Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577810 | PNX73943.1 | 88.760 | 516 | 57 | 1 | 1 | 515 | 1 | 516 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577810 | sp|A0A1P8B760|AMI4G_ARATH | 61.089 | 496 | 179 | 5 | 18 | 508 | 22 | 508 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577810 | A0A2K3L609 | 88.760 | 516 | 57 | 1 | 1 | 515 | 1 | 516 | 0.0 | 940 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0504020 | Msa0577810 | 0.801886 | 7.287313e-49 | -8.615850e-47 |
| Msa0577460 | Msa0577810 | 0.950732 | 8.960899e-109 | -8.615850e-47 |
| Msa0577810 | Msa0605170 | 0.815803 | 7.667193e-52 | -8.615850e-47 |
| Msa0577810 | Msa1306800 | 0.955202 | 5.210394e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577810 | MtrunA17_Chr8g0377691 | 87.961 | 515 | 62 | 0 | 1 | 515 | 1 | 515 | 0.0 | 919 |
| Msa0577810 | MtrunA17_Chr8g0377651 | 85.687 | 517 | 68 | 2 | 1 | 515 | 3 | 515 | 0.0 | 907 |
| Msa0577810 | MtrunA17_Chr8g0377701 | 86.965 | 514 | 66 | 1 | 1 | 513 | 1 | 514 | 0.0 | 906 |
| Msa0577810 | MtrunA17_Chr8g0377641 | 85.659 | 516 | 70 | 2 | 1 | 515 | 1 | 513 | 0.0 | 901 |
| Msa0577810 | MtrunA17_Chr8g0377681 | 83.757 | 511 | 82 | 1 | 6 | 515 | 3 | 513 | 0.0 | 876 |
| Msa0577810 | MtrunA17_Chr4g0037521 | 58.847 | 503 | 196 | 8 | 13 | 508 | 9 | 507 | 0.0 | 561 |
| Msa0577810 | MtrunA17_Chr4g0037491 | 57.566 | 304 | 117 | 7 | 205 | 499 | 1 | 301 | 1.13e-113 | 338 |
| Msa0577810 | MtrunA17_Chr8g0377661 | 89.744 | 78 | 8 | 0 | 438 | 515 | 1 | 78 | 3.50e-42 | 145 |
| Msa0577810 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 105 | 196 | 2 | 95 | 6.35e-30 | 112 |
| Msa0577810 | MtrunA17_Chr8g0385461 | 32.129 | 249 | 154 | 6 | 40 | 287 | 162 | 396 | 7.29e-30 | 123 |
| Msa0577810 | MtrunA17_Chr3g0097801 | 33.086 | 269 | 171 | 5 | 44 | 309 | 46 | 308 | 5.13e-27 | 114 |
| Msa0577810 | MtrunA17_Chr2g0279961 | 29.617 | 287 | 189 | 6 | 32 | 313 | 121 | 399 | 4.21e-23 | 103 |
| Msa0577810 | MtrunA17_Chr3g0130801 | 25.455 | 495 | 320 | 20 | 40 | 515 | 200 | 664 | 2.81e-19 | 91.3 |
| Msa0577810 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 2 | 140 | 257 | 63 | 176 | 2.02e-14 | 75.5 |
| Msa0577810 | MtrunA17_Chr8g0384851 | 28.516 | 256 | 166 | 6 | 26 | 271 | 117 | 365 | 1.28e-12 | 70.5 |
| Msa0577810 | MtrunA17_Chr4g0050371 | 34.507 | 142 | 87 | 2 | 138 | 278 | 107 | 243 | 8.16e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577810 | AT4G34880.2 | 61.089 | 496 | 179 | 5 | 18 | 508 | 22 | 508 | 0.0 | 568 |
| Msa0577810 | AT4G34880.1 | 53.737 | 495 | 171 | 5 | 18 | 508 | 22 | 462 | 1.97e-175 | 502 |
| Msa0577810 | AT5G07360.1 | 32.510 | 243 | 153 | 5 | 40 | 281 | 204 | 436 | 2.61e-28 | 119 |
| Msa0577810 | AT5G07360.3 | 32.510 | 243 | 153 | 5 | 40 | 281 | 204 | 436 | 2.61e-28 | 119 |
| Msa0577810 | AT3G25660.1 | 26.559 | 497 | 285 | 16 | 52 | 500 | 57 | 521 | 6.16e-26 | 111 |
| Msa0577810 | AT5G07360.2 | 32.099 | 243 | 147 | 6 | 40 | 281 | 204 | 429 | 3.29e-25 | 110 |
| Msa0577810 | AT5G64440.1 | 23.611 | 504 | 324 | 15 | 35 | 508 | 125 | 597 | 3.81e-20 | 94.4 |
| Msa0577810 | AT1G08980.1 | 41.176 | 119 | 64 | 2 | 140 | 257 | 64 | 177 | 2.46e-15 | 78.6 |
| Msa0577810 | AT5G09420.1 | 38.462 | 117 | 66 | 2 | 138 | 253 | 105 | 216 | 2.56e-11 | 66.6 |
Find 141 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATATACTCACCAATTT+TGG | 0.124167 | 4_1:+82111969 | None:intergenic |
| GTGAGACTGTACTACAATTT+TGG | 0.196580 | 4_1:-82112326 | Msa0577810:CDS |
| AAAATTAGAAAGTGATTATT+AGG | 0.221760 | 4_1:+82110769 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.222876 | 4_1:-82113692 | Msa0577810:CDS |
| AAAGTTGGGGCTATCATATT+AGG | 0.223239 | 4_1:-82113562 | Msa0577810:CDS |
| GTGAAACAACTAAATCTTTC+AGG | 0.228755 | 4_1:+82112036 | None:intergenic |
| AAAGCAGCAGGTTCTCTTTC+AGG | 0.230296 | 4_1:-82113715 | Msa0577810:CDS |
| TATTCACTTGCAACAATTAC+TGG | 0.233920 | 4_1:-82111072 | Msa0577810:three_prime_UTR |
| TCAGGACAACTCTTCAATTC+TGG | 0.254114 | 4_1:-82110747 | Msa0577810:three_prime_UTR |
| AATTTCAGTAGCAGCAAATT+TGG | 0.264283 | 4_1:-82112795 | Msa0577810:CDS |
| CAGGCAAAGAGGTGCTGTTT+TGG | 0.279043 | 4_1:-82112156 | Msa0577810:CDS |
| ATGACAAGATGGTCACAAAA+TGG | 0.286173 | 4_1:-82111787 | Msa0577810:CDS |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.286345 | 4_1:+82112659 | None:intergenic |
| TTGATGTTAACTGCTTTCTT+TGG | 0.290637 | 4_1:+82113860 | None:intergenic |
| TGTAACTAACAGAAGTATTA+TGG | 0.292613 | 4_1:+82113963 | None:intergenic |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+82112389 | None:intergenic |
| CAACAAGAAACACCCAAAAT+TGG | 0.311801 | 4_1:-82111982 | Msa0577810:intron |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:+82113679 | None:intergenic |
| CAGCTTGCAGCATGAGATCT+TGG | 0.321727 | 4_1:+82111857 | None:intergenic |
| ATCTTAATTGTAGGAGAAAA+TGG | 0.323871 | 4_1:-82111887 | Msa0577810:intron |
| GATTGTTCAAGTTATAATTT+AGG | 0.332997 | 4_1:+82110978 | None:intergenic |
| TCCGATACGGTCCTGCAAAT+TGG | 0.338092 | 4_1:+82112488 | None:intergenic |
| CCATTTGGAATTTGCTTTGG+AGG | 0.345917 | 4_1:-82111637 | Msa0577810:CDS |
| ATCCTATTCTATCACCTTGT+TGG | 0.345923 | 4_1:+82110865 | None:intergenic |
| AAGGATGTTGGAAGCATAGA+AGG | 0.345981 | 4_1:+82113937 | None:intergenic |
| TACCCAACTGTGTCTTGCCT+TGG | 0.349156 | 4_1:+82112650 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.352248 | 4_1:-82111838 | Msa0577810:CDS |
| CTTCTAAGAACTCGAGAGTT+TGG | 0.352968 | 4_1:-82110802 | Msa0577810:three_prime_UTR |
| ACGCCGCTAAAGTATGAAAA+AGG | 0.370786 | 4_1:+82111718 | None:intergenic |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.375767 | 4_1:+82112651 | None:intergenic |
| TGAAAGAGAACCTGCTGCTT+TGG | 0.377922 | 4_1:+82113717 | None:intergenic |
| ATGCCATTTGGAATTTGCTT+TGG | 0.378888 | 4_1:-82111640 | Msa0577810:CDS |
| ATCTTTCAGGTATGCGTTCA+AGG | 0.379389 | 4_1:+82112049 | None:intergenic |
| TTTAGCGGCGTACTTGCTAT+TGG | 0.387009 | 4_1:-82111706 | Msa0577810:CDS |
| TCTAAGACTCCTTTGAGAAC+TGG | 0.389957 | 4_1:+82113793 | None:intergenic |
| TATGAAAAGGGCATGCCATT+TGG | 0.394570 | 4_1:-82111652 | Msa0577810:CDS |
| TCAGCATGTGCTAATGCATC+TGG | 0.402283 | 4_1:+82113763 | None:intergenic |
| CTTGCTATTGGAGGTTATCC+TGG | 0.409552 | 4_1:-82111694 | Msa0577810:CDS |
| TTAGAAAGTGATTATTAGGA+AGG | 0.413247 | 4_1:+82110773 | None:intergenic |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:-82113668 | Msa0577810:CDS |
| TTAGCAGGTTAAGGAAAGTT+GGG | 0.419376 | 4_1:-82113576 | Msa0577810:CDS |
| AAGCAGCAGGTTCTCTTTCA+GGG | 0.420978 | 4_1:-82113714 | Msa0577810:CDS |
| TTCTATGCTTCCAACATCCT+TGG | 0.422281 | 4_1:-82113935 | Msa0577810:CDS |
| TTGTAGGAGAAAATGGAGTA+TGG | 0.423860 | 4_1:-82111880 | Msa0577810:intron |
| CTAAGACTCCTTTGAGAACT+GGG | 0.435475 | 4_1:+82113794 | None:intergenic |
| CTGAAAAGACAAATGGAATT+GGG | 0.436484 | 4_1:-82111837 | Msa0577810:CDS |
| GTTAGCAGGTTAAGGAAAGT+TGG | 0.441622 | 4_1:-82113577 | Msa0577810:CDS |
| CAAACTCTCGAGTTCTTAGA+AGG | 0.441654 | 4_1:+82110803 | None:intergenic |
| CTGGCGTAGTTAGCAGGTTA+AGG | 0.445156 | 4_1:-82113585 | Msa0577810:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.446045 | 4_1:+82112839 | None:intergenic |
| AAGTTGGGGCTATCATATTA+GGG | 0.451734 | 4_1:-82113561 | Msa0577810:CDS |
| CTAACTACGCCAGCATCTCT+TGG | 0.471908 | 4_1:+82113595 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4_1:-82112652 | Msa0577810:intron |
| ACTACTGAGTTCATACTTGA+AGG | 0.474985 | 4_1:+82112728 | None:intergenic |
| AGTTCTCAAAGGAGTCTTAG+AGG | 0.475499 | 4_1:-82113791 | Msa0577810:CDS |
| TGACAAGATGGTCACAAAAT+GGG | 0.477152 | 4_1:-82111786 | Msa0577810:CDS |
| TGGAAAGGAACTTGAAGAAA+GGG | 0.479173 | 4_1:+82113983 | None:intergenic |
| TCAAGTATGAACTCAGTAGT+AGG | 0.480266 | 4_1:-82112725 | Msa0577810:CDS |
| AGCGGCGTACTTGCTATTGG+AGG | 0.487808 | 4_1:-82111703 | Msa0577810:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 4_1:-82111665 | Msa0577810:CDS |
| ATTTGCTTTGGAGGTTTGAA+AGG | 0.493826 | 4_1:-82111628 | Msa0577810:CDS |
| CTGCAAGCTGAAAAGACAAA+TGG | 0.495604 | 4_1:-82111844 | Msa0577810:CDS |
| ATGTCATTAACATTGTTGAT+TGG | 0.502333 | 4_1:-82110928 | Msa0577810:three_prime_UTR |
| GAGATGCTGGCGTAGTTAGC+AGG | 0.503203 | 4_1:-82113591 | Msa0577810:CDS |
| TCAGTAGTGCCAAGAGATGC+TGG | 0.504508 | 4_1:-82113604 | Msa0577810:CDS |
| ATGGAAAGGAACTTGAAGAA+AGG | 0.510934 | 4_1:+82113982 | None:intergenic |
| CAACAATTACTGGTGCACTT+AGG | 0.511812 | 4_1:-82111062 | Msa0577810:three_prime_UTR |
| TTGATTGGTCTTAAAATCCA+AGG | 0.512602 | 4_1:-82110913 | Msa0577810:three_prime_UTR |
| TAAGCAATTTCAATTAACTT+CGG | 0.513290 | 4_1:+82111598 | None:intergenic |
| GGTTCTCTTTCAGGGTTGCA+TGG | 0.513466 | 4_1:-82113706 | Msa0577810:CDS |
| CTAAAGAAAGACGGACTAAG+AGG | 0.516133 | 4_1:-82112365 | Msa0577810:CDS |
| AAAGTGATTATTAGGAAGGG+AGG | 0.516169 | 4_1:+82110777 | None:intergenic |
| TTATAATTTAGGCTTTGTTA+CGG | 0.516303 | 4_1:+82110989 | None:intergenic |
| CCTGGAGTCATTGTTCCAGC+AGG | 0.517601 | 4_1:-82111676 | Msa0577810:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:-82112404 | Msa0577810:CDS |
| CATACTTGAAGGGCATAAGA+TGG | 0.523653 | 4_1:+82112739 | None:intergenic |
| CTTCCAACATCCTTGGCTAG+TGG | 0.524164 | 4_1:-82113928 | Msa0577810:CDS |
| TACCAACAAGGTGATAGAAT+AGG | 0.524915 | 4_1:-82110867 | Msa0577810:three_prime_UTR |
| GCCAATTTGCAGGACCGTAT+CGG | 0.524930 | 4_1:-82112489 | Msa0577810:CDS |
| TAGAAAGTGATTATTAGGAA+GGG | 0.528813 | 4_1:+82110774 | None:intergenic |
| TCTGATGTGACCACTCACTC+AGG | 0.535215 | 4_1:+82113530 | None:intergenic |
| CCTCCAAAGCAAATTCCAAA+TGG | 0.541500 | 4_1:+82111637 | None:intergenic |
| TCTATGACCTTGTCGCACCT+TGG | 0.542595 | 4_1:+82110896 | None:intergenic |
| GAGAGAAGGACCAAAGCAGC+AGG | 0.543175 | 4_1:-82113727 | Msa0577810:CDS |
| CTACTGAGTTCATACTTGAA+GGG | 0.545399 | 4_1:+82112729 | None:intergenic |
| TCTTCAACTCTATTACTAGC+AGG | 0.546763 | 4_1:+82111028 | None:intergenic |
| GATCCTTGTGGTTCAAGTAG+TGG | 0.552399 | 4_1:-82112824 | Msa0577810:CDS |
| GATAAGCTAAACACTACTGC+AGG | 0.552473 | 4_1:-82113646 | Msa0577810:CDS |
| TATGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:-82112458 | Msa0577810:CDS |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:-82113914 | Msa0577810:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4_1:-82112653 | Msa0577810:CDS |
| CTTTATTGAACATGACAAGA+TGG | 0.556585 | 4_1:-82111798 | Msa0577810:CDS |
| CCTGCTGGAACAATGACTCC+AGG | 0.556829 | 4_1:+82111676 | None:intergenic |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:-82112689 | Msa0577810:CDS |
| AATCCACTAGCCAAGGATGT+TGG | 0.560632 | 4_1:+82113925 | None:intergenic |
| CTAGTGAAGCTCCTAGTGGT+TGG | 0.561059 | 4_1:-82113504 | Msa0577810:CDS |
| TCTAACTTTCGAAGCGGAGG+GGG | 0.561714 | 4_1:+82111544 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.561856 | 4_1:-82111664 | Msa0577810:CDS |
| CTAGTGGTTGGAATGCTAGA+GGG | 0.566778 | 4_1:-82113492 | Msa0577810:CDS |
| TTTGTCAAAATCAGGCAAAG+AGG | 0.571847 | 4_1:-82112167 | Msa0577810:intron |
| TAAAGCGTCTATGCCTGCTA+TGG | 0.572957 | 4_1:+82112445 | None:intergenic |
| CTTCTAACTTTCGAAGCGGA+GGG | 0.575136 | 4_1:+82111542 | None:intergenic |
| GTTTCAACTTTCAAGACACA+TGG | 0.578997 | 4_1:-82114022 | None:intergenic |
| TGTTTCACCAGTGAAAAGCT+TGG | 0.582494 | 4_1:-82112021 | Msa0577810:CDS |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:-82112374 | Msa0577810:CDS |
| AAGAAATAAACTTGATGCTG+TGG | 0.585547 | 4_1:-82111746 | Msa0577810:CDS |
| AACATAAGCAGCATCCGATA+CGG | 0.585738 | 4_1:+82112475 | None:intergenic |
| AAGTGATTATTAGGAAGGGA+GGG | 0.586814 | 4_1:+82110778 | None:intergenic |
| CCTAGTGGTTGGAATGCTAG+AGG | 0.590749 | 4_1:-82113493 | Msa0577810:CDS |
| ACTTCTAACTTTCGAAGCGG+AGG | 0.591701 | 4_1:+82111541 | None:intergenic |
| TTCTAACTTTCGAAGCGGAG+GGG | 0.592564 | 4_1:+82111543 | None:intergenic |
| TAGTGGTTGGAATGCTAGAG+GGG | 0.595776 | 4_1:-82113491 | Msa0577810:CDS |
| GATTGAGAATCCACTAGCCA+AGG | 0.599130 | 4_1:+82113918 | None:intergenic |
| CTGATGTGACCACTCACTCA+GGG | 0.604738 | 4_1:+82113531 | None:intergenic |
| TTGTGGTTCAAGTAGTGGAT+CGG | 0.605165 | 4_1:-82112819 | Msa0577810:CDS |
| AATTTGGTGACTGTGTCGCT+TGG | 0.605301 | 4_1:-82112779 | Msa0577810:CDS |
| ATACAAAACCCAGTTCTCAA+AGG | 0.608040 | 4_1:-82113802 | Msa0577810:CDS |
| CACACTTCTAACTTTCGAAG+CGG | 0.611010 | 4_1:+82111538 | None:intergenic |
| CCTCTAGCATTCCAACCACT+AGG | 0.611184 | 4_1:+82113493 | None:intergenic |
| GGAAGGCCACCCTGAGTGAG+TGG | 0.620599 | 4_1:-82113540 | Msa0577810:CDS |
| ATAGAGCTGATCAAGAGAGA+AGG | 0.622629 | 4_1:-82113741 | Msa0577810:CDS |
| AACATTGATCAAATTATCAG+TGG | 0.625881 | 4_1:-82112113 | Msa0577810:CDS |
| TAGCAGGTTAAGGAAAGTTG+GGG | 0.626810 | 4_1:-82113575 | Msa0577810:CDS |
| CATAGAAACTTGTACCAACA+AGG | 0.627359 | 4_1:-82110879 | Msa0577810:three_prime_UTR |
| TGGGGCTATCATATTAGGGA+AGG | 0.629817 | 4_1:-82113557 | Msa0577810:CDS |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:-82112401 | Msa0577810:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:+82112695 | None:intergenic |
| CTAACAGAAGTATTATGGAA+AGG | 0.639092 | 4_1:+82113968 | None:intergenic |
| AGGGCATAAGATGGAGCCGT+CGG | 0.639961 | 4_1:+82112748 | None:intergenic |
| TGAGTGAGTGGTCACATCAG+AGG | 0.640749 | 4_1:-82113528 | Msa0577810:CDS |
| AGGATGTTGGAAGCATAGAA+GGG | 0.642867 | 4_1:+82113938 | None:intergenic |
| TTAAAATCCAAGGTGCGACA+AGG | 0.643984 | 4_1:-82110903 | Msa0577810:three_prime_UTR |
| GTAGGCATCAAACCAACAGT+TGG | 0.645953 | 4_1:-82112707 | Msa0577810:CDS |
| GTGTAATTCCAATTAGCCCA+AGG | 0.647537 | 4_1:-82112667 | Msa0577810:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.659008 | 4_1:-82112836 | Msa0577810:CDS |
| AGGTCTAGTGAAGCTCCTAG+TGG | 0.675570 | 4_1:-82113508 | Msa0577810:CDS |
| ATGTGACCACTCACTCAGGG+TGG | 0.680087 | 4_1:+82113534 | None:intergenic |
| AGTGGTTGGAATGCTAGAGG+GGG | 0.698357 | 4_1:-82113490 | Msa0577810:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.705508 | 4_1:-82112849 | Msa0577810:intron |
| TCGCTTGGTACTGAAACCGA+CGG | 0.731304 | 4_1:-82112764 | Msa0577810:CDS |
| GATCCACTACTTGAACCACA+AGG | 0.767744 | 4_1:+82112821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATATAAGCAAAA+AGG | + | chr4_1:82111616-82111635 | None:intergenic | 10.0% |
| !!! | ATTTTAAGACTATATTATAT+TGG | - | chr4_1:82113327-82113346 | Msa0577810:intron | 10.0% |
| !! | AACTAAAAGTAAATAAAATC+TGG | - | chr4_1:82113237-82113256 | Msa0577810:intron | 15.0% |
| !!! | TAGTCTTTTACATATATTAT+GGG | + | chr4_1:82113362-82113381 | None:intergenic | 15.0% |
| !!! | TTAGTCTTTTACATATATTA+TGG | + | chr4_1:82113363-82113382 | None:intergenic | 15.0% |
| !! | AAAATTAGAAAGTGATTATT+AGG | + | chr4_1:82113969-82113988 | None:intergenic | 15.0% |
| !!! | TTTGTATTTTGATTTGTTTC+AGG | + | chr4_1:82110920-82110939 | None:intergenic | 20.0% |
| !!! | TATATATACTCACCAATTTT+GGG | + | chr4_1:82112768-82112787 | None:intergenic | 20.0% |
| !!! | ATATATATACTCACCAATTT+TGG | + | chr4_1:82112769-82112788 | None:intergenic | 20.0% |
| !! | GCATAAGAAAATAAACAAAA+GGG | + | chr4_1:82112801-82112820 | None:intergenic | 20.0% |
| !! | TGCATAAGAAAATAAACAAA+AGG | + | chr4_1:82112802-82112821 | None:intergenic | 20.0% |
| !!! | ATATGAATTAGTATTGATCA+AGG | - | chr4_1:82112821-82112840 | Msa0577810:CDS | 20.0% |
| !! | TAAGCAATTTCAATTAACTT+CGG | + | chr4_1:82113140-82113159 | None:intergenic | 20.0% |
| !! | TTAAAACTCTATCTTAGTTA+TGG | + | chr4_1:82113484-82113503 | None:intergenic | 20.0% |
| !!! | TTATAATTTAGGCTTTGTTA+CGG | + | chr4_1:82113749-82113768 | None:intergenic | 20.0% |
| !!! | GATTGTTCAAGTTATAATTT+AGG | + | chr4_1:82113760-82113779 | None:intergenic | 20.0% |
| !!! | ATAATCACTTTCTAATTTTC+AGG | - | chr4_1:82113970-82113989 | Msa0577810:CDS | 20.0% |
| !!! | TGTAACTAACAGAAGTATTA+TGG | + | chr4_1:82110775-82110794 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | + | chr4_1:82111059-82111078 | None:intergenic | 25.0% |
| ! | CTTATACTTACAATTGAGTA+TGG | + | chr4_1:82111479-82111498 | None:intergenic | 25.0% |
| ! | TACACACAAACTAAAAATAG+TGG | - | chr4_1:82111507-82111526 | Msa0577810:intron | 25.0% |
| !!! | TTATTTTTTGACTTGCAATC+AGG | + | chr4_1:82111663-82111682 | None:intergenic | 25.0% |
| ! | AACTCATTTGATATTTCTCT+CGG | + | chr4_1:82111789-82111808 | None:intergenic | 25.0% |
| ! | AAATGAGTTCATTAAAACCA+TGG | - | chr4_1:82111800-82111819 | Msa0577810:CDS | 25.0% |
| ! | ATGAATGATTCTTGAAAATG+AGG | - | chr4_1:82111840-82111859 | Msa0577810:CDS | 25.0% |
| ! | AGTCTATATATATGGCAAAT+TGG | - | chr4_1:82112108-82112127 | Msa0577810:CDS | 25.0% |
| !! | TAGATAAATGTCTTTTGACA+GGG | + | chr4_1:82112188-82112207 | None:intergenic | 25.0% |
| !! | ATAGATAAATGTCTTTTGAC+AGG | + | chr4_1:82112189-82112208 | None:intergenic | 25.0% |
| !! | TTAGTTACCTTAACGTTTTT+AGG | + | chr4_1:82112471-82112490 | None:intergenic | 25.0% |
| ! | AAACTAGTATTTGTCAAGTA+CGG | - | chr4_1:82112497-82112516 | Msa0577810:intron | 25.0% |
| !! | CATATTCTTTTGTCAAAATC+AGG | - | chr4_1:82112560-82112579 | Msa0577810:intron | 25.0% |
| ! | AACATTGATCAAATTATCAG+TGG | - | chr4_1:82112622-82112641 | Msa0577810:intron | 25.0% |
| ! | ATCTTAATTGTAGGAGAAAA+TGG | - | chr4_1:82112848-82112867 | Msa0577810:intron | 25.0% |
| !! | TTAGAAGTGTGAAGTATTAA+TGG | - | chr4_1:82113209-82113228 | Msa0577810:intron | 25.0% |
| !! | CTTTTACATATATTATGGGT+TGG | + | chr4_1:82113358-82113377 | None:intergenic | 25.0% |
| ! | TATGGTTTATGACAAAAGTA+GGG | + | chr4_1:82113466-82113485 | None:intergenic | 25.0% |
| ! | TTATGGTTTATGACAAAAGT+AGG | + | chr4_1:82113467-82113486 | None:intergenic | 25.0% |
| !!! | TCAAACACGTTTTTTTTTCA+AGG | + | chr4_1:82113524-82113543 | None:intergenic | 25.0% |
| ! | AAACCATTATCAACTGAAAA+TGG | + | chr4_1:82113556-82113575 | None:intergenic | 25.0% |
| ! | ATGTCATTAACATTGTTGAT+TGG | - | chr4_1:82113807-82113826 | Msa0577810:CDS | 25.0% |
| ! | TAGAAAGTGATTATTAGGAA+GGG | + | chr4_1:82113964-82113983 | None:intergenic | 25.0% |
| ! | TTAGAAAGTGATTATTAGGA+AGG | + | chr4_1:82113965-82113984 | None:intergenic | 25.0% |
| !! | CTAACAGAAGTATTATGGAA+AGG | + | chr4_1:82110770-82110789 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | + | chr4_1:82110878-82110897 | None:intergenic | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:82111049-82111068 | Msa0577810:three_prime_UTR | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | - | chr4_1:82111067-82111086 | Msa0577810:three_prime_UTR | 30.0% | |
| TTTACGTATTCCTGTACATT+TGG | - | chr4_1:82111441-82111460 | Msa0577810:intron | 30.0% | |
| TACTTACAATTGAGTATGGA+GGG | + | chr4_1:82111475-82111494 | None:intergenic | 30.0% | |
| ATACTTACAATTGAGTATGG+AGG | + | chr4_1:82111476-82111495 | None:intergenic | 30.0% | |
| CCAAAATACAAGCAAAACTT+AGG | + | chr4_1:82111576-82111595 | None:intergenic | 30.0% | |
| ! | CCTAAGTTTTGCTTGTATTT+TGG | - | chr4_1:82111573-82111592 | Msa0577810:CDS | 30.0% |
| AAAAAGGTAGTCATATTTGG+TGG | + | chr4_1:82111600-82111619 | None:intergenic | 30.0% | |
| AGCAAAAAGGTAGTCATATT+TGG | + | chr4_1:82111603-82111622 | None:intergenic | 30.0% | |
| AACATTTACTGAATCATAGC+TGG | - | chr4_1:82111681-82111700 | Msa0577810:CDS | 30.0% | |
| TTCAAGAATCATTCATGAGT+AGG | + | chr4_1:82111836-82111855 | None:intergenic | 30.0% | |
| AATGATTCTTGAAAATGAGG+AGG | - | chr4_1:82111843-82111862 | Msa0577810:CDS | 30.0% | |
| AATTTCAGTAGCAGCAAATT+TGG | - | chr4_1:82111940-82111959 | Msa0577810:intron | 30.0% | |
| GTTGGGTAAGTCTATATATA+TGG | - | chr4_1:82112100-82112119 | Msa0577810:CDS | 30.0% | |
| TGTTGATATAAAGCAATCGT+AGG | + | chr4_1:82112139-82112158 | None:intergenic | 30.0% | |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | - | chr4_1:82112361-82112380 | Msa0577810:CDS | 30.0% |
| GTGAAACAACTAAATCTTTC+AGG | + | chr4_1:82112702-82112721 | None:intergenic | 30.0% | |
| CTGAAAAGACAAATGGAATT+GGG | - | chr4_1:82112898-82112917 | Msa0577810:intron | 30.0% | |
| CTTTATTGAACATGACAAGA+TGG | - | chr4_1:82112937-82112956 | Msa0577810:intron | 30.0% | |
| AAGAAATAAACTTGATGCTG+TGG | - | chr4_1:82112989-82113008 | Msa0577810:intron | 30.0% | |
| !! | ACACCTTTTTCATACTTTAG+CGG | - | chr4_1:82113014-82113033 | Msa0577810:intron | 30.0% |
| AACAATACTGCTAATTTGAC+TGG | + | chr4_1:82113389-82113408 | None:intergenic | 30.0% | |
| TATTCACTTGCAACAATTAC+TGG | - | chr4_1:82113663-82113682 | Msa0577810:CDS | 30.0% | |
| TGCACTTCTCTAGATAATTT+AGG | + | chr4_1:82113782-82113801 | None:intergenic | 30.0% | |
| !! | TTGATTGGTCTTAAAATCCA+AGG | - | chr4_1:82113822-82113841 | Msa0577810:CDS | 30.0% |
| TGGAAAGGAACTTGAAGAAA+GGG | + | chr4_1:82110755-82110774 | None:intergenic | 35.0% | |
| ATGGAAAGGAACTTGAAGAA+AGG | + | chr4_1:82110756-82110775 | None:intergenic | 35.0% | |
| ATACAAAACCCAGTTCTCAA+AGG | - | chr4_1:82110933-82110952 | Msa0577810:three_prime_UTR | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:82111043-82111062 | Msa0577810:three_prime_UTR | 35.0% |
| TTAGCAGGTTAAGGAAAGTT+GGG | - | chr4_1:82111159-82111178 | Msa0577810:intron | 35.0% | |
| AAAGTTGGGGCTATCATATT+AGG | - | chr4_1:82111173-82111192 | Msa0577810:intron | 35.0% | |
| AAGTTGGGGCTATCATATTA+GGG | - | chr4_1:82111174-82111193 | Msa0577810:intron | 35.0% | |
| CTTCTTACTTAATGTGAGCT+TGG | - | chr4_1:82111292-82111311 | Msa0577810:intron | 35.0% | |
| CTTATCATGTATTTGCCTAG+CGG | - | chr4_1:82111375-82111394 | Msa0577810:intron | 35.0% | |
| !!! | AATCATAGCTGGCCTTTTTA+TGG | - | chr4_1:82111692-82111711 | Msa0577810:CDS | 35.0% |
| TCATTTGATATTTCTCTCGG+TGG | + | chr4_1:82111786-82111805 | None:intergenic | 35.0% | |
| CTACTGAGTTCATACTTGAA+GGG | + | chr4_1:82112009-82112028 | None:intergenic | 35.0% | |
| ACTACTGAGTTCATACTTGA+AGG | + | chr4_1:82112010-82112029 | None:intergenic | 35.0% | |
| TCAAGTATGAACTCAGTAGT+AGG | - | chr4_1:82112010-82112029 | Msa0577810:CDS | 35.0% | |
| AATGTGCAACATTGTTTGTG+TGG | - | chr4_1:82112213-82112232 | Msa0577810:intron | 35.0% | |
| !!! | TTGTTTGTGTGGTTTTGTAC+AGG | - | chr4_1:82112224-82112243 | Msa0577810:intron | 35.0% |
| TATGTTCTTGAAACCATAGC+AGG | - | chr4_1:82112277-82112296 | Msa0577810:CDS | 35.0% | |
| GCATCAAAGTATATCCCAAA+AGG | - | chr4_1:82112331-82112350 | Msa0577810:CDS | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | - | chr4_1:82112334-82112353 | Msa0577810:CDS | 35.0% | |
| GGACTAAGAGGAAAAAGATT+AGG | - | chr4_1:82112382-82112401 | Msa0577810:CDS | 35.0% | |
| ! | GTGAGACTGTACTACAATTT+TGG | - | chr4_1:82112409-82112428 | Msa0577810:CDS | 35.0% |
| AGCTACACCTAAAAACGTTA+AGG | - | chr4_1:82112461-82112480 | Msa0577810:CDS | 35.0% | |
| ! | GTCAAGTACGGATACTTTTA+AGG | - | chr4_1:82112509-82112528 | Msa0577810:intron | 35.0% |
| TTTGTCAAAATCAGGCAAAG+AGG | - | chr4_1:82112568-82112587 | Msa0577810:intron | 35.0% | |
| CAACAAGAAACACCCAAAAT+TGG | - | chr4_1:82112753-82112772 | Msa0577810:CDS | 35.0% | |
| CAAGGTAGCATCTTAATTGT+AGG | - | chr4_1:82112839-82112858 | Msa0577810:CDS | 35.0% | |
| TTGTAGGAGAAAATGGAGTA+TGG | - | chr4_1:82112855-82112874 | Msa0577810:intron | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | - | chr4_1:82112897-82112916 | Msa0577810:intron | 35.0% | |
| ATGACAAGATGGTCACAAAA+TGG | - | chr4_1:82112948-82112967 | Msa0577810:intron | 35.0% | |
| TGACAAGATGGTCACAAAAT+GGG | - | chr4_1:82112949-82112968 | Msa0577810:intron | 35.0% | |
| ! | ATGCCATTTGGAATTTGCTT+TGG | - | chr4_1:82113095-82113114 | Msa0577810:intron | 35.0% |
| !! | ATTTGCTTTGGAGGTTTGAA+AGG | - | chr4_1:82113107-82113126 | Msa0577810:intron | 35.0% |
| !!! | GTGCCATTTTCAGTTGATAA+TGG | - | chr4_1:82113550-82113569 | Msa0577810:CDS | 35.0% |
| CAAGTGAATATTTCGACTCT+CGG | + | chr4_1:82113653-82113672 | None:intergenic | 35.0% | |
| TCTTCAACTCTATTACTAGC+AGG | + | chr4_1:82113710-82113729 | None:intergenic | 35.0% | |
| CATAGAAACTTGTACCAACA+AGG | - | chr4_1:82113856-82113875 | Msa0577810:CDS | 35.0% | |
| TACCAACAAGGTGATAGAAT+AGG | - | chr4_1:82113868-82113887 | Msa0577810:CDS | 35.0% | |
| ATCCTATTCTATCACCTTGT+TGG | + | chr4_1:82113873-82113892 | None:intergenic | 35.0% | |
| TCCGAAAAATTTGAGAGTCT+TGG | - | chr4_1:82113903-82113922 | Msa0577810:CDS | 35.0% | |
| ! | CCCAAGACTCTCAAATTTTT+CGG | + | chr4_1:82113907-82113926 | None:intergenic | 35.0% |
| CCGAAAAATTTGAGAGTCTT+GGG | - | chr4_1:82113904-82113923 | Msa0577810:CDS | 35.0% | |
| AAGTGATTATTAGGAAGGGA+GGG | + | chr4_1:82113960-82113979 | None:intergenic | 35.0% | |
| AAAGTGATTATTAGGAAGGG+AGG | + | chr4_1:82113961-82113980 | None:intergenic | 35.0% | |
| ! | AGGATGTTGGAAGCATAGAA+GGG | + | chr4_1:82110800-82110819 | None:intergenic | 40.0% |
| ! | AAGGATGTTGGAAGCATAGA+AGG | + | chr4_1:82110801-82110820 | None:intergenic | 40.0% |
| TTCTATGCTTCCAACATCCT+TGG | - | chr4_1:82110800-82110819 | Msa0577810:three_prime_UTR | 40.0% | |
| ! | CTAAGACTCCTTTGAGAACT+GGG | + | chr4_1:82110944-82110963 | None:intergenic | 40.0% |
| ! | TCTAAGACTCCTTTGAGAAC+TGG | + | chr4_1:82110945-82110964 | None:intergenic | 40.0% |
| AGTTCTCAAAGGAGTCTTAG+AGG | - | chr4_1:82110944-82110963 | Msa0577810:intron | 40.0% | |
| ATAGAGCTGATCAAGAGAGA+AGG | - | chr4_1:82110994-82111013 | Msa0577810:three_prime_UTR | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | - | chr4_1:82111089-82111108 | Msa0577810:intron | 40.0% | |
| GTTAGCAGGTTAAGGAAAGT+TGG | - | chr4_1:82111158-82111177 | Msa0577810:intron | 40.0% | |
| TAGCAGGTTAAGGAAAGTTG+GGG | - | chr4_1:82111160-82111179 | Msa0577810:intron | 40.0% | |
| ACGGCTCTCTAACCATAAAA+AGG | + | chr4_1:82111707-82111726 | None:intergenic | 40.0% | |
| ! | TTTTATGGTTAGAGAGCCGT+AGG | - | chr4_1:82111707-82111726 | Msa0577810:CDS | 40.0% |
| TAGCAAAAAGGCTCAACCTA+CGG | + | chr4_1:82111726-82111745 | None:intergenic | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | - | chr4_1:82111886-82111905 | Msa0577810:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | + | chr4_1:82111899-82111918 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | - | chr4_1:82111899-82111918 | Msa0577810:intron | 40.0% | |
| !! | TTGTGGTTCAAGTAGTGGAT+CGG | - | chr4_1:82111916-82111935 | Msa0577810:intron | 40.0% |
| ! | CATACTTGAAGGGCATAAGA+TGG | + | chr4_1:82111999-82112018 | None:intergenic | 40.0% |
| GTGTAATTCCAATTAGCCCA+AGG | - | chr4_1:82112068-82112087 | Msa0577810:CDS | 40.0% | |
| AAATTGCGTTCGCAATGCAT+GGG | + | chr4_1:82112164-82112183 | None:intergenic | 40.0% | |
| AAAATTGCGTTCGCAATGCA+TGG | + | chr4_1:82112165-82112184 | None:intergenic | 40.0% | |
| ! | TTTTGTACAGGCCAATTTGC+AGG | - | chr4_1:82112236-82112255 | Msa0577810:intron | 40.0% |
| AACATAAGCAGCATCCGATA+CGG | + | chr4_1:82112263-82112282 | None:intergenic | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:82112348-82112367 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:82112349-82112368 | None:intergenic | 40.0% |
| !! | CTAAAGAAAGACGGACTAAG+AGG | - | chr4_1:82112370-82112389 | Msa0577810:CDS | 40.0% |
| ! | ATCTTTCAGGTATGCGTTCA+AGG | + | chr4_1:82112689-82112708 | None:intergenic | 40.0% |
| TGTTTCACCAGTGAAAAGCT+TGG | - | chr4_1:82112714-82112733 | Msa0577810:CDS | 40.0% | |
| CTGCAAGCTGAAAAGACAAA+TGG | - | chr4_1:82112891-82112910 | Msa0577810:intron | 40.0% | |
| ACGCCGCTAAAGTATGAAAA+AGG | + | chr4_1:82113020-82113039 | None:intergenic | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:82113070-82113089 | Msa0577810:intron | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | - | chr4_1:82113071-82113090 | Msa0577810:intron | 40.0% | |
| ! | TATGAAAAGGGCATGCCATT+TGG | - | chr4_1:82113083-82113102 | Msa0577810:intron | 40.0% |
| CCTCCAAAGCAAATTCCAAA+TGG | + | chr4_1:82113101-82113120 | None:intergenic | 40.0% | |
| ! | CCATTTGGAATTTGCTTTGG+AGG | - | chr4_1:82113098-82113117 | Msa0577810:intron | 40.0% |
| CACACTTCTAACTTTCGAAG+CGG | + | chr4_1:82113200-82113219 | None:intergenic | 40.0% | |
| ! | ATCTGGAATTGACAGTATGC+TGG | - | chr4_1:82113254-82113273 | Msa0577810:intron | 40.0% |
| CAACAATTACTGGTGCACTT+AGG | - | chr4_1:82113673-82113692 | Msa0577810:CDS | 40.0% | |
| TTAAAATCCAAGGTGCGACA+AGG | - | chr4_1:82113832-82113851 | Msa0577810:CDS | 40.0% | |
| CAAACTCTCGAGTTCTTAGA+AGG | + | chr4_1:82113935-82113954 | None:intergenic | 40.0% | |
| ! | CTTCTAAGAACTCGAGAGTT+TGG | - | chr4_1:82113933-82113952 | Msa0577810:CDS | 40.0% |
| TCAGGACAACTCTTCAATTC+TGG | - | chr4_1:82113988-82114007 | Msa0577810:CDS | 40.0% | |
| AATCCACTAGCCAAGGATGT+TGG | + | chr4_1:82110813-82110832 | None:intergenic | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | + | chr4_1:82110820-82110839 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | - | chr4_1:82110821-82110840 | Msa0577810:three_prime_UTR | 45.0% |
| TCAGCATGTGCTAATGCATC+TGG | + | chr4_1:82110975-82110994 | None:intergenic | 45.0% | |
| ! | TGAAAGAGAACCTGCTGCTT+TGG | + | chr4_1:82111021-82111040 | None:intergenic | 45.0% |
| AAAGCAGCAGGTTCTCTTTC+AGG | - | chr4_1:82111020-82111039 | Msa0577810:three_prime_UTR | 45.0% | |
| AAGCAGCAGGTTCTCTTTCA+GGG | - | chr4_1:82111021-82111040 | Msa0577810:three_prime_UTR | 45.0% | |
| TGGGGCTATCATATTAGGGA+AGG | - | chr4_1:82111178-82111197 | Msa0577810:intron | 45.0% | |
| CTAGTGGTTGGAATGCTAGA+GGG | - | chr4_1:82111243-82111262 | Msa0577810:intron | 45.0% | |
| TAGTGGTTGGAATGCTAGAG+GGG | - | chr4_1:82111244-82111263 | Msa0577810:intron | 45.0% | |
| ACATCAGACTTTCAACCGCT+AGG | + | chr4_1:82111393-82111412 | None:intergenic | 45.0% | |
| GGAGTAGCATCCAAATGTAC+AGG | + | chr4_1:82111454-82111473 | None:intergenic | 45.0% | |
| !! | AGCCTTTTTGCTAGCTTACG+AGG | - | chr4_1:82111733-82111752 | Msa0577810:CDS | 45.0% |
| GATCCTTGTGGTTCAAGTAG+TGG | - | chr4_1:82111911-82111930 | Msa0577810:intron | 45.0% | |
| GATCCACTACTTGAACCACA+AGG | + | chr4_1:82111917-82111936 | None:intergenic | 45.0% | |
| ! | AATTTGGTGACTGTGTCGCT+TGG | - | chr4_1:82111956-82111975 | Msa0577810:intron | 45.0% |
| GTAGGCATCAAACCAACAGT+TGG | - | chr4_1:82112028-82112047 | Msa0577810:CDS | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | + | chr4_1:82112043-82112062 | None:intergenic | 45.0% | |
| ! | TAAAGCGTCTATGCCTGCTA+TGG | + | chr4_1:82112293-82112312 | None:intergenic | 45.0% |
| ! | ACATCTGCCAAGCTTTTCAC+TGG | + | chr4_1:82112724-82112743 | None:intergenic | 45.0% |
| !! | TTTAGCGGCGTACTTGCTAT+TGG | - | chr4_1:82113029-82113048 | Msa0577810:intron | 45.0% |
| !! | CTTGCTATTGGAGGTTATCC+TGG | - | chr4_1:82113041-82113060 | Msa0577810:intron | 45.0% |
| ! | ATGCCCTTTTCATATCCTGC+TGG | + | chr4_1:82113077-82113096 | None:intergenic | 45.0% |
| TTCTAACTTTCGAAGCGGAG+GGG | + | chr4_1:82113195-82113214 | None:intergenic | 45.0% | |
| CTTCTAACTTTCGAAGCGGA+GGG | + | chr4_1:82113196-82113215 | None:intergenic | 45.0% | |
| ACTTCTAACTTTCGAAGCGG+AGG | + | chr4_1:82113197-82113216 | None:intergenic | 45.0% | |
| GTGAATATTTCGACTCTCGG+TGG | + | chr4_1:82113650-82113669 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTCTTTTTAATT+AGG | + | chr4_1:82111759-82111778 | None:intergenic | 5.0% |
| CTTCCAACATCCTTGGCTAG+TGG | - | chr4_1:82110807-82110826 | Msa0577810:three_prime_UTR | 50.0% | |
| GGTTCTCTTTCAGGGTTGCA+TGG | - | chr4_1:82111029-82111048 | Msa0577810:three_prime_UTR | 50.0% | |
| TCAGTAGTGCCAAGAGATGC+TGG | - | chr4_1:82111131-82111150 | Msa0577810:intron | 50.0% | |
| CTAACTACGCCAGCATCTCT+TGG | + | chr4_1:82111143-82111162 | None:intergenic | 50.0% | |
| CTGGCGTAGTTAGCAGGTTA+AGG | - | chr4_1:82111150-82111169 | Msa0577810:intron | 50.0% | |
| CTGATGTGACCACTCACTCA+GGG | + | chr4_1:82111207-82111226 | None:intergenic | 50.0% | |
| TCTGATGTGACCACTCACTC+AGG | + | chr4_1:82111208-82111227 | None:intergenic | 50.0% | |
| TGAGTGAGTGGTCACATCAG+AGG | - | chr4_1:82111207-82111226 | Msa0577810:intron | 50.0% | |
| AGGTCTAGTGAAGCTCCTAG+TGG | - | chr4_1:82111227-82111246 | Msa0577810:intron | 50.0% | |
| CTAGTGAAGCTCCTAGTGGT+TGG | - | chr4_1:82111231-82111250 | Msa0577810:intron | 50.0% | |
| CCTCTAGCATTCCAACCACT+AGG | + | chr4_1:82111245-82111264 | None:intergenic | 50.0% | |
| CCTAGTGGTTGGAATGCTAG+AGG | - | chr4_1:82111242-82111261 | Msa0577810:intron | 50.0% | |
| AGTGGTTGGAATGCTAGAGG+GGG | - | chr4_1:82111245-82111264 | Msa0577810:intron | 50.0% | |
| GGCCTCGTAAGCTAGCAAAA+AGG | + | chr4_1:82111738-82111757 | None:intergenic | 50.0% | |
| GAGTAGGCAGAATGAAGCCA+TGG | + | chr4_1:82111820-82111839 | None:intergenic | 50.0% | |
| ! | TCGCTTGGTACTGAAACCGA+CGG | - | chr4_1:82111971-82111990 | Msa0577810:intron | 50.0% |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:82112046-82112065 | Msa0577810:CDS | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | + | chr4_1:82112079-82112098 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | + | chr4_1:82112087-82112106 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | + | chr4_1:82112088-82112107 | None:intergenic | 50.0% | |
| GCCAATTTGCAGGACCGTAT+CGG | - | chr4_1:82112246-82112265 | Msa0577810:intron | 50.0% | |
| TCCGATACGGTCCTGCAAAT+TGG | + | chr4_1:82112250-82112269 | None:intergenic | 50.0% | |
| !!! | CAGGCAAAGAGGTGCTGTTT+TGG | - | chr4_1:82112579-82112598 | Msa0577810:intron | 50.0% |
| CAGCTTGCAGCATGAGATCT+TGG | + | chr4_1:82112881-82112900 | None:intergenic | 50.0% | |
| TCTAACTTTCGAAGCGGAGG+GGG | + | chr4_1:82113194-82113213 | None:intergenic | 50.0% | |
| TCTATGACCTTGTCGCACCT+TGG | + | chr4_1:82113842-82113861 | None:intergenic | 50.0% | |
| GAGAGAAGGACCAAAGCAGC+AGG | - | chr4_1:82111008-82111027 | Msa0577810:three_prime_UTR | 55.0% | |
| ! | GCAGGCTCTTTTGCACTGCT+TGG | - | chr4_1:82111107-82111126 | Msa0577810:intron | 55.0% |
| GAGATGCTGGCGTAGTTAGC+AGG | - | chr4_1:82111144-82111163 | Msa0577810:intron | 55.0% | |
| ATGTGACCACTCACTCAGGG+TGG | + | chr4_1:82111204-82111223 | None:intergenic | 55.0% | |
| TGGAATGCTAGAGGGGGACA+AGG | - | chr4_1:82111251-82111270 | Msa0577810:intron | 55.0% | |
| TGCTAGAGGGGGACAAGGAA+AGG | - | chr4_1:82111256-82111275 | Msa0577810:intron | 55.0% | |
| AGGGCATAAGATGGAGCCGT+CGG | + | chr4_1:82111990-82112009 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | - | chr4_1:82112082-82112101 | Msa0577810:CDS | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | - | chr4_1:82112083-82112102 | Msa0577810:CDS | 55.0% | |
| !! | AGCGGCGTACTTGCTATTGG+AGG | - | chr4_1:82113032-82113051 | Msa0577810:intron | 55.0% |
| CCTGCTGGAACAATGACTCC+AGG | + | chr4_1:82113062-82113081 | None:intergenic | 55.0% | |
| CCTGGAGTCATTGTTCCAGC+AGG | - | chr4_1:82113059-82113078 | Msa0577810:intron | 55.0% | |
| GGAAGGCCACCCTGAGTGAG+TGG | - | chr4_1:82111195-82111214 | Msa0577810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82110727 | 82114030 | 82110727 | ID=Msa0577810;Name=Msa0577810 |
| chr4_1 | mRNA | 82110727 | 82114030 | 82110727 | ID=Msa0577810-mRNA-1;Parent=Msa0577810;Name=Msa0577810-mRNA-1;_AED=0.39;_eAED=0.39;_QI=5|1|1|1|0.66|0.57|7|342|515 |
| chr4_1 | exon | 82110727 | 82110954 | 82110727 | ID=Msa0577810-mRNA-1:exon:29730;Parent=Msa0577810-mRNA-1 |
| chr4_1 | exon | 82110988 | 82111100 | 82110988 | ID=Msa0577810-mRNA-1:exon:29729;Parent=Msa0577810-mRNA-1 |
| chr4_1 | exon | 82111536 | 82111896 | 82111536 | ID=Msa0577810-mRNA-1:exon:29728;Parent=Msa0577810-mRNA-1 |
| chr4_1 | exon | 82111983 | 82112175 | 82111983 | ID=Msa0577810-mRNA-1:exon:29727;Parent=Msa0577810-mRNA-1 |
| chr4_1 | exon | 82112275 | 82112511 | 82112275 | ID=Msa0577810-mRNA-1:exon:29726;Parent=Msa0577810-mRNA-1 |
| chr4_1 | exon | 82112653 | 82112864 | 82112653 | ID=Msa0577810-mRNA-1:exon:29725;Parent=Msa0577810-mRNA-1 |
| chr4_1 | exon | 82113480 | 82114030 | 82113480 | ID=Msa0577810-mRNA-1:exon:29724;Parent=Msa0577810-mRNA-1 |
| chr4_1 | five_prime_UTR | 82114026 | 82114030 | 82114026 | ID=Msa0577810-mRNA-1:five_prime_utr;Parent=Msa0577810-mRNA-1 |
| chr4_1 | CDS | 82113480 | 82114025 | 82113480 | ID=Msa0577810-mRNA-1:cds;Parent=Msa0577810-mRNA-1 |
| chr4_1 | CDS | 82112653 | 82112864 | 82112653 | ID=Msa0577810-mRNA-1:cds;Parent=Msa0577810-mRNA-1 |
| chr4_1 | CDS | 82112275 | 82112511 | 82112275 | ID=Msa0577810-mRNA-1:cds;Parent=Msa0577810-mRNA-1 |
| chr4_1 | CDS | 82111983 | 82112175 | 82111983 | ID=Msa0577810-mRNA-1:cds;Parent=Msa0577810-mRNA-1 |
| chr4_1 | CDS | 82111537 | 82111896 | 82111537 | ID=Msa0577810-mRNA-1:cds;Parent=Msa0577810-mRNA-1 |
| chr4_1 | three_prime_UTR | 82111536 | 82111536 | 82111536 | ID=Msa0577810-mRNA-1:three_prime_utr;Parent=Msa0577810-mRNA-1 |
| chr4_1 | three_prime_UTR | 82110988 | 82111100 | 82110988 | ID=Msa0577810-mRNA-1:three_prime_utr;Parent=Msa0577810-mRNA-1 |
| chr4_1 | three_prime_UTR | 82110727 | 82110954 | 82110727 | ID=Msa0577810-mRNA-1:three_prime_utr;Parent=Msa0577810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
