGGCGGTCCG+TGG | 0.588115 | 4_1:+80943643 | None:intergenic |
| AGAAGAACCACCATCACCAC+CGG | 0.596076 | 4_1:-80944101 | Msa0576840:CDS |
| TCTTGATGATGCCGAGATGG+AGG | 0.598342 | 4_1:-80945353 | Msa0576840:intron |
| ATCTCTGATCTACCATCTGG+TGG | 0.603930 | 4_1:-80944131 | Msa0576840:CDS |
| AGGTATATTAAATTTCACAA+TGG | 0.611101 | 4_1:-80945114 | Msa0576840:CDS |
| TGCTGGCTCACTTTGATCAG+TGG | 0.611485 | 4_1:-80945082 | Msa0576840:CDS |
| CAGCCGACAAACCTCCATCT+CGG | 0.617061 | 4_1:+80945342 | None:intergenic |
| ATTTCCAATGAATGCATCCA+CGG | 0.620639 | 4_1:+80944232 | None:intergenic |
| TGATCAGTGGCAGCGATCAG+GGG | 0.622019 | 4_1:-80945069 | Msa0576840:CDS |
| CTATGACTGGTAAACCAACA+AGG | 0.623059 | 4_1:+80944177 | None:intergenic |
| ATATCTTGATGATGCCGAGA+TGG | 0.625613 | 4_1:-80945356 | Msa0576840:exon |
| ATAAATGCCGGTGGTGATGG+TGG | 0.632691 | 4_1:+80944094 | None:intergenic |
| CTAACTGTAATTGTAAGTAG+AGG | 0.643764 | 4_1:+80943721 | None:intergenic |
| TGTATGAAGCCCAAGATCAG+TGG | 0.644206 | 4_1:-80945037 | Msa0576840:CDS |
| CTATAAGTTGTGGTTCATCA+CGG | 0.660037 | 4_1:+80943619 | None:intergenic |
| TCAGTGGCAGCGATCAGGGG+AGG | 0.663073 | 4_1:-80945066 | Msa0576840:CDS |
| ACAATGTGATCATGGTTAGG+GGG | 0.666722 | 4_1:+80944068 | None:intergenic |
| GACTGGGAGAAAGTATGCAT+AGG | 0.666730 | 4_1:-80944203 | Msa0576840:CDS |
| AGTCCACTGCTGGAACTAAG+CGG | 0.695324 | 4_1:+80944994 | None:intergenic |
| ATACAGGCACAACGAGCACG+GGG | 0.699547 | 4_1:-80944287 | Msa0576840:intron |
| TTACTAATCACCACATACAG+CGG | 0.709492 | 4_1:-80943892 | Msa0576840:CDS |
| GGACCAAAATCATTAATAGG+CGG | 0.713080 | 4_1:+80943869 | None:intergenic |
| TCACGGTCCACCTATCATGG+CGG | 0.726108 | 4_1:+80943636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTTAATTTAACTATTTAA+TGG | + | chr4_1:80944014-80944033 | None:intergenic | 15.0% |
| !!! | CAATTGTATATTAATTTTGA+TGG | - | chr4_1:80944503-80944522 | Msa0576840:intron | 15.0% |
| !! | CTAAAGATAAAATAAACTAA+TGG | + | chr4_1:80944618-80944637 | None:intergenic | 15.0% |
| !!! | GGTTTAATTTAACTATTTAA+TGG | + | chr4_1:80944014-80944033 | None:intergenic | 15.0% |
| !!! | CAATTGTATATTAATTTTGA+TGG | - | chr4_1:80944503-80944522 | Msa0576840:intron | 15.0% |
| !! | CTAAAGATAAAATAAACTAA+TGG | + | chr4_1:80944618-80944637 | None:intergenic | 15.0% |
| !! | CATGTCTTTACAATAAAAAT+TGG | + | chr4_1:80943644-80943663 | None:intergenic | 20.0% |
| !! | AAAAAATGGAAATGACTATA+TGG | + | chr4_1:80943698-80943717 | None:intergenic | 20.0% |
| !! | AGGTATATTAAATTTCACAA+TGG | - | chr4_1:80943845-80943864 | Msa0576840:CDS | 20.0% |
| !! | TTACTATAAAAAAGATGAGA+TGG | + | chr4_1:80944035-80944054 | None:intergenic | 20.0% |
| !!! | TTTTATAGTAAGACAATTTG+CGG | - | chr4_1:80944044-80944063 | Msa0576840:intron | 20.0% |
| !!! | AATAAAACACATGTTGATTT+AGG | - | chr4_1:80944380-80944399 | Msa0576840:intron | 20.0% |
| !!! | TATGCTTCTAAATTTTTACT+AGG | - | chr4_1:80944939-80944958 | Msa0576840:intron | 20.0% |
| !! | ATATGTACATATCAATCTAA+TGG | + | chr4_1:80945366-80945385 | None:intergenic | 20.0% |
| !! | CATGTCTTTACAATAAAAAT+TGG | + | chr4_1:80943644-80943663 | None:intergenic | 20.0% |
| !! | AAAAAATGGAAATGACTATA+TGG | + | chr4_1:80943698-80943717 | None:intergenic | 20.0% |
| !! | AGGTATATTAAATTTCACAA+TGG | - | chr4_1:80943845-80943864 | Msa0576840:CDS | 20.0% |
| !! | TTACTATAAAAAAGATGAGA+TGG | + | chr4_1:80944035-80944054 | None:intergenic | 20.0% |
| !!! | TTTTATAGTAAGACAATTTG+CGG | - | chr4_1:80944044-80944063 | Msa0576840:intron | 20.0% |
| !!! | AATAAAACACATGTTGATTT+AGG | - | chr4_1:80944380-80944399 | Msa0576840:intron | 20.0% |
| !!! | TATGCTTCTAAATTTTTACT+AGG | - | chr4_1:80944939-80944958 | Msa0576840:intron | 20.0% |
| !! | ATATGTACATATCAATCTAA+TGG | + | chr4_1:80945366-80945385 | None:intergenic | 20.0% |
| !!! | TCCATTTTTTGAATGTTGTT+AGG | - | chr4_1:80943708-80943727 | Msa0576840:three_prime_UTR | 25.0% |
| ! | TCCTAACAACATTCAAAAAA+TGG | + | chr4_1:80943712-80943731 | None:intergenic | 25.0% |
| !! | ATAGAACTAGATGAGATTTT+AGG | - | chr4_1:80944077-80944096 | Msa0576840:CDS | 25.0% |
| ! | ACTGCTACATAAATTACTTT+GGG | + | chr4_1:80944127-80944146 | None:intergenic | 25.0% |
| !!! | CATGTGTTTTATTCTTTTTG+CGG | + | chr4_1:80944373-80944392 | None:intergenic | 25.0% |
| ! | AGATTTGAATTATTGCATAC+AGG | - | chr4_1:80944656-80944675 | Msa0576840:intron | 25.0% |
| !!! | TCCATTTTTTGAATGTTGTT+AGG | - | chr4_1:80943708-80943727 | Msa0576840:three_prime_UTR | 25.0% |
| ! | TCCTAACAACATTCAAAAAA+TGG | + | chr4_1:80943712-80943731 | None:intergenic | 25.0% |
| !! | ATAGAACTAGATGAGATTTT+AGG | - | chr4_1:80944077-80944096 | Msa0576840:CDS | 25.0% |
| ! | ACTGCTACATAAATTACTTT+GGG | + | chr4_1:80944127-80944146 | None:intergenic | 25.0% |
| !!! | CATGTGTTTTATTCTTTTTG+CGG | + | chr4_1:80944373-80944392 | None:intergenic | 25.0% |
| ! | AGATTTGAATTATTGCATAC+AGG | - | chr4_1:80944656-80944675 | Msa0576840:intron | 25.0% |
| GGAAATGACTATATGGAATT+TGG | + | chr4_1:80943691-80943710 | None:intergenic | 30.0% | |
| ACTGTGTAATTCAGTTTGAA+AGG | + | chr4_1:80943813-80943832 | None:intergenic | 30.0% | |
| CACTGCTACATAAATTACTT+TGG | + | chr4_1:80944128-80944147 | None:intergenic | 30.0% | |
| ! | TTTTTCTATCTGTGCTTCAT+AGG | - | chr4_1:80944261-80944280 | Msa0576840:CDS | 30.0% |
| GAGATATTAGTAAATCCTGT+TGG | + | chr4_1:80944813-80944832 | None:intergenic | 30.0% | |
| TTACAATGTGATCATGGTTA+GGG | + | chr4_1:80944896-80944915 | None:intergenic | 30.0% | |
| ACAAACTTACAATGTGATCA+TGG | + | chr4_1:80944902-80944921 | None:intergenic | 30.0% | |
| TTCGGACCAAAATCATTAAT+AGG | + | chr4_1:80945096-80945115 | None:intergenic | 30.0% | |
| CTAACTGTAATTGTAAGTAG+AGG | + | chr4_1:80945241-80945260 | None:intergenic | 30.0% | |
| CTCTACTTACAATTACAGTT+AGG | - | chr4_1:80945239-80945258 | Msa0576840:intron | 30.0% | |
| !! | AGTTAGGAGCATTAGTAATT+TGG | - | chr4_1:80945255-80945274 | Msa0576840:intron | 30.0% |
| !!! | TGCTCATTTTAGAGCTAAAA+AGG | - | chr4_1:80945284-80945303 | Msa0576840:intron | 30.0% |
| !!! | GCTCATTTTAGAGCTAAAAA+GGG | - | chr4_1:80945285-80945304 | Msa0576840:intron | 30.0% |
| AATCTAATGGCTATAAGTTG+TGG | + | chr4_1:80945353-80945372 | None:intergenic | 30.0% | |
| GGAAATGACTATATGGAATT+TGG | + | chr4_1:80943691-80943710 | None:intergenic | 30.0% | |
| ACTGTGTAATTCAGTTTGAA+AGG | + | chr4_1:80943813-80943832 | None:intergenic | 30.0% | |
| CACTGCTACATAAATTACTT+TGG | + | chr4_1:80944128-80944147 | None:intergenic | 30.0% | |
| ! | TTTTTCTATCTGTGCTTCAT+AGG | - | chr4_1:80944261-80944280 | Msa0576840:CDS | 30.0% |
| GAGATATTAGTAAATCCTGT+TGG | + | chr4_1:80944813-80944832 | None:intergenic | 30.0% | |
| TTACAATGTGATCATGGTTA+GGG | + | chr4_1:80944896-80944915 | None:intergenic | 30.0% | |
| ACAAACTTACAATGTGATCA+TGG | + | chr4_1:80944902-80944921 | None:intergenic | 30.0% | |
| TTCGGACCAAAATCATTAAT+AGG | + | chr4_1:80945096-80945115 | None:intergenic | 30.0% | |
| CTAACTGTAATTGTAAGTAG+AGG | + | chr4_1:80945241-80945260 | None:intergenic | 30.0% | |
| CTCTACTTACAATTACAGTT+AGG | - | chr4_1:80945239-80945258 | Msa0576840:intron | 30.0% | |
| !! | AGTTAGGAGCATTAGTAATT+TGG | - | chr4_1:80945255-80945274 | Msa0576840:intron | 30.0% |
| !!! | TGCTCATTTTAGAGCTAAAA+AGG | - | chr4_1:80945284-80945303 | Msa0576840:intron | 30.0% |
| !!! | GCTCATTTTAGAGCTAAAAA+GGG | - | chr4_1:80945285-80945304 | Msa0576840:intron | 30.0% |
| AATCTAATGGCTATAAGTTG+TGG | + | chr4_1:80945353-80945372 | None:intergenic | 30.0% | |
| TGTTGATGTTCTTGTGTCAA+TGG | - | chr4_1:80943773-80943792 | Msa0576840:CDS | 35.0% | |
| GTTGATGTTCTTGTGTCAAT+GGG | - | chr4_1:80943774-80943793 | Msa0576840:CDS | 35.0% | |
| ! | TACACAGTTGATTCTGTTCA+AGG | - | chr4_1:80943825-80943844 | Msa0576840:CDS | 35.0% |
| ! | AATAAGAGAGTCTTTTACCG+TGG | - | chr4_1:80944710-80944729 | Msa0576840:intron | 35.0% |
| ATTTCCAATGAATGCATCCA+CGG | + | chr4_1:80944730-80944749 | None:intergenic | 35.0% | |
| AATATCTCTGATCTACCATC+TGG | - | chr4_1:80944825-80944844 | Msa0576840:intron | 35.0% | |
| TACAATGTGATCATGGTTAG+GGG | + | chr4_1:80944895-80944914 | None:intergenic | 35.0% | |
| CTTACAATGTGATCATGGTT+AGG | + | chr4_1:80944897-80944916 | None:intergenic | 35.0% | |
| TTACTAATCACCACATACAG+CGG | - | chr4_1:80945067-80945086 | Msa0576840:CDS | 35.0% | |
| GGACCAAAATCATTAATAGG+CGG | + | chr4_1:80945093-80945112 | None:intergenic | 35.0% | |
| TCATCCGGTATCTTATCATT+CGG | + | chr4_1:80945114-80945133 | None:intergenic | 35.0% | |
| TAAAAAGGGTAGATCAACCA+CGG | - | chr4_1:80945299-80945318 | Msa0576840:intron | 35.0% | |
| CTATAAGTTGTGGTTCATCA+CGG | + | chr4_1:80945343-80945362 | None:intergenic | 35.0% | |
| TGTTGATGTTCTTGTGTCAA+TGG | - | chr4_1:80943773-80943792 | Msa0576840:CDS | 35.0% | |
| GTTGATGTTCTTGTGTCAAT+GGG | - | chr4_1:80943774-80943793 | Msa0576840:CDS | 35.0% | |
| ! | TACACAGTTGATTCTGTTCA+AGG | - | chr4_1:80943825-80943844 | Msa0576840:CDS | 35.0% |
| ! | AATAAGAGAGTCTTTTACCG+TGG | - | chr4_1:80944710-80944729 | Msa0576840:intron | 35.0% |
| ATTTCCAATGAATGCATCCA+CGG | + | chr4_1:80944730-80944749 | None:intergenic | 35.0% | |
| AATATCTCTGATCTACCATC+TGG | - | chr4_1:80944825-80944844 | Msa0576840:intron | 35.0% | |
| TACAATGTGATCATGGTTAG+GGG | + | chr4_1:80944895-80944914 | None:intergenic | 35.0% | |
| CTTACAATGTGATCATGGTT+AGG | + | chr4_1:80944897-80944916 | None:intergenic | 35.0% | |
| TTACTAATCACCACATACAG+CGG | - | chr4_1:80945067-80945086 | Msa0576840:CDS | 35.0% | |
| GGACCAAAATCATTAATAGG+CGG | + | chr4_1:80945093-80945112 | None:intergenic | 35.0% | |
| TCATCCGGTATCTTATCATT+CGG | + | chr4_1:80945114-80945133 | None:intergenic | 35.0% | |
| TAAAAAGGGTAGATCAACCA+CGG | - | chr4_1:80945299-80945318 | Msa0576840:intron | 35.0% | |
| CTATAAGTTGTGGTTCATCA+CGG | + | chr4_1:80945343-80945362 | None:intergenic | 35.0% | |
| !! | ATATCTTGATGATGCCGAGA+TGG | - | chr4_1:80943603-80943622 | Msa0576840:three_prime_UTR | 40.0% |
| TTTATTTGCCATGACAACCC+AGG | - | chr4_1:80943749-80943768 | Msa0576840:three_prime_UTR | 40.0% | |
| CACAAGAACATCAACAACCT+GGG | + | chr4_1:80943769-80943788 | None:intergenic | 40.0% | |
| ACACAAGAACATCAACAACC+TGG | + | chr4_1:80943770-80943789 | None:intergenic | 40.0% | |
| CACAATGGATGTTGATATGC+TGG | - | chr4_1:80943860-80943879 | Msa0576840:CDS | 40.0% | |
| ACACAGGACACATTAATCTG+AGG | + | chr4_1:80944154-80944173 | None:intergenic | 40.0% | |
| CAGATTAATGTGTCCTGTGT+CGG | - | chr4_1:80944154-80944173 | Msa0576840:CDS | 40.0% | |
| AATGGTTGGGAACATACATG+CGG | - | chr4_1:80944329-80944348 | Msa0576840:intron | 40.0% | |
| !! | TTGTACCAAAAGTACCAGAG+GGG | + | chr4_1:80944408-80944427 | None:intergenic | 40.0% |
| !! | CTTGTACCAAAAGTACCAGA+GGG | + | chr4_1:80944409-80944428 | None:intergenic | 40.0% |
| !! | CTGAAAACTCTGAGGTTCTA+TGG | + | chr4_1:80944433-80944452 | None:intergenic | 40.0% |
| ! | CATAGAACCTCAGAGTTTTC+AGG | - | chr4_1:80944431-80944450 | Msa0576840:intron | 40.0% |
| TCAGAAACCTGAAAACTCTG+AGG | + | chr4_1:80944441-80944460 | None:intergenic | 40.0% | |
| TTGACACTTGCAGAAAGATC+AGG | - | chr4_1:80944558-80944577 | Msa0576840:intron | 40.0% | |
| TTTACCGTGGATGCATTCAT+TGG | - | chr4_1:80944723-80944742 | Msa0576840:intron | 40.0% | |
| TCATTGGAAATGCAACTGAC+TGG | - | chr4_1:80944739-80944758 | Msa0576840:intron | 40.0% | |
| CATTGGAAATGCAACTGACT+GGG | - | chr4_1:80944740-80944759 | Msa0576840:intron | 40.0% | |
| CTATGACTGGTAAACCAACA+AGG | + | chr4_1:80944785-80944804 | None:intergenic | 40.0% | |
| ACAATGTGATCATGGTTAGG+GGG | + | chr4_1:80944894-80944913 | None:intergenic | 40.0% | |
| TATTTCCCCTGTTTATCTGC+AGG | - | chr4_1:80945014-80945033 | Msa0576840:CDS | 40.0% | |
| TGGTCCGAATGATAAGATAC+CGG | - | chr4_1:80945107-80945126 | Msa0576840:CDS | 40.0% | |
| GCATCTATAGATGCATCATC+CGG | + | chr4_1:80945129-80945148 | None:intergenic | 40.0% | |
| !! | TTTTTGGTCCTTGAGCAACT+GGG | - | chr4_1:80945162-80945181 | Msa0576840:intron | 40.0% |
| !! | ATATCTTGATGATGCCGAGA+TGG | - | chr4_1:80943603-80943622 | Msa0576840:three_prime_UTR | 40.0% |
| TTTATTTGCCATGACAACCC+AGG | - | chr4_1:80943749-80943768 | Msa0576840:three_prime_UTR | 40.0% | |
| CACAAGAACATCAACAACCT+GGG | + | chr4_1:80943769-80943788 | None:intergenic | 40.0% | |
| ACACAAGAACATCAACAACC+TGG | + | chr4_1:80943770-80943789 | None:intergenic | 40.0% | |
| CACAATGGATGTTGATATGC+TGG | - | chr4_1:80943860-80943879 | Msa0576840:CDS | 40.0% | |
| ACACAGGACACATTAATCTG+AGG | + | chr4_1:80944154-80944173 | None:intergenic | 40.0% | |
| CAGATTAATGTGTCCTGTGT+CGG | - | chr4_1:80944154-80944173 | Msa0576840:CDS | 40.0% | |
| AATGGTTGGGAACATACATG+CGG | - | chr4_1:80944329-80944348 | Msa0576840:intron | 40.0% | |
| !! | TTGTACCAAAAGTACCAGAG+GGG | + | chr4_1:80944408-80944427 | None:intergenic | 40.0% |
| !! | CTTGTACCAAAAGTACCAGA+GGG | + | chr4_1:80944409-80944428 | None:intergenic | 40.0% |
| !! | CTGAAAACTCTGAGGTTCTA+TGG | + | chr4_1:80944433-80944452 | None:intergenic | 40.0% |
| ! | CATAGAACCTCAGAGTTTTC+AGG | - | chr4_1:80944431-80944450 | Msa0576840:intron | 40.0% |
| TCAGAAACCTGAAAACTCTG+AGG | + | chr4_1:80944441-80944460 | None:intergenic | 40.0% | |
| TTGACACTTGCAGAAAGATC+AGG | - | chr4_1:80944558-80944577 | Msa0576840:intron | 40.0% | |
| TTTACCGTGGATGCATTCAT+TGG | - | chr4_1:80944723-80944742 | Msa0576840:intron | 40.0% | |
| TCATTGGAAATGCAACTGAC+TGG | - | chr4_1:80944739-80944758 | Msa0576840:intron | 40.0% | |
| CATTGGAAATGCAACTGACT+GGG | - | chr4_1:80944740-80944759 | Msa0576840:intron | 40.0% | |
| CTATGACTGGTAAACCAACA+AGG | + | chr4_1:80944785-80944804 | None:intergenic | 40.0% | |
| ACAATGTGATCATGGTTAGG+GGG | + | chr4_1:80944894-80944913 | None:intergenic | 40.0% | |
| TATTTCCCCTGTTTATCTGC+AGG | - | chr4_1:80945014-80945033 | Msa0576840:CDS | 40.0% | |
| TGGTCCGAATGATAAGATAC+CGG | - | chr4_1:80945107-80945126 | Msa0576840:CDS | 40.0% | |
| GCATCTATAGATGCATCATC+CGG | + | chr4_1:80945129-80945148 | None:intergenic | 40.0% | |
| !! | TTTTTGGTCCTTGAGCAACT+GGG | - | chr4_1:80945162-80945181 | Msa0576840:intron | 40.0% |
| ATCAACAACCTGGGTTGTCA+TGG | + | chr4_1:80943760-80943779 | None:intergenic | 45.0% | |
| TGTGTCAATGGGTGTCAAGA+TGG | - | chr4_1:80943785-80943804 | Msa0576840:CDS | 45.0% | |
| TGTATGAAGCCCAAGATCAG+TGG | - | chr4_1:80943922-80943941 | Msa0576840:CDS | 45.0% | |
| !! | TCCAGCAGTGGACTATATAC+AGG | - | chr4_1:80943974-80943993 | Msa0576840:intron | 45.0% |
| ACCTGTATATAGTCCACTGC+TGG | + | chr4_1:80943978-80943997 | None:intergenic | 45.0% | |
| TACGTGTAAATGTCCGACAC+AGG | + | chr4_1:80944170-80944189 | None:intergenic | 45.0% | |
| CATGACACTAACATCGAGAC+TGG | + | chr4_1:80944230-80944249 | None:intergenic | 45.0% | |
| GAACAGATAGGCTGCTATCT+GGG | + | chr4_1:80944298-80944317 | None:intergenic | 45.0% | |
| TACCTCGCATACGAACAGAT+AGG | + | chr4_1:80944310-80944329 | None:intergenic | 45.0% | |
| TCTGTTCGTATGCGAGGTAA+TGG | - | chr4_1:80944311-80944330 | Msa0576840:intron | 45.0% | |
| ! | TTCGTATGCGAGGTAATGGT+TGG | - | chr4_1:80944315-80944334 | Msa0576840:intron | 45.0% |
| ! | TCGTATGCGAGGTAATGGTT+GGG | - | chr4_1:80944316-80944335 | Msa0576840:intron | 45.0% |
| !! | CCTTGTACCAAAAGTACCAG+AGG | + | chr4_1:80944410-80944429 | None:intergenic | 45.0% |
| ! | CCTCTGGTACTTTTGGTACA+AGG | - | chr4_1:80944407-80944426 | Msa0576840:intron | 45.0% |
| ! | GACTGGGAGAAAGTATGCAT+AGG | - | chr4_1:80944756-80944775 | Msa0576840:intron | 45.0% |
| GTATGCATAGGCAACCTTGT+TGG | - | chr4_1:80944768-80944787 | Msa0576840:intron | 45.0% | |
| ATCTCTGATCTACCATCTGG+TGG | - | chr4_1:80944828-80944847 | Msa0576840:intron | 45.0% | |
| ! | CGGCCGCCTATTAATGATTT+TGG | - | chr4_1:80945087-80945106 | Msa0576840:CDS | 45.0% |
| TCTATAGATGCTTACCACCC+AGG | - | chr4_1:80945138-80945157 | Msa0576840:CDS | 45.0% | |
| CTATAGATGCTTACCACCCA+GGG | - | chr4_1:80945139-80945158 | Msa0576840:CDS | 45.0% | |
| !!! | GTTTTTGGTCCTTGAGCAAC+TGG | - | chr4_1:80945161-80945180 | Msa0576840:intron | 45.0% |
| ATCAACAACCTGGGTTGTCA+TGG | + | chr4_1:80943760-80943779 | None:intergenic | 45.0% | |
| TGTGTCAATGGGTGTCAAGA+TGG | - | chr4_1:80943785-80943804 | Msa0576840:CDS | 45.0% | |
| TGTATGAAGCCCAAGATCAG+TGG | - | chr4_1:80943922-80943941 | Msa0576840:CDS | 45.0% | |
| !! | TCCAGCAGTGGACTATATAC+AGG | - | chr4_1:80943974-80943993 | Msa0576840:intron | 45.0% |
| ACCTGTATATAGTCCACTGC+TGG | + | chr4_1:80943978-80943997 | None:intergenic | 45.0% | |
| TACGTGTAAATGTCCGACAC+AGG | + | chr4_1:80944170-80944189 | None:intergenic | 45.0% | |
| CATGACACTAACATCGAGAC+TGG | + | chr4_1:80944230-80944249 | None:intergenic | 45.0% | |
| GAACAGATAGGCTGCTATCT+GGG | + | chr4_1:80944298-80944317 | None:intergenic | 45.0% | |
| TACCTCGCATACGAACAGAT+AGG | + | chr4_1:80944310-80944329 | None:intergenic | 45.0% | |
| TCTGTTCGTATGCGAGGTAA+TGG | - | chr4_1:80944311-80944330 | Msa0576840:intron | 45.0% | |
| ! | TTCGTATGCGAGGTAATGGT+TGG | - | chr4_1:80944315-80944334 | Msa0576840:intron | 45.0% |
| ! | TCGTATGCGAGGTAATGGTT+GGG | - | chr4_1:80944316-80944335 | Msa0576840:intron | 45.0% |
| !! | CCTTGTACCAAAAGTACCAG+AGG | + | chr4_1:80944410-80944429 | None:intergenic | 45.0% |
| ! | CCTCTGGTACTTTTGGTACA+AGG | - | chr4_1:80944407-80944426 | Msa0576840:intron | 45.0% |
| ! | GACTGGGAGAAAGTATGCAT+AGG | - | chr4_1:80944756-80944775 | Msa0576840:intron | 45.0% |
| GTATGCATAGGCAACCTTGT+TGG | - | chr4_1:80944768-80944787 | Msa0576840:intron | 45.0% | |
| ATCTCTGATCTACCATCTGG+TGG | - | chr4_1:80944828-80944847 | Msa0576840:intron | 45.0% | |
| ! | CGGCCGCCTATTAATGATTT+TGG | - | chr4_1:80945087-80945106 | Msa0576840:CDS | 45.0% |
| TCTATAGATGCTTACCACCC+AGG | - | chr4_1:80945138-80945157 | Msa0576840:CDS | 45.0% | |
| CTATAGATGCTTACCACCCA+GGG | - | chr4_1:80945139-80945158 | Msa0576840:CDS | 45.0% | |
| !!! | GTTTTTGGTCCTTGAGCAAC+TGG | - | chr4_1:80945161-80945180 | Msa0576840:intron | 45.0% |
| !! | TCTTGATGATGCCGAGATGG+AGG | - | chr4_1:80943606-80943625 | Msa0576840:three_prime_UTR | 50.0% |
| ATGCCGAGATGGAGGTTTGT+CGG | - | chr4_1:80943614-80943633 | Msa0576840:three_prime_UTR | 50.0% | |
| !! | TGCTGGCTCACTTTGATCAG+TGG | - | chr4_1:80943877-80943896 | Msa0576840:CDS | 50.0% |
| TTTGATCAGTGGCAGCGATC+AGG | - | chr4_1:80943888-80943907 | Msa0576840:CDS | 50.0% | |
| TTGATCAGTGGCAGCGATCA+GGG | - | chr4_1:80943889-80943908 | Msa0576840:CDS | 50.0% | |
| TTCAGTGGGCCACTGATCTT+GGG | + | chr4_1:80943934-80943953 | None:intergenic | 50.0% | |
| AGTCCACTGCTGGAACTAAG+CGG | + | chr4_1:80943968-80943987 | None:intergenic | 50.0% | |
| CGAACAGATAGGCTGCTATC+TGG | + | chr4_1:80944299-80944318 | None:intergenic | 50.0% | |
| AGCCTATCTGTTCGTATGCG+AGG | - | chr4_1:80944305-80944324 | Msa0576840:intron | 50.0% | |
| !! | TGTTGATTTAGGCTCCCCTC+TGG | - | chr4_1:80944391-80944410 | Msa0576840:intron | 50.0% |
| CCTGTTGGCACTACTATGAC+TGG | + | chr4_1:80944798-80944817 | None:intergenic | 50.0% | |
| CCAGTCATAGTAGTGCCAAC+AGG | - | chr4_1:80944795-80944814 | Msa0576840:intron | 50.0% | |
| AGAAGAACCACCATCACCAC+CGG | - | chr4_1:80944858-80944877 | Msa0576840:intron | 50.0% | |
| !! | ATAAATGCCGGTGGTGATGG+TGG | + | chr4_1:80944868-80944887 | None:intergenic | 50.0% |
| AGCATAAATGCCGGTGGTGA+TGG | + | chr4_1:80944871-80944890 | None:intergenic | 50.0% | |
| ! | GTTAGGGGGAGCATAAATGC+CGG | + | chr4_1:80944880-80944899 | None:intergenic | 50.0% |
| CAGAGCCTGCAGATAAACAG+GGG | + | chr4_1:80945022-80945041 | None:intergenic | 50.0% | |
| CCAGAGCCTGCAGATAAACA+GGG | + | chr4_1:80945023-80945042 | None:intergenic | 50.0% | |
| ! | TGCTTACCACCCAGGGTTTT+TGG | - | chr4_1:80945146-80945165 | Msa0576840:CDS | 50.0% |
| GCTCAAGGACCAAAAACCCT+GGG | + | chr4_1:80945158-80945177 | None:intergenic | 50.0% | |
| TGCTCAAGGACCAAAAACCC+TGG | + | chr4_1:80945159-80945178 | None:intergenic | 50.0% | |
| CCTTGAGCAACTGGGTGAAA+CGG | - | chr4_1:80945170-80945189 | Msa0576840:intron | 50.0% | |
| TCATCACGGTCCACCTATCA+TGG | + | chr4_1:80945329-80945348 | None:intergenic | 50.0% | |
| !! | TCTTGATGATGCCGAGATGG+AGG | - | chr4_1:80943606-80943625 | Msa0576840:three_prime_UTR | 50.0% |
| ATGCCGAGATGGAGGTTTGT+CGG | - | chr4_1:80943614-80943633 | Msa0576840:three_prime_UTR | 50.0% | |
| !! | TGCTGGCTCACTTTGATCAG+TGG | - | chr4_1:80943877-80943896 | Msa0576840:CDS | 50.0% |
| TTTGATCAGTGGCAGCGATC+AGG | - | chr4_1:80943888-80943907 | Msa0576840:CDS | 50.0% | |
| TTGATCAGTGGCAGCGATCA+GGG | - | chr4_1:80943889-80943908 | Msa0576840:CDS | 50.0% | |
| TTCAGTGGGCCACTGATCTT+GGG | + | chr4_1:80943934-80943953 | None:intergenic | 50.0% | |
| AGTCCACTGCTGGAACTAAG+CGG | + | chr4_1:80943968-80943987 | None:intergenic | 50.0% | |
| CGAACAGATAGGCTGCTATC+TGG | + | chr4_1:80944299-80944318 | None:intergenic | 50.0% | |
| AGCCTATCTGTTCGTATGCG+AGG | - | chr4_1:80944305-80944324 | Msa0576840:intron | 50.0% | |
| !! | TGTTGATTTAGGCTCCCCTC+TGG | - | chr4_1:80944391-80944410 | Msa0576840:intron | 50.0% |
| CCTGTTGGCACTACTATGAC+TGG | + | chr4_1:80944798-80944817 | None:intergenic | 50.0% | |
| CCAGTCATAGTAGTGCCAAC+AGG | - | chr4_1:80944795-80944814 | Msa0576840:intron | 50.0% | |
| AGAAGAACCACCATCACCAC+CGG | - | chr4_1:80944858-80944877 | Msa0576840:intron | 50.0% | |
| !! | ATAAATGCCGGTGGTGATGG+TGG | + | chr4_1:80944868-80944887 | None:intergenic | 50.0% |
| AGCATAAATGCCGGTGGTGA+TGG | + | chr4_1:80944871-80944890 | None:intergenic | 50.0% | |
| ! | GTTAGGGGGAGCATAAATGC+CGG | + | chr4_1:80944880-80944899 | None:intergenic | 50.0% |
| CAGAGCCTGCAGATAAACAG+GGG | + | chr4_1:80945022-80945041 | None:intergenic | 50.0% | |
| CCAGAGCCTGCAGATAAACA+GGG | + | chr4_1:80945023-80945042 | None:intergenic | 50.0% | |
| ! | TGCTTACCACCCAGGGTTTT+TGG | - | chr4_1:80945146-80945165 | Msa0576840:CDS | 50.0% |
| GCTCAAGGACCAAAAACCCT+GGG | + | chr4_1:80945158-80945177 | None:intergenic | 50.0% | |
| TGCTCAAGGACCAAAAACCC+TGG | + | chr4_1:80945159-80945178 | None:intergenic | 50.0% | |
| CCTTGAGCAACTGGGTGAAA+CGG | - | chr4_1:80945170-80945189 | Msa0576840:intron | 50.0% | |
| TCATCACGGTCCACCTATCA+TGG | + | chr4_1:80945329-80945348 | None:intergenic | 50.0% | |
| CAGCCGACAAACCTCCATCT+CGG | + | chr4_1:80943620-80943639 | None:intergenic | 55.0% | |
| TGATCAGTGGCAGCGATCAG+GGG | - | chr4_1:80943890-80943909 | Msa0576840:CDS | 55.0% | |
| GTTCAGTGGGCCACTGATCT+TGG | + | chr4_1:80943935-80943954 | None:intergenic | 55.0% | |
| GTCCACTGCTGGAACTAAGC+GGG | + | chr4_1:80943967-80943986 | None:intergenic | 55.0% | |
| ! | AGGCTCCCCTCTGGTACTTT+TGG | - | chr4_1:80944400-80944419 | Msa0576840:intron | 55.0% |
| GCATACAGGCACAACGAGCA+CGG | - | chr4_1:80944670-80944689 | Msa0576840:intron | 55.0% | |
| CATACAGGCACAACGAGCAC+GGG | - | chr4_1:80944671-80944690 | Msa0576840:intron | 55.0% | |
| ATACAGGCACAACGAGCACG+GGG | - | chr4_1:80944672-80944691 | Msa0576840:intron | 55.0% | |
| CTTCTTCTGCTGCCACCAGA+TGG | + | chr4_1:80944843-80944862 | None:intergenic | 55.0% | |
| CCCTGTTTATCTGCAGGCTC+TGG | - | chr4_1:80945020-80945039 | Msa0576840:CDS | 55.0% | |
| GCCAGAGCCTGCAGATAAAC+AGG | + | chr4_1:80945024-80945043 | None:intergenic | 55.0% | |
| ! | TTATCTGCAGGCTCTGGCGT+TGG | - | chr4_1:80945026-80945045 | Msa0576840:CDS | 55.0% |
| TAATAGGCGGCCGCTGTATG+TGG | + | chr4_1:80945080-80945099 | None:intergenic | 55.0% | |
| CAAGGACCAAAAACCCTGGG+TGG | + | chr4_1:80945155-80945174 | None:intergenic | 55.0% | |
| CCGTTTCACCCAGTTGCTCA+AGG | + | chr4_1:80945173-80945192 | None:intergenic | 55.0% | |
| TCACGGTCCACCTATCATGG+CGG | + | chr4_1:80945326-80945345 | None:intergenic | 55.0% | |
| CAGCCGACAAACCTCCATCT+CGG | + | chr4_1:80943620-80943639 | None:intergenic | 55.0% | |
| TGATCAGTGGCAGCGATCAG+GGG | - | chr4_1:80943890-80943909 | Msa0576840:CDS | 55.0% | |
| GTTCAGTGGGCCACTGATCT+TGG | + | chr4_1:80943935-80943954 | None:intergenic | 55.0% | |
| GTCCACTGCTGGAACTAAGC+GGG | + | chr4_1:80943967-80943986 | None:intergenic | 55.0% | |
| ! | AGGCTCCCCTCTGGTACTTT+TGG | - | chr4_1:80944400-80944419 | Msa0576840:intron | 55.0% |
| GCATACAGGCACAACGAGCA+CGG | - | chr4_1:80944670-80944689 | Msa0576840:intron | 55.0% | |
| CATACAGGCACAACGAGCAC+GGG | - | chr4_1:80944671-80944690 | Msa0576840:intron | 55.0% | |
| ATACAGGCACAACGAGCACG+GGG | - | chr4_1:80944672-80944691 | Msa0576840:intron | 55.0% | |
| CTTCTTCTGCTGCCACCAGA+TGG | + | chr4_1:80944843-80944862 | None:intergenic | 55.0% | |
| CCCTGTTTATCTGCAGGCTC+TGG | - | chr4_1:80945020-80945039 | Msa0576840:CDS | 55.0% | |
| GCCAGAGCCTGCAGATAAAC+AGG | + | chr4_1:80945024-80945043 | None:intergenic | 55.0% | |
| ! | TTATCTGCAGGCTCTGGCGT+TGG | - | chr4_1:80945026-80945045 | Msa0576840:CDS | 55.0% |
| TAATAGGCGGCCGCTGTATG+TGG | + | chr4_1:80945080-80945099 | None:intergenic | 55.0% | |
| CAAGGACCAAAAACCCTGGG+TGG | + | chr4_1:80945155-80945174 | None:intergenic | 55.0% | |
| CCGTTTCACCCAGTTGCTCA+AGG | + | chr4_1:80945173-80945192 | None:intergenic | 55.0% | |
| TCACGGTCCACCTATCATGG+CGG | + | chr4_1:80945326-80945345 | None:intergenic | 55.0% | |
| CGGGCACGGTGTAGTTCAGT+GGG | + | chr4_1:80943948-80943967 | None:intergenic | 60.0% | |
| CTGCTGGAACTAAGCGGGCA+CGG | + | chr4_1:80943962-80943981 | None:intergenic | 60.0% | |
| TGCCCGCTTAGTTCCAGCAG+TGG | - | chr4_1:80943962-80943981 | Msa0576840:intron | 60.0% | |
| ! | AGGGGGAGCATAAATGCCGG+TGG | + | chr4_1:80944877-80944896 | None:intergenic | 60.0% |
| CAACCACGGACCGCCATGAT+AGG | - | chr4_1:80945313-80945332 | Msa0576840:intron | 60.0% | |
| CGGGCACGGTGTAGTTCAGT+GGG | + | chr4_1:80943948-80943967 | None:intergenic | 60.0% | |
| CTGCTGGAACTAAGCGGGCA+CGG | + | chr4_1:80943962-80943981 | None:intergenic | 60.0% | |
| TGCCCGCTTAGTTCCAGCAG+TGG | - | chr4_1:80943962-80943981 | Msa0576840:intron | 60.0% | |
| ! | AGGGGGAGCATAAATGCCGG+TGG | + | chr4_1:80944877-80944896 | None:intergenic | 60.0% |
| CAACCACGGACCGCCATGAT+AGG | - | chr4_1:80945313-80945332 | Msa0576840:intron | 60.0% | |
| TCAGTGGCAGCGATCAGGGG+AGG | - | chr4_1:80943893-80943912 | Msa0576840:CDS | 65.0% | |
| GCGGGCACGGTGTAGTTCAG+TGG | + | chr4_1:80943949-80943968 | None:intergenic | 65.0% | |
| AGGCACAACGAGCACGGGGA+AGG | - | chr4_1:80944676-80944695 | Msa0576840:intron | 65.0% | |
| !! | GCAGGCTCTGGCGTTGGCAA+TGG | - | chr4_1:80945032-80945051 | Msa0576840:CDS | 65.0% |
| CCACCTATCATGGCGGTCCG+TGG | + | chr4_1:80945319-80945338 | None:intergenic | 65.0% | |
| CCACGGACCGCCATGATAGG+TGG | - | chr4_1:80945316-80945335 | Msa0576840:intron | 65.0% | |
| TCAGTGGCAGCGATCAGGGG+AGG | - | chr4_1:80943893-80943912 | Msa0576840:CDS | 65.0% | |
| GCGGGCACGGTGTAGTTCAG+TGG | + | chr4_1:80943949-80943968 | None:intergenic | 65.0% | |
| AGGCACAACGAGCACGGGGA+AGG | - | chr4_1:80944676-80944695 | Msa0576840:intron | 65.0% | |
| !! | GCAGGCTCTGGCGTTGGCAA+TGG | - | chr4_1:80945032-80945051 | Msa0576840:CDS | 65.0% |
| CCACCTATCATGGCGGTCCG+TGG | + | chr4_1:80945319-80945338 | None:intergenic | 65.0% | |
| CCACGGACCGCCATGATAGG+TGG | - | chr4_1:80945316-80945335 | Msa0576840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 80943585 | 80945396 | 80943585 | ID=Msa0576840;Name=Msa0576840 |
| chr4_1 | mRNA | 80943585 | 80945396 | 80943585 | ID=Msa0576840-mRNA-1;Parent=Msa0576840;Name=Msa0576840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=37|0.66|0.75|1|0.66|0.75|4|184|202 |
| chr4_1 | exon | 80943585 | 80943945 | 80943585 | ID=Msa0576840-mRNA-1:exon:29104;Parent=Msa0576840-mRNA-1 |
| chr4_1 | exon | 80944070 | 80944303 | 80944070 | ID=Msa0576840-mRNA-1:exon:29103;Parent=Msa0576840-mRNA-1 |
| chr4_1 | exon | 80944986 | 80945177 | 80944986 | ID=Msa0576840-mRNA-1:exon:29102;Parent=Msa0576840-mRNA-1 |
| chr4_1 | exon | 80945354 | 80945396 | 80945354 | ID=Msa0576840-mRNA-1:exon:29101;Parent=Msa0576840-mRNA-1 |
| chr4_1 | five_prime_UTR | 80945360 | 80945396 | 80945360 | ID=Msa0576840-mRNA-1:five_prime_utr;Parent=Msa0576840-mRNA-1 |
| chr4_1 | CDS | 80945354 | 80945359 | 80945354 | ID=Msa0576840-mRNA-1:cds;Parent=Msa0576840-mRNA-1 |
| chr4_1 | CDS | 80944986 | 80945177 | 80944986 | ID=Msa0576840-mRNA-1:cds;Parent=Msa0576840-mRNA-1 |
| chr4_1 | CDS | 80944070 | 80944303 | 80944070 | ID=Msa0576840-mRNA-1:cds;Parent=Msa0576840-mRNA-1 |
| chr4_1 | CDS | 80943769 | 80943945 | 80943769 | ID=Msa0576840-mRNA-1:cds;Parent=Msa0576840-mRNA-1 |
| chr4_1 | three_prime_UTR | 80943585 | 80943768 | 80943585 | ID=Msa0576840-mRNA-1:three_prime_utr;Parent=Msa0576840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
