AlfalfaGEDB | Msa0706250

M. sativa cultivar zhongmu-4 / Msa0706250

KEGG: -
GO: -
PFAM: PF01425.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706250	XP_003630443.2	92.258	620	25	2	1	604	1	613	0.0	1162

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706250	sp\|B2V855\|GATA_SULSY	27.033	492	270	14	169	584	7	485	2.16e-45	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706250	G7LGJ1	92.258	620	25	2	1	604	1	613	0.0	1162

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0188560	Msa0706250	0.824021	1.011222e-53	-8.615850e-47
Msa0230920	Msa0706250	0.831923	1.267383e-55	-8.615850e-47
Msa0235080	Msa0706250	0.802585	5.230874e-49	-8.615850e-47
Msa0319710	Msa0706250	-0.813717	2.222189e-51	-8.615850e-47
Msa0336430	Msa0706250	0.818557	1.842552e-52	-8.615850e-47
Msa0336520	Msa0706250	0.814889	1.224025e-51	-8.615850e-47
Msa0576840	Msa0706250	0.964103	6.599252e-123	-8.615850e-47
Msa0577020	Msa0706250	0.804764	1.846903e-49	-8.615850e-47
Msa0619760	Msa0706250	0.975040	3.147707e-139	-8.615850e-47
Msa0705810	Msa0706250	-0.804518	2.079178e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706250	MtrunA17_Chr8g0385461	92.258	620	25	2	1	604	1	613	0.0	1162
Msa0706250	MtrunA17_Chr8g0377691	33.058	242	133	7	169	383	40	279	1.01e-27	117
Msa0706250	MtrunA17_Chr8g0377701	34.298	242	130	8	169	383	41	280	8.38e-27	114
Msa0706250	MtrunA17_Chr8g0377651	32.400	250	140	7	161	383	32	279	1.62e-25	110
Msa0706250	MtrunA17_Chr4g0037521	33.333	237	132	5	169	380	34	269	2.18e-25	110
Msa0706250	MtrunA17_Chr8g0377681	32.000	250	141	7	161	383	29	276	5.82e-25	108
Msa0706250	MtrunA17_Chr8g0377641	31.557	244	138	7	161	377	29	270	3.59e-24	106
Msa0706250	MtrunA17_Chr3g0097801	31.197	234	141	4	170	383	43	276	1.83e-19	92.0
Msa0706250	MtrunA17_Chr3g0130801	23.541	497	295	17	153	582	184	662	2.08e-18	89.4
Msa0706250	MtrunA17_Chr8g0384851	23.848	499	296	17	154	584	119	601	5.18e-16	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0706250	AT5G07360.1	70.849	542	142	1	70	595	105	646	0.0	819
Msa0706250	AT5G07360.3	70.849	542	142	1	70	595	105	646	0.0	819
Msa0706250	AT5G07360.2	69.557	542	142	2	70	595	105	639	0.0	797
Msa0706250	AT4G34880.2	33.333	231	128	5	180	384	55	285	2.91e-23	104
Msa0706250	AT3G25660.1	30.396	227	128	4	181	383	57	277	6.91e-20	94.0
Msa0706250	AT5G64440.1	30.319	188	107	3	215	380	179	364	1.42e-15	80.5
Msa0706250	AT1G08980.1	29.891	184	104	4	233	392	28	210	5.88e-14	74.7
Msa0706250	AT5G09420.1	31.056	161	87	5	233	372	71	228	4.34e-11	66.2

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Find 180 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCTCAATATTCCAT+GGG	0.567370	4_4:+79229176	None:intergenic
AAAGCTTGTTTCTGGATCAT+TGG	0.387846	4_4:-79229236	Msa0706250:CDS
AACAACAGCACAATCAGTTG+CGG	0.636172	4_4:+79228679	None:intergenic
AACAACCTAGATAGACTCCT+TGG	0.539798	4_4:+79229744	None:intergenic
AACTAAACAAATTACTTCGC+AGG	0.517999	4_4:-79229996	Msa0706250:CDS
AACTCTGAACTTAACGAGAG+CGG	0.655935	4_4:-79231486	Msa0706250:five_prime_UTR
AACTGATTGTGCTGTTGTTC+TGG	0.393696	4_4:-79228675	Msa0706250:CDS
AAGAAAGAACTCCCAGACCC+AGG	0.623595	4_4:-79231519	Msa0706250:five_prime_UTR
AATATCTCTGATCTACCATC+TGG	0.539127	4_4:-79227335	Msa0706250:CDS
AATCTAATGGCTATAAGTTG+TGG	0.560486	4_4:+79226810	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATGATAAGATCATACAGT+AGG	+	chr4_4:79226837-79226856	None:intergenic	30.0%
ACAAGTAGAATTACCATGAT+CGG	+	chr4_4:79227200-79227219	None:intergenic	30.0%
TTGTTTGAGTGAATTACCAA+AGG	-	chr4_4:79227440-79227459	Msa0706250:CDS	30.0%
ACTAAACCCTATGTTAGATT+TGG	-	chr4_4:79227505-79227524	Msa0706250:intron	30.0%
GAACCTGGTTAAAAACAAAT+AGG	+	chr4_4:79228439-79228458	None:intergenic	30.0%
AACTAAACAAATTACTTCGC+AGG	-	chr4_4:79228481-79228500	Msa0706250:intron	30.0%
AGCTTACACAAATATTCTTG+CGG	-	chr4_4:79228504-79228523	Msa0706250:intron	30.0%
GGAGAATGAAAAAGTAGTAT+CGG	-	chr4_4:79228525-79228544	Msa0706250:intron	30.0%
AGTAACTTATACAGAAGAAC+TGG	-	chr4_4:79228673-79228692	Msa0706250:CDS	30.0%
TGTTCATAACTTTACACTCT+AGG	+	chr4_4:79228766-79228785	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	79226786	79231713	79226786	ID=Msa0706250;Name=Msa0706250
chr4_4	mRNA	79226786	79231713	79226786	ID=Msa0706250-mRNA-1;Parent=Msa0706250;Name=Msa0706250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=124\|0.91\|0.92\|1\|0.91\|0.84\|13\|184\|621
chr4_4	exon	79226786	79227146	79226786	ID=Msa0706250-mRNA-1:exon:25494;Parent=Msa0706250-mRNA-1
chr4_4	exon	79227271	79227504	79227271	ID=Msa0706250-mRNA-1:exon:25493;Parent=Msa0706250-mRNA-1
chr4_4	exon	79228188	79228412	79228188	ID=Msa0706250-mRNA-1:exon:25492;Parent=Msa0706250-mRNA-1
chr4_4	exon	79228556	79228726	79228556	ID=Msa0706250-mRNA-1:exon:25491;Parent=Msa0706250-mRNA-1
chr4_4	exon	79228820	79228956	79228820	ID=Msa0706250-mRNA-1:exon:25490;Parent=Msa0706250-mRNA-1
chr4_4	exon	79229134	79229288	79229134	ID=Msa0706250-mRNA-1:exon:25489;Parent=Msa0706250-mRNA-1
chr4_4	exon	79229422	79229497	79229422	ID=Msa0706250-mRNA-1:exon:25488;Parent=Msa0706250-mRNA-1
chr4_4	exon	79229750	79229850	79229750	ID=Msa0706250-mRNA-1:exon:25487;Parent=Msa0706250-mRNA-1
chr4_4	exon	79229962	79230044	79229962	ID=Msa0706250-mRNA-1:exon:25486;Parent=Msa0706250-mRNA-1
chr4_4	exon	79230165	79230389	79230165	ID=Msa0706250-mRNA-1:exon:25485;Parent=Msa0706250-mRNA-1
chr4_4	exon	79230461	79230562	79230461	ID=Msa0706250-mRNA-1:exon:25484;Parent=Msa0706250-mRNA-1
chr4_4	exon	79231294	79231543	79231294	ID=Msa0706250-mRNA-1:exon:25483;Parent=Msa0706250-mRNA-1
chr4_4	exon	79231660	79231713	79231660	ID=Msa0706250-mRNA-1:exon:25482;Parent=Msa0706250-mRNA-1
chr4_4	five_prime_UTR	79231660	79231713	79231660	ID=Msa0706250-mRNA-1:five_prime_utr;Parent=Msa0706250-mRNA-1
chr4_4	five_prime_UTR	79231474	79231543	79231474	ID=Msa0706250-mRNA-1:five_prime_utr;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79231294	79231473	79231294	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79230461	79230562	79230461	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79230165	79230389	79230165	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79229962	79230044	79229962	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79229750	79229850	79229750	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79229422	79229497	79229422	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79229134	79229288	79229134	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79228820	79228956	79228820	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79228556	79228726	79228556	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79228188	79228412	79228188	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79227271	79227504	79227271	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	CDS	79226970	79227146	79226970	ID=Msa0706250-mRNA-1:cds;Parent=Msa0706250-mRNA-1
chr4_4	three_prime_UTR	79226786	79226969	79226786	ID=Msa0706250-mRNA-1:three_prime_utr;Parent=Msa0706250-mRNA-1

Gene Sequence

>Msa0706250

ATGTTGAAGAACAACAAGTGTCCTGTAAATGCAGTTTCTGAACCGACACGTGGCAGAGGTGGTGGCACTTACAAATTTCACTTTTCTGTGATTTGTTGCTATCTTCTCTTCTCCGTTGTTCCCCTTCTCGCATATCCTTCCTCACCACTTTGTTCTTCCAACAAAAACCAACCGATCATGGGAAGTATGAAGCAAAATCAATTTTCAGATAAGGAATGTAGTGTTCCCTGCCTAAGATGTTCCTTAGGTTTACTTGATGCCAACTTCTTCAAGGATGATCAGATTGACGAGATTGCTAAGGGTGTAAATGAGTTAAATGTTCCAATTATAAAAGCCAATAGAGAACTTGTAGCTTCTAAGAATGGAGGGCTGCAATATCCATCACCTTTAGTTTTCAGTGCGGATTGGGACTATAAACCAGTTCACTGCGCAACCAAAAGGTTCATATATCCTTCTATTTCGGAGATACGGAGACCAGAATCTGAAGAAGATATTGCTTTTTTGACTGTTCTTGAGTTAGGTGAACTCATCAAAACTAAACAAATTACTTCGCAGGAGCTTACACAAATATTCTTGCGGAGAATGAAAAAGTACAATCCTATTCTTGAAGCTGTAGTAACTTATACAGAAGAACTGGCAAGCAAGCAAGCAAAAGAAGCTGATGAATTGCTTAGCCAAGGAGTCTATCTAGGGCCTCTTCATGGGATTCCTTATGGATTGAAGGACATAATATCAGTGCCAGAATACAAAACAACATGGGGATCAAAGTTGAAATCTGCAGGGGCTGTTCTTATTGCAAAGCTTGTTTCTGGATCATTGGCTTATGATGATGTCTGGTTTGGAGGCAGAACCAGGAACCCATGGAATATTGAGGAATTTTCTACGGGTTCCTCTGCTGGCCCTGCAGCAAGTACCTCAGCAGGAATGGTTCCATTTGCGATAGGTTCAGAAACAGCTGGATCCATAACTTACCCTGCAGCTCGATGCGGTGTTACTGCATTGCGTCCAACTTTTGGTACTGTTGGTCGAACTGGTGTAATGAGCATATCAGAAAGCTTGGATAAGCTTGGCCCTTTCTGTAGATCCGCAACTGATTGTGCTGTTGTTCTGGATATTGTTCGGGGAAGAGATCCTGAAGATCCCTCATCAAAAGATATCCTCATTGATGACCCGTTCCTGGTTGACATTACTAAGTTGACTGTTGGATATCTTGATGATGCCGAGATGGAGGTTGTTGATGTTCTTGCGTCAATGGGTGTCAAGATGGTTCCTTTCAAACTGAATTACACAGTTGATTCTGTTCAAGGTATATTAAATTTCACAATGGATGTTGATATGCTGGCTCACTTTGATCAGTGGCAGCGATCAGGGGAGGATAATTTGTATGAAGCCCAAGATCAGTGGCCCACTGAACTACACCGTGCCCGCTTAGTTCCAGCAGTGGACTATATACAGGCACAACGAGCACGGGGAAGGCTAATCAAAGAAATAAGAGAGTCTTTTACCGTGGATGCATTCATTGGAAATGCAACTGACTGGGAGAAAGTATGCATAGGCAACCTTGTTGGTTTACCAGTCATAGTAGTGCCAACAGGATTTACTAATATCTCTGATCTACCATCTGGTGGCAGCAGAAGAAGAACCACCATCACCACCGGCATTTATGCTCCCCCTAACCATGATCACATTGCTCTGGCGTTGGCAATGGCATATCAAGCAGTTACTAATCACCACATACAGCGGCCGCCTATTAATGATTTTGGTCCGAATGATAAGATACCGGATGATGCATCTATAGATGCTTACCACCCAGGGTTTTTGGTCCTTGAGCAACTGGGTGAAACGGCTTCAGCATCAGCGCACTGA

Protein sequence

>Msa0706250

MLKNNKCPVNAVSEPTRGRGGGTYKFHFSVICCYLLFSVVPLLAYPSSPLCSSNKNQPIMGSMKQNQFSDKECSVPCLRCSLGLLDANFFKDDQIDEIAKGVNELNVPIIKANRELVASKNGGLQYPSPLVFSADWDYKPVHCATKRFIYPSISEIRRPESEEDIAFLTVLELGELIKTKQITSQELTQIFLRRMKKYNPILEAVVTYTEELASKQAKEADELLSQGVYLGPLHGIPYGLKDIISVPEYKTTWGSKLKSAGAVLIAKLVSGSLAYDDVWFGGRTRNPWNIEEFSTGSSAGPAASTSAGMVPFAIGSETAGSITYPAARCGVTALRPTFGTVGRTGVMSISESLDKLGPFCRSATDCAVVLDIVRGRDPEDPSSKDILIDDPFLVDITKLTVGYLDDAEMEVVDVLASMGVKMVPFKLNYTVDSVQGILNFTMDVDMLAHFDQWQRSGEDNLYEAQDQWPTELHRARLVPAVDYIQAQRARGRLIKEIRESFTVDAFIGNATDWEKVCIGNLVGLPVIVVPTGFTNISDLPSGGSRRRTTITTGIYAPPNHDHIALALAMAYQAVTNHHIQRPPINDFGPNDKIPDDASIDAYHPGFLVLEQLGETASASAH*