Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577460 | PNX73943.1 | 88.760 | 516 | 57 | 1 | 1 | 515 | 1 | 516 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577460 | sp|A0A1P8B760|AMI4G_ARATH | 61.089 | 496 | 179 | 5 | 18 | 508 | 22 | 508 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577460 | A0A2K3L609 | 88.760 | 516 | 57 | 1 | 1 | 515 | 1 | 516 | 0.0 | 940 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0577460 | Msa0577810 | 0.950732 | 8.960899e-109 | -8.615850e-47 |
| Msa0577460 | Msa0605170 | 0.806368 | 8.510372e-50 | -8.615850e-47 |
| Msa0577460 | Msa1306800 | 0.986642 | 1.788185e-167 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577460 | MtrunA17_Chr8g0377691 | 87.961 | 515 | 62 | 0 | 1 | 515 | 1 | 515 | 0.0 | 919 |
| Msa0577460 | MtrunA17_Chr8g0377651 | 85.687 | 517 | 68 | 2 | 1 | 515 | 3 | 515 | 0.0 | 907 |
| Msa0577460 | MtrunA17_Chr8g0377701 | 86.965 | 514 | 66 | 1 | 1 | 513 | 1 | 514 | 0.0 | 906 |
| Msa0577460 | MtrunA17_Chr8g0377641 | 85.659 | 516 | 70 | 2 | 1 | 515 | 1 | 513 | 0.0 | 901 |
| Msa0577460 | MtrunA17_Chr8g0377681 | 83.757 | 511 | 82 | 1 | 6 | 515 | 3 | 513 | 0.0 | 876 |
| Msa0577460 | MtrunA17_Chr4g0037521 | 58.847 | 503 | 196 | 8 | 13 | 508 | 9 | 507 | 0.0 | 561 |
| Msa0577460 | MtrunA17_Chr4g0037491 | 57.566 | 304 | 117 | 7 | 205 | 499 | 1 | 301 | 1.13e-113 | 338 |
| Msa0577460 | MtrunA17_Chr8g0377661 | 89.744 | 78 | 8 | 0 | 438 | 515 | 1 | 78 | 3.50e-42 | 145 |
| Msa0577460 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 105 | 196 | 2 | 95 | 6.35e-30 | 112 |
| Msa0577460 | MtrunA17_Chr8g0385461 | 32.129 | 249 | 154 | 6 | 40 | 287 | 162 | 396 | 7.29e-30 | 123 |
| Msa0577460 | MtrunA17_Chr3g0097801 | 33.086 | 269 | 171 | 5 | 44 | 309 | 46 | 308 | 5.13e-27 | 114 |
| Msa0577460 | MtrunA17_Chr2g0279961 | 29.617 | 287 | 189 | 6 | 32 | 313 | 121 | 399 | 4.21e-23 | 103 |
| Msa0577460 | MtrunA17_Chr3g0130801 | 25.455 | 495 | 320 | 20 | 40 | 515 | 200 | 664 | 2.81e-19 | 91.3 |
| Msa0577460 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 2 | 140 | 257 | 63 | 176 | 2.02e-14 | 75.5 |
| Msa0577460 | MtrunA17_Chr8g0384851 | 28.516 | 256 | 166 | 6 | 26 | 271 | 117 | 365 | 1.28e-12 | 70.5 |
| Msa0577460 | MtrunA17_Chr4g0050371 | 34.507 | 142 | 87 | 2 | 138 | 278 | 107 | 243 | 8.16e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577460 | AT4G34880.2 | 61.089 | 496 | 179 | 5 | 18 | 508 | 22 | 508 | 0.0 | 568 |
| Msa0577460 | AT4G34880.1 | 53.737 | 495 | 171 | 5 | 18 | 508 | 22 | 462 | 1.97e-175 | 502 |
| Msa0577460 | AT5G07360.1 | 32.510 | 243 | 153 | 5 | 40 | 281 | 204 | 436 | 2.61e-28 | 119 |
| Msa0577460 | AT5G07360.3 | 32.510 | 243 | 153 | 5 | 40 | 281 | 204 | 436 | 2.61e-28 | 119 |
| Msa0577460 | AT3G25660.1 | 26.559 | 497 | 285 | 16 | 52 | 500 | 57 | 521 | 6.16e-26 | 111 |
| Msa0577460 | AT5G07360.2 | 32.099 | 243 | 147 | 6 | 40 | 281 | 204 | 429 | 3.29e-25 | 110 |
| Msa0577460 | AT5G64440.1 | 23.611 | 504 | 324 | 15 | 35 | 508 | 125 | 597 | 3.81e-20 | 94.4 |
| Msa0577460 | AT1G08980.1 | 41.176 | 119 | 64 | 2 | 140 | 257 | 64 | 177 | 2.46e-15 | 78.6 |
| Msa0577460 | AT5G09420.1 | 38.462 | 117 | 66 | 2 | 138 | 253 | 105 | 216 | 2.56e-11 | 66.6 |
Find 141 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATATACTCACCAATTT+TGG | 0.124167 | 4_1:-81830109 | None:intergenic |
| GTGAGACTGTACTACAATTT+TGG | 0.196580 | 4_1:+81829752 | Msa0577460:CDS |
| AAAATTAGAAAGTGATTATT+AGG | 0.221760 | 4_1:-81831309 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.222876 | 4_1:+81828386 | Msa0577460:CDS |
| AAAGTTGGGGCTATCATATT+AGG | 0.223239 | 4_1:+81828516 | Msa0577460:CDS |
| GTGAAACAACTAAATCTTTC+AGG | 0.228755 | 4_1:-81830042 | None:intergenic |
| AAAGCAGCAGGTTCTCTTTC+AGG | 0.230296 | 4_1:+81828363 | Msa0577460:CDS |
| TATTCACTTGCAACAATTAC+TGG | 0.233920 | 4_1:+81831006 | Msa0577460:three_prime_UTR |
| TCAGGACAACTCTTCAATTC+TGG | 0.254114 | 4_1:+81831331 | Msa0577460:three_prime_UTR |
| AATTTCAGTAGCAGCAAATT+TGG | 0.264283 | 4_1:+81829283 | Msa0577460:CDS |
| CAGGCAAAGAGGTGCTGTTT+TGG | 0.279043 | 4_1:+81829922 | Msa0577460:intron |
| ATGACAAGATGGTCACAAAA+TGG | 0.286173 | 4_1:+81830291 | Msa0577460:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.286345 | 4_1:-81829419 | None:intergenic |
| TTGATGTTAACTGCTTTCTT+TGG | 0.290637 | 4_1:-81828218 | None:intergenic |
| TGTAACTAACAGAAGTATTA+TGG | 0.292613 | 4_1:-81828115 | None:intergenic |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:-81829689 | None:intergenic |
| CAACAAGAAACACCCAAAAT+TGG | 0.311801 | 4_1:+81830096 | Msa0577460:CDS |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:-81828399 | None:intergenic |
| CAGCTTGCAGCATGAGATCT+TGG | 0.321727 | 4_1:-81830221 | None:intergenic |
| ATCTTAATTGTAGGAGAAAA+TGG | 0.323871 | 4_1:+81830191 | Msa0577460:intron |
| GATTGTTCAAGTTATAATTT+AGG | 0.332997 | 4_1:-81831100 | None:intergenic |
| TCCGATACGGTCCTGCAAAT+TGG | 0.338092 | 4_1:-81829590 | None:intergenic |
| CCATTTGGAATTTGCTTTGG+AGG | 0.345917 | 4_1:+81830441 | Msa0577460:CDS |
| ATCCTATTCTATCACCTTGT+TGG | 0.345923 | 4_1:-81831213 | None:intergenic |
| AAGGATGTTGGAAGCATAGA+AGG | 0.345981 | 4_1:-81828141 | None:intergenic |
| TACCCAACTGTGTCTTGCCT+TGG | 0.349156 | 4_1:-81829428 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.352248 | 4_1:+81830240 | Msa0577460:CDS |
| CTTCTAAGAACTCGAGAGTT+TGG | 0.352968 | 4_1:+81831276 | Msa0577460:three_prime_UTR |
| ACGCCGCTAAAGTATGAAAA+AGG | 0.370786 | 4_1:-81830360 | None:intergenic |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.375767 | 4_1:-81829427 | None:intergenic |
| TGAAAGAGAACCTGCTGCTT+TGG | 0.377922 | 4_1:-81828361 | None:intergenic |
| ATGCCATTTGGAATTTGCTT+TGG | 0.378888 | 4_1:+81830438 | Msa0577460:CDS |
| ATCTTTCAGGTATGCGTTCA+AGG | 0.379389 | 4_1:-81830029 | None:intergenic |
| TTTAGCGGCGTACTTGCTAT+TGG | 0.387009 | 4_1:+81830372 | Msa0577460:CDS |
| TCTAAGACTCCTTTGAGAAC+TGG | 0.389957 | 4_1:-81828285 | None:intergenic |
| TATGAAAAGGGCATGCCATT+TGG | 0.394570 | 4_1:+81830426 | Msa0577460:CDS |
| TCAGCATGTGCTAATGCATC+TGG | 0.402283 | 4_1:-81828315 | None:intergenic |
| CTTGCTATTGGAGGTTATCC+TGG | 0.409552 | 4_1:+81830384 | Msa0577460:CDS |
| TTAGAAAGTGATTATTAGGA+AGG | 0.413247 | 4_1:-81831305 | None:intergenic |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:+81828410 | Msa0577460:CDS |
| TTAGCAGGTTAAGGAAAGTT+GGG | 0.419376 | 4_1:+81828502 | Msa0577460:CDS |
| AAGCAGCAGGTTCTCTTTCA+GGG | 0.420978 | 4_1:+81828364 | Msa0577460:CDS |
| TTCTATGCTTCCAACATCCT+TGG | 0.422281 | 4_1:+81828143 | Msa0577460:CDS |
| TTGTAGGAGAAAATGGAGTA+TGG | 0.423860 | 4_1:+81830198 | Msa0577460:intron |
| CTAAGACTCCTTTGAGAACT+GGG | 0.435475 | 4_1:-81828284 | None:intergenic |
| CTGAAAAGACAAATGGAATT+GGG | 0.436484 | 4_1:+81830241 | Msa0577460:CDS |
| GTTAGCAGGTTAAGGAAAGT+TGG | 0.441622 | 4_1:+81828501 | Msa0577460:CDS |
| CAAACTCTCGAGTTCTTAGA+AGG | 0.441654 | 4_1:-81831275 | None:intergenic |
| CTGGCGTAGTTAGCAGGTTA+AGG | 0.445156 | 4_1:+81828493 | Msa0577460:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.446045 | 4_1:-81829239 | None:intergenic |
| AAGTTGGGGCTATCATATTA+GGG | 0.451734 | 4_1:+81828517 | Msa0577460:CDS |
| CTAACTACGCCAGCATCTCT+TGG | 0.471908 | 4_1:-81828483 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:+81829426 | Msa0577460:CDS |
| ACTACTGAGTTCATACTTGA+AGG | 0.474985 | 4_1:-81829350 | None:intergenic |
| AGTTCTCAAAGGAGTCTTAG+AGG | 0.475499 | 4_1:+81828287 | Msa0577460:CDS |
| TGACAAGATGGTCACAAAAT+GGG | 0.477152 | 4_1:+81830292 | Msa0577460:CDS |
| TGGAAAGGAACTTGAAGAAA+GGG | 0.479173 | 4_1:-81828095 | None:intergenic |
| TCAAGTATGAACTCAGTAGT+AGG | 0.480266 | 4_1:+81829353 | Msa0577460:CDS |
| AGCGGCGTACTTGCTATTGG+AGG | 0.487808 | 4_1:+81830375 | Msa0577460:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 4_1:+81830413 | Msa0577460:CDS |
| ATTTGCTTTGGAGGTTTGAA+AGG | 0.493826 | 4_1:+81830450 | Msa0577460:CDS |
| CTGCAAGCTGAAAAGACAAA+TGG | 0.495604 | 4_1:+81830234 | Msa0577460:CDS |
| ATGTCATTAACATTGTTGAT+TGG | 0.502333 | 4_1:+81831150 | Msa0577460:three_prime_UTR |
| GAGATGCTGGCGTAGTTAGC+AGG | 0.503203 | 4_1:+81828487 | Msa0577460:CDS |
| TCAGTAGTGCCAAGAGATGC+TGG | 0.504508 | 4_1:+81828474 | Msa0577460:CDS |
| ATGGAAAGGAACTTGAAGAA+AGG | 0.510934 | 4_1:-81828096 | None:intergenic |
| CAACAATTACTGGTGCACTT+AGG | 0.511812 | 4_1:+81831016 | Msa0577460:three_prime_UTR |
| TTGATTGGTCTTAAAATCCA+AGG | 0.512602 | 4_1:+81831165 | Msa0577460:three_prime_UTR |
| TAAGCAATTTCAATTAACTT+CGG | 0.513290 | 4_1:-81830480 | None:intergenic |
| GGTTCTCTTTCAGGGTTGCA+TGG | 0.513466 | 4_1:+81828372 | Msa0577460:CDS |
| CTAAAGAAAGACGGACTAAG+AGG | 0.516133 | 4_1:+81829713 | Msa0577460:CDS |
| AAAGTGATTATTAGGAAGGG+AGG | 0.516169 | 4_1:-81831301 | None:intergenic |
| TTATAATTTAGGCTTTGTTA+CGG | 0.516303 | 4_1:-81831089 | None:intergenic |
| CCTGGAGTCATTGTTCCAGC+AGG | 0.517601 | 4_1:+81830402 | Msa0577460:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:+81829674 | Msa0577460:CDS |
| CATACTTGAAGGGCATAAGA+TGG | 0.523653 | 4_1:-81829339 | None:intergenic |
| CTTCCAACATCCTTGGCTAG+TGG | 0.524164 | 4_1:+81828150 | Msa0577460:CDS |
| TACCAACAAGGTGATAGAAT+AGG | 0.524915 | 4_1:+81831211 | Msa0577460:three_prime_UTR |
| GCCAATTTGCAGGACCGTAT+CGG | 0.524930 | 4_1:+81829589 | Msa0577460:CDS |
| TAGAAAGTGATTATTAGGAA+GGG | 0.528813 | 4_1:-81831304 | None:intergenic |
| TCTGATGTGACCACTCACTC+AGG | 0.535215 | 4_1:-81828548 | None:intergenic |
| CCTCCAAAGCAAATTCCAAA+TGG | 0.541500 | 4_1:-81830441 | None:intergenic |
| TCTATGACCTTGTCGCACCT+TGG | 0.542595 | 4_1:-81831182 | None:intergenic |
| GAGAGAAGGACCAAAGCAGC+AGG | 0.543175 | 4_1:+81828351 | Msa0577460:CDS |
| CTACTGAGTTCATACTTGAA+GGG | 0.545399 | 4_1:-81829349 | None:intergenic |
| TCTTCAACTCTATTACTAGC+AGG | 0.546763 | 4_1:-81831050 | None:intergenic |
| GATCCTTGTGGTTCAAGTAG+TGG | 0.552399 | 4_1:+81829254 | Msa0577460:CDS |
| GATAAGCTAAACACTACTGC+AGG | 0.552473 | 4_1:+81828432 | Msa0577460:CDS |
| TATGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:+81829620 | Msa0577460:CDS |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:+81828164 | Msa0577460:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:+81829425 | Msa0577460:CDS |
| CTTTATTGAACATGACAAGA+TGG | 0.556585 | 4_1:+81830280 | Msa0577460:CDS |
| CCTGCTGGAACAATGACTCC+AGG | 0.556829 | 4_1:-81830402 | None:intergenic |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:+81829389 | Msa0577460:CDS |
| AATCCACTAGCCAAGGATGT+TGG | 0.560632 | 4_1:-81828153 | None:intergenic |
| CTAGTGAAGCTCCTAGTGGT+TGG | 0.561059 | 4_1:+81828574 | Msa0577460:CDS |
| TCTAACTTTCGAAGCGGAGG+GGG | 0.561714 | 4_1:-81830534 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.561856 | 4_1:+81830414 | Msa0577460:CDS |
| CTAGTGGTTGGAATGCTAGA+GGG | 0.566778 | 4_1:+81828586 | Msa0577460:CDS |
| TTTGTCAAAATCAGGCAAAG+AGG | 0.571847 | 4_1:+81829911 | Msa0577460:intron |
| TAAAGCGTCTATGCCTGCTA+TGG | 0.572957 | 4_1:-81829633 | None:intergenic |
| CTTCTAACTTTCGAAGCGGA+GGG | 0.575136 | 4_1:-81830536 | None:intergenic |
| GTTTCAACTTTCAAGACACA+TGG | 0.578997 | 4_1:+81828056 | None:intergenic |
| TGTTTCACCAGTGAAAAGCT+TGG | 0.582494 | 4_1:+81830057 | Msa0577460:CDS |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:+81829704 | Msa0577460:CDS |
| AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 4_1:+81830332 | Msa0577460:CDS |
| AACATAAGCAGCATCCGATA+CGG | 0.585738 | 4_1:-81829603 | None:intergenic |
| AAGTGATTATTAGGAAGGGA+GGG | 0.586814 | 4_1:-81831300 | None:intergenic |
| CCTAGTGGTTGGAATGCTAG+AGG | 0.590749 | 4_1:+81828585 | Msa0577460:CDS |
| ACTTCTAACTTTCGAAGCGG+AGG | 0.591701 | 4_1:-81830537 | None:intergenic |
| TTCTAACTTTCGAAGCGGAG+GGG | 0.592564 | 4_1:-81830535 | None:intergenic |
| TAGTGGTTGGAATGCTAGAG+GGG | 0.595776 | 4_1:+81828587 | Msa0577460:CDS |
| GATTGAGAATCCACTAGCCA+AGG | 0.599130 | 4_1:-81828160 | None:intergenic |
| CTGATGTGACCACTCACTCA+GGG | 0.604738 | 4_1:-81828547 | None:intergenic |
| TTGTGGTTCAAGTAGTGGAT+CGG | 0.605165 | 4_1:+81829259 | Msa0577460:CDS |
| AATTTGGTGACTGTGTCGCT+TGG | 0.605301 | 4_1:+81829299 | Msa0577460:CDS |
| ATACAAAACCCAGTTCTCAA+AGG | 0.608040 | 4_1:+81828276 | Msa0577460:CDS |
| CACACTTCTAACTTTCGAAG+CGG | 0.611010 | 4_1:-81830540 | None:intergenic |
| CCTCTAGCATTCCAACCACT+AGG | 0.611184 | 4_1:-81828585 | None:intergenic |
| GGAAGGCCACCCTGAGTGAG+TGG | 0.620599 | 4_1:+81828538 | Msa0577460:CDS |
| ATAGAGCTGATCAAGAGAGA+AGG | 0.622629 | 4_1:+81828337 | Msa0577460:CDS |
| AACATTGATCAAATTATCAG+TGG | 0.625881 | 4_1:+81829965 | Msa0577460:CDS |
| TAGCAGGTTAAGGAAAGTTG+GGG | 0.626810 | 4_1:+81828503 | Msa0577460:CDS |
| CATAGAAACTTGTACCAACA+AGG | 0.627359 | 4_1:+81831199 | Msa0577460:three_prime_UTR |
| TGGGGCTATCATATTAGGGA+AGG | 0.629817 | 4_1:+81828521 | Msa0577460:CDS |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:+81829677 | Msa0577460:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:-81829383 | None:intergenic |
| CTAACAGAAGTATTATGGAA+AGG | 0.639092 | 4_1:-81828110 | None:intergenic |
| AGGGCATAAGATGGAGCCGT+CGG | 0.639961 | 4_1:-81829330 | None:intergenic |
| TGAGTGAGTGGTCACATCAG+AGG | 0.640749 | 4_1:+81828550 | Msa0577460:CDS |
| AGGATGTTGGAAGCATAGAA+GGG | 0.642867 | 4_1:-81828140 | None:intergenic |
| TTAAAATCCAAGGTGCGACA+AGG | 0.643984 | 4_1:+81831175 | Msa0577460:three_prime_UTR |
| GTAGGCATCAAACCAACAGT+TGG | 0.645953 | 4_1:+81829371 | Msa0577460:CDS |
| GTGTAATTCCAATTAGCCCA+AGG | 0.647537 | 4_1:+81829411 | Msa0577460:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.659008 | 4_1:+81829242 | Msa0577460:CDS |
| AGGTCTAGTGAAGCTCCTAG+TGG | 0.675570 | 4_1:+81828570 | Msa0577460:CDS |
| ATGTGACCACTCACTCAGGG+TGG | 0.680087 | 4_1:-81828544 | None:intergenic |
| AGTGGTTGGAATGCTAGAGG+GGG | 0.698357 | 4_1:+81828588 | Msa0577460:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.705508 | 4_1:+81829229 | Msa0577460:intron |
| TCGCTTGGTACTGAAACCGA+CGG | 0.731304 | 4_1:+81829314 | Msa0577460:CDS |
| GATCCACTACTTGAACCACA+AGG | 0.767744 | 4_1:-81829257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATATAAGCAAAA+AGG | - | chr4_1:81828959-81828978 | None:intergenic | 10.0% |
| !!! | ATTTTAAGACTATATTATAT+TGG | + | chr4_1:81830670-81830689 | Msa0577460:intron | 10.0% |
| !! | AACTAAAAGTAAATAAAATC+TGG | + | chr4_1:81830580-81830599 | Msa0577460:intron | 15.0% |
| !!! | TAGTCTTTTACATATATTAT+GGG | - | chr4_1:81830705-81830724 | None:intergenic | 15.0% |
| !!! | TTAGTCTTTTACATATATTA+TGG | - | chr4_1:81830706-81830725 | None:intergenic | 15.0% |
| !! | AAAATTAGAAAGTGATTATT+AGG | - | chr4_1:81831312-81831331 | None:intergenic | 15.0% |
| !!! | TTTGTATTTTGATTTGTTTC+AGG | - | chr4_1:81828263-81828282 | None:intergenic | 20.0% |
| !!! | TATATATACTCACCAATTTT+GGG | - | chr4_1:81830111-81830130 | None:intergenic | 20.0% |
| !!! | ATATATATACTCACCAATTT+TGG | - | chr4_1:81830112-81830131 | None:intergenic | 20.0% |
| !! | GCATAAGAAAATAAACAAAA+GGG | - | chr4_1:81830144-81830163 | None:intergenic | 20.0% |
| !! | TGCATAAGAAAATAAACAAA+AGG | - | chr4_1:81830145-81830164 | None:intergenic | 20.0% |
| !!! | ATATGAATTAGTATTGATCA+AGG | + | chr4_1:81830164-81830183 | Msa0577460:intron | 20.0% |
| !! | TAAGCAATTTCAATTAACTT+CGG | - | chr4_1:81830483-81830502 | None:intergenic | 20.0% |
| !! | TTAAAACTCTATCTTAGTTA+TGG | - | chr4_1:81830827-81830846 | None:intergenic | 20.0% |
| !!! | TTATAATTTAGGCTTTGTTA+CGG | - | chr4_1:81831092-81831111 | None:intergenic | 20.0% |
| !!! | GATTGTTCAAGTTATAATTT+AGG | - | chr4_1:81831103-81831122 | None:intergenic | 20.0% |
| !!! | ATAATCACTTTCTAATTTTC+AGG | + | chr4_1:81831313-81831332 | Msa0577460:three_prime_UTR | 20.0% |
| !!! | TGTAACTAACAGAAGTATTA+TGG | - | chr4_1:81828118-81828137 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | - | chr4_1:81828402-81828421 | None:intergenic | 25.0% |
| ! | CTTATACTTACAATTGAGTA+TGG | - | chr4_1:81828822-81828841 | None:intergenic | 25.0% |
| ! | TACACACAAACTAAAAATAG+TGG | + | chr4_1:81828850-81828869 | Msa0577460:intron | 25.0% |
| !!! | TTATTTTTTGACTTGCAATC+AGG | - | chr4_1:81829006-81829025 | None:intergenic | 25.0% |
| ! | AACTCATTTGATATTTCTCT+CGG | - | chr4_1:81829132-81829151 | None:intergenic | 25.0% |
| ! | AAATGAGTTCATTAAAACCA+TGG | + | chr4_1:81829143-81829162 | Msa0577460:intron | 25.0% |
| ! | ATGAATGATTCTTGAAAATG+AGG | + | chr4_1:81829183-81829202 | Msa0577460:intron | 25.0% |
| ! | AGTCTATATATATGGCAAAT+TGG | + | chr4_1:81829451-81829470 | Msa0577460:intron | 25.0% |
| !! | TAGATAAATGTCTTTTGACA+GGG | - | chr4_1:81829531-81829550 | None:intergenic | 25.0% |
| !! | ATAGATAAATGTCTTTTGAC+AGG | - | chr4_1:81829532-81829551 | None:intergenic | 25.0% |
| !! | TTAGTTACCTTAACGTTTTT+AGG | - | chr4_1:81829814-81829833 | None:intergenic | 25.0% |
| ! | AAACTAGTATTTGTCAAGTA+CGG | + | chr4_1:81829840-81829859 | Msa0577460:intron | 25.0% |
| !! | CATATTCTTTTGTCAAAATC+AGG | + | chr4_1:81829903-81829922 | Msa0577460:intron | 25.0% |
| ! | AACATTGATCAAATTATCAG+TGG | + | chr4_1:81829965-81829984 | Msa0577460:CDS | 25.0% |
| ! | ATCTTAATTGTAGGAGAAAA+TGG | + | chr4_1:81830191-81830210 | Msa0577460:intron | 25.0% |
| !! | TTAGAAGTGTGAAGTATTAA+TGG | + | chr4_1:81830552-81830571 | Msa0577460:intron | 25.0% |
| !! | CTTTTACATATATTATGGGT+TGG | - | chr4_1:81830701-81830720 | None:intergenic | 25.0% |
| ! | TATGGTTTATGACAAAAGTA+GGG | - | chr4_1:81830809-81830828 | None:intergenic | 25.0% |
| ! | TTATGGTTTATGACAAAAGT+AGG | - | chr4_1:81830810-81830829 | None:intergenic | 25.0% |
| !!! | TCAAACACGTTTTTTTTTCA+AGG | - | chr4_1:81830867-81830886 | None:intergenic | 25.0% |
| ! | AAACCATTATCAACTGAAAA+TGG | - | chr4_1:81830899-81830918 | None:intergenic | 25.0% |
| ! | ATGTCATTAACATTGTTGAT+TGG | + | chr4_1:81831150-81831169 | Msa0577460:three_prime_UTR | 25.0% |
| ! | TAGAAAGTGATTATTAGGAA+GGG | - | chr4_1:81831307-81831326 | None:intergenic | 25.0% |
| ! | TTAGAAAGTGATTATTAGGA+AGG | - | chr4_1:81831308-81831327 | None:intergenic | 25.0% |
| !! | CTAACAGAAGTATTATGGAA+AGG | - | chr4_1:81828113-81828132 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | - | chr4_1:81828221-81828240 | None:intergenic | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr4_1:81828392-81828411 | Msa0577460:CDS | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | + | chr4_1:81828410-81828429 | Msa0577460:CDS | 30.0% | |
| TTTACGTATTCCTGTACATT+TGG | + | chr4_1:81828784-81828803 | Msa0577460:intron | 30.0% | |
| TACTTACAATTGAGTATGGA+GGG | - | chr4_1:81828818-81828837 | None:intergenic | 30.0% | |
| ATACTTACAATTGAGTATGG+AGG | - | chr4_1:81828819-81828838 | None:intergenic | 30.0% | |
| CCAAAATACAAGCAAAACTT+AGG | - | chr4_1:81828919-81828938 | None:intergenic | 30.0% | |
| ! | CCTAAGTTTTGCTTGTATTT+TGG | + | chr4_1:81828916-81828935 | Msa0577460:intron | 30.0% |
| AAAAAGGTAGTCATATTTGG+TGG | - | chr4_1:81828943-81828962 | None:intergenic | 30.0% | |
| AGCAAAAAGGTAGTCATATT+TGG | - | chr4_1:81828946-81828965 | None:intergenic | 30.0% | |
| AACATTTACTGAATCATAGC+TGG | + | chr4_1:81829024-81829043 | Msa0577460:intron | 30.0% | |
| TTCAAGAATCATTCATGAGT+AGG | - | chr4_1:81829179-81829198 | None:intergenic | 30.0% | |
| AATGATTCTTGAAAATGAGG+AGG | + | chr4_1:81829186-81829205 | Msa0577460:intron | 30.0% | |
| AATTTCAGTAGCAGCAAATT+TGG | + | chr4_1:81829283-81829302 | Msa0577460:CDS | 30.0% | |
| GTTGGGTAAGTCTATATATA+TGG | + | chr4_1:81829443-81829462 | Msa0577460:intron | 30.0% | |
| TGTTGATATAAAGCAATCGT+AGG | - | chr4_1:81829482-81829501 | None:intergenic | 30.0% | |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | + | chr4_1:81829704-81829723 | Msa0577460:CDS | 30.0% |
| GTGAAACAACTAAATCTTTC+AGG | - | chr4_1:81830045-81830064 | None:intergenic | 30.0% | |
| CTGAAAAGACAAATGGAATT+GGG | + | chr4_1:81830241-81830260 | Msa0577460:CDS | 30.0% | |
| CTTTATTGAACATGACAAGA+TGG | + | chr4_1:81830280-81830299 | Msa0577460:CDS | 30.0% | |
| AAGAAATAAACTTGATGCTG+TGG | + | chr4_1:81830332-81830351 | Msa0577460:CDS | 30.0% | |
| !! | ACACCTTTTTCATACTTTAG+CGG | + | chr4_1:81830357-81830376 | Msa0577460:CDS | 30.0% |
| AACAATACTGCTAATTTGAC+TGG | - | chr4_1:81830732-81830751 | None:intergenic | 30.0% | |
| TATTCACTTGCAACAATTAC+TGG | + | chr4_1:81831006-81831025 | Msa0577460:three_prime_UTR | 30.0% | |
| TGCACTTCTCTAGATAATTT+AGG | - | chr4_1:81831125-81831144 | None:intergenic | 30.0% | |
| !! | TTGATTGGTCTTAAAATCCA+AGG | + | chr4_1:81831165-81831184 | Msa0577460:three_prime_UTR | 30.0% |
| TGGAAAGGAACTTGAAGAAA+GGG | - | chr4_1:81828098-81828117 | None:intergenic | 35.0% | |
| ATGGAAAGGAACTTGAAGAA+AGG | - | chr4_1:81828099-81828118 | None:intergenic | 35.0% | |
| ATACAAAACCCAGTTCTCAA+AGG | + | chr4_1:81828276-81828295 | Msa0577460:CDS | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr4_1:81828386-81828405 | Msa0577460:CDS | 35.0% |
| TTAGCAGGTTAAGGAAAGTT+GGG | + | chr4_1:81828502-81828521 | Msa0577460:CDS | 35.0% | |
| AAAGTTGGGGCTATCATATT+AGG | + | chr4_1:81828516-81828535 | Msa0577460:CDS | 35.0% | |
| AAGTTGGGGCTATCATATTA+GGG | + | chr4_1:81828517-81828536 | Msa0577460:CDS | 35.0% | |
| CTTCTTACTTAATGTGAGCT+TGG | + | chr4_1:81828635-81828654 | Msa0577460:intron | 35.0% | |
| CTTATCATGTATTTGCCTAG+CGG | + | chr4_1:81828718-81828737 | Msa0577460:intron | 35.0% | |
| !!! | AATCATAGCTGGCCTTTTTA+TGG | + | chr4_1:81829035-81829054 | Msa0577460:intron | 35.0% |
| TCATTTGATATTTCTCTCGG+TGG | - | chr4_1:81829129-81829148 | None:intergenic | 35.0% | |
| CTACTGAGTTCATACTTGAA+GGG | - | chr4_1:81829352-81829371 | None:intergenic | 35.0% | |
| ACTACTGAGTTCATACTTGA+AGG | - | chr4_1:81829353-81829372 | None:intergenic | 35.0% | |
| TCAAGTATGAACTCAGTAGT+AGG | + | chr4_1:81829353-81829372 | Msa0577460:CDS | 35.0% | |
| AATGTGCAACATTGTTTGTG+TGG | + | chr4_1:81829556-81829575 | Msa0577460:intron | 35.0% | |
| !!! | TTGTTTGTGTGGTTTTGTAC+AGG | + | chr4_1:81829567-81829586 | Msa0577460:intron | 35.0% |
| TATGTTCTTGAAACCATAGC+AGG | + | chr4_1:81829620-81829639 | Msa0577460:CDS | 35.0% | |
| GCATCAAAGTATATCCCAAA+AGG | + | chr4_1:81829674-81829693 | Msa0577460:CDS | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | + | chr4_1:81829677-81829696 | Msa0577460:CDS | 35.0% | |
| GGACTAAGAGGAAAAAGATT+AGG | + | chr4_1:81829725-81829744 | Msa0577460:CDS | 35.0% | |
| ! | GTGAGACTGTACTACAATTT+TGG | + | chr4_1:81829752-81829771 | Msa0577460:CDS | 35.0% |
| AGCTACACCTAAAAACGTTA+AGG | + | chr4_1:81829804-81829823 | Msa0577460:CDS | 35.0% | |
| ! | GTCAAGTACGGATACTTTTA+AGG | + | chr4_1:81829852-81829871 | Msa0577460:intron | 35.0% |
| TTTGTCAAAATCAGGCAAAG+AGG | + | chr4_1:81829911-81829930 | Msa0577460:intron | 35.0% | |
| CAACAAGAAACACCCAAAAT+TGG | + | chr4_1:81830096-81830115 | Msa0577460:CDS | 35.0% | |
| CAAGGTAGCATCTTAATTGT+AGG | + | chr4_1:81830182-81830201 | Msa0577460:intron | 35.0% | |
| TTGTAGGAGAAAATGGAGTA+TGG | + | chr4_1:81830198-81830217 | Msa0577460:intron | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | + | chr4_1:81830240-81830259 | Msa0577460:CDS | 35.0% | |
| ATGACAAGATGGTCACAAAA+TGG | + | chr4_1:81830291-81830310 | Msa0577460:CDS | 35.0% | |
| TGACAAGATGGTCACAAAAT+GGG | + | chr4_1:81830292-81830311 | Msa0577460:CDS | 35.0% | |
| ! | ATGCCATTTGGAATTTGCTT+TGG | + | chr4_1:81830438-81830457 | Msa0577460:CDS | 35.0% |
| !! | ATTTGCTTTGGAGGTTTGAA+AGG | + | chr4_1:81830450-81830469 | Msa0577460:CDS | 35.0% |
| !!! | GTGCCATTTTCAGTTGATAA+TGG | + | chr4_1:81830893-81830912 | Msa0577460:intron | 35.0% |
| CAAGTGAATATTTCGACTCT+CGG | - | chr4_1:81830996-81831015 | None:intergenic | 35.0% | |
| TCTTCAACTCTATTACTAGC+AGG | - | chr4_1:81831053-81831072 | None:intergenic | 35.0% | |
| CATAGAAACTTGTACCAACA+AGG | + | chr4_1:81831199-81831218 | Msa0577460:three_prime_UTR | 35.0% | |
| TACCAACAAGGTGATAGAAT+AGG | + | chr4_1:81831211-81831230 | Msa0577460:three_prime_UTR | 35.0% | |
| ATCCTATTCTATCACCTTGT+TGG | - | chr4_1:81831216-81831235 | None:intergenic | 35.0% | |
| TCCGAAAAATTTGAGAGTCT+TGG | + | chr4_1:81831246-81831265 | Msa0577460:three_prime_UTR | 35.0% | |
| ! | CCCAAGACTCTCAAATTTTT+CGG | - | chr4_1:81831250-81831269 | None:intergenic | 35.0% |
| CCGAAAAATTTGAGAGTCTT+GGG | + | chr4_1:81831247-81831266 | Msa0577460:three_prime_UTR | 35.0% | |
| AAGTGATTATTAGGAAGGGA+GGG | - | chr4_1:81831303-81831322 | None:intergenic | 35.0% | |
| AAAGTGATTATTAGGAAGGG+AGG | - | chr4_1:81831304-81831323 | None:intergenic | 35.0% | |
| ! | AGGATGTTGGAAGCATAGAA+GGG | - | chr4_1:81828143-81828162 | None:intergenic | 40.0% |
| ! | AAGGATGTTGGAAGCATAGA+AGG | - | chr4_1:81828144-81828163 | None:intergenic | 40.0% |
| TTCTATGCTTCCAACATCCT+TGG | + | chr4_1:81828143-81828162 | Msa0577460:CDS | 40.0% | |
| ! | CTAAGACTCCTTTGAGAACT+GGG | - | chr4_1:81828287-81828306 | None:intergenic | 40.0% |
| ! | TCTAAGACTCCTTTGAGAAC+TGG | - | chr4_1:81828288-81828307 | None:intergenic | 40.0% |
| AGTTCTCAAAGGAGTCTTAG+AGG | + | chr4_1:81828287-81828306 | Msa0577460:CDS | 40.0% | |
| ATAGAGCTGATCAAGAGAGA+AGG | + | chr4_1:81828337-81828356 | Msa0577460:CDS | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | + | chr4_1:81828432-81828451 | Msa0577460:CDS | 40.0% | |
| GTTAGCAGGTTAAGGAAAGT+TGG | + | chr4_1:81828501-81828520 | Msa0577460:CDS | 40.0% | |
| TAGCAGGTTAAGGAAAGTTG+GGG | + | chr4_1:81828503-81828522 | Msa0577460:CDS | 40.0% | |
| ACGGCTCTCTAACCATAAAA+AGG | - | chr4_1:81829050-81829069 | None:intergenic | 40.0% | |
| ! | TTTTATGGTTAGAGAGCCGT+AGG | + | chr4_1:81829050-81829069 | Msa0577460:intron | 40.0% |
| TAGCAAAAAGGCTCAACCTA+CGG | - | chr4_1:81829069-81829088 | None:intergenic | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | + | chr4_1:81829229-81829248 | Msa0577460:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | - | chr4_1:81829242-81829261 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | + | chr4_1:81829242-81829261 | Msa0577460:CDS | 40.0% | |
| !! | TTGTGGTTCAAGTAGTGGAT+CGG | + | chr4_1:81829259-81829278 | Msa0577460:CDS | 40.0% |
| ! | CATACTTGAAGGGCATAAGA+TGG | - | chr4_1:81829342-81829361 | None:intergenic | 40.0% |
| GTGTAATTCCAATTAGCCCA+AGG | + | chr4_1:81829411-81829430 | Msa0577460:CDS | 40.0% | |
| AAATTGCGTTCGCAATGCAT+GGG | - | chr4_1:81829507-81829526 | None:intergenic | 40.0% | |
| AAAATTGCGTTCGCAATGCA+TGG | - | chr4_1:81829508-81829527 | None:intergenic | 40.0% | |
| ! | TTTTGTACAGGCCAATTTGC+AGG | + | chr4_1:81829579-81829598 | Msa0577460:intron | 40.0% |
| AACATAAGCAGCATCCGATA+CGG | - | chr4_1:81829606-81829625 | None:intergenic | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | - | chr4_1:81829691-81829710 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | - | chr4_1:81829692-81829711 | None:intergenic | 40.0% |
| !! | CTAAAGAAAGACGGACTAAG+AGG | + | chr4_1:81829713-81829732 | Msa0577460:CDS | 40.0% |
| ! | ATCTTTCAGGTATGCGTTCA+AGG | - | chr4_1:81830032-81830051 | None:intergenic | 40.0% |
| TGTTTCACCAGTGAAAAGCT+TGG | + | chr4_1:81830057-81830076 | Msa0577460:CDS | 40.0% | |
| CTGCAAGCTGAAAAGACAAA+TGG | + | chr4_1:81830234-81830253 | Msa0577460:CDS | 40.0% | |
| ACGCCGCTAAAGTATGAAAA+AGG | - | chr4_1:81830363-81830382 | None:intergenic | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr4_1:81830413-81830432 | Msa0577460:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | + | chr4_1:81830414-81830433 | Msa0577460:CDS | 40.0% | |
| ! | TATGAAAAGGGCATGCCATT+TGG | + | chr4_1:81830426-81830445 | Msa0577460:CDS | 40.0% |
| CCTCCAAAGCAAATTCCAAA+TGG | - | chr4_1:81830444-81830463 | None:intergenic | 40.0% | |
| ! | CCATTTGGAATTTGCTTTGG+AGG | + | chr4_1:81830441-81830460 | Msa0577460:CDS | 40.0% |
| CACACTTCTAACTTTCGAAG+CGG | - | chr4_1:81830543-81830562 | None:intergenic | 40.0% | |
| ! | ATCTGGAATTGACAGTATGC+TGG | + | chr4_1:81830597-81830616 | Msa0577460:intron | 40.0% |
| CAACAATTACTGGTGCACTT+AGG | + | chr4_1:81831016-81831035 | Msa0577460:three_prime_UTR | 40.0% | |
| TTAAAATCCAAGGTGCGACA+AGG | + | chr4_1:81831175-81831194 | Msa0577460:three_prime_UTR | 40.0% | |
| CAAACTCTCGAGTTCTTAGA+AGG | - | chr4_1:81831278-81831297 | None:intergenic | 40.0% | |
| ! | CTTCTAAGAACTCGAGAGTT+TGG | + | chr4_1:81831276-81831295 | Msa0577460:three_prime_UTR | 40.0% |
| TCAGGACAACTCTTCAATTC+TGG | + | chr4_1:81831331-81831350 | Msa0577460:three_prime_UTR | 40.0% | |
| AATCCACTAGCCAAGGATGT+TGG | - | chr4_1:81828156-81828175 | None:intergenic | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | - | chr4_1:81828163-81828182 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | + | chr4_1:81828164-81828183 | Msa0577460:CDS | 45.0% |
| TCAGCATGTGCTAATGCATC+TGG | - | chr4_1:81828318-81828337 | None:intergenic | 45.0% | |
| ! | TGAAAGAGAACCTGCTGCTT+TGG | - | chr4_1:81828364-81828383 | None:intergenic | 45.0% |
| AAAGCAGCAGGTTCTCTTTC+AGG | + | chr4_1:81828363-81828382 | Msa0577460:CDS | 45.0% | |
| AAGCAGCAGGTTCTCTTTCA+GGG | + | chr4_1:81828364-81828383 | Msa0577460:CDS | 45.0% | |
| TGGGGCTATCATATTAGGGA+AGG | + | chr4_1:81828521-81828540 | Msa0577460:CDS | 45.0% | |
| CTAGTGGTTGGAATGCTAGA+GGG | + | chr4_1:81828586-81828605 | Msa0577460:CDS | 45.0% | |
| TAGTGGTTGGAATGCTAGAG+GGG | + | chr4_1:81828587-81828606 | Msa0577460:CDS | 45.0% | |
| ACATCAGACTTTCAACCGCT+AGG | - | chr4_1:81828736-81828755 | None:intergenic | 45.0% | |
| GGAGTAGCATCCAAATGTAC+AGG | - | chr4_1:81828797-81828816 | None:intergenic | 45.0% | |
| !! | AGCCTTTTTGCTAGCTTACG+AGG | + | chr4_1:81829076-81829095 | Msa0577460:intron | 45.0% |
| GATCCTTGTGGTTCAAGTAG+TGG | + | chr4_1:81829254-81829273 | Msa0577460:CDS | 45.0% | |
| GATCCACTACTTGAACCACA+AGG | - | chr4_1:81829260-81829279 | None:intergenic | 45.0% | |
| ! | AATTTGGTGACTGTGTCGCT+TGG | + | chr4_1:81829299-81829318 | Msa0577460:CDS | 45.0% |
| GTAGGCATCAAACCAACAGT+TGG | + | chr4_1:81829371-81829390 | Msa0577460:CDS | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | - | chr4_1:81829386-81829405 | None:intergenic | 45.0% | |
| ! | TAAAGCGTCTATGCCTGCTA+TGG | - | chr4_1:81829636-81829655 | None:intergenic | 45.0% |
| ! | ACATCTGCCAAGCTTTTCAC+TGG | - | chr4_1:81830067-81830086 | None:intergenic | 45.0% |
| !! | TTTAGCGGCGTACTTGCTAT+TGG | + | chr4_1:81830372-81830391 | Msa0577460:CDS | 45.0% |
| !! | CTTGCTATTGGAGGTTATCC+TGG | + | chr4_1:81830384-81830403 | Msa0577460:CDS | 45.0% |
| ! | ATGCCCTTTTCATATCCTGC+TGG | - | chr4_1:81830420-81830439 | None:intergenic | 45.0% |
| TTCTAACTTTCGAAGCGGAG+GGG | - | chr4_1:81830538-81830557 | None:intergenic | 45.0% | |
| CTTCTAACTTTCGAAGCGGA+GGG | - | chr4_1:81830539-81830558 | None:intergenic | 45.0% | |
| ACTTCTAACTTTCGAAGCGG+AGG | - | chr4_1:81830540-81830559 | None:intergenic | 45.0% | |
| GTGAATATTTCGACTCTCGG+TGG | - | chr4_1:81830993-81831012 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTCTTTTTAATT+AGG | - | chr4_1:81829102-81829121 | None:intergenic | 5.0% |
| CTTCCAACATCCTTGGCTAG+TGG | + | chr4_1:81828150-81828169 | Msa0577460:CDS | 50.0% | |
| GGTTCTCTTTCAGGGTTGCA+TGG | + | chr4_1:81828372-81828391 | Msa0577460:CDS | 50.0% | |
| TCAGTAGTGCCAAGAGATGC+TGG | + | chr4_1:81828474-81828493 | Msa0577460:CDS | 50.0% | |
| CTAACTACGCCAGCATCTCT+TGG | - | chr4_1:81828486-81828505 | None:intergenic | 50.0% | |
| CTGGCGTAGTTAGCAGGTTA+AGG | + | chr4_1:81828493-81828512 | Msa0577460:CDS | 50.0% | |
| CTGATGTGACCACTCACTCA+GGG | - | chr4_1:81828550-81828569 | None:intergenic | 50.0% | |
| TCTGATGTGACCACTCACTC+AGG | - | chr4_1:81828551-81828570 | None:intergenic | 50.0% | |
| TGAGTGAGTGGTCACATCAG+AGG | + | chr4_1:81828550-81828569 | Msa0577460:CDS | 50.0% | |
| AGGTCTAGTGAAGCTCCTAG+TGG | + | chr4_1:81828570-81828589 | Msa0577460:CDS | 50.0% | |
| CTAGTGAAGCTCCTAGTGGT+TGG | + | chr4_1:81828574-81828593 | Msa0577460:CDS | 50.0% | |
| CCTCTAGCATTCCAACCACT+AGG | - | chr4_1:81828588-81828607 | None:intergenic | 50.0% | |
| CCTAGTGGTTGGAATGCTAG+AGG | + | chr4_1:81828585-81828604 | Msa0577460:CDS | 50.0% | |
| AGTGGTTGGAATGCTAGAGG+GGG | + | chr4_1:81828588-81828607 | Msa0577460:CDS | 50.0% | |
| GGCCTCGTAAGCTAGCAAAA+AGG | - | chr4_1:81829081-81829100 | None:intergenic | 50.0% | |
| GAGTAGGCAGAATGAAGCCA+TGG | - | chr4_1:81829163-81829182 | None:intergenic | 50.0% | |
| ! | TCGCTTGGTACTGAAACCGA+CGG | + | chr4_1:81829314-81829333 | Msa0577460:CDS | 50.0% |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr4_1:81829389-81829408 | Msa0577460:CDS | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | - | chr4_1:81829422-81829441 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | - | chr4_1:81829430-81829449 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | - | chr4_1:81829431-81829450 | None:intergenic | 50.0% | |
| GCCAATTTGCAGGACCGTAT+CGG | + | chr4_1:81829589-81829608 | Msa0577460:CDS | 50.0% | |
| TCCGATACGGTCCTGCAAAT+TGG | - | chr4_1:81829593-81829612 | None:intergenic | 50.0% | |
| !!! | CAGGCAAAGAGGTGCTGTTT+TGG | + | chr4_1:81829922-81829941 | Msa0577460:intron | 50.0% |
| CAGCTTGCAGCATGAGATCT+TGG | - | chr4_1:81830224-81830243 | None:intergenic | 50.0% | |
| TCTAACTTTCGAAGCGGAGG+GGG | - | chr4_1:81830537-81830556 | None:intergenic | 50.0% | |
| TCTATGACCTTGTCGCACCT+TGG | - | chr4_1:81831185-81831204 | None:intergenic | 50.0% | |
| GAGAGAAGGACCAAAGCAGC+AGG | + | chr4_1:81828351-81828370 | Msa0577460:CDS | 55.0% | |
| ! | GCAGGCTCTTTTGCACTGCT+TGG | + | chr4_1:81828450-81828469 | Msa0577460:CDS | 55.0% |
| GAGATGCTGGCGTAGTTAGC+AGG | + | chr4_1:81828487-81828506 | Msa0577460:CDS | 55.0% | |
| ATGTGACCACTCACTCAGGG+TGG | - | chr4_1:81828547-81828566 | None:intergenic | 55.0% | |
| TGGAATGCTAGAGGGGGACA+AGG | + | chr4_1:81828594-81828613 | Msa0577460:CDS | 55.0% | |
| TGCTAGAGGGGGACAAGGAA+AGG | + | chr4_1:81828599-81828618 | Msa0577460:CDS | 55.0% | |
| AGGGCATAAGATGGAGCCGT+CGG | - | chr4_1:81829333-81829352 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | + | chr4_1:81829425-81829444 | Msa0577460:CDS | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | + | chr4_1:81829426-81829445 | Msa0577460:CDS | 55.0% | |
| !! | AGCGGCGTACTTGCTATTGG+AGG | + | chr4_1:81830375-81830394 | Msa0577460:CDS | 55.0% |
| CCTGCTGGAACAATGACTCC+AGG | - | chr4_1:81830405-81830424 | None:intergenic | 55.0% | |
| CCTGGAGTCATTGTTCCAGC+AGG | + | chr4_1:81830402-81830421 | Msa0577460:CDS | 55.0% | |
| GGAAGGCCACCCTGAGTGAG+TGG | + | chr4_1:81828538-81828557 | Msa0577460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81828070 | 81831373 | 81828070 | ID=Msa0577460;Name=Msa0577460 |
| chr4_1 | mRNA | 81828070 | 81831373 | 81828070 | ID=Msa0577460-mRNA-1;Parent=Msa0577460;Name=Msa0577460-mRNA-1;_AED=0.43;_eAED=0.43;_QI=5|1|1|1|0.66|0.57|7|342|515 |
| chr4_1 | exon | 81828070 | 81828620 | 81828070 | ID=Msa0577460-mRNA-1:exon:29511;Parent=Msa0577460-mRNA-1 |
| chr4_1 | exon | 81829236 | 81829447 | 81829236 | ID=Msa0577460-mRNA-1:exon:29512;Parent=Msa0577460-mRNA-1 |
| chr4_1 | exon | 81829589 | 81829825 | 81829589 | ID=Msa0577460-mRNA-1:exon:29513;Parent=Msa0577460-mRNA-1 |
| chr4_1 | exon | 81829925 | 81830117 | 81829925 | ID=Msa0577460-mRNA-1:exon:29514;Parent=Msa0577460-mRNA-1 |
| chr4_1 | exon | 81830204 | 81830564 | 81830204 | ID=Msa0577460-mRNA-1:exon:29515;Parent=Msa0577460-mRNA-1 |
| chr4_1 | exon | 81831000 | 81831112 | 81831000 | ID=Msa0577460-mRNA-1:exon:29516;Parent=Msa0577460-mRNA-1 |
| chr4_1 | exon | 81831146 | 81831373 | 81831146 | ID=Msa0577460-mRNA-1:exon:29517;Parent=Msa0577460-mRNA-1 |
| chr4_1 | five_prime_UTR | 81828070 | 81828074 | 81828070 | ID=Msa0577460-mRNA-1:five_prime_utr;Parent=Msa0577460-mRNA-1 |
| chr4_1 | CDS | 81828075 | 81828620 | 81828075 | ID=Msa0577460-mRNA-1:cds;Parent=Msa0577460-mRNA-1 |
| chr4_1 | CDS | 81829236 | 81829447 | 81829236 | ID=Msa0577460-mRNA-1:cds;Parent=Msa0577460-mRNA-1 |
| chr4_1 | CDS | 81829589 | 81829825 | 81829589 | ID=Msa0577460-mRNA-1:cds;Parent=Msa0577460-mRNA-1 |
| chr4_1 | CDS | 81829925 | 81830117 | 81829925 | ID=Msa0577460-mRNA-1:cds;Parent=Msa0577460-mRNA-1 |
| chr4_1 | CDS | 81830204 | 81830563 | 81830204 | ID=Msa0577460-mRNA-1:cds;Parent=Msa0577460-mRNA-1 |
| chr4_1 | three_prime_UTR | 81830564 | 81830564 | 81830564 | ID=Msa0577460-mRNA-1:three_prime_utr;Parent=Msa0577460-mRNA-1 |
| chr4_1 | three_prime_UTR | 81831000 | 81831112 | 81831000 | ID=Msa0577460-mRNA-1:three_prime_utr;Parent=Msa0577460-mRNA-1 |
| chr4_1 | three_prime_UTR | 81831146 | 81831373 | 81831146 | ID=Msa0577460-mRNA-1:three_prime_utr;Parent=Msa0577460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
