Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706250 | XP_003630443.2 | 92.258 | 620 | 25 | 2 | 1 | 604 | 1 | 613 | 0.0 | 1162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706250 | sp|B2V855|GATA_SULSY | 27.033 | 492 | 270 | 14 | 169 | 584 | 7 | 485 | 2.16e-45 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706250 | G7LGJ1 | 92.258 | 620 | 25 | 2 | 1 | 604 | 1 | 613 | 0.0 | 1162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619760 | Msa0706250 | 0.975040 | 3.147707e-139 | -8.615850e-47 |
| Msa0705810 | Msa0706250 | -0.804518 | 2.079178e-49 | -8.615850e-47 |
| Msa0706250 | Msa0734700 | 0.800270 | 1.559103e-48 | -8.615850e-47 |
| Msa0706250 | Msa0817100 | 0.805533 | 1.275273e-49 | -8.615850e-47 |
| Msa0706250 | Msa1036590 | 0.800445 | 1.436327e-48 | -8.615850e-47 |
| Msa0706250 | Msa1076900 | 0.804997 | 1.650947e-49 | -8.615850e-47 |
| Msa0706250 | Msa1211320 | 0.810605 | 1.060856e-50 | -8.615850e-47 |
| Msa0706250 | Msa1220720 | 0.822790 | 1.961449e-53 | -8.615850e-47 |
| Msa0706250 | Msa1253270 | 0.805927 | 1.053879e-49 | -8.615850e-47 |
| Msa0706250 | Msa1258100 | -0.802652 | 5.068201e-49 | -8.615850e-47 |
| Msa0706250 | Msa1265570 | 0.823923 | 1.066209e-53 | -8.615850e-47 |
| Msa0706250 | Msa1288970 | -0.807068 | 6.054183e-50 | -8.615850e-47 |
| Msa0706250 | Msa1334670 | 0.823317 | 1.478589e-53 | -8.615850e-47 |
| Msa0706250 | Msa1350490 | 0.804856 | 1.766855e-49 | -8.615850e-47 |
| Msa0706250 | Msa1363690 | 0.804664 | 1.938392e-49 | -8.615850e-47 |
| Msa0706250 | Msa1365230 | 0.825873 | 3.697536e-54 | -8.615850e-47 |
| Msa0706250 | Msa1369180 | -0.819180 | 1.329905e-52 | -8.615850e-47 |
| Msa0706250 | Msa1376070 | 0.814781 | 1.293309e-51 | -8.615850e-47 |
| Msa0706250 | Msa1377460 | 0.806038 | 9.985053e-50 | -8.615850e-47 |
| Msa0706250 | Msa1396550 | 0.802695 | 4.966123e-49 | -8.615850e-47 |
| Msa0188560 | Msa0706250 | 0.824021 | 1.011222e-53 | -8.615850e-47 |
| Msa0230920 | Msa0706250 | 0.831923 | 1.267383e-55 | -8.615850e-47 |
| Msa0235080 | Msa0706250 | 0.802585 | 5.230874e-49 | -8.615850e-47 |
| Msa0319710 | Msa0706250 | -0.813717 | 2.222189e-51 | -8.615850e-47 |
| Msa0336430 | Msa0706250 | 0.818557 | 1.842552e-52 | -8.615850e-47 |
| Msa0336520 | Msa0706250 | 0.814889 | 1.224025e-51 | -8.615850e-47 |
| Msa0576840 | Msa0706250 | 0.964103 | 6.599252e-123 | -8.615850e-47 |
| Msa0577020 | Msa0706250 | 0.804764 | 1.846903e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706250 | MtrunA17_Chr8g0385461 | 92.258 | 620 | 25 | 2 | 1 | 604 | 1 | 613 | 0.0 | 1162 |
| Msa0706250 | MtrunA17_Chr8g0377691 | 33.058 | 242 | 133 | 7 | 169 | 383 | 40 | 279 | 1.01e-27 | 117 |
| Msa0706250 | MtrunA17_Chr8g0377701 | 34.298 | 242 | 130 | 8 | 169 | 383 | 41 | 280 | 8.38e-27 | 114 |
| Msa0706250 | MtrunA17_Chr8g0377651 | 32.400 | 250 | 140 | 7 | 161 | 383 | 32 | 279 | 1.62e-25 | 110 |
| Msa0706250 | MtrunA17_Chr4g0037521 | 33.333 | 237 | 132 | 5 | 169 | 380 | 34 | 269 | 2.18e-25 | 110 |
| Msa0706250 | MtrunA17_Chr8g0377681 | 32.000 | 250 | 141 | 7 | 161 | 383 | 29 | 276 | 5.82e-25 | 108 |
| Msa0706250 | MtrunA17_Chr8g0377641 | 31.557 | 244 | 138 | 7 | 161 | 377 | 29 | 270 | 3.59e-24 | 106 |
| Msa0706250 | MtrunA17_Chr3g0097801 | 31.197 | 234 | 141 | 4 | 170 | 383 | 43 | 276 | 1.83e-19 | 92.0 |
| Msa0706250 | MtrunA17_Chr3g0130801 | 23.541 | 497 | 295 | 17 | 153 | 582 | 184 | 662 | 2.08e-18 | 89.4 |
| Msa0706250 | MtrunA17_Chr8g0384851 | 23.848 | 499 | 296 | 17 | 154 | 584 | 119 | 601 | 5.18e-16 | 81.6 |
| Msa0706250 | MtrunA17_Chr1g0191741 | 30.263 | 152 | 83 | 3 | 232 | 361 | 26 | 176 | 9.38e-16 | 80.1 |
| Msa0706250 | MtrunA17_Chr4g0037491 | 44.444 | 72 | 40 | 0 | 309 | 380 | 1 | 72 | 1.14e-12 | 69.3 |
| Msa0706250 | MtrunA17_Chr2g0279961 | 26.596 | 188 | 114 | 3 | 215 | 380 | 178 | 363 | 1.82e-12 | 70.5 |
| Msa0706250 | MtrunA17_Chr4g0050371 | 30.667 | 150 | 83 | 3 | 233 | 361 | 73 | 222 | 3.66e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706250 | AT5G07360.1 | 70.849 | 542 | 142 | 1 | 70 | 595 | 105 | 646 | 0.0 | 819 |
| Msa0706250 | AT5G07360.3 | 70.849 | 542 | 142 | 1 | 70 | 595 | 105 | 646 | 0.0 | 819 |
| Msa0706250 | AT5G07360.2 | 69.557 | 542 | 142 | 2 | 70 | 595 | 105 | 639 | 0.0 | 797 |
| Msa0706250 | AT4G34880.2 | 33.333 | 231 | 128 | 5 | 180 | 384 | 55 | 285 | 2.91e-23 | 104 |
| Msa0706250 | AT3G25660.1 | 30.396 | 227 | 128 | 4 | 181 | 383 | 57 | 277 | 6.91e-20 | 94.0 |
| Msa0706250 | AT5G64440.1 | 30.319 | 188 | 107 | 3 | 215 | 380 | 179 | 364 | 1.42e-15 | 80.5 |
| Msa0706250 | AT1G08980.1 | 29.891 | 184 | 104 | 4 | 233 | 392 | 28 | 210 | 5.88e-14 | 74.7 |
| Msa0706250 | AT5G09420.1 | 31.056 | 161 | 87 | 5 | 233 | 372 | 71 | 228 | 4.34e-11 | 66.2 |
Find 180 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGCAAAGCTTGTTTC+TGG | 0.145581 | 4_4:-79229244 | Msa0706250:CDS |
| CGGCCGCCTATTAATGATTT+TGG | 0.178759 | 4_4:-79227073 | Msa0706250:CDS |
| CCTCTTCATGGGATTCCTTA+TGG | 0.207420 | 4_4:-79229473 | Msa0706250:CDS |
| GCAATATCTTCTTCAGATTC+TGG | 0.244608 | 4_4:+79230175 | None:intergenic |
| AGTTAGGAGCATTAGTAATT+TGG | 0.246850 | 4_4:-79226905 | Msa0706250:three_prime_UTR |
| CTCAATATTCCATGGGTTCC+TGG | 0.249322 | 4_4:+79229183 | None:intergenic |
| GTTCAGTGGGCCACTGATCT+TGG | 0.295838 | 4_4:+79228229 | None:intergenic |
| GTTCATATATCCTTCTATTT+CGG | 0.304318 | 4_4:-79230209 | Msa0706250:CDS |
| ACTGCATTGCGTCCAACTTT+TGG | 0.315166 | 4_4:-79228863 | Msa0706250:CDS |
| TTTAACCAGGTTCTTGAGTT+AGG | 0.324762 | 4_4:-79230031 | Msa0706250:intron |
| GGTTCAGAAACTGCATTTAC+AGG | 0.333670 | 4_4:+79231430 | None:intergenic |
| AGAAGGATATATGAACCTTT+TGG | 0.336084 | 4_4:+79230216 | None:intergenic |
| TGTTGTTCTGGATATTGTTC+GGG | 0.341121 | 4_4:-79228663 | Msa0706250:CDS |
| AGAAGCTACAAGTTCTCTAT+TGG | 0.343289 | 4_4:+79230315 | None:intergenic |
| GTTACTACAGCTTCAAGAAT+AGG | 0.347909 | 4_4:+79229821 | None:intergenic |
| TTCGGACCAAAATCATTAAT+AGG | 0.351030 | 4_4:+79227067 | None:intergenic |
| TTCATTGAAGGGCCTCTTCA+TGG | 0.352867 | 4_4:-79229485 | Msa0706250:intron |
| CTTACAATGTGATCATGGTT+AGG | 0.369584 | 4_4:+79227266 | None:intergenic |
| CCTCATTGATGACCCGTTCC+TGG | 0.369936 | 4_4:-79228606 | Msa0706250:CDS |
| TTCAGTGGGCCACTGATCTT+GGG | 0.371795 | 4_4:+79228230 | None:intergenic |
| TTTACCGTGGATGCATTCAT+TGG | 0.377866 | 4_4:-79227437 | Msa0706250:CDS |
| ACTTGATGCCAACTTCTTCA+AGG | 0.382626 | 4_4:-79230469 | Msa0706250:CDS |
| CTTAGCCAAGGAGTCTATCT+AGG | 0.384637 | 4_4:-79229749 | Msa0706250:intron |
| TGTTGATGTTCTTGCGTCAA+TGG | 0.386897 | 4_4:-79228388 | Msa0706250:CDS |
| AAAGCTTGTTTCTGGATCAT+TGG | 0.387846 | 4_4:-79229236 | Msa0706250:CDS |
| TTCAGAATTGAACCTGGGTC+TGG | 0.387904 | 4_4:+79231507 | None:intergenic |
| GTAAACCTAAGGAACATCTT+AGG | 0.389631 | 4_4:+79230490 | None:intergenic |
| TACACAGTTGATTCTGTTCA+AGG | 0.391326 | 4_4:-79228336 | Msa0706250:CDS |
| CTGTTGTTCTGGATATTGTT+CGG | 0.392117 | 4_4:-79228664 | Msa0706250:CDS |
| GCTTATGATGATGTCTGGTT+TGG | 0.393636 | 4_4:-79229214 | Msa0706250:CDS |
| AACTGATTGTGCTGTTGTTC+TGG | 0.393696 | 4_4:-79228675 | Msa0706250:CDS |
| TTTGATCAGTGGCAGCGATC+AGG | 0.394043 | 4_4:-79228273 | Msa0706250:CDS |
| TTTGGTACTGTTGGTCGAAC+TGG | 0.394321 | 4_4:-79228845 | Msa0706250:CDS |
| CATTGGCTTATGATGATGTC+TGG | 0.399917 | 4_4:-79229219 | Msa0706250:CDS |
| GTTCTTCAACATGCTTTCTT+CGG | 0.400483 | 4_4:+79231462 | None:intergenic |
| TTCAACAGGTTGAAATCTGC+AGG | 0.407055 | 4_4:-79229274 | Msa0706250:intron |
| TATGATGATGTCTGGTTTGG+AGG | 0.417149 | 4_4:-79229211 | Msa0706250:CDS |
| ATATGTACATATCAATCTAA+TGG | 0.417478 | 4_4:+79226797 | None:intergenic |
| CTCCGTATCTCCGAAATAGA+AGG | 0.418422 | 4_4:+79230199 | None:intergenic |
| CCCTGCCTAAGATGTTCCTT+AGG | 0.419921 | 4_4:-79230495 | Msa0706250:CDS |
| TGGGATTCCTTATGGATTGA+AGG | 0.421366 | 4_4:-79229465 | Msa0706250:CDS |
| CAACCACGGACCGCCATGAT+AGG | 0.439850 | 4_4:-79226847 | Msa0706250:three_prime_UTR |
| GCAGGCTCTGGCGTTGGCAA+TGG | 0.441140 | 4_4:-79227128 | Msa0706250:intron |
| CCTGCTGAGGTACTTGCTGC+AGG | 0.447687 | 4_4:+79229133 | None:intergenic |
| CTGATCATCCTTGAAGAAGT+TGG | 0.448974 | 4_4:+79230461 | None:intergenic |
| AGCATAAATGCCGGTGGTGA+TGG | 0.450186 | 4_4:+79227292 | None:intergenic |
| TTACAATGTGATCATGGTTA+GGG | 0.450343 | 4_4:+79227267 | None:intergenic |
| CAACTTCTTCAAGGATGATC+AGG | 0.452601 | 4_4:-79230460 | Msa0706250:intron |
| GTAACACCGCATCGAGCTGC+AGG | 0.456235 | 4_4:+79228884 | None:intergenic |
| ATCCTTCTATTTCGGAGATA+CGG | 0.461533 | 4_4:-79230201 | Msa0706250:CDS |
| GAACTTGTAGCTTCTAAGAA+TGG | 0.462031 | 4_4:-79230307 | Msa0706250:CDS |
| GTTGATGTTCTTGCGTCAAT+GGG | 0.462099 | 4_4:-79228387 | Msa0706250:CDS |
| AGTAACTTATACAGAAGAAC+TGG | 0.464189 | 4_4:-79229804 | Msa0706250:CDS |
| TCATTGAAGGGCCTCTTCAT+GGG | 0.464627 | 4_4:-79229484 | Msa0706250:intron |
| CACAATGGATGTTGATATGC+TGG | 0.465451 | 4_4:-79228301 | Msa0706250:CDS |
| TTGATCAGTGGCAGCGATCA+GGG | 0.470688 | 4_4:-79228272 | Msa0706250:CDS |
| GAAAATTCCTCAATATTCCA+TGG | 0.474256 | 4_4:+79229175 | None:intergenic |
| CCAGTCATAGTAGTGCCAAC+AGG | 0.477969 | 4_4:-79227365 | Msa0706250:CDS |
| ACCTAAGGAACATCTTAGGC+AGG | 0.478047 | 4_4:+79230494 | None:intergenic |
| GACATTACTAAGTTGACTGT+TGG | 0.478863 | 4_4:-79228581 | Msa0706250:CDS |
| TCCAGCAGTGGACTATATAC+AGG | 0.480191 | 4_4:-79228187 | Msa0706250:intron |
| TCTGGTTTGGAGGCAGAACC+AGG | 0.481401 | 4_4:-79229201 | Msa0706250:CDS |
| CAGTTCACTGCGCAACCAAA+AGG | 0.481855 | 4_4:-79230231 | Msa0706250:CDS |
| TCAGAATTGAACCTGGGTCT+GGG | 0.482683 | 4_4:+79231508 | None:intergenic |
| CTCTACTTACAATTACAGTT+AGG | 0.483473 | 4_4:-79226921 | Msa0706250:three_prime_UTR |
| GTTTCTGAACCTATCGCAAA+TGG | 0.486252 | 4_4:+79228926 | None:intergenic |
| TGAGGAAGGATATGCGAGAA+GGG | 0.489622 | 4_4:+79231330 | None:intergenic |
| TCGAGCTGCAGGGTAAGTTA+TGG | 0.491305 | 4_4:+79228895 | None:intergenic |
| TCATCCGGTATCTTATCATT+CGG | 0.492160 | 4_4:+79227049 | None:intergenic |
| TAGTAATGTCAACCAGGAAC+GGG | 0.492600 | 4_4:+79228594 | None:intergenic |
| CCGACACGTGGCAGAGGTGG+TGG | 0.497482 | 4_4:-79231409 | Msa0706250:CDS |
| ATTATGTCCTTCAATCCATA+AGG | 0.498873 | 4_4:+79229458 | None:intergenic |
| TTATCTGCAGGCTCTGGCGT+TGG | 0.498954 | 4_4:-79227134 | Msa0706250:intron |
| ACCTGTATATAGTCCACTGC+TGG | 0.504813 | 4_4:+79228186 | None:intergenic |
| TCATTGGAAATGCAACTGAC+TGG | 0.506344 | 4_4:-79227421 | Msa0706250:CDS |
| TGCGTCAATGGGTGTCAAGA+TGG | 0.506908 | 4_4:-79228376 | Msa0706250:CDS |
| CTTCTTCTGCTGCCACCAGA+TGG | 0.509439 | 4_4:+79227320 | None:intergenic |
| GTATGCATAGGCAACCTTGT+TGG | 0.515233 | 4_4:-79227392 | Msa0706250:CDS |
| ACAAACTTACAATGTGATCA+TGG | 0.515711 | 4_4:+79227261 | None:intergenic |
| ACTGTGTAATTCAGTTTGAA+AGG | 0.517352 | 4_4:+79228351 | None:intergenic |
| AACTAAACAAATTACTTCGC+AGG | 0.517999 | 4_4:-79229996 | Msa0706250:CDS |
| CCTGTTGGCACTACTATGAC+TGG | 0.521941 | 4_4:+79227365 | None:intergenic |
| CATACAGGCACAACGAGCAC+GGG | 0.522092 | 4_4:-79227489 | Msa0706250:intron |
| TCATCACGGTCCACCTATCA+TGG | 0.525268 | 4_4:+79226834 | None:intergenic |
| GTGAGGAAGGATATGCGAGA+AGG | 0.530767 | 4_4:+79231329 | None:intergenic |
| TTAGATTGACGAGATTGCTA+AGG | 0.531406 | 4_4:-79230371 | Msa0706250:intron |
| TAACCTTTATAGGATAAGCT+TGG | 0.532243 | 4_4:-79228716 | Msa0706250:intron |
| GCGATAGGTTCAGAAACAGC+TGG | 0.533367 | 4_4:-79228920 | Msa0706250:CDS |
| CTATAGATGCTTACCACCCA+GGG | 0.535077 | 4_4:-79227021 | Msa0706250:CDS |
| AATGAGCATATCAGAAAGCT+TGG | 0.537743 | 4_4:-79228819 | Msa0706250:intron |
| CTGCTGGAACTAAGCGGGCA+CGG | 0.538133 | 4_4:+79228202 | None:intergenic |
| AATATCTCTGATCTACCATC+TGG | 0.539127 | 4_4:-79227335 | Msa0706250:CDS |
| AACAACCTAGATAGACTCCT+TGG | 0.539798 | 4_4:+79229744 | None:intergenic |
| CCTTGAGCAACTGGGTGAAA+CGG | 0.543738 | 4_4:-79226990 | Msa0706250:CDS |
| GAAGAACAAAGTGGTGAGGA+AGG | 0.544988 | 4_4:+79231316 | None:intergenic |
| CAATCCGCACTGAAAACTAA+AGG | 0.546483 | 4_4:+79230265 | None:intergenic |
| GCGGGCACGGTGTAGTTCAG+TGG | 0.548100 | 4_4:+79228215 | None:intergenic |
| TAATAGGCGGCCGCTGTATG+TGG | 0.551335 | 4_4:+79227083 | None:intergenic |
| CTGCTGAGGTACTTGCTGCA+GGG | 0.553691 | 4_4:+79229134 | None:intergenic |
| TCTATAGATGCTTACCACCC+AGG | 0.553920 | 4_4:-79227022 | Msa0706250:CDS |
| CATTGGAAATGCAACTGACT+GGG | 0.557301 | 4_4:-79227420 | Msa0706250:CDS |
| CCTGCAGCAAGTACCTCAGC+AGG | 0.559110 | 4_4:-79229133 | Msa0706250:intron |
| GCATCTATAGATGCATCATC+CGG | 0.560420 | 4_4:+79227034 | None:intergenic |
| AATCTAATGGCTATAAGTTG+TGG | 0.560486 | 4_4:+79226810 | None:intergenic |
| TGGTCCGAATGATAAGATAC+CGG | 0.560910 | 4_4:-79227053 | Msa0706250:CDS |
| GCACTGAAAACTAAAGGTGA+TGG | 0.561148 | 4_4:+79230271 | None:intergenic |
| GTTGGCATCAAGTAAACCTA+AGG | 0.563829 | 4_4:+79230479 | None:intergenic |
| CGACCAACAGTACCAAAAGT+TGG | 0.564707 | 4_4:+79228851 | None:intergenic |
| CGGGCACGGTGTAGTTCAGT+GGG | 0.565602 | 4_4:+79228216 | None:intergenic |
| CCGTTTCACCCAGTTGCTCA+AGG | 0.565634 | 4_4:+79226990 | None:intergenic |
| TTAGTAATGTCAACCAGGAA+CGG | 0.565845 | 4_4:+79228593 | None:intergenic |
| TCAGTTGCGGATCTACAGAA+AGG | 0.566963 | 4_4:+79228692 | None:intergenic |
| AAAATTCCTCAATATTCCAT+GGG | 0.567370 | 4_4:+79229176 | None:intergenic |
| GGAATGGTTCCATTTGCGAT+AGG | 0.568596 | 4_4:-79228935 | Msa0706250:CDS |
| TACAATGTGATCATGGTTAG+GGG | 0.570554 | 4_4:+79227268 | None:intergenic |
| TAGATTGACGAGATTGCTAA+GGG | 0.573146 | 4_4:-79230370 | Msa0706250:CDS |
| GAGATATTAGTAAATCCTGT+TGG | 0.573168 | 4_4:+79227350 | None:intergenic |
| GAGGCAGAACCAGGAACCCA+TGG | 0.574434 | 4_4:-79229192 | Msa0706250:CDS |
| GCATACAGGCACAACGAGCA+CGG | 0.575352 | 4_4:-79227490 | Msa0706250:intron |
| CAGGAACCCATGGAATATTG+AGG | 0.577153 | 4_4:-79229182 | Msa0706250:CDS |
| ACAAGTAGAATTACCATGAT+CGG | 0.577662 | 4_4:+79231280 | None:intergenic |
| CAGTTGCGGATCTACAGAAA+GGG | 0.578399 | 4_4:+79228693 | None:intergenic |
| GTCCACTGCTGGAACTAAGC+GGG | 0.581518 | 4_4:+79228197 | None:intergenic |
| TCTGAACCGACACGTGGCAG+AGG | 0.581655 | 4_4:-79231415 | Msa0706250:CDS |
| AGGCACAACGAGCACGGGGA+AGG | 0.582434 | 4_4:-79227484 | Msa0706250:CDS |
| GTAGAATTACCATGATCGGT+TGG | 0.583196 | 4_4:+79231284 | None:intergenic |
| CCACGGACCGCCATGATAGG+TGG | 0.584704 | 4_4:-79226844 | Msa0706250:three_prime_UTR |
| TGCCCGCTTAGTTCCAGCAG+TGG | 0.587159 | 4_4:-79228199 | Msa0706250:CDS |
| CCACCTATCATGGCGGTCCG+TGG | 0.588115 | 4_4:+79226844 | None:intergenic |
| AGCTTACACAAATATTCTTG+CGG | 0.595183 | 4_4:-79229973 | Msa0706250:CDS |
| GAACCGACACGTGGCAGAGG+TGG | 0.595634 | 4_4:-79231412 | Msa0706250:CDS |
| AGAAGAACCACCATCACCAC+CGG | 0.596076 | 4_4:-79227302 | Msa0706250:CDS |
| TCTTGATGATGCCGAGATGG+AGG | 0.598342 | 4_4:-79228555 | Msa0706250:intron |
| TTGTAGCTTCTAAGAATGGA+GGG | 0.601229 | 4_4:-79230303 | Msa0706250:CDS |
| CTTGTAGCTTCTAAGAATGG+AGG | 0.602574 | 4_4:-79230304 | Msa0706250:CDS |
| GCTGATGAATTGCTTAGCCA+AGG | 0.603099 | 4_4:-79229761 | Msa0706250:CDS |
| CCTAAGGAACATCTTAGGCA+GGG | 0.603224 | 4_4:+79230495 | None:intergenic |
| ATCTCTGATCTACCATCTGG+TGG | 0.603930 | 4_4:-79227332 | Msa0706250:CDS |
| TGCCAGAATACAAAACAACA+TGG | 0.604012 | 4_4:-79229430 | Msa0706250:CDS |
| ACTTGCTGCAGGGCCAGCAG+AGG | 0.610001 | 4_4:+79229144 | None:intergenic |
| AGGTATATTAAATTTCACAA+TGG | 0.611101 | 4_4:-79228316 | Msa0706250:CDS |
| TGCTGGCTCACTTTGATCAG+TGG | 0.611485 | 4_4:-79228284 | Msa0706250:CDS |
| GCCAGAATACAAAACAACAT+GGG | 0.614131 | 4_4:-79229429 | Msa0706250:CDS |
| TCAACAGGTTGAAATCTGCA+GGG | 0.616666 | 4_4:-79229273 | Msa0706250:intron |
| CAGCCGACAAACCTCCATCT+CGG | 0.617061 | 4_4:+79228544 | None:intergenic |
| CAGAGTTCAGAATTGAACCT+GGG | 0.618362 | 4_4:+79231502 | None:intergenic |
| ATTTCCAATGAATGCATCCA+CGG | 0.620639 | 4_4:+79227433 | None:intergenic |
| GTTGGAAGAACAAAGTGGTG+AGG | 0.621389 | 4_4:+79231312 | None:intergenic |
| TGATCAGTGGCAGCGATCAG+GGG | 0.622019 | 4_4:-79228271 | Msa0706250:CDS |
| CTATGACTGGTAAACCAACA+AGG | 0.623059 | 4_4:+79227378 | None:intergenic |
| AAGAAAGAACTCCCAGACCC+AGG | 0.623595 | 4_4:-79231519 | Msa0706250:five_prime_UTR |
| TCAGAGTTCAGAATTGAACC+TGG | 0.624654 | 4_4:+79231501 | None:intergenic |
| ATATCTTGATGATGCCGAGA+TGG | 0.625613 | 4_4:-79228558 | Msa0706250:CDS |
| CCACCACCTCTGCCACGTGT+CGG | 0.626864 | 4_4:+79231409 | None:intergenic |
| ATAAATGCCGGTGGTGATGG+TGG | 0.632691 | 4_4:+79227295 | None:intergenic |
| CCATAAGGAATCCCATGAAG+AGG | 0.635203 | 4_4:+79229473 | None:intergenic |
| GAGGAAGGATATGCGAGAAG+GGG | 0.635335 | 4_4:+79231331 | None:intergenic |
| CCAGGAACGGGTCATCAATG+AGG | 0.635918 | 4_4:+79228606 | None:intergenic |
| AACAACAGCACAATCAGTTG+CGG | 0.636172 | 4_4:+79228679 | None:intergenic |
| CTAACTGTAATTGTAAGTAG+AGG | 0.643764 | 4_4:+79226922 | None:intergenic |
| TGTATGAAGCCCAAGATCAG+TGG | 0.644206 | 4_4:-79228239 | Msa0706250:CDS |
| TCAACTTAGTAATGTCAACC+AGG | 0.651939 | 4_4:+79228588 | None:intergenic |
| AACTCTGAACTTAACGAGAG+CGG | 0.655935 | 4_4:-79231486 | Msa0706250:five_prime_UTR |
| CTATAAGTTGTGGTTCATCA+CGG | 0.660037 | 4_4:+79226820 | None:intergenic |
| ACTTACCCTGCAGCTCGATG+CGG | 0.661226 | 4_4:-79228890 | Msa0706250:CDS |
| CAACAGGTTGAAATCTGCAG+GGG | 0.661659 | 4_4:-79229272 | Msa0706250:intron |
| TCAGTGGCAGCGATCAGGGG+AGG | 0.663073 | 4_4:-79228268 | Msa0706250:CDS |
| CCAGAATACAAAACAACATG+GGG | 0.665616 | 4_4:-79229428 | Msa0706250:CDS |
| ATATGCGAGAAGGGGAACAA+CGG | 0.666354 | 4_4:+79231339 | None:intergenic |
| ACAATGTGATCATGGTTAGG+GGG | 0.666722 | 4_4:+79227269 | None:intergenic |
| GACTGGGAGAAAGTATGCAT+AGG | 0.666730 | 4_4:-79227404 | Msa0706250:CDS |
| TAACACCGCATCGAGCTGCA+GGG | 0.681888 | 4_4:+79228885 | None:intergenic |
| TAATTGAAGAGTACCTGCTG+AGG | 0.688194 | 4_4:+79229120 | None:intergenic |
| AGTCCACTGCTGGAACTAAG+CGG | 0.695324 | 4_4:+79228196 | None:intergenic |
| GCAGTTTCTGAACCGACACG+TGG | 0.699421 | 4_4:-79231421 | Msa0706250:CDS |
| ATACAGGCACAACGAGCACG+GGG | 0.699547 | 4_4:-79227488 | Msa0706250:intron |
| GTTGTTCTGGATATTGTTCG+GGG | 0.705893 | 4_4:-79228662 | Msa0706250:CDS |
| TTACTAATCACCACATACAG+CGG | 0.709492 | 4_4:-79227093 | Msa0706250:CDS |
| GGACCAAAATCATTAATAGG+CGG | 0.713080 | 4_4:+79227070 | None:intergenic |
| TCACGGTCCACCTATCATGG+CGG | 0.726108 | 4_4:+79226837 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTAATTCATTAATTTA+TGG | + | chr4_4:79227264-79227283 | None:intergenic | 10.0% |
| !!! | TACAATTAAAATCAATTTTT+CGG | + | chr4_4:79228363-79228382 | None:intergenic | 10.0% |
| !!! | ATCAATAACGTTTTTTTTTA+AGG | - | chr4_4:79226861-79226880 | Msa0706250:three_prime_UTR | 15.0% |
| !!! | TATTTTTTTTAATAGAGGAA+AGG | + | chr4_4:79227473-79227492 | None:intergenic | 15.0% |
| !! | AGAGTAAATATTTCAAAAAT+TGG | + | chr4_4:79228566-79228585 | None:intergenic | 15.0% |
| !!! | GGTTTAATTTAACTATTTAA+TGG | + | chr4_4:79230330-79230349 | None:intergenic | 15.0% |
| !!! | CAATTGTATATTAATTTTGA+TGG | - | chr4_4:79230820-79230839 | Msa0706250:intron | 15.0% |
| !! | CTAAAGATAAAATAAACTAA+TGG | + | chr4_4:79230935-79230954 | None:intergenic | 15.0% |
| !! | TTAGAATCGTAAAAAGAATA+TGG | - | chr4_4:79227348-79227367 | Msa0706250:CDS | 20.0% |
| !!! | GCTGATATTTTTTTTAATAG+AGG | + | chr4_4:79227478-79227497 | None:intergenic | 20.0% |
| !!! | ATGTTTATGTCATCTTTTAT+CGG | + | chr4_4:79227690-79227709 | None:intergenic | 20.0% |
| !!! | GATGTAATTATTTTATCATG+AGG | - | chr4_4:79228386-79228405 | Msa0706250:CDS | 20.0% |
| !! | ATACAAGATGAATAGAAATT+AGG | - | chr4_4:79228798-79228817 | Msa0706250:intron | 20.0% |
| !!! | TCTTTTAAATAGTACTTTTG+CGG | - | chr4_4:79228858-79228877 | Msa0706250:CDS | 20.0% |
| !!! | TAAATTTTGGTTTTCATTGA+AGG | - | chr4_4:79228980-79228999 | Msa0706250:intron | 20.0% |
| !!! | AAATTTTGGTTTTCATTGAA+GGG | - | chr4_4:79228981-79229000 | Msa0706250:intron | 20.0% |
| !! | TAAAAATCAAGTTATTGACA+TGG | - | chr4_4:79229084-79229103 | Msa0706250:intron | 20.0% |
| !! | AAATAAACCATATATCAGAA+AGG | + | chr4_4:79229426-79229445 | None:intergenic | 20.0% |
| !!! | AAGGAAACAAACAAAATTTT+AGG | + | chr4_4:79229471-79229490 | None:intergenic | 20.0% |
| !!! | TTGATTTTGTTTATTGTGAT+AGG | - | chr4_4:79229521-79229540 | Msa0706250:intron | 20.0% |
| !!! | ACAATTTTAAGTTTTTCCAA+AGG | + | chr4_4:79229709-79229728 | None:intergenic | 20.0% |
| !! | CATGTCTTTACAATAAAAAT+TGG | + | chr4_4:79229960-79229979 | None:intergenic | 20.0% |
| !! | AAAAAATGGAAATGACTATA+TGG | + | chr4_4:79230014-79230033 | None:intergenic | 20.0% |
| !! | AGGTATATTAAATTTCACAA+TGG | - | chr4_4:79230161-79230180 | Msa0706250:intron | 20.0% |
| !! | TTACTATAAAAAAGATGAGA+TGG | + | chr4_4:79230351-79230370 | None:intergenic | 20.0% |
| !!! | TTTTATAGTAAGACAATTTG+CGG | - | chr4_4:79230360-79230379 | Msa0706250:CDS | 20.0% |
| !!! | AATAAAACACATGTTGATTT+AGG | - | chr4_4:79230697-79230716 | Msa0706250:intron | 20.0% |
| !!! | TATGCTTCTAAATTTTTACT+AGG | - | chr4_4:79231256-79231275 | Msa0706250:intron | 20.0% |
| !! | ATATGTACATATCAATCTAA+TGG | + | chr4_4:79231683-79231702 | None:intergenic | 20.0% |
| ! | CTATATCCAAATCTAACATA+GGG | + | chr4_4:79227514-79227533 | None:intergenic | 25.0% |
| ! | ACTATATCCAAATCTAACAT+AGG | + | chr4_4:79227515-79227534 | None:intergenic | 25.0% |
| ! | TGTAACTAATTCAATAACAG+AGG | - | chr4_4:79227542-79227561 | Msa0706250:intron | 25.0% |
| ! | ATGAAAATAACGAGCTATAT+AGG | + | chr4_4:79227885-79227904 | None:intergenic | 25.0% |
| !!! | TTTCCTATTTGTTATCAATC+AGG | - | chr4_4:79227915-79227934 | Msa0706250:intron | 25.0% |
| !!! | TTCCTATTTGTTATCAATCA+GGG | - | chr4_4:79227916-79227935 | Msa0706250:intron | 25.0% |
| !! | GCAAAATCAATTTTCAGATA+AGG | - | chr4_4:79227948-79227967 | Msa0706250:intron | 25.0% |
| !!! | TAATTTCGATTTTGATGACT+TGG | - | chr4_4:79228040-79228059 | Msa0706250:intron | 25.0% |
| !!! | TCTCTATTGGCTTTTATAAT+TGG | + | chr4_4:79228152-79228171 | None:intergenic | 25.0% |
| ! | GTTCATATATCCTTCTATTT+CGG | - | chr4_4:79228268-79228287 | Msa0706250:CDS | 25.0% |
| ! | AACCTGGTTAAAAACAAATA+GGG | + | chr4_4:79228438-79228457 | None:intergenic | 25.0% |
| ! | TCTTAATTAACTTTATCTCC+TGG | - | chr4_4:79228614-79228633 | Msa0706250:CDS | 25.0% |
| ! | AAAATTCCTCAATATTCCAT+GGG | + | chr4_4:79229304-79229323 | None:intergenic | 25.0% |
| !! | GAATATTGAGGAATTTTCTA+CGG | - | chr4_4:79229307-79229326 | Msa0706250:intron | 25.0% |
| !! | AATATTGAGGAATTTTCTAC+GGG | - | chr4_4:79229308-79229327 | Msa0706250:intron | 25.0% |
| !!! | TGGTTTATTTTACGATTTAC+TGG | - | chr4_4:79229436-79229455 | Msa0706250:CDS | 25.0% |
| ! | TTTGTTTATTGTGATAGGAA+TGG | - | chr4_4:79229526-79229545 | Msa0706250:intron | 25.0% |
| !!! | TCCATTTTTTGAATGTTGTT+AGG | - | chr4_4:79230024-79230043 | Msa0706250:CDS | 25.0% |
| ! | TCCTAACAACATTCAAAAAA+TGG | + | chr4_4:79230028-79230047 | None:intergenic | 25.0% |
| !! | ATAGAACTAGATGAGATTTT+AGG | - | chr4_4:79230393-79230412 | Msa0706250:intron | 25.0% |
| ! | ACTGCTACATAAATTACTTT+GGG | + | chr4_4:79230443-79230462 | None:intergenic | 25.0% |
| !!! | CATGTGTTTTATTCTTTTTG+CGG | + | chr4_4:79230690-79230709 | None:intergenic | 25.0% |
| ! | AGATTTGAATTATTGCATAC+AGG | - | chr4_4:79230973-79230992 | Msa0706250:intron | 25.0% |
| TGATGATAAGATCATACAGT+AGG | + | chr4_4:79226837-79226856 | None:intergenic | 30.0% | |
| ! | TTTTTGTTGGAAGAACAAAG+TGG | + | chr4_4:79227173-79227192 | None:intergenic | 30.0% |
| ACAAGTAGAATTACCATGAT+CGG | + | chr4_4:79227200-79227219 | None:intergenic | 30.0% | |
| TTGTTTGAGTGAATTACCAA+AGG | - | chr4_4:79227440-79227459 | Msa0706250:CDS | 30.0% | |
| ACTAAACCCTATGTTAGATT+TGG | - | chr4_4:79227505-79227524 | Msa0706250:intron | 30.0% | |
| !! | GTTGTTTTCATTAGCTATCT+TGG | + | chr4_4:79227740-79227759 | None:intergenic | 30.0% |
| ! | TTCCCTGATTGATAACAAAT+AGG | + | chr4_4:79227921-79227940 | None:intergenic | 30.0% |
| ! | AGAAGGATATATGAACCTTT+TGG | + | chr4_4:79228264-79228283 | None:intergenic | 30.0% |
| ! | ATGAGGTACTATTTCATGAT+TGG | - | chr4_4:79228403-79228422 | Msa0706250:intron | 30.0% |
| !!! | TTCCCTATTTGTTTTTAACC+AGG | - | chr4_4:79228433-79228452 | Msa0706250:intron | 30.0% |
| GAACCTGGTTAAAAACAAAT+AGG | + | chr4_4:79228439-79228458 | None:intergenic | 30.0% | |
| AACTAAACAAATTACTTCGC+AGG | - | chr4_4:79228481-79228500 | Msa0706250:intron | 30.0% | |
| AGCTTACACAAATATTCTTG+CGG | - | chr4_4:79228504-79228523 | Msa0706250:intron | 30.0% | |
| GGAGAATGAAAAAGTAGTAT+CGG | - | chr4_4:79228525-79228544 | Msa0706250:intron | 30.0% | |
| AGTAACTTATACAGAAGAAC+TGG | - | chr4_4:79228673-79228692 | Msa0706250:CDS | 30.0% | |
| TGTTCATAACTTTACACTCT+AGG | + | chr4_4:79228766-79228785 | None:intergenic | 30.0% | |
| TTCTATTCATCTTGTATAGC+AGG | + | chr4_4:79228795-79228814 | None:intergenic | 30.0% | |
| ATTATGTCCTTCAATCCATA+AGG | + | chr4_4:79229022-79229041 | None:intergenic | 30.0% | |
| !! | TATTGATGATGTTGTTCAAC+AGG | - | chr4_4:79229189-79229208 | Msa0706250:CDS | 30.0% |
| GAAAATTCCTCAATATTCCA+TGG | + | chr4_4:79229305-79229324 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTTCTGTCTTTTAG+AGG | - | chr4_4:79229399-79229418 | Msa0706250:intron | 30.0% |
| GTTTGTTTCCTTTATATGTG+AGG | - | chr4_4:79229479-79229498 | Msa0706250:intron | 30.0% | |
| AAATTACCATGTTCTACCTT+TGG | - | chr4_4:79229690-79229709 | Msa0706250:intron | 30.0% | |
| GTAAGTTGTGTAACCTTTAT+AGG | - | chr4_4:79229751-79229770 | Msa0706250:CDS | 30.0% | |
| TAACCTTTATAGGATAAGCT+TGG | - | chr4_4:79229761-79229780 | Msa0706250:CDS | 30.0% | |
| ! | ATGAGGATATCTTTTGATGA+GGG | + | chr4_4:79229857-79229876 | None:intergenic | 30.0% |
| ! | AATGAGGATATCTTTTGATG+AGG | + | chr4_4:79229858-79229877 | None:intergenic | 30.0% |
| GGAAATGACTATATGGAATT+TGG | + | chr4_4:79230007-79230026 | None:intergenic | 30.0% | |
| ACTGTGTAATTCAGTTTGAA+AGG | + | chr4_4:79230129-79230148 | None:intergenic | 30.0% | |
| CACTGCTACATAAATTACTT+TGG | + | chr4_4:79230444-79230463 | None:intergenic | 30.0% | |
| ! | TTTTTCTATCTGTGCTTCAT+AGG | - | chr4_4:79230577-79230596 | Msa0706250:intron | 30.0% |
| GAGATATTAGTAAATCCTGT+TGG | + | chr4_4:79231130-79231149 | None:intergenic | 30.0% | |
| TTACAATGTGATCATGGTTA+GGG | + | chr4_4:79231213-79231232 | None:intergenic | 30.0% | |
| ACAAACTTACAATGTGATCA+TGG | + | chr4_4:79231219-79231238 | None:intergenic | 30.0% | |
| TTCGGACCAAAATCATTAAT+AGG | + | chr4_4:79231413-79231432 | None:intergenic | 30.0% | |
| CTAACTGTAATTGTAAGTAG+AGG | + | chr4_4:79231558-79231577 | None:intergenic | 30.0% | |
| CTCTACTTACAATTACAGTT+AGG | - | chr4_4:79231556-79231575 | Msa0706250:intron | 30.0% | |
| !! | AGTTAGGAGCATTAGTAATT+TGG | - | chr4_4:79231572-79231591 | Msa0706250:intron | 30.0% |
| !!! | TGCTCATTTTAGAGCTAAAA+AGG | - | chr4_4:79231601-79231620 | Msa0706250:intron | 30.0% |
| !!! | GCTCATTTTAGAGCTAAAAA+GGG | - | chr4_4:79231602-79231621 | Msa0706250:intron | 30.0% |
| AATCTAATGGCTATAAGTTG+TGG | + | chr4_4:79231670-79231689 | None:intergenic | 30.0% | |
| GTTCTTCAACATGCTTTCTT+CGG | + | chr4_4:79227018-79227037 | None:intergenic | 35.0% | |
| AACCTGTTGTACATTTGTCA+GGG | + | chr4_4:79227330-79227349 | None:intergenic | 35.0% | |
| TAACCTGTTGTACATTTGTC+AGG | + | chr4_4:79227331-79227350 | None:intergenic | 35.0% | |
| ACTAACTAACCTGCAATTTG+CGG | + | chr4_4:79227385-79227404 | None:intergenic | 35.0% | |
| ! | CAGGTTAGTTAGTTAGTTAG+TGG | - | chr4_4:79227392-79227411 | Msa0706250:CDS | 35.0% |
| TGGTAATTCACTCAAACAAG+TGG | + | chr4_4:79227439-79227458 | None:intergenic | 35.0% | |
| GATGTGATGAACTGTAATGT+TGG | - | chr4_4:79227584-79227603 | Msa0706250:intron | 35.0% | |
| ! | GATGAACTGTAATGTTGGTT+TGG | - | chr4_4:79227589-79227608 | Msa0706250:intron | 35.0% |
| TGACTGTTACTCTTGAACTT+GGG | + | chr4_4:79227618-79227637 | None:intergenic | 35.0% | |
| ! | ATGTCATCTTTTATCGGATG+TGG | + | chr4_4:79227684-79227703 | None:intergenic | 35.0% |
| TCAAGTTCTTTAGCCAAACA+TGG | - | chr4_4:79227840-79227859 | Msa0706250:intron | 35.0% | |
| TGCAAAATTTGAGCCATGTT+TGG | + | chr4_4:79227856-79227875 | None:intergenic | 35.0% | |
| GTAAACCTAAGGAACATCTT+AGG | + | chr4_4:79227990-79228009 | None:intergenic | 35.0% | |
| TTAGATTGACGAGATTGCTA+AGG | - | chr4_4:79228106-79228125 | Msa0706250:intron | 35.0% | |
| TAGATTGACGAGATTGCTAA+GGG | - | chr4_4:79228107-79228126 | Msa0706250:intron | 35.0% | |
| AGAAGCTACAAGTTCTCTAT+TGG | + | chr4_4:79228165-79228184 | None:intergenic | 35.0% | |
| ! | GAACTTGTAGCTTCTAAGAA+TGG | - | chr4_4:79228170-79228189 | Msa0706250:intron | 35.0% |
| ! | TTGTAGCTTCTAAGAATGGA+GGG | - | chr4_4:79228174-79228193 | Msa0706250:intron | 35.0% |
| !!! | ATCACCTTTAGTTTTCAGTG+CGG | - | chr4_4:79228208-79228227 | Msa0706250:CDS | 35.0% |
| !!! | TTTAGTTTTCAGTGCGGATT+GGG | - | chr4_4:79228214-79228233 | Msa0706250:CDS | 35.0% |
| ATCCTTCTATTTCGGAGATA+CGG | - | chr4_4:79228276-79228295 | Msa0706250:CDS | 35.0% | |
| GCAATATCTTCTTCAGATTC+TGG | + | chr4_4:79228305-79228324 | None:intergenic | 35.0% | |
| TTTAACCAGGTTCTTGAGTT+AGG | - | chr4_4:79228446-79228465 | Msa0706250:intron | 35.0% | |
| TTCAAGAATAGGATTGTACC+TGG | + | chr4_4:79228648-79228667 | None:intergenic | 35.0% | |
| GTTACTACAGCTTCAAGAAT+AGG | + | chr4_4:79228659-79228678 | None:intergenic | 35.0% | |
| CATATACAGTACATCCCAAA+AGG | + | chr4_4:79228929-79228948 | None:intergenic | 35.0% | |
| TGCCAGAATACAAAACAACA+TGG | - | chr4_4:79229047-79229066 | Msa0706250:intron | 35.0% | |
| GCCAGAATACAAAACAACAT+GGG | - | chr4_4:79229048-79229067 | Msa0706250:intron | 35.0% | |
| CCAGAATACAAAACAACATG+GGG | - | chr4_4:79229049-79229068 | Msa0706250:intron | 35.0% | |
| AAGTTATTGACATGGAAGCT+TGG | - | chr4_4:79229092-79229111 | Msa0706250:intron | 35.0% | |
| TGGAAGCTTGGATCTATAAA+AGG | - | chr4_4:79229104-79229123 | Msa0706250:intron | 35.0% | |
| ! | CTTATTGCAAAGCTTGTTTC+TGG | - | chr4_4:79229233-79229252 | Msa0706250:CDS | 35.0% |
| !! | AAAGCTTGTTTCTGGATCAT+TGG | - | chr4_4:79229241-79229260 | Msa0706250:CDS | 35.0% |
| ! | AAACAAAAGTGCAAGCGTTT+AGG | + | chr4_4:79229388-79229407 | None:intergenic | 35.0% |
| TAGAGGTCCTTTCTGATATA+TGG | - | chr4_4:79229416-79229435 | Msa0706250:intron | 35.0% | |
| AATGAGCATATCAGAAAGCT+TGG | - | chr4_4:79229658-79229677 | Msa0706250:intron | 35.0% | |
| ! | GTTTTTCCAAAGGTAGAACA+TGG | + | chr4_4:79229699-79229718 | None:intergenic | 35.0% |
| ! | CTGTTGTTCTGGATATTGTT+CGG | - | chr4_4:79229813-79229832 | Msa0706250:CDS | 35.0% |
| ! | TGTTGTTCTGGATATTGTTC+GGG | - | chr4_4:79229814-79229833 | Msa0706250:CDS | 35.0% |
| TTAGTAATGTCAACCAGGAA+CGG | + | chr4_4:79229887-79229906 | None:intergenic | 35.0% | |
| TCAACTTAGTAATGTCAACC+AGG | + | chr4_4:79229892-79229911 | None:intergenic | 35.0% | |
| ! | GACATTACTAAGTTGACTGT+TGG | - | chr4_4:79229896-79229915 | Msa0706250:intron | 35.0% |
| ! | TACACAGTTGATTCTGTTCA+AGG | - | chr4_4:79230141-79230160 | Msa0706250:intron | 35.0% |
| ! | AATAAGAGAGTCTTTTACCG+TGG | - | chr4_4:79231027-79231046 | Msa0706250:intron | 35.0% |
| ATTTCCAATGAATGCATCCA+CGG | + | chr4_4:79231047-79231066 | None:intergenic | 35.0% | |
| AATATCTCTGATCTACCATC+TGG | - | chr4_4:79231142-79231161 | Msa0706250:intron | 35.0% | |
| TACAATGTGATCATGGTTAG+GGG | + | chr4_4:79231212-79231231 | None:intergenic | 35.0% | |
| CTTACAATGTGATCATGGTT+AGG | + | chr4_4:79231214-79231233 | None:intergenic | 35.0% | |
| TTACTAATCACCACATACAG+CGG | - | chr4_4:79231384-79231403 | Msa0706250:CDS | 35.0% | |
| GGACCAAAATCATTAATAGG+CGG | + | chr4_4:79231410-79231429 | None:intergenic | 35.0% | |
| TCATCCGGTATCTTATCATT+CGG | + | chr4_4:79231431-79231450 | None:intergenic | 35.0% | |
| TAAAAAGGGTAGATCAACCA+CGG | - | chr4_4:79231616-79231635 | Msa0706250:intron | 35.0% | |
| CTATAAGTTGTGGTTCATCA+CGG | + | chr4_4:79231660-79231679 | None:intergenic | 35.0% | |
| CAGAGTTCAGAATTGAACCT+GGG | + | chr4_4:79226978-79226997 | None:intergenic | 40.0% | |
| TCAGAGTTCAGAATTGAACC+TGG | + | chr4_4:79226979-79226998 | None:intergenic | 40.0% | |
| AACTCTGAACTTAACGAGAG+CGG | - | chr4_4:79226991-79227010 | Msa0706250:CDS | 40.0% | |
| GGTTCAGAAACTGCATTTAC+AGG | + | chr4_4:79227050-79227069 | None:intergenic | 40.0% | |
| !!! | CATGATCGGTTGGTTTTTGT+TGG | + | chr4_4:79227186-79227205 | None:intergenic | 40.0% |
| CAACAAAAACCAACCGATCA+TGG | - | chr4_4:79227184-79227203 | Msa0706250:intron | 40.0% | |
| GTAGAATTACCATGATCGGT+TGG | + | chr4_4:79227196-79227215 | None:intergenic | 40.0% | |
| TGGACAGTAAGAAACAGAGT+TGG | + | chr4_4:79227244-79227263 | None:intergenic | 40.0% | |
| ACCTGTTGTACATTTGTCAG+GGG | + | chr4_4:79227329-79227348 | None:intergenic | 40.0% | |
| AATATTCTGCCGCAAATTGC+AGG | - | chr4_4:79227373-79227392 | Msa0706250:CDS | 40.0% | |
| GACTGTTACTCTTGAACTTG+GGG | + | chr4_4:79227617-79227636 | None:intergenic | 40.0% | |
| CTGACTGTTACTCTTGAACT+TGG | + | chr4_4:79227619-79227638 | None:intergenic | 40.0% | |
| GTTGGCATCAAGTAAACCTA+AGG | + | chr4_4:79228001-79228020 | None:intergenic | 40.0% | |
| ACTTGATGCCAACTTCTTCA+AGG | - | chr4_4:79228008-79228027 | Msa0706250:intron | 40.0% | |
| CTGATCATCCTTGAAGAAGT+TGG | + | chr4_4:79228019-79228038 | None:intergenic | 40.0% | |
| CAACTTCTTCAAGGATGATC+AGG | - | chr4_4:79228017-79228036 | Msa0706250:intron | 40.0% | |
| ! | GAGTTGTTACAGTTGATGCT+TGG | - | chr4_4:79228062-79228081 | Msa0706250:intron | 40.0% |
| ! | TTGTTACAGTTGATGCTTGG+TGG | - | chr4_4:79228065-79228084 | Msa0706250:intron | 40.0% |
| AGCAATCTCGTCAATCTAAG+AGG | + | chr4_4:79228105-79228124 | None:intergenic | 40.0% | |
| ! | CTTGTAGCTTCTAAGAATGG+AGG | - | chr4_4:79228173-79228192 | Msa0706250:intron | 40.0% |
| GCACTGAAAACTAAAGGTGA+TGG | + | chr4_4:79228209-79228228 | None:intergenic | 40.0% | |
| CAATCCGCACTGAAAACTAA+AGG | + | chr4_4:79228215-79228234 | None:intergenic | 40.0% | |
| !!! | CTTTAGTTTTCAGTGCGGAT+TGG | - | chr4_4:79228213-79228232 | Msa0706250:CDS | 40.0% |
| AACAACCTAGATAGACTCCT+TGG | + | chr4_4:79228736-79228755 | None:intergenic | 40.0% | |
| ! | TGGGATTCCTTATGGATTGA+AGG | - | chr4_4:79229012-79229031 | Msa0706250:intron | 40.0% |
| !!! | CCCCATGTTGTTTTGTATTC+TGG | + | chr4_4:79229052-79229071 | None:intergenic | 40.0% |
| ! | TTCAACAGGTTGAAATCTGC+AGG | - | chr4_4:79229203-79229222 | Msa0706250:CDS | 40.0% |
| ! | TCAACAGGTTGAAATCTGCA+GGG | - | chr4_4:79229204-79229223 | Msa0706250:CDS | 40.0% |
| !! | CATTGGCTTATGATGATGTC+TGG | - | chr4_4:79229258-79229277 | Msa0706250:CDS | 40.0% |
| ! | GCTTATGATGATGTCTGGTT+TGG | - | chr4_4:79229263-79229282 | Msa0706250:CDS | 40.0% |
| !! | TATGATGATGTCTGGTTTGG+AGG | - | chr4_4:79229266-79229285 | Msa0706250:CDS | 40.0% |
| !! | TAATTGAAGAGTACCTGCTG+AGG | + | chr4_4:79229360-79229379 | None:intergenic | 40.0% |
| AAAGTGCAAGCGTTTAGGAA+GGG | + | chr4_4:79229383-79229402 | None:intergenic | 40.0% | |
| ! | AAAAGTGCAAGCGTTTAGGA+AGG | + | chr4_4:79229384-79229403 | None:intergenic | 40.0% |
| GTTTCTGAACCTATCGCAAA+TGG | + | chr4_4:79229554-79229573 | None:intergenic | 40.0% | |
| AACAACAGCACAATCAGTTG+CGG | + | chr4_4:79229801-79229820 | None:intergenic | 40.0% | |
| ! | AACTGATTGTGCTGTTGTTC+TGG | - | chr4_4:79229802-79229821 | Msa0706250:CDS | 40.0% |
| ! | GTTGTTCTGGATATTGTTCG+GGG | - | chr4_4:79229815-79229834 | Msa0706250:CDS | 40.0% |
| ! | TCTTTTGATGAGGGATCTTC+AGG | + | chr4_4:79229848-79229867 | None:intergenic | 40.0% |
| TAGTAATGTCAACCAGGAAC+GGG | + | chr4_4:79229886-79229905 | None:intergenic | 40.0% | |
| !! | ATATCTTGATGATGCCGAGA+TGG | - | chr4_4:79229919-79229938 | Msa0706250:intron | 40.0% |
| TTTATTTGCCATGACAACCC+AGG | - | chr4_4:79230065-79230084 | Msa0706250:intron | 40.0% | |
| TGTTGATGTTCTTGCGTCAA+TGG | - | chr4_4:79230089-79230108 | Msa0706250:intron | 40.0% | |
| GTTGATGTTCTTGCGTCAAT+GGG | - | chr4_4:79230090-79230109 | Msa0706250:intron | 40.0% | |
| CACAATGGATGTTGATATGC+TGG | - | chr4_4:79230176-79230195 | Msa0706250:CDS | 40.0% | |
| ACACAGGACACATTAATCTG+AGG | + | chr4_4:79230470-79230489 | None:intergenic | 40.0% | |
| CAGATTAATGTGTCCTGTGT+CGG | - | chr4_4:79230470-79230489 | Msa0706250:CDS | 40.0% | |
| AATGGTTGGGAACATACATG+CGG | - | chr4_4:79230646-79230665 | Msa0706250:intron | 40.0% | |
| !! | TTGTACCAAAAGTACCAGAG+GGG | + | chr4_4:79230725-79230744 | None:intergenic | 40.0% |
| !! | CTTGTACCAAAAGTACCAGA+GGG | + | chr4_4:79230726-79230745 | None:intergenic | 40.0% |
| !! | CTGAAAACTCTGAGGTTCTA+TGG | + | chr4_4:79230750-79230769 | None:intergenic | 40.0% |
| ! | CATAGAACCTCAGAGTTTTC+AGG | - | chr4_4:79230748-79230767 | Msa0706250:intron | 40.0% |
| TCAGAAACCTGAAAACTCTG+AGG | + | chr4_4:79230758-79230777 | None:intergenic | 40.0% | |
| TTGACACTTGCAGAAAGATC+AGG | - | chr4_4:79230875-79230894 | Msa0706250:intron | 40.0% | |
| TTTACCGTGGATGCATTCAT+TGG | - | chr4_4:79231040-79231059 | Msa0706250:intron | 40.0% | |
| TCATTGGAAATGCAACTGAC+TGG | - | chr4_4:79231056-79231075 | Msa0706250:intron | 40.0% | |
| CATTGGAAATGCAACTGACT+GGG | - | chr4_4:79231057-79231076 | Msa0706250:intron | 40.0% | |
| CTATGACTGGTAAACCAACA+AGG | + | chr4_4:79231102-79231121 | None:intergenic | 40.0% | |
| ACAATGTGATCATGGTTAGG+GGG | + | chr4_4:79231211-79231230 | None:intergenic | 40.0% | |
| TATTTCCCCTGTTTATCTGC+AGG | - | chr4_4:79231331-79231350 | Msa0706250:CDS | 40.0% | |
| TGGTCCGAATGATAAGATAC+CGG | - | chr4_4:79231424-79231443 | Msa0706250:CDS | 40.0% | |
| GCATCTATAGATGCATCATC+CGG | + | chr4_4:79231446-79231465 | None:intergenic | 40.0% | |
| !! | TTTTTGGTCCTTGAGCAACT+GGG | - | chr4_4:79231479-79231498 | Msa0706250:five_prime_UTR | 40.0% |
| TCAGAATTGAACCTGGGTCT+GGG | + | chr4_4:79226972-79226991 | None:intergenic | 45.0% | |
| TTCAGAATTGAACCTGGGTC+TGG | + | chr4_4:79226973-79226992 | None:intergenic | 45.0% | |
| ATATGCGAGAAGGGGAACAA+CGG | + | chr4_4:79227141-79227160 | None:intergenic | 45.0% | |
| TGAGGAAGGATATGCGAGAA+GGG | + | chr4_4:79227150-79227169 | None:intergenic | 45.0% | |
| GAAGAACAAAGTGGTGAGGA+AGG | + | chr4_4:79227164-79227183 | None:intergenic | 45.0% | |
| GTTGGAAGAACAAAGTGGTG+AGG | + | chr4_4:79227168-79227187 | None:intergenic | 45.0% | |
| TTGTACATTTGTCAGGGGTG+TGG | + | chr4_4:79227324-79227343 | None:intergenic | 45.0% | |
| ACCCCTGACAAATGTACAAC+AGG | - | chr4_4:79227325-79227344 | Msa0706250:CDS | 45.0% | |
| GAGGAAAGGACAATAGCCTT+TGG | + | chr4_4:79227459-79227478 | None:intergenic | 45.0% | |
| CCTAAGGAACATCTTAGGCA+GGG | + | chr4_4:79227985-79228004 | None:intergenic | 45.0% | |
| ACCTAAGGAACATCTTAGGC+AGG | + | chr4_4:79227986-79228005 | None:intergenic | 45.0% | |
| CTCCGTATCTCCGAAATAGA+AGG | + | chr4_4:79228281-79228300 | None:intergenic | 45.0% | |
| GTTCACCTAACTCAAGAACC+TGG | + | chr4_4:79228454-79228473 | None:intergenic | 45.0% | |
| GCTGATGAATTGCTTAGCCA+AGG | - | chr4_4:79228716-79228735 | Msa0706250:intron | 45.0% | |
| CTTAGCCAAGGAGTCTATCT+AGG | - | chr4_4:79228728-79228747 | Msa0706250:intron | 45.0% | |
| CAAAAGGATGCAGAAGGTTG+CGG | + | chr4_4:79228913-79228932 | None:intergenic | 45.0% | |
| ! | GCAACCTTCTGCATCCTTTT+GGG | - | chr4_4:79228912-79228931 | Msa0706250:CDS | 45.0% |
| ACATCCCAAAAGGATGCAGA+AGG | + | chr4_4:79228919-79228938 | None:intergenic | 45.0% | |
| TTCATTGAAGGGCCTCTTCA+TGG | - | chr4_4:79228992-79229011 | Msa0706250:intron | 45.0% | |
| TCATTGAAGGGCCTCTTCAT+GGG | - | chr4_4:79228993-79229012 | Msa0706250:intron | 45.0% | |
| CCATAAGGAATCCCATGAAG+AGG | + | chr4_4:79229007-79229026 | None:intergenic | 45.0% | |
| CCTCTTCATGGGATTCCTTA+TGG | - | chr4_4:79229004-79229023 | Msa0706250:intron | 45.0% | |
| ! | CAACAGGTTGAAATCTGCAG+GGG | - | chr4_4:79229205-79229224 | Msa0706250:CDS | 45.0% |
| CTCAATATTCCATGGGTTCC+TGG | + | chr4_4:79229297-79229316 | None:intergenic | 45.0% | |
| CAGGAACCCATGGAATATTG+AGG | - | chr4_4:79229295-79229314 | Msa0706250:intron | 45.0% | |
| GGAATGGTTCCATTTGCGAT+AGG | - | chr4_4:79229542-79229561 | Msa0706250:intron | 45.0% | |
| ! | ACTGCATTGCGTCCAACTTT+TGG | - | chr4_4:79229614-79229633 | Msa0706250:intron | 45.0% |
| ! | CGTCCAACTTTTGGTACTGT+TGG | - | chr4_4:79229623-79229642 | Msa0706250:intron | 45.0% |
| CGACCAACAGTACCAAAAGT+TGG | + | chr4_4:79229629-79229648 | None:intergenic | 45.0% | |
| TTTGGTACTGTTGGTCGAAC+TGG | - | chr4_4:79229632-79229651 | Msa0706250:intron | 45.0% | |
| GGGCCAAGCTTATCCTATAA+AGG | + | chr4_4:79229767-79229786 | None:intergenic | 45.0% | |
| CAGTTGCGGATCTACAGAAA+GGG | + | chr4_4:79229787-79229806 | None:intergenic | 45.0% | |
| TCAGTTGCGGATCTACAGAA+AGG | + | chr4_4:79229788-79229807 | None:intergenic | 45.0% | |
| ATCAACAACCTGGGTTGTCA+TGG | + | chr4_4:79230076-79230095 | None:intergenic | 45.0% | |
| CGCAAGAACATCAACAACCT+GGG | + | chr4_4:79230085-79230104 | None:intergenic | 45.0% | |
| ACGCAAGAACATCAACAACC+TGG | + | chr4_4:79230086-79230105 | None:intergenic | 45.0% | |
| TGTATGAAGCCCAAGATCAG+TGG | - | chr4_4:79230238-79230257 | Msa0706250:CDS | 45.0% | |
| !! | TCCAGCAGTGGACTATATAC+AGG | - | chr4_4:79230290-79230309 | Msa0706250:CDS | 45.0% |
| ACCTGTATATAGTCCACTGC+TGG | + | chr4_4:79230294-79230313 | None:intergenic | 45.0% | |
| TACGTGTAAATGTCCGACAC+AGG | + | chr4_4:79230486-79230505 | None:intergenic | 45.0% | |
| CATGACACTAACATCGAGAC+TGG | + | chr4_4:79230546-79230565 | None:intergenic | 45.0% | |
| GAACAGATAGGCTGCTATCT+GGG | + | chr4_4:79230615-79230634 | None:intergenic | 45.0% | |
| TACCTCGCATACGAACAGAT+AGG | + | chr4_4:79230627-79230646 | None:intergenic | 45.0% | |
| TCTGTTCGTATGCGAGGTAA+TGG | - | chr4_4:79230628-79230647 | Msa0706250:intron | 45.0% | |
| ! | TTCGTATGCGAGGTAATGGT+TGG | - | chr4_4:79230632-79230651 | Msa0706250:intron | 45.0% |
| ! | TCGTATGCGAGGTAATGGTT+GGG | - | chr4_4:79230633-79230652 | Msa0706250:intron | 45.0% |
| !! | CCTTGTACCAAAAGTACCAG+AGG | + | chr4_4:79230727-79230746 | None:intergenic | 45.0% |
| ! | CCTCTGGTACTTTTGGTACA+AGG | - | chr4_4:79230724-79230743 | Msa0706250:intron | 45.0% |
| ! | GACTGGGAGAAAGTATGCAT+AGG | - | chr4_4:79231073-79231092 | Msa0706250:intron | 45.0% |
| GTATGCATAGGCAACCTTGT+TGG | - | chr4_4:79231085-79231104 | Msa0706250:intron | 45.0% | |
| ATCTCTGATCTACCATCTGG+TGG | - | chr4_4:79231145-79231164 | Msa0706250:intron | 45.0% | |
| ! | CGGCCGCCTATTAATGATTT+TGG | - | chr4_4:79231404-79231423 | Msa0706250:CDS | 45.0% |
| TCTATAGATGCTTACCACCC+AGG | - | chr4_4:79231455-79231474 | Msa0706250:exon | 45.0% | |
| CTATAGATGCTTACCACCCA+GGG | - | chr4_4:79231456-79231475 | Msa0706250:exon | 45.0% | |
| !!! | GTTTTTGGTCCTTGAGCAAC+TGG | - | chr4_4:79231478-79231497 | Msa0706250:five_prime_UTR | 45.0% |
| !!! | TTTAGTTTTAAAATAAATTT+TGG | - | chr4_4:79228967-79228986 | Msa0706250:intron | 5.0% |
| AAGAAAGAACTCCCAGACCC+AGG | - | chr4_4:79226958-79226977 | Msa0706250:exon | 50.0% | |
| GAGGAAGGATATGCGAGAAG+GGG | + | chr4_4:79227149-79227168 | None:intergenic | 50.0% | |
| GTGAGGAAGGATATGCGAGA+AGG | + | chr4_4:79227151-79227170 | None:intergenic | 50.0% | |
| CCCTGCCTAAGATGTTCCTT+AGG | - | chr4_4:79227982-79228001 | Msa0706250:intron | 50.0% | |
| !! | CTTTTGGTTGCGCAGTGAAC+TGG | + | chr4_4:79228248-79228267 | None:intergenic | 50.0% |
| CAGTTCACTGCGCAACCAAA+AGG | - | chr4_4:79228246-79228265 | Msa0706250:CDS | 50.0% | |
| ! | CGCAACCTTCTGCATCCTTT+TGG | - | chr4_4:79228911-79228930 | Msa0706250:CDS | 50.0% |
| ! | TTTTCTACGGGTTCCTCTGC+TGG | - | chr4_4:79229320-79229339 | Msa0706250:intron | 50.0% |
| CACGCACGCCTCACATATAA+AGG | + | chr4_4:79229490-79229509 | None:intergenic | 50.0% | |
| GCGATAGGTTCAGAAACAGC+TGG | - | chr4_4:79229557-79229576 | Msa0706250:intron | 50.0% | |
| TCGAGCTGCAGGGTAAGTTA+TGG | + | chr4_4:79229585-79229604 | None:intergenic | 50.0% | |
| !! | TCTTGATGATGCCGAGATGG+AGG | - | chr4_4:79229922-79229941 | Msa0706250:intron | 50.0% |
| ATGCCGAGATGGAGGTTTGT+CGG | - | chr4_4:79229930-79229949 | Msa0706250:intron | 50.0% | |
| TGCGTCAATGGGTGTCAAGA+TGG | - | chr4_4:79230101-79230120 | Msa0706250:intron | 50.0% | |
| !! | TGCTGGCTCACTTTGATCAG+TGG | - | chr4_4:79230193-79230212 | Msa0706250:CDS | 50.0% |
| TTTGATCAGTGGCAGCGATC+AGG | - | chr4_4:79230204-79230223 | Msa0706250:CDS | 50.0% | |
| TTGATCAGTGGCAGCGATCA+GGG | - | chr4_4:79230205-79230224 | Msa0706250:CDS | 50.0% | |
| TTCAGTGGGCCACTGATCTT+GGG | + | chr4_4:79230250-79230269 | None:intergenic | 50.0% | |
| AGTCCACTGCTGGAACTAAG+CGG | + | chr4_4:79230284-79230303 | None:intergenic | 50.0% | |
| CGAACAGATAGGCTGCTATC+TGG | + | chr4_4:79230616-79230635 | None:intergenic | 50.0% | |
| AGCCTATCTGTTCGTATGCG+AGG | - | chr4_4:79230622-79230641 | Msa0706250:intron | 50.0% | |
| !! | TGTTGATTTAGGCTCCCCTC+TGG | - | chr4_4:79230708-79230727 | Msa0706250:intron | 50.0% |
| CCTGTTGGCACTACTATGAC+TGG | + | chr4_4:79231115-79231134 | None:intergenic | 50.0% | |
| CCAGTCATAGTAGTGCCAAC+AGG | - | chr4_4:79231112-79231131 | Msa0706250:intron | 50.0% | |
| AGAAGAACCACCATCACCAC+CGG | - | chr4_4:79231175-79231194 | Msa0706250:intron | 50.0% | |
| !! | ATAAATGCCGGTGGTGATGG+TGG | + | chr4_4:79231185-79231204 | None:intergenic | 50.0% |
| AGCATAAATGCCGGTGGTGA+TGG | + | chr4_4:79231188-79231207 | None:intergenic | 50.0% | |
| ! | GTTAGGGGGAGCATAAATGC+CGG | + | chr4_4:79231197-79231216 | None:intergenic | 50.0% |
| CAGAGCCTGCAGATAAACAG+GGG | + | chr4_4:79231339-79231358 | None:intergenic | 50.0% | |
| CCAGAGCCTGCAGATAAACA+GGG | + | chr4_4:79231340-79231359 | None:intergenic | 50.0% | |
| ! | TGCTTACCACCCAGGGTTTT+TGG | - | chr4_4:79231463-79231482 | Msa0706250:exon | 50.0% |
| GCTCAAGGACCAAAAACCCT+GGG | + | chr4_4:79231475-79231494 | None:intergenic | 50.0% | |
| TGCTCAAGGACCAAAAACCC+TGG | + | chr4_4:79231476-79231495 | None:intergenic | 50.0% | |
| CCTTGAGCAACTGGGTGAAA+CGG | - | chr4_4:79231487-79231506 | Msa0706250:five_prime_UTR | 50.0% | |
| TCATCACGGTCCACCTATCA+TGG | + | chr4_4:79231646-79231665 | None:intergenic | 50.0% | |
| GCAGTTTCTGAACCGACACG+TGG | - | chr4_4:79227056-79227075 | Msa0706250:CDS | 55.0% | |
| TATCTCCTGGAGTGAACGCC+AGG | - | chr4_4:79228627-79228646 | Msa0706250:CDS | 55.0% | |
| TTGTACCTGGCGTTCACTCC+AGG | + | chr4_4:79228635-79228654 | None:intergenic | 55.0% | |
| !! | TCTGGTTTGGAGGCAGAACC+AGG | - | chr4_4:79229276-79229295 | Msa0706250:intron | 55.0% |
| ! | CTGCTGAGGTACTTGCTGCA+GGG | + | chr4_4:79229346-79229365 | None:intergenic | 55.0% |
| ACTTACCCTGCAGCTCGATG+CGG | - | chr4_4:79229587-79229606 | Msa0706250:intron | 55.0% | |
| TAACACCGCATCGAGCTGCA+GGG | + | chr4_4:79229595-79229614 | None:intergenic | 55.0% | |
| CCAGGAACGGGTCATCAATG+AGG | + | chr4_4:79229874-79229893 | None:intergenic | 55.0% | |
| ! | CCTCATTGATGACCCGTTCC+TGG | - | chr4_4:79229871-79229890 | Msa0706250:intron | 55.0% |
| CAGCCGACAAACCTCCATCT+CGG | + | chr4_4:79229936-79229955 | None:intergenic | 55.0% | |
| TGATCAGTGGCAGCGATCAG+GGG | - | chr4_4:79230206-79230225 | Msa0706250:CDS | 55.0% | |
| GTTCAGTGGGCCACTGATCT+TGG | + | chr4_4:79230251-79230270 | None:intergenic | 55.0% | |
| GTCCACTGCTGGAACTAAGC+GGG | + | chr4_4:79230283-79230302 | None:intergenic | 55.0% | |
| ! | AGGCTCCCCTCTGGTACTTT+TGG | - | chr4_4:79230717-79230736 | Msa0706250:intron | 55.0% |
| GCATACAGGCACAACGAGCA+CGG | - | chr4_4:79230987-79231006 | Msa0706250:intron | 55.0% | |
| CATACAGGCACAACGAGCAC+GGG | - | chr4_4:79230988-79231007 | Msa0706250:intron | 55.0% | |
| ATACAGGCACAACGAGCACG+GGG | - | chr4_4:79230989-79231008 | Msa0706250:intron | 55.0% | |
| CTTCTTCTGCTGCCACCAGA+TGG | + | chr4_4:79231160-79231179 | None:intergenic | 55.0% | |
| CCCTGTTTATCTGCAGGCTC+TGG | - | chr4_4:79231337-79231356 | Msa0706250:CDS | 55.0% | |
| GCCAGAGCCTGCAGATAAAC+AGG | + | chr4_4:79231341-79231360 | None:intergenic | 55.0% | |
| ! | TTATCTGCAGGCTCTGGCGT+TGG | - | chr4_4:79231343-79231362 | Msa0706250:CDS | 55.0% |
| TAATAGGCGGCCGCTGTATG+TGG | + | chr4_4:79231397-79231416 | None:intergenic | 55.0% | |
| CAAGGACCAAAAACCCTGGG+TGG | + | chr4_4:79231472-79231491 | None:intergenic | 55.0% | |
| CCGTTTCACCCAGTTGCTCA+AGG | + | chr4_4:79231490-79231509 | None:intergenic | 55.0% | |
| TCACGGTCCACCTATCATGG+CGG | + | chr4_4:79231643-79231662 | None:intergenic | 55.0% | |
| TCTGAACCGACACGTGGCAG+AGG | - | chr4_4:79227062-79227081 | Msa0706250:CDS | 60.0% | |
| GAGGCAGAACCAGGAACCCA+TGG | - | chr4_4:79229285-79229304 | Msa0706250:intron | 60.0% | |
| ! | CCTGCTGAGGTACTTGCTGC+AGG | + | chr4_4:79229347-79229366 | None:intergenic | 60.0% |
| CCTGCAGCAAGTACCTCAGC+AGG | - | chr4_4:79229344-79229363 | Msa0706250:intron | 60.0% | |
| GTAACACCGCATCGAGCTGC+AGG | + | chr4_4:79229596-79229615 | None:intergenic | 60.0% | |
| CGGGCACGGTGTAGTTCAGT+GGG | + | chr4_4:79230264-79230283 | None:intergenic | 60.0% | |
| CTGCTGGAACTAAGCGGGCA+CGG | + | chr4_4:79230278-79230297 | None:intergenic | 60.0% | |
| TGCCCGCTTAGTTCCAGCAG+TGG | - | chr4_4:79230278-79230297 | Msa0706250:CDS | 60.0% | |
| ! | AGGGGGAGCATAAATGCCGG+TGG | + | chr4_4:79231194-79231213 | None:intergenic | 60.0% |
| CAACCACGGACCGCCATGAT+AGG | - | chr4_4:79231630-79231649 | Msa0706250:intron | 60.0% | |
| GAACCGACACGTGGCAGAGG+TGG | - | chr4_4:79227065-79227084 | Msa0706250:CDS | 65.0% | |
| CCACCACCTCTGCCACGTGT+CGG | + | chr4_4:79227071-79227090 | None:intergenic | 65.0% | |
| ! | ACTTGCTGCAGGGCCAGCAG+AGG | + | chr4_4:79229336-79229355 | None:intergenic | 65.0% |
| TCAGTGGCAGCGATCAGGGG+AGG | - | chr4_4:79230209-79230228 | Msa0706250:CDS | 65.0% | |
| GCGGGCACGGTGTAGTTCAG+TGG | + | chr4_4:79230265-79230284 | None:intergenic | 65.0% | |
| AGGCACAACGAGCACGGGGA+AGG | - | chr4_4:79230993-79231012 | Msa0706250:intron | 65.0% | |
| !! | GCAGGCTCTGGCGTTGGCAA+TGG | - | chr4_4:79231349-79231368 | Msa0706250:CDS | 65.0% |
| CCACCTATCATGGCGGTCCG+TGG | + | chr4_4:79231636-79231655 | None:intergenic | 65.0% | |
| CCACGGACCGCCATGATAGG+TGG | - | chr4_4:79231633-79231652 | Msa0706250:intron | 65.0% | |
| CCGACACGTGGCAGAGGTGG+TGG | - | chr4_4:79227068-79227087 | Msa0706250:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 79226786 | 79231713 | 79226786 | ID=Msa0706250;Name=Msa0706250 |
| chr4_4 | mRNA | 79226786 | 79231713 | 79226786 | ID=Msa0706250-mRNA-1;Parent=Msa0706250;Name=Msa0706250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=124|0.91|0.92|1|0.91|0.84|13|184|621 |
| chr4_4 | exon | 79226786 | 79227146 | 79226786 | ID=Msa0706250-mRNA-1:exon:25494;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79227271 | 79227504 | 79227271 | ID=Msa0706250-mRNA-1:exon:25493;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79228188 | 79228412 | 79228188 | ID=Msa0706250-mRNA-1:exon:25492;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79228556 | 79228726 | 79228556 | ID=Msa0706250-mRNA-1:exon:25491;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79228820 | 79228956 | 79228820 | ID=Msa0706250-mRNA-1:exon:25490;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79229134 | 79229288 | 79229134 | ID=Msa0706250-mRNA-1:exon:25489;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79229422 | 79229497 | 79229422 | ID=Msa0706250-mRNA-1:exon:25488;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79229750 | 79229850 | 79229750 | ID=Msa0706250-mRNA-1:exon:25487;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79229962 | 79230044 | 79229962 | ID=Msa0706250-mRNA-1:exon:25486;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79230165 | 79230389 | 79230165 | ID=Msa0706250-mRNA-1:exon:25485;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79230461 | 79230562 | 79230461 | ID=Msa0706250-mRNA-1:exon:25484;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79231294 | 79231543 | 79231294 | ID=Msa0706250-mRNA-1:exon:25483;Parent=Msa0706250-mRNA-1 |
| chr4_4 | exon | 79231660 | 79231713 | 79231660 | ID=Msa0706250-mRNA-1:exon:25482;Parent=Msa0706250-mRNA-1 |
| chr4_4 | five_prime_UTR | 79231660 | 79231713 | 79231660 | ID=Msa0706250-mRNA-1:five_prime_utr;Parent=Msa0706250-mRNA-1 |
| chr4_4 | five_prime_UTR | 79231474 | 79231543 | 79231474 | ID=Msa0706250-mRNA-1:five_prime_utr;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79231294 | 79231473 | 79231294 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79230461 | 79230562 | 79230461 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79230165 | 79230389 | 79230165 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79229962 | 79230044 | 79229962 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79229750 | 79229850 | 79229750 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79229422 | 79229497 | 79229422 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79229134 | 79229288 | 79229134 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79228820 | 79228956 | 79228820 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79228556 | 79228726 | 79228556 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79228188 | 79228412 | 79228188 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79227271 | 79227504 | 79227271 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | CDS | 79226970 | 79227146 | 79226970 | ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1 |
| chr4_4 | three_prime_UTR | 79226786 | 79226969 | 79226786 | ID=Msa0706250-mRNA-1:three_prime_utr;Parent=Msa0706250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
