Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577160 | XP_039685256.1 | 98.256 | 344 | 6 | 0 | 1 | 344 | 1 | 344 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577160 | sp|A2RVJ8|HIT4_ARATH | 66.181 | 343 | 105 | 2 | 2 | 344 | 101 | 432 | 1.18e-164 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577160 | A0A396GRK1 | 98.256 | 344 | 6 | 0 | 1 | 344 | 1 | 344 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0577150 | Msa0577160 | 0.924575 | 5.863793e-90 | -8.615850e-47 |
| Msa0577160 | Msa0644530 | 0.803903 | 2.791704e-49 | -8.615850e-47 |
| Msa0577160 | Msa0704770 | 0.894411 | 2.528954e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577160 | MtrunA17_Chr8g0382951 | 98.256 | 344 | 6 | 0 | 1 | 344 | 1 | 344 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577160 | AT5G10010.1 | 66.181 | 343 | 105 | 2 | 2 | 344 | 101 | 432 | 1.20e-165 | 471 |
| Msa0577160 | AT5G64910.4 | 60.923 | 325 | 123 | 4 | 23 | 344 | 149 | 472 | 9.93e-125 | 368 |
| Msa0577160 | AT5G64910.3 | 60.923 | 325 | 123 | 4 | 23 | 344 | 149 | 472 | 9.93e-125 | 368 |
| Msa0577160 | AT5G64910.5 | 60.923 | 325 | 123 | 4 | 23 | 344 | 149 | 472 | 9.93e-125 | 368 |
| Msa0577160 | AT5G64910.1 | 59.677 | 310 | 122 | 3 | 23 | 330 | 149 | 457 | 7.05e-115 | 343 |
| Msa0577160 | AT5G64910.2 | 59.355 | 310 | 120 | 4 | 23 | 330 | 149 | 454 | 3.40e-112 | 336 |
Find 105 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCACCATCTGATAAAAT+TGG | 0.157161 | 4_1:+81346353 | Msa0577160:CDS |
| GGCTCAACTGGATATATTAT+TGG | 0.161747 | 4_1:-81350912 | None:intergenic |
| TCAAATTCATCTTCCTTAAA+TGG | 0.186723 | 4_1:-81347721 | None:intergenic |
| TCAAATTCATCTTCCTTAAA+TGG | 0.186723 | 4_1:-81350873 | None:intergenic |
| CTTCGAAGATAAGCGTAATT+TGG | 0.193911 | 4_1:+81345014 | Msa0577160:CDS |
| CGCTTATCTTCGAAGTATTC+AGG | 0.208544 | 4_1:-81345006 | None:intergenic |
| GGAAAGAAGGTTTACCTATT+TGG | 0.212336 | 4_1:+81345697 | Msa0577160:CDS |
| TCCTATGAAGCAAATGAAAA+TGG | 0.241093 | 4_1:+81346412 | Msa0577160:CDS |
| GACACGCTCTTACATTTAAA+AGG | 0.263703 | 4_1:-81344720 | None:intergenic |
| AGATTTCTATCAGCCATTTA+AGG | 0.268276 | 4_1:+81347708 | Msa0577160:intron |
| CTTACTGGCTTTGGCTCAAC+TGG | 0.294060 | 4_1:-81350924 | None:intergenic |
| TCTTTAATCTATCCAACTTC+AGG | 0.314948 | 4_1:-81347536 | None:intergenic |
| TAAATCATAATTACCGGCTT+TGG | 0.319009 | 4_1:-81347781 | None:intergenic |
| GGCTCAACTGGATATATTAT+CGG | 0.334796 | 4_1:-81347760 | None:intergenic |
| GAAGTATTCAGGTTCGGATT+GGG | 0.348830 | 4_1:-81344995 | None:intergenic |
| TAAATGATACTTACTGGCTT+TGG | 0.353260 | 4_1:-81350933 | None:intergenic |
| TGCAGTCTCCATTCATAAAC+AGG | 0.360207 | 4_1:+81349059 | Msa0577160:intron |
| AATATCTTTACTTACCTTGA+AGG | 0.363364 | 4_1:-81348399 | None:intergenic |
| GAAGCAACAGGTTGGGAATC+AGG | 0.366089 | 4_1:-81344910 | None:intergenic |
| ATTACCGGCTTTGGCTCAAC+TGG | 0.372230 | 4_1:-81347772 | None:intergenic |
| CACCAAAAGTACCTCTCTAT+TGG | 0.385186 | 4_1:-81348537 | None:intergenic |
| GTTGTCGTTTGCAGCTCAAC+TGG | 0.393426 | 4_1:+81345841 | Msa0577160:intron |
| TTCCACCATCTGATAAAATT+GGG | 0.396244 | 4_1:+81346354 | Msa0577160:CDS |
| ATGGTGTTTGCGTTCGAATT+CGG | 0.399450 | 4_1:-81344835 | None:intergenic |
| CCGTAATACCTGTTTATGAA+TGG | 0.401773 | 4_1:-81349067 | None:intergenic |
| TACGCTCGGTGCAACCAAAT+AGG | 0.402505 | 4_1:-81345711 | None:intergenic |
| CGAAGTATTCAGGTTCGGAT+TGG | 0.407077 | 4_1:-81344996 | None:intergenic |
| ATTTGTCAGGGAAAAGGTTC+GGG | 0.419026 | 4_1:+81348502 | Msa0577160:CDS |
| CAACAAACCTCAGTGCCAAC+AGG | 0.419531 | 4_1:-81345393 | None:intergenic |
| TCTTCTTATCGATTTGAATC+CGG | 0.420096 | 4_1:+81344743 | Msa0577160:five_prime_UTR |
| GTAATATCAGTGGGACCAAT+TGG | 0.421390 | 4_1:+81345489 | Msa0577160:intron |
| AGGTTCGGATTGGGGTTTAG+AGG | 0.423673 | 4_1:-81344986 | None:intergenic |
| ATCTTCGAAGTATTCAGGTT+CGG | 0.427533 | 4_1:-81345001 | None:intergenic |
| TTGGGAATCTTCGGTGTGCT+TGG | 0.428739 | 4_1:-81344887 | None:intergenic |
| ACCTGATGTGTCAGGTGTTA+AGG | 0.432564 | 4_1:+81348737 | Msa0577160:CDS |
| GGAATCAGGTTGGGAATCTT+CGG | 0.433336 | 4_1:-81344896 | None:intergenic |
| TCTTCCTTTAGGAATTTGTC+AGG | 0.433502 | 4_1:+81351420 | Msa0577160:intron |
| GAAGAGGGTGGCCTCTTGTA+TGG | 0.433536 | 4_1:+81345676 | Msa0577160:CDS |
| TCTTTCTTTAGGAATTTGTC+AGG | 0.440455 | 4_1:+81348489 | Msa0577160:intron |
| AGGTCTTCTGTGAATTTGAT+TGG | 0.443236 | 4_1:+81347913 | Msa0577160:intron |
| GAGGCGTTTAGCTTTAGGTT+TGG | 0.448003 | 4_1:-81344959 | None:intergenic |
| AATTTGTCAGGGAAAAGGTT+CGG | 0.448510 | 4_1:+81348501 | Msa0577160:CDS |
| TTAGGAATTTGTCAGGGAAA+AGG | 0.455764 | 4_1:+81348496 | Msa0577160:intron |
| AGCACCTTTCCTCATTGTGA+TGG | 0.464290 | 4_1:-81344854 | None:intergenic |
| TTTGATACACAGCATCCAAT+TGG | 0.469259 | 4_1:-81345504 | None:intergenic |
| TGCTTTGAAACACCTGAAGT+TGG | 0.469556 | 4_1:+81347524 | Msa0577160:CDS |
| GAGCTTACCGCTACAACAAC+AGG | 0.470450 | 4_1:-81345899 | None:intergenic |
| TTGAGACGAAGCAACAGGTT+GGG | 0.473888 | 4_1:-81344917 | None:intergenic |
| CTGGGTTCCGTACATTCCTC+TGG | 0.477758 | 4_1:+81346436 | Msa0577160:CDS |
| CCATTCATAAACAGGTATTA+CGG | 0.479214 | 4_1:+81349067 | Msa0577160:CDS |
| TGAATCGAAGGCGCTAGATC+CGG | 0.485544 | 4_1:-81344762 | None:intergenic |
| GTTTACTGATAAACTTATTG+AGG | 0.486345 | 4_1:+81348346 | Msa0577160:CDS |
| TGGCCTCTTGTATGGAAAGA+AGG | 0.486407 | 4_1:+81345684 | Msa0577160:CDS |
| GGTCTTCTGTGAATTTGATT+GGG | 0.487595 | 4_1:+81347914 | Msa0577160:intron |
| AACAGGTTGGGAATCAGGTT+GGG | 0.488198 | 4_1:-81344905 | None:intergenic |
| TGAAGCAAATGAAAATGGAC+TGG | 0.492057 | 4_1:+81346417 | Msa0577160:CDS |
| GCTCAACTGGTCATGCATCA+AGG | 0.495363 | 4_1:+81345854 | Msa0577160:intron |
| TTTACTGATAAACTTATTGA+GGG | 0.500654 | 4_1:+81348347 | Msa0577160:CDS |
| ACCTGACACATCAGGTGCAT+CGG | 0.502548 | 4_1:-81348730 | None:intergenic |
| CTCAACTGGTCATGCATCAA+GGG | 0.504378 | 4_1:+81345855 | Msa0577160:CDS |
| CCTGACACATCAGGTGCATC+GGG | 0.504797 | 4_1:-81348729 | None:intergenic |
| GGTGCATCGGGAGATGGAAC+GGG | 0.505043 | 4_1:-81348717 | None:intergenic |
| CAACAGGTTGGGAATCAGGT+TGG | 0.510916 | 4_1:-81344906 | None:intergenic |
| TCTTGCGTTGCACCCAAAGA+AGG | 0.511738 | 4_1:+81346638 | Msa0577160:CDS |
| TATATTTATATATAAAATCA+AGG | 0.514458 | 4_1:-81344697 | None:intergenic |
| ACCTTAACACCTGACACATC+AGG | 0.515689 | 4_1:-81348738 | None:intergenic |
| TTCCGCACTCATTTCAGCAA+TGG | 0.517076 | 4_1:-81348652 | None:intergenic |
| AAGTATTCAGGTTCGGATTG+GGG | 0.518136 | 4_1:-81344994 | None:intergenic |
| CCCGATGCACCTGATGTGTC+AGG | 0.518892 | 4_1:+81348729 | Msa0577160:CDS |
| GAGACTTCAGTCTATCAACT+TGG | 0.519749 | 4_1:-81346606 | None:intergenic |
| CTTGAGACGAAGCAACAGGT+TGG | 0.521578 | 4_1:-81344918 | None:intergenic |
| CGCTGCTCCAGAGGAATGTA+CGG | 0.522172 | 4_1:-81346443 | None:intergenic |
| ACATCAGGTGCATCGGGAGA+TGG | 0.546211 | 4_1:-81348723 | None:intergenic |
| AGGTGCATCGGGAGATGGAA+CGG | 0.548169 | 4_1:-81348718 | None:intergenic |
| GAAGCAAAGAAAGCCAATAG+AGG | 0.548787 | 4_1:+81351443 | Msa0577160:CDS |
| TGGCTCGAAACATTCCCTGT+TGG | 0.567509 | 4_1:+81345378 | Msa0577160:CDS |
| GATGCATACCGCTGCTCCAG+AGG | 0.579974 | 4_1:-81346452 | None:intergenic |
| TTTCAGAATGCATTCGAAGA+GGG | 0.581363 | 4_1:+81345661 | Msa0577160:intron |
| TTGGGAATTAGATGAACTTG+AGG | 0.587442 | 4_1:+81347932 | Msa0577160:CDS |
| AAACCTTCTTTCCATACAAG+AGG | 0.588752 | 4_1:-81345687 | None:intergenic |
| TACTGATAAACTTATTGAGG+GGG | 0.590109 | 4_1:+81348349 | Msa0577160:CDS |
| TCTTGTAGGCAAGGGAAGCA+CGG | 0.590773 | 4_1:+81348622 | Msa0577160:intron |
| GAAGCAAATGAAAATGGACT+GGG | 0.591547 | 4_1:+81346418 | Msa0577160:CDS |
| ATATCCAGTTGAGCCAAAGC+CGG | 0.594956 | 4_1:+81347768 | Msa0577160:CDS |
| CATAAACAGGTATTACGGAA+AGG | 0.597848 | 4_1:+81349072 | Msa0577160:CDS |
| AGATGAATTTGAACAAAGCA+CGG | 0.612836 | 4_1:+81347732 | Msa0577160:CDS |
| CGTACATTCCTCTGGAGCAG+CGG | 0.615658 | 4_1:+81346444 | Msa0577160:CDS |
| CAGAATGCATTCGAAGAGGG+TGG | 0.615896 | 4_1:+81345664 | Msa0577160:intron |
| CTTTCTTTAGGAATTTGTCA+GGG | 0.618977 | 4_1:+81348490 | Msa0577160:intron |
| AACATTCCCTGTTGGCACTG+AGG | 0.620526 | 4_1:+81345386 | Msa0577160:CDS |
| CTTCCTTTAGGAATTTGTCA+GGG | 0.624700 | 4_1:+81351421 | Msa0577160:intron |
| TTACTGATAAACTTATTGAG+GGG | 0.626862 | 4_1:+81348348 | Msa0577160:CDS |
| GTATTACGGAAAGGCTCATG+AGG | 0.629234 | 4_1:+81349081 | Msa0577160:CDS |
| AACACCATCACAATGAGGAA+AGG | 0.636181 | 4_1:+81344850 | Msa0577160:exon |
| AGCAAAGAAAGCCAATAGAG+AGG | 0.639340 | 4_1:+81348526 | Msa0577160:CDS |
| GATTAACTCAGTTCAGAGAG+AGG | 0.642388 | 4_1:+81346376 | Msa0577160:CDS |
| CTGCATACCTGTTGTTGTAG+CGG | 0.645013 | 4_1:+81345892 | Msa0577160:CDS |
| ATGCTGTGTATCAAATCAAG+TGG | 0.652338 | 4_1:+81345512 | Msa0577160:CDS |
| AACAAACCTCAGTGCCAACA+GGG | 0.653030 | 4_1:-81345392 | None:intergenic |
| TCAACTGGTCATGCATCAAG+GGG | 0.656478 | 4_1:+81345856 | Msa0577160:CDS |
| TTATATATAAAATCAAGGCG+TGG | 0.660704 | 4_1:-81344692 | None:intergenic |
| GTTTCAGAATGCATTCGAAG+AGG | 0.661105 | 4_1:+81345660 | Msa0577160:intron |
| AGCCATTGCTGAAATGAGTG+CGG | 0.676262 | 4_1:+81348650 | Msa0577160:CDS |
| ACGCAAACACCATCACAATG+AGG | 0.678492 | 4_1:+81344845 | Msa0577160:exon |
| TGAATTTGAACAAAGCACGG+AGG | 0.770299 | 4_1:+81347735 | Msa0577160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTTTTTCATTAAATT+TGG | + | chr4_1:81345973-81345992 | Msa0577160:intron | 10.0% |
| !!! | AATTGTTTTAAATTTTTTAG+TGG | + | chr4_1:81346516-81346535 | Msa0577160:intron | 10.0% |
| !!! | AAATAATAATGATAGTTTTT+GGG | - | chr4_1:81346785-81346804 | None:intergenic | 10.0% |
| !!! | AAAATAATAATGATAGTTTT+TGG | - | chr4_1:81346786-81346805 | None:intergenic | 10.0% |
| !!! | AAATTTTAAATCATAATTAC+CGG | - | chr4_1:81347790-81347809 | None:intergenic | 10.0% |
| !!! | ATACATTTAATTTAATTTGA+AGG | - | chr4_1:81349412-81349431 | None:intergenic | 10.0% |
| !! | TTAATATTATTAAGGAGAAA+CGG | + | chr4_1:81345232-81345251 | Msa0577160:intron | 15.0% |
| !! | TTTCGTTTATATCATTAATT+AGG | + | chr4_1:81345271-81345290 | Msa0577160:intron | 15.0% |
| !!! | TTTTTTTTTTGTAATATCAG+TGG | + | chr4_1:81345479-81345498 | Msa0577160:intron | 15.0% |
| !!! | TTTTTTTTTGTAATATCAGT+GGG | + | chr4_1:81345480-81345499 | Msa0577160:intron | 15.0% |
| !! | AAAAAATACTGTAATTAGTT+TGG | - | chr4_1:81345963-81345982 | None:intergenic | 15.0% |
| !! | AATGAACTAATAAACAAATT+AGG | - | chr4_1:81346477-81346496 | None:intergenic | 15.0% |
| !!! | AATTTAAAACAATTTACCAA+AGG | - | chr4_1:81346510-81346529 | None:intergenic | 15.0% |
| !! | AACAACAAAAACTAAATAAA+CGG | - | chr4_1:81347397-81347416 | None:intergenic | 15.0% |
| !!! | TCATTTTTTTTTTGTTTGTT+TGG | + | chr4_1:81349524-81349543 | Msa0577160:intron | 15.0% |
| !!! | ATTCGTGTTAATTTTGAATT+TGG | + | chr4_1:81345114-81345133 | Msa0577160:intron | 20.0% |
| !! | TTGAAGACATAAATTAAATG+AGG | - | chr4_1:81346577-81346596 | None:intergenic | 20.0% |
| !! | GTAAAAAATATACCTTCTTT+GGG | - | chr4_1:81346653-81346672 | None:intergenic | 20.0% |
| !! | AGTAAAAAATATACCTTCTT+TGG | - | chr4_1:81346654-81346673 | None:intergenic | 20.0% |
| !! | TTAAATTATTAAACATGCGT+TGG | + | chr4_1:81346729-81346748 | Msa0577160:intron | 20.0% |
| !!! | ATATGTTCAAATTTTGTATG+AGG | + | chr4_1:81347614-81347633 | Msa0577160:intron | 20.0% |
| !! | CTAGGAAATATTTAATTATC+TGG | + | chr4_1:81348159-81348178 | Msa0577160:intron | 20.0% |
| !! | AATATTTAATTATCTGGTGT+AGG | + | chr4_1:81348165-81348184 | Msa0577160:intron | 20.0% |
| !! | CCATTATTAGTATATTTATC+TGG | - | chr4_1:81348285-81348304 | None:intergenic | 20.0% |
| !! | CCAGATAAATATACTAATAA+TGG | + | chr4_1:81348282-81348301 | Msa0577160:intron | 20.0% |
| !! | AATATACTAATAATGGTCAA+AGG | + | chr4_1:81348289-81348308 | Msa0577160:intron | 20.0% |
| !! | TTTACTGATAAACTTATTGA+GGG | + | chr4_1:81348347-81348366 | Msa0577160:CDS | 20.0% |
| !! | AATAAACTCAATATCATCAT+CGG | - | chr4_1:81348953-81348972 | None:intergenic | 20.0% |
| !! | ATATATTATCAGTAAACTGT+AGG | - | chr4_1:81349028-81349047 | None:intergenic | 20.0% |
| !! | AACTTCATATAGAACAAATA+CGG | - | chr4_1:81349158-81349177 | None:intergenic | 20.0% |
| !! | GGAAAAAATAATACTTTCAT+AGG | - | chr4_1:81349391-81349410 | None:intergenic | 20.0% |
| !! | ATTATACAGTTCAACTTTAA+TGG | + | chr4_1:81349824-81349843 | Msa0577160:intron | 20.0% |
| !! | TTATACAGTTCAACTTTAAT+GGG | + | chr4_1:81349825-81349844 | Msa0577160:intron | 20.0% |
| !!! | CATTTTGTTTAGTTTATAGA+AGG | - | chr4_1:81349891-81349910 | None:intergenic | 20.0% |
| !! | CTTCTATAAACTAAACAAAA+TGG | + | chr4_1:81349889-81349908 | Msa0577160:intron | 20.0% |
| !!! | TTATTTGATTCGTCAATTAT+AGG | + | chr4_1:81350790-81350809 | Msa0577160:intron | 20.0% |
| !!! | TATTTGATTCGTCAATTATA+GGG | + | chr4_1:81350791-81350810 | Msa0577160:intron | 20.0% |
| !! | AATTTCTAAATGATACTTAC+TGG | - | chr4_1:81350942-81350961 | None:intergenic | 20.0% |
| !! | TCATTTAGAAATTATCCAAT+AGG | + | chr4_1:81350949-81350968 | Msa0577160:intron | 20.0% |
| !! | TACGAAAAAATTCAGAAAAA+TGG | - | chr4_1:81351250-81351269 | None:intergenic | 20.0% |
| !! | ACAATGATTGTAAAAATAAC+AGG | - | chr4_1:81348098-81348117 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTACAATCATTG+TGG | + | chr4_1:81348097-81348116 | Msa0577160:intron | 20.0% |
| !! | GGATATAACGCTTAATTTTT+GGG | - | chr4_1:81344674-81344693 | None:intergenic | 25.0% |
| !! | TGGATATAACGCTTAATTTT+TGG | - | chr4_1:81344675-81344694 | None:intergenic | 25.0% |
| ! | TTATATATAAAATCAAGGCG+TGG | - | chr4_1:81344695-81344714 | None:intergenic | 25.0% |
| ! | TAAGATAAATATGACCAGAT+CGG | - | chr4_1:81345802-81345821 | None:intergenic | 25.0% |
| !!! | ACCAAAACTATTTTTCCTTT+GGG | - | chr4_1:81346080-81346099 | None:intergenic | 25.0% |
| !!! | AACCAAAACTATTTTTCCTT+TGG | - | chr4_1:81346081-81346100 | None:intergenic | 25.0% |
| ! | ATCTTAACAACTAAGCATTT+AGG | - | chr4_1:81346203-81346222 | None:intergenic | 25.0% |
| !! | AGATATCAGTTTTACTTACT+TGG | + | chr4_1:81346232-81346251 | Msa0577160:intron | 25.0% |
| !! | TTAATCCCAATTTTATCAGA+TGG | - | chr4_1:81346362-81346381 | None:intergenic | 25.0% |
| !!! | AAATTTTTTAGTGGTTCCTT+TGG | + | chr4_1:81346525-81346544 | Msa0577160:intron | 25.0% |
| ! | ATTACTAAGGAATTTACCAA+AGG | - | chr4_1:81346544-81346563 | None:intergenic | 25.0% |
| ! | ACTAACAATATTGACAGTAA+AGG | - | chr4_1:81346677-81346696 | None:intergenic | 25.0% |
| ! | ATGCATAATAATACATGTGT+TGG | + | chr4_1:81346867-81346886 | Msa0577160:intron | 25.0% |
| ! | TGCATAATAATACATGTGTT+GGG | + | chr4_1:81346868-81346887 | Msa0577160:intron | 25.0% |
| !! | TCATTTTAAATAAATGAGCG+TGG | + | chr4_1:81347221-81347240 | Msa0577160:intron | 25.0% |
| !! | CTATATACTTTTACAATTGC+TGG | - | chr4_1:81347331-81347350 | None:intergenic | 25.0% |
| ! | AAAGTATATAGCCACTTATT+TGG | + | chr4_1:81347340-81347359 | Msa0577160:intron | 25.0% |
| ! | TCACATATTATAACAAGGTT+AGG | - | chr4_1:81347496-81347515 | None:intergenic | 25.0% |
| ! | CTGTATCACATATTATAACA+AGG | - | chr4_1:81347501-81347520 | None:intergenic | 25.0% |
| !! | CTTGTTATAATATGTGATAC+AGG | + | chr4_1:81347499-81347518 | Msa0577160:intron | 25.0% |
| ! | TCAAATTCATCTTCCTTAAA+TGG | - | chr4_1:81347724-81347743 | None:intergenic | 25.0% |
| !!! | GGATATTTTTTCTTACAGTA+CGG | + | chr4_1:81347843-81347862 | Msa0577160:intron | 25.0% |
| !!! | GATATTTTTTCTTACAGTAC+GGG | + | chr4_1:81347844-81347863 | Msa0577160:intron | 25.0% |
| ! | GTGACAAAGAAAACAAAATA+TGG | - | chr4_1:81347875-81347894 | None:intergenic | 25.0% |
| ! | AGAAAAATGGCTATTATAAG+CGG | - | chr4_1:81348035-81348054 | None:intergenic | 25.0% |
| ! | TACTAGAGATTGTTAAAGTT+AGG | + | chr4_1:81348254-81348273 | Msa0577160:intron | 25.0% |
| ! | ACTAGAGATTGTTAAAGTTA+GGG | + | chr4_1:81348255-81348274 | Msa0577160:intron | 25.0% |
| ! | GTTTACTGATAAACTTATTG+AGG | + | chr4_1:81348346-81348365 | Msa0577160:CDS | 25.0% |
| ! | TTACTGATAAACTTATTGAG+GGG | + | chr4_1:81348348-81348367 | Msa0577160:CDS | 25.0% |
| ! | AATATCTTTACTTACCTTGA+AGG | - | chr4_1:81348402-81348421 | None:intergenic | 25.0% |
| ! | AGAGATGATTGTAAATAGTT+AGG | + | chr4_1:81348821-81348840 | Msa0577160:intron | 25.0% |
| !!! | AACTTTAAGACATAAGTTGA+GGG | - | chr4_1:81348896-81348915 | None:intergenic | 25.0% |
| !!! | AAACTTTAAGACATAAGTTG+AGG | - | chr4_1:81348897-81348916 | None:intergenic | 25.0% |
| ! | TTATGTCTTAAAGTTTGAGA+TGG | + | chr4_1:81348901-81348920 | Msa0577160:intron | 25.0% |
| ! | ACATAATCAACAGAAATTCA+GGG | - | chr4_1:81348985-81349004 | None:intergenic | 25.0% |
| ! | AACATAATCAACAGAAATTC+AGG | - | chr4_1:81348986-81349005 | None:intergenic | 25.0% |
| ! | ACTTCATATAGAACAAATAC+GGG | - | chr4_1:81349157-81349176 | None:intergenic | 25.0% |
| ! | CATAGGTAAAGAAAATTTGA+TGG | - | chr4_1:81349203-81349222 | None:intergenic | 25.0% |
| ! | TACCTATGTAATTGTCTAAA+AGG | + | chr4_1:81349215-81349234 | Msa0577160:intron | 25.0% |
| ! | ACCTATGTAATTGTCTAAAA+GGG | + | chr4_1:81349216-81349235 | Msa0577160:intron | 25.0% |
| !! | CTCAGAAATTCTCTAAAAAA+TGG | - | chr4_1:81349323-81349342 | None:intergenic | 25.0% |
| !!! | TTGAATTCTCTTTGTTTTGA+TGG | - | chr4_1:81350062-81350081 | None:intergenic | 25.0% |
| ! | AACAAAAGAACCTAAATTGT+AGG | - | chr4_1:81350158-81350177 | None:intergenic | 25.0% |
| ! | ATTGGTTGATTGTACATATA+TGG | + | chr4_1:81350278-81350297 | Msa0577160:intron | 25.0% |
| ! | TTGGTTGATTGTACATATAT+GGG | + | chr4_1:81350279-81350298 | Msa0577160:intron | 25.0% |
| !!! | ATTTTATTAACTTGATCCAG+TGG | - | chr4_1:81350717-81350736 | None:intergenic | 25.0% |
| ! | GAATACATAGTTCAATAAAG+TGG | + | chr4_1:81350739-81350758 | Msa0577160:intron | 25.0% |
| ! | TGACGAATCAAATAATACTA+TGG | - | chr4_1:81350785-81350804 | None:intergenic | 25.0% |
| ! | TCAAATTCATCTTCCTTAAA+TGG | - | chr4_1:81347724-81347743 | None:intergenic | 25.0% |
| !!! | TTGACATTCTTTGAGTTTTT+TGG | + | chr4_1:81350973-81350992 | Msa0577160:intron | 25.0% |
| !!! | TGACATTCTTTGAGTTTTTT+GGG | + | chr4_1:81350974-81350993 | Msa0577160:intron | 25.0% |
| !!! | ATTTTTTCGTATTATTCTGC+AGG | + | chr4_1:81351259-81351278 | Msa0577160:intron | 25.0% |
| ! | TTACTTATCTTATGTCTAAC+AGG | - | chr4_1:81351349-81351368 | None:intergenic | 25.0% |
| ! | CATAAGATAAGTAACAAGTT+AGG | + | chr4_1:81351355-81351374 | Msa0577160:intron | 25.0% |
| ! | GAAAGAAAGAAAGAAAGAAA+GGG | - | chr4_1:81351386-81351405 | None:intergenic | 25.0% |
| ! | AGAAAGAAAGAAAGAAAGAA+AGG | - | chr4_1:81351387-81351406 | None:intergenic | 25.0% |
| !! | TCTTCTTATCGATTTGAATC+CGG | + | chr4_1:81344743-81344762 | Msa0577160:five_prime_UTR | 30.0% |
| !!! | AAAAAGATAGGGTTTTGAAG+GGG | - | chr4_1:81344788-81344807 | None:intergenic | 30.0% |
| !!! | GAAAAAGATAGGGTTTTGAA+GGG | - | chr4_1:81344789-81344808 | None:intergenic | 30.0% |
| !! | AGAAAAAGATAGGGTTTTGA+AGG | - | chr4_1:81344790-81344809 | None:intergenic | 30.0% |
| GAGAGAGAAAGAAAAAGATA+GGG | - | chr4_1:81344799-81344818 | None:intergenic | 30.0% | |
| AGAGAGAGAAAGAAAAAGAT+AGG | - | chr4_1:81344800-81344819 | None:intergenic | 30.0% | |
| ACAATAGAGATATCTCAGTT+AGG | - | chr4_1:81345324-81345343 | None:intergenic | 30.0% | |
| !!! | GTTGTTGATTTCAATTTTGC+AGG | + | chr4_1:81345347-81345366 | Msa0577160:intron | 30.0% |
| TAACCTAGAAGTGAGTATTA+AGG | + | chr4_1:81345543-81345562 | Msa0577160:intron | 30.0% | |
| AAGATAAATATGACCAGATC+GGG | - | chr4_1:81345801-81345820 | None:intergenic | 30.0% | |
| TTTAAGCTTCCAATTATGCA+TGG | + | chr4_1:81346000-81346019 | Msa0577160:intron | 30.0% | |
| ATATTTGGACCATGCATAAT+TGG | - | chr4_1:81346012-81346031 | None:intergenic | 30.0% | |
| !! | AAACTATTTTTCCTTTGGGT+GGG | - | chr4_1:81346076-81346095 | None:intergenic | 30.0% |
| !! | AAAACTATTTTTCCTTTGGG+TGG | - | chr4_1:81346077-81346096 | None:intergenic | 30.0% |
| ! | ACCCAAAGGAAAAATAGTTT+TGG | + | chr4_1:81346076-81346095 | Msa0577160:intron | 30.0% |
| !!! | ATTTTATCAGATGGTGGAAA+AGG | - | chr4_1:81346353-81346372 | None:intergenic | 30.0% |
| TTTCCACCATCTGATAAAAT+TGG | + | chr4_1:81346353-81346372 | Msa0577160:CDS | 30.0% | |
| TTCCACCATCTGATAAAATT+GGG | + | chr4_1:81346354-81346373 | Msa0577160:CDS | 30.0% | |
| TCCTATGAAGCAAATGAAAA+TGG | + | chr4_1:81346412-81346431 | Msa0577160:CDS | 30.0% | |
| ! | TCCATTTTCATTTGCTTCAT+AGG | - | chr4_1:81346416-81346435 | None:intergenic | 30.0% |
| !!! | TTCATTTTTAGCTGTTCCTT+TGG | + | chr4_1:81346491-81346510 | Msa0577160:intron | 30.0% |
| !!! | TAATGATAGTTTTTGGGTAC+AGG | - | chr4_1:81346779-81346798 | None:intergenic | 30.0% |
| TATCATCATAGCAGTATTTC+AGG | - | chr4_1:81346831-81346850 | None:intergenic | 30.0% | |
| TGAAATACTGCTATGATGAT+AGG | + | chr4_1:81346830-81346849 | Msa0577160:intron | 30.0% | |
| ACTTGACTACATATAAGTGA+TGG | - | chr4_1:81346928-81346947 | None:intergenic | 30.0% | |
| CTTTCATCTGTATATCTCTA+AGG | + | chr4_1:81346954-81346973 | Msa0577160:intron | 30.0% | |
| TGAATTGAAACCATGGTAAA+TGG | - | chr4_1:81347106-81347125 | None:intergenic | 30.0% | |
| AACTGCAAATACCAAATAAG+TGG | - | chr4_1:81347354-81347373 | None:intergenic | 30.0% | |
| !! | TTCACAAATTTGCTACATCA+AGG | - | chr4_1:81347462-81347481 | None:intergenic | 30.0% |
| TCTTTAATCTATCCAACTTC+AGG | - | chr4_1:81347539-81347558 | None:intergenic | 30.0% | |
| AGATTTCTATCAGCCATTTA+AGG | + | chr4_1:81347708-81347727 | Msa0577160:intron | 30.0% | |
| AGATGAATTTGAACAAAGCA+CGG | + | chr4_1:81347732-81347751 | Msa0577160:CDS | 30.0% | |
| !! | TAAATCATAATTACCGGCTT+TGG | - | chr4_1:81347784-81347803 | None:intergenic | 30.0% |
| TAAACTGTAACATATCAGGA+AGG | - | chr4_1:81347987-81348006 | None:intergenic | 30.0% | |
| TGTCTAAACTGTAACATATC+AGG | - | chr4_1:81347991-81348010 | None:intergenic | 30.0% | |
| !!! | ATAGCCATTTTTCTGAATCT+TGG | + | chr4_1:81348041-81348060 | Msa0577160:intron | 30.0% |
| AACACCAAGATTCAGAAAAA+TGG | - | chr4_1:81348048-81348067 | None:intergenic | 30.0% | |
| TTAATTATCTGGTGTAGGAA+TGG | + | chr4_1:81348170-81348189 | Msa0577160:intron | 30.0% | |
| CTTTAACAATCTCTAGTAGA+AGG | - | chr4_1:81348252-81348271 | None:intergenic | 30.0% | |
| CTAGAGATTGTTAAAGTTAG+GGG | + | chr4_1:81348256-81348275 | Msa0577160:intron | 30.0% | |
| TTGTTTGTTTAATATCCTGC+AGG | + | chr4_1:81348322-81348341 | Msa0577160:intron | 30.0% | |
| TACTGATAAACTTATTGAGG+GGG | + | chr4_1:81348349-81348368 | Msa0577160:CDS | 30.0% | |
| !! | TGACTTTGAAGTAACAAGTT+AGG | + | chr4_1:81348448-81348467 | Msa0577160:intron | 30.0% |
| CTCTCTTTCTTTCTTTCTTT+AGG | + | chr4_1:81348478-81348497 | Msa0577160:intron | 30.0% | |
| ! | TCTTTCTTTAGGAATTTGTC+AGG | + | chr4_1:81348489-81348508 | Msa0577160:intron | 30.0% |
| ! | CTTTCTTTAGGAATTTGTCA+GGG | + | chr4_1:81348490-81348509 | Msa0577160:intron | 30.0% |
| AAGGTTAAAAAAGCAGAAAG+CGG | - | chr4_1:81348595-81348614 | None:intergenic | 30.0% | |
| ! | TAACCTTCTTTTTCTCTTGT+AGG | + | chr4_1:81348608-81348627 | Msa0577160:intron | 30.0% |
| TTCTTCTACCAAAAAGGAAA+AGG | - | chr4_1:81348789-81348808 | None:intergenic | 30.0% | |
| GTGAATTTCTTCTACCAAAA+AGG | - | chr4_1:81348795-81348814 | None:intergenic | 30.0% | |
| CCATTCATAAACAGGTATTA+CGG | + | chr4_1:81349067-81349086 | Msa0577160:CDS | 30.0% | |
| GAAAATTGCAATTGTTGTCT+TGG | - | chr4_1:81349121-81349140 | None:intergenic | 30.0% | |
| TGTTCTATATGAAGTTTACC+CGG | + | chr4_1:81349162-81349181 | Msa0577160:intron | 30.0% | |
| ! | TCCCTTTTAGACAATTACAT+AGG | - | chr4_1:81349220-81349239 | None:intergenic | 30.0% |
| AAATCCTAGATAAGTGAAGT+AGG | + | chr4_1:81349265-81349284 | Msa0577160:intron | 30.0% | |
| !!! | ATTTTTTTGTAGCTTCCATC+AGG | - | chr4_1:81349573-81349592 | None:intergenic | 30.0% |
| ! | AGTCAATCTGTACTATGTTT+TGG | + | chr4_1:81349725-81349744 | Msa0577160:intron | 30.0% |
| AATTAAATTTACGCATCACG+AGG | + | chr4_1:81349785-81349804 | Msa0577160:intron | 30.0% | |
| !!! | AGCAAAATTGTTTTGAACAC+CGG | + | chr4_1:81349929-81349948 | Msa0577160:intron | 30.0% |
| TTGGCAATTATCAATGTCAT+GGG | + | chr4_1:81350019-81350038 | Msa0577160:intron | 30.0% | |
| ! | TATTCCAGTAGTTTGTATAC+TGG | + | chr4_1:81350094-81350113 | Msa0577160:intron | 30.0% |
| GAATGTTTGTCCTACAATTT+AGG | + | chr4_1:81350145-81350164 | Msa0577160:intron | 30.0% | |
| AAAGAATGAGAGCTCTATAT+TGG | + | chr4_1:81350260-81350279 | Msa0577160:intron | 30.0% | |
| TTGTACATATATGGGTGAAT+CGG | + | chr4_1:81350287-81350306 | Msa0577160:intron | 30.0% | |
| TGATCCTATGTCAAACAAAA+GGG | - | chr4_1:81350316-81350335 | None:intergenic | 30.0% | |
| ATGATCCTATGTCAAACAAA+AGG | - | chr4_1:81350317-81350336 | None:intergenic | 30.0% | |
| TTCATATGACTATATCAGCT+TGG | + | chr4_1:81350341-81350360 | Msa0577160:intron | 30.0% | |
| TTACATTTATAGTCGAGTTC+TGG | + | chr4_1:81350378-81350397 | Msa0577160:intron | 30.0% | |
| TTAAATGTTACTCCAAACAG+AGG | - | chr4_1:81350461-81350480 | None:intergenic | 30.0% | |
| AAGCAATACTATCCAACTTA+AGG | - | chr4_1:81350629-81350648 | None:intergenic | 30.0% | |
| CTAAACCCAGAAAACTTATA+GGG | - | chr4_1:81350653-81350672 | None:intergenic | 30.0% | |
| TCTAAACCCAGAAAACTTAT+AGG | - | chr4_1:81350654-81350673 | None:intergenic | 30.0% | |
| GTTCAATAAAGTGGTTATGA+TGG | + | chr4_1:81350748-81350767 | Msa0577160:intron | 30.0% | |
| ! | ATTATAGGGAATTTTGTACG+AGG | + | chr4_1:81350805-81350824 | Msa0577160:intron | 30.0% |
| ! | AGTTTTCTATCAGCCATTTA+AGG | + | chr4_1:81350860-81350879 | Msa0577160:intron | 30.0% |
| !! | TAAATGATACTTACTGGCTT+TGG | - | chr4_1:81350936-81350955 | None:intergenic | 30.0% |
| TCAAAGAATGTCAATCCTAT+TGG | - | chr4_1:81350967-81350986 | None:intergenic | 30.0% | |
| ATTTACATAACCATGCTGTA+CGG | - | chr4_1:81351008-81351027 | None:intergenic | 30.0% | |
| CACATAGAGAAAATCAAATC+TGG | - | chr4_1:81351090-81351109 | None:intergenic | 30.0% | |
| CTTTCTTTCTTTCTTCCTTT+AGG | + | chr4_1:81351409-81351428 | Msa0577160:intron | 30.0% | |
| TCTCGTAAAAACAACGCTAT+CGG | - | chr4_1:81344643-81344662 | None:intergenic | 35.0% | |
| GACACGCTCTTACATTTAAA+AGG | - | chr4_1:81344723-81344742 | None:intergenic | 35.0% | |
| ! | ATCTTCGAAGTATTCAGGTT+CGG | - | chr4_1:81345004-81345023 | None:intergenic | 35.0% |
| CTTCGAAGATAAGCGTAATT+TGG | + | chr4_1:81345014-81345033 | Msa0577160:CDS | 35.0% | |
| CTTCAGCATTAAAAGCTACA+CGG | - | chr4_1:81345166-81345185 | None:intergenic | 35.0% | |
| ! | CAATTTTGCAGGAAGATTTG+TGG | + | chr4_1:81345358-81345377 | Msa0577160:intron | 35.0% |
| TTTGATACACAGCATCCAAT+TGG | - | chr4_1:81345507-81345526 | None:intergenic | 35.0% | |
| ATGCTGTGTATCAAATCAAG+TGG | + | chr4_1:81345512-81345531 | Msa0577160:CDS | 35.0% | |
| GTCATCAACGAAAATCTAAG+CGG | - | chr4_1:81345569-81345588 | None:intergenic | 35.0% | |
| TTTCAGAATGCATTCGAAGA+GGG | + | chr4_1:81345661-81345680 | Msa0577160:intron | 35.0% | |
| AAACCTTCTTTCCATACAAG+AGG | - | chr4_1:81345690-81345709 | None:intergenic | 35.0% | |
| GGAAAGAAGGTTTACCTATT+TGG | + | chr4_1:81345697-81345716 | Msa0577160:CDS | 35.0% | |
| AACCATAAACTACTTACGCT+CGG | - | chr4_1:81345728-81345747 | None:intergenic | 35.0% | |
| AGATAAATATGACCAGATCG+GGG | - | chr4_1:81345800-81345819 | None:intergenic | 35.0% | |
| GTGATCAGAGGAAACATATT+TGG | - | chr4_1:81346027-81346046 | None:intergenic | 35.0% | |
| !! | AACTATTTTTCCTTTGGGTG+GGG | - | chr4_1:81346075-81346094 | None:intergenic | 35.0% |
| GTTTGTATTTATCTCCTTGC+CGG | + | chr4_1:81346143-81346162 | Msa0577160:intron | 35.0% | |
| AAGTCTACACCAGATAAACA+AGG | - | chr4_1:81346170-81346189 | None:intergenic | 35.0% | |
| TTGTTTATCTGGTGTAGACT+TGG | + | chr4_1:81346169-81346188 | Msa0577160:intron | 35.0% | |
| ATCAGCTCATCAAAGTTGAA+AGG | - | chr4_1:81346266-81346285 | None:intergenic | 35.0% | |
| TTTCAACTCCTTTCTGTAAC+AGG | + | chr4_1:81346319-81346338 | Msa0577160:intron | 35.0% | |
| TGATACAACCTGTTACAGAA+AGG | - | chr4_1:81346330-81346349 | None:intergenic | 35.0% | |
| ! | ATCCCAATTTTATCAGATGG+TGG | - | chr4_1:81346359-81346378 | None:intergenic | 35.0% |
| TGAAGCAAATGAAAATGGAC+TGG | + | chr4_1:81346417-81346436 | Msa0577160:CDS | 35.0% | |
| ! | GAAGCAAATGAAAATGGACT+GGG | + | chr4_1:81346418-81346437 | Msa0577160:CDS | 35.0% |
| AGGAAGTTGAGAGATTACTA+AGG | - | chr4_1:81346557-81346576 | None:intergenic | 35.0% | |
| TACTGCTATGATGATAGGTA+TGG | + | chr4_1:81346835-81346854 | Msa0577160:intron | 35.0% | |
| GAAAAGTGAAAATGCCTCTT+AGG | - | chr4_1:81346993-81347012 | None:intergenic | 35.0% | |
| CGTACTGGAGAGTAAAAATA+GGG | - | chr4_1:81347030-81347049 | None:intergenic | 35.0% | |
| !! | GAAAGCATTTCCATTTACCA+TGG | + | chr4_1:81347093-81347112 | Msa0577160:intron | 35.0% |
| TGCATCATGAATTGAAACCA+TGG | - | chr4_1:81347113-81347132 | None:intergenic | 35.0% | |
| GTTTCCTTCAGAGTAACATT+TGG | + | chr4_1:81347183-81347202 | Msa0577160:intron | 35.0% | |
| ACTTCCAAATGTTACTCTGA+AGG | - | chr4_1:81347190-81347209 | None:intergenic | 35.0% | |
| TTCAGAGTAACATTTGGAAG+TGG | + | chr4_1:81347189-81347208 | Msa0577160:intron | 35.0% | |
| ACATTTGGAAGTGGAACATA+TGG | + | chr4_1:81347198-81347217 | Msa0577160:intron | 35.0% | |
| !!! | TTTTTGTTGTTAGCATGCAC+AGG | + | chr4_1:81347406-81347425 | Msa0577160:intron | 35.0% |
| CTAAAGCCCAAAAACTTACA+GGG | - | chr4_1:81347579-81347598 | None:intergenic | 35.0% | |
| ! | TCTAAAGCCCAAAAACTTAC+AGG | - | chr4_1:81347580-81347599 | None:intergenic | 35.0% |
| ! | AAATTTTGTATGAGGCATGC+TGG | + | chr4_1:81347622-81347641 | Msa0577160:intron | 35.0% |
| AAATGGCTGATAGAAATCTG+TGG | - | chr4_1:81347707-81347726 | None:intergenic | 35.0% | |
| GGCTCAACTGGATATATTAT+CGG | - | chr4_1:81347763-81347782 | None:intergenic | 35.0% | |
| CCAAAGACTATCAATCGTAT+CGG | - | chr4_1:81347815-81347834 | None:intergenic | 35.0% | |
| ! | CGATACGATTGATAGTCTTT+GGG | + | chr4_1:81347813-81347832 | Msa0577160:intron | 35.0% |
| !! | TTGATAGTCTTTGGGTTGTT+TGG | + | chr4_1:81347821-81347840 | Msa0577160:intron | 35.0% |
| !! | TGATAGTCTTTGGGTTGTTT+GGG | + | chr4_1:81347822-81347841 | Msa0577160:intron | 35.0% |
| AGGTCTTCTGTGAATTTGAT+TGG | + | chr4_1:81347913-81347932 | Msa0577160:intron | 35.0% | |
| GGTCTTCTGTGAATTTGATT+GGG | + | chr4_1:81347914-81347933 | Msa0577160:intron | 35.0% | |
| TTGGGAATTAGATGAACTTG+AGG | + | chr4_1:81347932-81347951 | Msa0577160:CDS | 35.0% | |
| TATCAGGAAGGTTTAACAAC+AGG | - | chr4_1:81347975-81347994 | None:intergenic | 35.0% | |
| TTGCTATGTTACTGAGTTCT+AGG | + | chr4_1:81348141-81348160 | Msa0577160:intron | 35.0% | |
| !!! | TTACCTTGAAGGCATCTTTT+TGG | - | chr4_1:81348391-81348410 | None:intergenic | 35.0% |
| TTAGGAATTTGTCAGGGAAA+AGG | + | chr4_1:81348496-81348515 | Msa0577160:intron | 35.0% | |
| AATTTGTCAGGGAAAAGGTT+CGG | + | chr4_1:81348501-81348520 | Msa0577160:CDS | 35.0% | |
| !! | CTTTTGGTGATTTGTGATCT+TGG | + | chr4_1:81348551-81348570 | Msa0577160:intron | 35.0% |
| TTGCCTACAAGAGAAAAAGA+AGG | - | chr4_1:81348614-81348633 | None:intergenic | 35.0% | |
| ! | TTCTTTTTCTCTTGTAGGCA+AGG | + | chr4_1:81348613-81348632 | Msa0577160:intron | 35.0% |
| ! | TCTTTTTCTCTTGTAGGCAA+GGG | + | chr4_1:81348614-81348633 | Msa0577160:intron | 35.0% |
| !! | AGGTGTTAAGGTTGGTATTT+GGG | + | chr4_1:81348749-81348768 | Msa0577160:intron | 35.0% |
| CCGTAATACCTGTTTATGAA+TGG | - | chr4_1:81349070-81349089 | None:intergenic | 35.0% | |
| CATAAACAGGTATTACGGAA+AGG | + | chr4_1:81349072-81349091 | Msa0577160:CDS | 35.0% | |
| ! | GACAACAATTGCAATTTTCC+TGG | + | chr4_1:81349122-81349141 | Msa0577160:intron | 35.0% |
| AGTTTATAGAAGGCCTAAGT+CGG | - | chr4_1:81349881-81349900 | None:intergenic | 35.0% | |
| TACCAATGCATGATGTTTCT+TGG | + | chr4_1:81350000-81350019 | Msa0577160:intron | 35.0% | |
| CTTGGCAATTATCAATGTCA+TGG | + | chr4_1:81350018-81350037 | Msa0577160:intron | 35.0% | |
| GAATATTTCTCCAACCAGTT+AGG | + | chr4_1:81350187-81350206 | Msa0577160:intron | 35.0% | |
| ATACTAGCAGAAATCCTAAC+TGG | - | chr4_1:81350204-81350223 | None:intergenic | 35.0% | |
| TGTACATATATGGGTGAATC+GGG | + | chr4_1:81350288-81350307 | Msa0577160:intron | 35.0% | |
| ATCCTATGTCAAACAAAAGG+GGG | - | chr4_1:81350314-81350333 | None:intergenic | 35.0% | |
| GATCCTATGTCAAACAAAAG+GGG | - | chr4_1:81350315-81350334 | None:intergenic | 35.0% | |
| TGTTGTCATTAGACAGTTAC+AGG | + | chr4_1:81350589-81350608 | Msa0577160:intron | 35.0% | |
| !! | TGCTTTGAAACACCTTAAGT+TGG | + | chr4_1:81350614-81350633 | Msa0577160:intron | 35.0% |
| GGCTCAACTGGATATATTAT+TGG | - | chr4_1:81347763-81347782 | None:intergenic | 35.0% | |
| TCTTGTTGACAAGGGTTATT+TGG | - | chr4_1:81351046-81351065 | None:intergenic | 35.0% | |
| AATAACCCTTGTCAACAAGA+TGG | + | chr4_1:81351046-81351065 | Msa0577160:intron | 35.0% | |
| ! | ATGTATGTATTGCTTGTTGC+AGG | + | chr4_1:81351114-81351133 | Msa0577160:intron | 35.0% |
| CTGTGAATTTGATGAACTTG+AGG | + | chr4_1:81351141-81351160 | Msa0577160:intron | 35.0% | |
| GAGGTAATGAACTCACTTTA+TGG | + | chr4_1:81351160-81351179 | Msa0577160:intron | 35.0% | |
| CTTATCTTATGTCTAACAGG+AGG | - | chr4_1:81351346-81351365 | None:intergenic | 35.0% | |
| ! | TCTTCCTTTAGGAATTTGTC+AGG | + | chr4_1:81351420-81351439 | Msa0577160:intron | 35.0% |
| ! | CTTCCTTTAGGAATTTGTCA+GGG | + | chr4_1:81351421-81351440 | Msa0577160:intron | 35.0% |
| ATGGTGTTTGCGTTCGAATT+CGG | - | chr4_1:81344838-81344857 | None:intergenic | 40.0% | |
| AACACCATCACAATGAGGAA+AGG | + | chr4_1:81344850-81344869 | Msa0577160:exon | 40.0% | |
| ! | TTTTCTTGAGACGAAGCAAC+AGG | - | chr4_1:81344925-81344944 | None:intergenic | 40.0% |
| !!! | GTTTTGAGGCGTTTAGCTTT+AGG | - | chr4_1:81344967-81344986 | None:intergenic | 40.0% |
| ! | ATTGGGGTTTAGAGGTTTTG+AGG | - | chr4_1:81344981-81345000 | None:intergenic | 40.0% |
| ! | AAGTATTCAGGTTCGGATTG+GGG | - | chr4_1:81344997-81345016 | None:intergenic | 40.0% |
| ! | GAAGTATTCAGGTTCGGATT+GGG | - | chr4_1:81344998-81345017 | None:intergenic | 40.0% |
| ! | CGCTTATCTTCGAAGTATTC+AGG | - | chr4_1:81345009-81345028 | None:intergenic | 40.0% |
| GTAATATCAGTGGGACCAAT+TGG | + | chr4_1:81345489-81345508 | Msa0577160:intron | 40.0% | |
| GTTTCAGAATGCATTCGAAG+AGG | + | chr4_1:81345660-81345679 | Msa0577160:intron | 40.0% | |
| ! | GGTTTCATCATTTTGCGAGT+TGG | + | chr4_1:81345744-81345763 | Msa0577160:intron | 40.0% |
| ATAAATATGACCAGATCGGG+GGG | - | chr4_1:81345798-81345817 | None:intergenic | 40.0% | |
| GATAAATATGACCAGATCGG+GGG | - | chr4_1:81345799-81345818 | None:intergenic | 40.0% | |
| CATTGCTTGATCCACTAAAC+TGG | + | chr4_1:81346049-81346068 | Msa0577160:intron | 40.0% | |
| TACACCAGATAAACAAGGTC+CGG | - | chr4_1:81346165-81346184 | None:intergenic | 40.0% | |
| GATTAACTCAGTTCAGAGAG+AGG | + | chr4_1:81346376-81346395 | Msa0577160:CDS | 40.0% | |
| GAGACTTCAGTCTATCAACT+TGG | - | chr4_1:81346609-81346628 | None:intergenic | 40.0% | |
| !!! | TGATAGTTTTTGGGTACAGG+CGG | - | chr4_1:81346776-81346795 | None:intergenic | 40.0% |
| GAAAACCTGTTCTTCCTAAG+AGG | + | chr4_1:81346976-81346995 | Msa0577160:intron | 40.0% | |
| AAATGCCTCTTAGGAAGAAC+AGG | - | chr4_1:81346984-81347003 | None:intergenic | 40.0% | |
| GCGTACTGGAGAGTAAAAAT+AGG | - | chr4_1:81347031-81347050 | None:intergenic | 40.0% | |
| GCTATTTAACAAGTGCGTAC+TGG | - | chr4_1:81347045-81347064 | None:intergenic | 40.0% | |
| TTTGCTACATCAAGGACAAC+AGG | - | chr4_1:81347454-81347473 | None:intergenic | 40.0% | |
| !! | TGCTTTGAAACACCTGAAGT+TGG | + | chr4_1:81347524-81347543 | Msa0577160:CDS | 40.0% |
| ! | TGCTTGCCCTGTAAGTTTTT+GGG | + | chr4_1:81347570-81347589 | Msa0577160:intron | 40.0% |
| !! | GGCTTTAGAATGTTACTCAC+AGG | + | chr4_1:81347591-81347610 | Msa0577160:intron | 40.0% |
| TGAATTTGAACAAAGCACGG+AGG | + | chr4_1:81347735-81347754 | Msa0577160:CDS | 40.0% | |
| ! | CCGATACGATTGATAGTCTT+TGG | + | chr4_1:81347812-81347831 | Msa0577160:intron | 40.0% |
| ! | ACTTATGCATTGCTTGTTGC+AGG | + | chr4_1:81347893-81347912 | Msa0577160:intron | 40.0% |
| TGGCTATTATAAGCGGTAGA+AGG | - | chr4_1:81348028-81348047 | None:intergenic | 40.0% | |
| !! | GAATCTTGGTGTTATTCTGC+AGG | + | chr4_1:81348055-81348074 | Msa0577160:intron | 40.0% |
| GAACTCAGTAACATAGCAAC+AGG | - | chr4_1:81348140-81348159 | None:intergenic | 40.0% | |
| CTAGTAGAAGGACATGTAAG+AGG | - | chr4_1:81348240-81348259 | None:intergenic | 40.0% | |
| GTTTATCAGTAAACTCCTGC+AGG | - | chr4_1:81348340-81348359 | None:intergenic | 40.0% | |
| AGACCAAAAAGATGCCTTCA+AGG | + | chr4_1:81348385-81348404 | Msa0577160:CDS | 40.0% | |
| ATTTGTCAGGGAAAAGGTTC+GGG | + | chr4_1:81348502-81348521 | Msa0577160:CDS | 40.0% | |
| AGCAAAGAAAGCCAATAGAG+AGG | + | chr4_1:81348526-81348545 | Msa0577160:CDS | 40.0% | |
| !!! | AGCCAATAGAGAGGTACTTT+TGG | + | chr4_1:81348535-81348554 | Msa0577160:intron | 40.0% |
| !! | CACCAAAAGTACCTCTCTAT+TGG | - | chr4_1:81348540-81348559 | None:intergenic | 40.0% |
| !! | CAGGTGTTAAGGTTGGTATT+TGG | + | chr4_1:81348748-81348767 | Msa0577160:intron | 40.0% |
| ! | AACTGCGACCTTTTCCTTTT+TGG | + | chr4_1:81348778-81348797 | Msa0577160:intron | 40.0% |
| AGATGGACATATCCATATCC+AGG | + | chr4_1:81348918-81348937 | Msa0577160:intron | 40.0% | |
| GATGGACATATCCATATCCA+GGG | + | chr4_1:81348919-81348938 | Msa0577160:intron | 40.0% | |
| TGCAGTCTCCATTCATAAAC+AGG | + | chr4_1:81349059-81349078 | Msa0577160:intron | 40.0% | |
| ! | AAATTTGATGGAGCACCAAG+AGG | - | chr4_1:81349191-81349210 | None:intergenic | 40.0% |
| TCCTAGATAAGTGAAGTAGG+TGG | + | chr4_1:81349268-81349287 | Msa0577160:intron | 40.0% | |
| ACCACCTACTTCACTTATCT+AGG | - | chr4_1:81349272-81349291 | None:intergenic | 40.0% | |
| GGATAATTGAGACGTGTTTC+TGG | + | chr4_1:81349294-81349313 | Msa0577160:intron | 40.0% | |
| ATCAATTGTCCTCTTCCTGA+TGG | + | chr4_1:81349555-81349574 | Msa0577160:intron | 40.0% | |
| GTTTGACAAAGACCAGAACA+GGG | - | chr4_1:81349672-81349691 | None:intergenic | 40.0% | |
| TGTTTGACAAAGACCAGAAC+AGG | - | chr4_1:81349673-81349692 | None:intergenic | 40.0% | |
| TGCCAAGAAACATCATGCAT+TGG | - | chr4_1:81350005-81350024 | None:intergenic | 40.0% | |
| CAATTATCAATGTCATGGGC+TGG | + | chr4_1:81350023-81350042 | Msa0577160:intron | 40.0% | |
| GAAGCCAGTATACAAACTAC+TGG | - | chr4_1:81350101-81350120 | None:intergenic | 40.0% | |
| ! | AACTTCGTTTTACGAGTCAG+TGG | + | chr4_1:81350123-81350142 | Msa0577160:intron | 40.0% |
| TAGCAGAAATCCTAACTGGT+TGG | - | chr4_1:81350200-81350219 | None:intergenic | 40.0% | |
| GTAGAGACAACAAATGAGCA+TGG | + | chr4_1:81350237-81350256 | Msa0577160:intron | 40.0% | |
| ! | CATTTATAGTCGAGTTCTGG+AGG | + | chr4_1:81350381-81350400 | Msa0577160:intron | 40.0% |
| ATGTTACTCCAAACAGAGGT+GGG | - | chr4_1:81350457-81350476 | None:intergenic | 40.0% | |
| AATGTTACTCCAAACAGAGG+TGG | - | chr4_1:81350458-81350477 | None:intergenic | 40.0% | |
| !!! | GAGGATTTGTTTTGGAGAGT+AGG | - | chr4_1:81350505-81350524 | None:intergenic | 40.0% |
| !! | TCAGAGAGGAGGATTTGTTT+TGG | - | chr4_1:81350513-81350532 | None:intergenic | 40.0% |
| ! | ACAAATCCTCCTCTCTGAAA+AGG | + | chr4_1:81350515-81350534 | Msa0577160:intron | 40.0% |
| ! | CAAATCCTCCTCTCTGAAAA+GGG | + | chr4_1:81350516-81350535 | Msa0577160:intron | 40.0% |
| ! | TGCTTGCCCTATAAGTTTTC+TGG | + | chr4_1:81350644-81350663 | Msa0577160:intron | 40.0% |
| ! | GCTTGCCCTATAAGTTTTCT+GGG | + | chr4_1:81350645-81350664 | Msa0577160:intron | 40.0% |
| GAAAAGAACATTGACCGATG+AGG | - | chr4_1:81350838-81350857 | None:intergenic | 40.0% | |
| ! | GGATATTTTTCCGTACAGCA+TGG | + | chr4_1:81350995-81351014 | Msa0577160:intron | 40.0% |
| GTGGTTGACTGAACCTTAAA+TGG | + | chr4_1:81351320-81351339 | Msa0577160:intron | 40.0% | |
| CTTCCCTGACAAATTCCTAA+AGG | - | chr4_1:81351427-81351446 | None:intergenic | 40.0% | |
| !!! | GTTTTGAAGGGGTGAATCGA+AGG | - | chr4_1:81344777-81344796 | None:intergenic | 45.0% |
| ACGCAAACACCATCACAATG+AGG | + | chr4_1:81344845-81344864 | Msa0577160:exon | 45.0% | |
| AGCACCTTTCCTCATTGTGA+TGG | - | chr4_1:81344857-81344876 | None:intergenic | 45.0% | |
| !! | GGAATCAGGTTGGGAATCTT+CGG | - | chr4_1:81344899-81344918 | None:intergenic | 45.0% |
| ! | AACAGGTTGGGAATCAGGTT+GGG | - | chr4_1:81344908-81344927 | None:intergenic | 45.0% |
| TTGAGACGAAGCAACAGGTT+GGG | - | chr4_1:81344920-81344939 | None:intergenic | 45.0% | |
| !! | GAGGCGTTTAGCTTTAGGTT+TGG | - | chr4_1:81344962-81344981 | None:intergenic | 45.0% |
| ! | CGAAGTATTCAGGTTCGGAT+TGG | - | chr4_1:81344999-81345018 | None:intergenic | 45.0% |
| AACAAACCTCAGTGCCAACA+GGG | - | chr4_1:81345395-81345414 | None:intergenic | 45.0% | |
| CGGCCTTAATACTCACTTCT+AGG | - | chr4_1:81345549-81345568 | None:intergenic | 45.0% | |
| TGGCCTCTTGTATGGAAAGA+AGG | + | chr4_1:81345684-81345703 | Msa0577160:CDS | 45.0% | |
| CACCGAGCGTAAGTAGTTTA+TGG | + | chr4_1:81345723-81345742 | Msa0577160:intron | 45.0% | |
| !!! | CATCATTTTGCGAGTTGGTC+AGG | + | chr4_1:81345749-81345768 | Msa0577160:intron | 45.0% |
| !! | GGTCAGGCAACTAATTTGCT+TGG | + | chr4_1:81345765-81345784 | Msa0577160:intron | 45.0% |
| !! | CAGGCAACTAATTTGCTTGG+TGG | + | chr4_1:81345768-81345787 | Msa0577160:intron | 45.0% |
| CTCAACTGGTCATGCATCAA+GGG | + | chr4_1:81345855-81345874 | Msa0577160:CDS | 45.0% | |
| TCAACTGGTCATGCATCAAG+GGG | + | chr4_1:81345856-81345875 | Msa0577160:CDS | 45.0% | |
| CTGCATACCTGTTGTTGTAG+CGG | + | chr4_1:81345892-81345911 | Msa0577160:CDS | 45.0% | |
| AACGCGTCTTCATGATACAC+AGG | - | chr4_1:81345938-81345957 | None:intergenic | 45.0% | |
| TCAAGCAATGTCGTGATCAG+AGG | - | chr4_1:81346039-81346058 | None:intergenic | 45.0% | |
| !!! | GATAGTTTTTGGGTACAGGC+GGG | - | chr4_1:81346775-81346794 | None:intergenic | 45.0% |
| ! | CTGCTTGCCCTGTAAGTTTT+TGG | + | chr4_1:81347569-81347588 | Msa0577160:intron | 45.0% |
| ATATCCAGTTGAGCCAAAGC+CGG | + | chr4_1:81347768-81347787 | Msa0577160:CDS | 45.0% | |
| TCAGTAACATAGCAACAGGC+AGG | - | chr4_1:81348136-81348155 | None:intergenic | 45.0% | |
| ACTTATTGAGGGGGAAGAGT+TGG | + | chr4_1:81348358-81348377 | Msa0577160:CDS | 45.0% | |
| AGCCATTGCTGAAATGAGTG+CGG | + | chr4_1:81348650-81348669 | Msa0577160:CDS | 45.0% | |
| TTCCGCACTCATTTCAGCAA+TGG | - | chr4_1:81348655-81348674 | None:intergenic | 45.0% | |
| ACCTGATGTGTCAGGTGTTA+AGG | + | chr4_1:81348737-81348756 | Msa0577160:CDS | 45.0% | |
| ACCTTAACACCTGACACATC+AGG | - | chr4_1:81348741-81348760 | None:intergenic | 45.0% | |
| GATGTGTCAGGTGTTAAGGT+TGG | + | chr4_1:81348741-81348760 | Msa0577160:intron | 45.0% | |
| GTATTACGGAAAGGCTCATG+AGG | + | chr4_1:81349081-81349100 | Msa0577160:CDS | 45.0% | |
| AAATACGGGCAAAACAAGCC+AGG | - | chr4_1:81349143-81349162 | None:intergenic | 45.0% | |
| GATAAGTGAAGTAGGTGGTG+AGG | + | chr4_1:81349273-81349292 | Msa0577160:intron | 45.0% | |
| TTGTAGCTTCCATCAGGAAG+AGG | - | chr4_1:81349567-81349586 | None:intergenic | 45.0% | |
| GAGATGTACTATCCCTGTTC+TGG | + | chr4_1:81349657-81349676 | Msa0577160:intron | 45.0% | |
| CAGCACACATCTATGAAGCA+CGG | - | chr4_1:81349977-81349996 | None:intergenic | 45.0% | |
| CATTTGCTTGCTTGTCATGC+TGG | + | chr4_1:81350404-81350423 | Msa0577160:intron | 45.0% | |
| TATACGTTCCCACCTCTGTT+TGG | + | chr4_1:81350446-81350465 | Msa0577160:intron | 45.0% | |
| ! | TAACACCCTTTTCAGAGAGG+AGG | - | chr4_1:81350524-81350543 | None:intergenic | 45.0% |
| !! | TCCTCTCTGAAAAGGGTGTT+AGG | + | chr4_1:81350523-81350542 | Msa0577160:intron | 45.0% |
| ! | TCCTAACACCCTTTTCAGAG+AGG | - | chr4_1:81350527-81350546 | None:intergenic | 45.0% |
| !! | GTGGTTATGATGGAGTGTTG+CGG | + | chr4_1:81350758-81350777 | Msa0577160:intron | 45.0% |
| ! | AGGGAATTTTGTACGAGGCA+TGG | + | chr4_1:81350810-81350829 | Msa0577160:intron | 45.0% |
| CCTGTCCATCTTGTTGACAA+GGG | - | chr4_1:81351054-81351073 | None:intergenic | 45.0% | |
| ACCTGTCCATCTTGTTGACA+AGG | - | chr4_1:81351055-81351074 | None:intergenic | 45.0% | |
| CAACAAGATGGACAGGTAAC+AGG | + | chr4_1:81351058-81351077 | Msa0577160:intron | 45.0% | |
| TCAACTGCAACACATCAGGA+AGG | - | chr4_1:81351196-81351215 | None:intergenic | 45.0% | |
| TCTCTCAACTGCAACACATC+AGG | - | chr4_1:81351200-81351219 | None:intergenic | 45.0% | |
| GTCTAACAGGAGGCCATTTA+AGG | - | chr4_1:81351336-81351355 | None:intergenic | 45.0% | |
| !! | TATATTTATATATAAAATCA+AGG | - | chr4_1:81344700-81344719 | None:intergenic | 5.0% |
| !! | TTTGTTTATTAATATTATTA+AGG | + | chr4_1:81345224-81345243 | Msa0577160:intron | 5.0% |
| !! | TGAATCGAAGGCGCTAGATC+CGG | - | chr4_1:81344765-81344784 | None:intergenic | 50.0% |
| ! | TTGGGAATCTTCGGTGTGCT+TGG | - | chr4_1:81344890-81344909 | None:intergenic | 50.0% |
| ! | CAACAGGTTGGGAATCAGGT+TGG | - | chr4_1:81344909-81344928 | None:intergenic | 50.0% |
| ! | GAAGCAACAGGTTGGGAATC+AGG | - | chr4_1:81344913-81344932 | None:intergenic | 50.0% |
| CTTGAGACGAAGCAACAGGT+TGG | - | chr4_1:81344921-81344940 | None:intergenic | 50.0% | |
| ! | AGGTTCGGATTGGGGTTTAG+AGG | - | chr4_1:81344989-81345008 | None:intergenic | 50.0% |
| TGGCTCGAAACATTCCCTGT+TGG | + | chr4_1:81345378-81345397 | Msa0577160:CDS | 50.0% | |
| AACATTCCCTGTTGGCACTG+AGG | + | chr4_1:81345386-81345405 | Msa0577160:CDS | 50.0% | |
| CAACAAACCTCAGTGCCAAC+AGG | - | chr4_1:81345396-81345415 | None:intergenic | 50.0% | |
| CAGAATGCATTCGAAGAGGG+TGG | + | chr4_1:81345664-81345683 | Msa0577160:intron | 50.0% | |
| !! | TACGCTCGGTGCAACCAAAT+AGG | - | chr4_1:81345714-81345733 | None:intergenic | 50.0% |
| GTTGAGCTGCAAACGACAAC+AGG | - | chr4_1:81345841-81345860 | None:intergenic | 50.0% | |
| ! | GTTGTCGTTTGCAGCTCAAC+TGG | + | chr4_1:81345841-81345860 | Msa0577160:intron | 50.0% |
| GCTCAACTGGTCATGCATCA+AGG | + | chr4_1:81345854-81345873 | Msa0577160:intron | 50.0% | |
| GAGCTTACCGCTACAACAAC+AGG | - | chr4_1:81345902-81345921 | None:intergenic | 50.0% | |
| TAGCGGTAAGCTCTCACACT+GGG | + | chr4_1:81345909-81345928 | Msa0577160:intron | 50.0% | |
| CAGATAAACAAGGTCCGGCA+AGG | - | chr4_1:81346160-81346179 | None:intergenic | 50.0% | |
| ! | CTTGCCGGACCTTGTTTATC+TGG | + | chr4_1:81346158-81346177 | Msa0577160:intron | 50.0% |
| TCTTGCGTTGCACCCAAAGA+AGG | + | chr4_1:81346638-81346657 | Msa0577160:CDS | 50.0% | |
| TTTGGGTACAGGCGGGAAAA+GGG | - | chr4_1:81346768-81346787 | None:intergenic | 50.0% | |
| !! | TTTTGGGTACAGGCGGGAAA+AGG | - | chr4_1:81346769-81346788 | None:intergenic | 50.0% |
| !! | ATTACCGGCTTTGGCTCAAC+TGG | - | chr4_1:81347775-81347794 | None:intergenic | 50.0% |
| ACCTGACACATCAGGTGCAT+CGG | - | chr4_1:81348733-81348752 | None:intergenic | 50.0% | |
| GACATATCCATATCCAGGGC+AGG | + | chr4_1:81348923-81348942 | Msa0577160:intron | 50.0% | |
| AAGTTTACCCGGCAACCTCT+TGG | + | chr4_1:81349173-81349192 | Msa0577160:intron | 50.0% | |
| ! | ATTCGCGTCGAAAGCATGTC+CGG | - | chr4_1:81349951-81349970 | None:intergenic | 50.0% |
| !! | AATGTCATGGGCTGGAATGC+TGG | + | chr4_1:81350031-81350050 | Msa0577160:intron | 50.0% |
| !! | GGCCCCCTTTTGTTTGACAT+AGG | + | chr4_1:81350309-81350328 | Msa0577160:intron | 50.0% |
| !! | GGAGACAGTTACCGACTTAC+TGG | + | chr4_1:81350544-81350563 | Msa0577160:intron | 50.0% |
| !! | ACAGTTACCGACTTACTGGC+AGG | + | chr4_1:81350548-81350567 | Msa0577160:intron | 50.0% |
| TACGAGGCATGGTTCCTCAT+CGG | + | chr4_1:81350821-81350840 | Msa0577160:intron | 50.0% | |
| !! | CTTACTGGCTTTGGCTCAAC+TGG | - | chr4_1:81350927-81350946 | None:intergenic | 50.0% |
| CCCTTGTCAACAAGATGGAC+AGG | + | chr4_1:81351051-81351070 | Msa0577160:intron | 50.0% | |
| GAAGAGGGTGGCCTCTTGTA+TGG | + | chr4_1:81345676-81345695 | Msa0577160:CDS | 55.0% | |
| ATATGACCAGATCGGGGGGT+TGG | - | chr4_1:81345794-81345813 | None:intergenic | 55.0% | |
| GTAGCGGTAAGCTCTCACAC+TGG | + | chr4_1:81345908-81345927 | Msa0577160:intron | 55.0% | |
| TTTGGGTGGGGCCAGTTTAG+TGG | - | chr4_1:81346063-81346082 | None:intergenic | 55.0% | |
| ACTAAACTGGCCCCACCCAA+AGG | + | chr4_1:81346062-81346081 | Msa0577160:intron | 55.0% | |
| CTGGGTTCCGTACATTCCTC+TGG | + | chr4_1:81346436-81346455 | Msa0577160:CDS | 55.0% | |
| CGCTGCTCCAGAGGAATGTA+CGG | - | chr4_1:81346446-81346465 | None:intergenic | 55.0% | |
| !! | CGTACATTCCTCTGGAGCAG+CGG | + | chr4_1:81346444-81346463 | Msa0577160:CDS | 55.0% |
| AGGTGCATCGGGAGATGGAA+CGG | - | chr4_1:81348721-81348740 | None:intergenic | 55.0% | |
| ACATCAGGTGCATCGGGAGA+TGG | - | chr4_1:81348726-81348745 | None:intergenic | 55.0% | |
| CCTGACACATCAGGTGCATC+GGG | - | chr4_1:81348732-81348751 | None:intergenic | 55.0% | |
| ! | ATGGAGCACCAAGAGGTTGC+CGG | - | chr4_1:81349184-81349203 | None:intergenic | 55.0% |
| GAAGGCCTAAGTCGGAAACC+AGG | - | chr4_1:81349873-81349892 | None:intergenic | 55.0% | |
| !! | TGCTTGTCATGCTGGCTTCG+TGG | + | chr4_1:81350412-81350431 | Msa0577160:intron | 55.0% |
| GATGCATACCGCTGCTCCAG+AGG | - | chr4_1:81346455-81346474 | None:intergenic | 60.0% | |
| GGTGCATCGGGAGATGGAAC+GGG | - | chr4_1:81348720-81348739 | None:intergenic | 60.0% | |
| CCCGATGCACCTGATGTGTC+AGG | + | chr4_1:81348729-81348748 | Msa0577160:CDS | 60.0% | |
| CGGTCATCCTGCCCTGGATA+TGG | - | chr4_1:81348933-81348952 | None:intergenic | 60.0% | |
| CATCATCGGTCATCCTGCCC+TGG | - | chr4_1:81348939-81348958 | None:intergenic | 60.0% | |
| ! | TGGAGCACCAAGAGGTTGCC+GGG | - | chr4_1:81349183-81349202 | None:intergenic | 60.0% |
| GCCTAAGTCGGAAACCAGGC+GGG | - | chr4_1:81349869-81349888 | None:intergenic | 60.0% | |
| GGCCTAAGTCGGAAACCAGG+CGG | - | chr4_1:81349870-81349889 | None:intergenic | 60.0% | |
| GACGACGCCTGCCAGTAAGT+CGG | - | chr4_1:81350558-81350577 | None:intergenic | 60.0% | |
| ! | ACTGGCAGGCGTCGTCATAC+TGG | + | chr4_1:81350562-81350581 | Msa0577160:intron | 60.0% |
| CGTACGCTTCAGCTGACCAC+TGG | + | chr4_1:81350698-81350717 | Msa0577160:intron | 60.0% | |
| ! | AGTCGGAAACCAGGCGGGCT+CGG | - | chr4_1:81349864-81349883 | None:intergenic | 65.0% |
| GCCCGCCTGGTTTCCGACTT+AGG | + | chr4_1:81349865-81349884 | Msa0577160:intron | 65.0% | |
| ! | GCAGGCGTCGTCATACTGGC+AGG | + | chr4_1:81350566-81350585 | Msa0577160:intron | 65.0% |
| TGGTGGCCAACCCCCCGATC+TGG | + | chr4_1:81345785-81345804 | Msa0577160:intron | 70.0% | |
| AAAGCTCACCCGAGCCCGCC+TGG | + | chr4_1:81349852-81349871 | Msa0577160:intron | 70.0% | |
| ! | GTCGGAAACCAGGCGGGCTC+GGG | - | chr4_1:81349863-81349882 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81344639 | 81351463 | 81344639 | ID=Msa0577160;Name=Msa0577160 |
| chr4_1 | mRNA | 81344639 | 81351463 | 81344639 | ID=Msa0577160-mRNA-1;Parent=Msa0577160;Name=Msa0577160-mRNA-1;_AED=0.22;_eAED=0.22;_QI=223|0.86|0.81|0.87|0.86|0.87|16|0|378 |
| chr4_1 | exon | 81344639 | 81345035 | 81344639 | ID=Msa0577160-mRNA-1:exon:29278;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81345369 | 81345407 | 81345369 | ID=Msa0577160-mRNA-1:exon:29279;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81345499 | 81345552 | 81345499 | ID=Msa0577160-mRNA-1:exon:29280;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81345667 | 81345730 | 81345667 | ID=Msa0577160-mRNA-1:exon:29281;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81345855 | 81345913 | 81345855 | ID=Msa0577160-mRNA-1:exon:29282;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81346341 | 81346465 | 81346341 | ID=Msa0577160-mRNA-1:exon:29283;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81346600 | 81346659 | 81346600 | ID=Msa0577160-mRNA-1:exon:29284;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81347521 | 81347579 | 81347521 | ID=Msa0577160-mRNA-1:exon:29285;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81347710 | 81347789 | 81347710 | ID=Msa0577160-mRNA-1:exon:29286;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81347915 | 81347953 | 81347915 | ID=Msa0577160-mRNA-1:exon:29287;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81348344 | 81348406 | 81348344 | ID=Msa0577160-mRNA-1:exon:29288;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81348500 | 81348547 | 81348500 | ID=Msa0577160-mRNA-1:exon:29289;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81348630 | 81348758 | 81348630 | ID=Msa0577160-mRNA-1:exon:29290;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81349064 | 81349102 | 81349064 | ID=Msa0577160-mRNA-1:exon:29291;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81350873 | 81350941 | 81350873 | ID=Msa0577160-mRNA-1:exon:29292;Parent=Msa0577160-mRNA-1 |
| chr4_1 | exon | 81351431 | 81351463 | 81351431 | ID=Msa0577160-mRNA-1:exon:29293;Parent=Msa0577160-mRNA-1 |
| chr4_1 | five_prime_UTR | 81344639 | 81344861 | 81344639 | ID=Msa0577160-mRNA-1:five_prime_utr;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81344862 | 81345035 | 81344862 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81345369 | 81345407 | 81345369 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81345499 | 81345552 | 81345499 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81345667 | 81345730 | 81345667 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81345855 | 81345913 | 81345855 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81346341 | 81346465 | 81346341 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81346600 | 81346659 | 81346600 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81347521 | 81347579 | 81347521 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81347710 | 81347789 | 81347710 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81347915 | 81347953 | 81347915 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81348344 | 81348406 | 81348344 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81348500 | 81348547 | 81348500 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81348630 | 81348758 | 81348630 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81349064 | 81349102 | 81349064 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81350873 | 81350941 | 81350873 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| chr4_1 | CDS | 81351431 | 81351463 | 81351431 | ID=Msa0577160-mRNA-1:cds;Parent=Msa0577160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
