Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579260 | XP_003607793.2 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579260 | sp|Q96558|UGDH1_SOYBN | 85.208 | 480 | 71 | 0 | 1 | 480 | 1 | 480 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579260 | A0A396IGS6 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0579260 | Msa0579420 | 0.972330 | 1.369849e-134 | -8.615850e-47 |
| Msa0579260 | Msa0650700 | 0.883521 | 4.180975e-71 | -8.615850e-47 |
| Msa0579260 | Msa0650790 | 0.879740 | 9.735366e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579260 | MtrunA17_Chr4g0043081 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Msa0579260 | MtrunA17_Chr5g0418841 | 86.902 | 481 | 62 | 1 | 1 | 480 | 1 | 481 | 0.0 | 885 |
| Msa0579260 | MtrunA17_Chr7g0218701 | 83.750 | 480 | 78 | 0 | 1 | 480 | 1 | 480 | 0.0 | 855 |
| Msa0579260 | MtrunA17_Chr4g0061311 | 73.362 | 473 | 124 | 2 | 3 | 473 | 4 | 476 | 0.0 | 728 |
| Msa0579260 | MtrunA17_Chr6g0454531 | 64.557 | 79 | 28 | 0 | 12 | 90 | 16 | 94 | 1.65e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579260 | AT3G29360.1 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0579260 | AT3G29360.2 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0579260 | AT5G39320.1 | 82.845 | 478 | 82 | 0 | 1 | 478 | 1 | 478 | 0.0 | 851 |
| Msa0579260 | AT5G15490.1 | 82.708 | 480 | 83 | 0 | 1 | 480 | 1 | 480 | 0.0 | 847 |
| Msa0579260 | AT1G26570.1 | 80.457 | 481 | 93 | 1 | 1 | 480 | 1 | 481 | 0.0 | 816 |
| Msa0579260 | AT3G01010.1 | 72.393 | 163 | 40 | 2 | 318 | 480 | 1 | 158 | 6.43e-83 | 253 |
Find 125 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGATATTTATGCTAAT+TGG | 0.091386 | 4_1:+83935576 | Msa0579260:CDS |
| GTTGGTAAGCTCAGGAAAAT+TGG | 0.259126 | 4_1:+83936358 | Msa0579260:CDS |
| CATGCCTGCAGTGGCATAAA+AGG | 0.268669 | 4_1:+83936429 | Msa0579260:exon |
| GTACCCTCAGCAAGAAATTC+AGG | 0.280180 | 4_1:-83935388 | None:intergenic |
| TCTAAGAAGATTGCTGTTCT+TGG | 0.281241 | 4_1:+83935974 | Msa0579260:CDS |
| TTACTGGAAGCAAGTGATTA+AGG | 0.289704 | 4_1:+83935886 | Msa0579260:CDS |
| CTGTTCCAACCGTTGATTCT+CGG | 0.323687 | 4_1:-83935031 | None:intergenic |
| TTGAATGCTAGTGTTGGTTT+TGG | 0.346083 | 4_1:+83935788 | Msa0579260:CDS |
| GAAAGATATTTATGCTAATT+GGG | 0.354607 | 4_1:+83935577 | Msa0579260:CDS |
| TGTTAAATCAGCCGCTTTGC+CGG | 0.358742 | 4_1:-83935212 | None:intergenic |
| AGAGGATTCTGACTCATAAT+AGG | 0.360802 | 4_1:+83935335 | Msa0579260:CDS |
| ATTGCTTCAGCTGTTCTAAC+AGG | 0.364317 | 4_1:-83935310 | None:intergenic |
| AAGCGGCTGATTTAACATAC+TGG | 0.368249 | 4_1:+83935218 | Msa0579260:CDS |
| TTCATGTGGTAGCAAATTAC+TGG | 0.378490 | 4_1:+83935870 | Msa0579260:CDS |
| TGCTTTATCGAAGTTGGACT+TGG | 0.380856 | 4_1:-83936178 | None:intergenic |
| CAAGGGTTTGTTGGGAGATA+AGG | 0.381297 | 4_1:+83936054 | Msa0579260:CDS |
| GCCACTTGCTTTATCGAAGT+TGG | 0.388159 | 4_1:-83936184 | None:intergenic |
| AAAGCAAGTGGCTGTGGTTT+GGG | 0.389789 | 4_1:+83936195 | Msa0579260:CDS |
| GTCTGCTGAGCTCTCTAAAC+TGG | 0.391926 | 4_1:+83935634 | Msa0579260:CDS |
| ACCACGGTTACTGCAATCTT+AGG | 0.392452 | 4_1:-83934995 | None:intergenic |
| GGATTTATTGTTTATTCCAT+TGG | 0.392509 | 4_1:+83936379 | Msa0579260:CDS |
| ATTTGATGGTAGGAATGTTA+TGG | 0.395140 | 4_1:+83936333 | Msa0579260:CDS |
| TAAAGCAAGTGGCTGTGGTT+TGG | 0.402728 | 4_1:+83936194 | Msa0579260:CDS |
| CCACTTCAGTGCTGAAGAAA+AGG | 0.417004 | 4_1:-83935117 | None:intergenic |
| CGATGTGTGCAAGGGTTTGT+TGG | 0.421184 | 4_1:+83936045 | Msa0579260:CDS |
| AGAGATTCTCTGTGCCAAAA+AGG | 0.424500 | 4_1:-83935666 | None:intergenic |
| TGTGGTTTGGGATGCTTATG+AGG | 0.427030 | 4_1:+83936207 | Msa0579260:CDS |
| ATCCTTTATGATCTGATCTT+CGG | 0.439079 | 4_1:-83936107 | None:intergenic |
| ATGGTGAAAATTTGTTGCAT+TGG | 0.440890 | 4_1:+83934923 | Msa0579260:CDS |
| AGCCCGGATCGTGTCCTAAT+CGG | 0.446831 | 4_1:+83935512 | Msa0579260:CDS |
| CAACAACTCGGTTCACAAAC+CGG | 0.448174 | 4_1:-83935928 | None:intergenic |
| GTCTATATTTGCGAGTGTAA+TGG | 0.448773 | 4_1:+83935845 | Msa0579260:CDS |
| GTGTCTCCCTACCTCCGATT+AGG | 0.449487 | 4_1:-83935526 | None:intergenic |
| ATTACCTTGTATAGAGAAGA+TGG | 0.450940 | 4_1:-83934113 | None:intergenic |
| TGCAATCTTAGGACACTTCA+AGG | 0.467490 | 4_1:-83934984 | None:intergenic |
| GATCGCCGATGTTTCTAAAT+CGG | 0.469822 | 4_1:+83935258 | Msa0579260:CDS |
| TGGTGGCTCTTGCTTTCAGA+AGG | 0.474973 | 4_1:+83935808 | Msa0579260:CDS |
| AAAATTTGTTGCATTGGAGC+TGG | 0.481850 | 4_1:+83934929 | Msa0579260:CDS |
| TTCTCCATCTTCTCTATACA+AGG | 0.482323 | 4_1:+83934109 | Msa0579260:five_prime_UTR |
| GGACACGATCCGGGCTGAAA+AGG | 0.485556 | 4_1:-83935505 | None:intergenic |
| ATCGGAACAGACTCGAGGAT+TGG | 0.486245 | 4_1:+83935755 | Msa0579260:CDS |
| TTATTCCATTGGTAAGCCAC+TGG | 0.486901 | 4_1:+83936390 | Msa0579260:CDS |
| AAGCCGTGGTGAAGGAGTGC+AGG | 0.486980 | 4_1:+83935086 | Msa0579260:CDS |
| TTCGATAAAGCAAGTGGCTG+TGG | 0.488251 | 4_1:+83936189 | Msa0579260:CDS |
| TTCACCACGGCTTCAAGACC+TGG | 0.489528 | 4_1:-83935076 | None:intergenic |
| TACCGAAGATCAGATCATAA+AGG | 0.492354 | 4_1:+83936105 | Msa0579260:CDS |
| GTCGATGAAGAAATTCGATA+AGG | 0.498139 | 4_1:+83936132 | Msa0579260:CDS |
| GATGTGTGCAAGGGTTTGTT+GGG | 0.501277 | 4_1:+83936046 | Msa0579260:CDS |
| CCCTTGCACACATCGATAGC+CGG | 0.502325 | 4_1:-83936037 | None:intergenic |
| TACCCTCAGCAAGAAATTCA+GGG | 0.503132 | 4_1:-83935387 | None:intergenic |
| AGCAACTGGTGCTGATATCT+CGG | 0.508415 | 4_1:+83935718 | Msa0579260:CDS |
| TGCATTGGAGCTGGATATGT+TGG | 0.508667 | 4_1:+83934938 | Msa0579260:CDS |
| AAAACTCATGGTCTTGGAGC+CGG | 0.509641 | 4_1:+83935193 | Msa0579260:CDS |
| TCTTGGTTTCTCTTTCAAGA+AGG | 0.511984 | 4_1:+83935991 | Msa0579260:CDS |
| TTTATCGAAGTTGGACTTGG+TGG | 0.513987 | 4_1:-83936175 | None:intergenic |
| TCAGAAGGATATAATGAACT+TGG | 0.517285 | 4_1:+83935823 | Msa0579260:CDS |
| GGTAGGAATGTTATGGATGT+TGG | 0.519091 | 4_1:+83936340 | Msa0579260:CDS |
| TCAAGACCTGGCTCGTAGAT+CGG | 0.519115 | 4_1:-83935064 | None:intergenic |
| TTATGGATGTTGGTAAGCTC+AGG | 0.521362 | 4_1:+83936350 | Msa0579260:CDS |
| GGAGACACCAGAAGGACAAA+AGG | 0.523750 | 4_1:+83935541 | Msa0579260:CDS |
| TTGGTAAGCCACTGGATCCA+TGG | 0.524811 | 4_1:+83936398 | Msa0579260:CDS |
| TTATGCTAATTGGGTCCCTA+AGG | 0.524851 | 4_1:+83935586 | Msa0579260:CDS |
| AGAAGGACACAGGCGATACA+AGG | 0.525027 | 4_1:+83936008 | Msa0579260:CDS |
| CTTGGTGGTTGAAGATGAGC+AGG | 0.525970 | 4_1:-83936160 | None:intergenic |
| ACCGGCTATCGATGTGTGCA+AGG | 0.530309 | 4_1:+83936036 | Msa0579260:CDS |
| ATTTCAGCGCCGAGAATCAA+CGG | 0.534356 | 4_1:+83935022 | Msa0579260:CDS |
| CAAGGCAATCACAGCCATTG+TGG | 0.541163 | 4_1:-83934966 | None:intergenic |
| TTCTAAATCGGACAAAATTG+TGG | 0.542076 | 4_1:+83935270 | Msa0579260:CDS |
| AACCCTGAATTTCTTGCTGA+GGG | 0.543013 | 4_1:+83935385 | Msa0579260:CDS |
| AGGTCTTGAAGCCGTGGTGA+AGG | 0.543599 | 4_1:+83935078 | Msa0579260:CDS |
| TTAATGACTATCAGAAAAGC+CGG | 0.546119 | 4_1:+83935909 | Msa0579260:CDS |
| TCGGAGGTATCACACTCAAT+CGG | 0.548115 | 4_1:+83935737 | Msa0579260:CDS |
| GAGCTCAGCAGACCACAGAT+TGG | 0.552085 | 4_1:-83935624 | None:intergenic |
| AAGGCAATCACAGCCATTGT+GGG | 0.553236 | 4_1:-83934965 | None:intergenic |
| TTCTCTTTCAAGAAGGACAC+AGG | 0.554715 | 4_1:+83935998 | Msa0579260:CDS |
| TCCTTGAGCCATGGATCCAG+TGG | 0.560633 | 4_1:-83936406 | None:intergenic |
| TGGATCCAGTGGCTTACCAA+TGG | 0.562663 | 4_1:-83936395 | None:intergenic |
| CCTCCGATTAGGACACGATC+CGG | 0.564937 | 4_1:-83935515 | None:intergenic |
| ATTGGAGCTGGATATGTTGG+TGG | 0.565995 | 4_1:+83934941 | Msa0579260:CDS |
| TCGTGTCCTAATCGGAGGTA+GGG | 0.567068 | 4_1:+83935520 | Msa0579260:CDS |
| GCAGGCATGTCCTTGAGCCA+TGG | 0.569217 | 4_1:-83936415 | None:intergenic |
| CAGCGCCGAGAATCAACGGT+TGG | 0.569257 | 4_1:+83935026 | Msa0579260:CDS |
| AGGCGATACAAGGGAAGCAC+CGG | 0.573278 | 4_1:+83936018 | Msa0579260:CDS |
| TGGTGAAGGAGTGCAGGGGA+AGG | 0.576100 | 4_1:+83935092 | Msa0579260:CDS |
| AGCGGCTGATTTAACATACT+GGG | 0.577833 | 4_1:+83935219 | Msa0579260:CDS |
| CACCTACCGATCTACGAGCC+AGG | 0.578252 | 4_1:+83935058 | Msa0579260:CDS |
| AAACCCTGAATTTCTTGCTG+AGG | 0.578960 | 4_1:+83935384 | Msa0579260:CDS |
| ATCTGATCTTCGGTAACTTG+AGG | 0.579881 | 4_1:-83936097 | None:intergenic |
| TCAGCACTATGTGAAGCAAC+TGG | 0.581495 | 4_1:+83935704 | Msa0579260:CDS |
| ACACTAGCATTCAAGAACTT+AGG | 0.584911 | 4_1:-83935779 | None:intergenic |
| AAGTTCTTGAATGCTAGTGT+TGG | 0.587122 | 4_1:+83935782 | Msa0579260:CDS |
| GTTTGTTGGGAGATAAGGCA+AGG | 0.587768 | 4_1:+83936059 | Msa0579260:CDS |
| CGAGCCAGGTCTTGAAGCCG+TGG | 0.588293 | 4_1:+83935072 | Msa0579260:CDS |
| AGAAGCAACCGTGTTGAACA+TGG | 0.590789 | 4_1:-83935954 | None:intergenic |
| GCCACTGGATCCATGGCTCA+AGG | 0.597097 | 4_1:+83936405 | Msa0579260:CDS |
| TCCAACTTCGATAAAGCAAG+TGG | 0.600253 | 4_1:+83936183 | Msa0579260:CDS |
| TTTGTCCGATTTAGAAACAT+CGG | 0.602624 | 4_1:-83935263 | None:intergenic |
| AGCCGTGGTGAAGGAGTGCA+GGG | 0.608786 | 4_1:+83935087 | Msa0579260:CDS |
| AAATCATTTGCACCAATCTG+TGG | 0.612903 | 4_1:+83935612 | Msa0579260:CDS |
| ATCGTGTCCTAATCGGAGGT+AGG | 0.615001 | 4_1:+83935519 | Msa0579260:CDS |
| GCTCAAGGACATGCCTGCAG+TGG | 0.625363 | 4_1:+83936420 | Msa0579260:CDS |
| TCCCCTGCACTCCTTCACCA+CGG | 0.628514 | 4_1:-83935089 | None:intergenic |
| TGAACATGGACGCAACAACT+CGG | 0.630690 | 4_1:-83935940 | None:intergenic |
| CCGGCTATCGATGTGTGCAA+GGG | 0.631110 | 4_1:+83936037 | Msa0579260:CDS |
| CTCCGATTAGGACACGATCC+GGG | 0.633554 | 4_1:-83935514 | None:intergenic |
| GACCTGGCTCGTAGATCGGT+AGG | 0.635406 | 4_1:-83935060 | None:intergenic |
| TGTTGCGTCCATGTTCAACA+CGG | 0.638044 | 4_1:+83935946 | Msa0579260:CDS |
| GAAGGACACAGGCGATACAA+GGG | 0.639231 | 4_1:+83936009 | Msa0579260:CDS |
| GAACAGCTGAAGCAATTGAG+AGG | 0.641777 | 4_1:+83935317 | Msa0579260:CDS |
| GGAGGTAGGGAGACACCAGA+AGG | 0.655737 | 4_1:+83935533 | Msa0579260:CDS |
| CCGGATCGTGTCCTAATCGG+AGG | 0.664959 | 4_1:+83935515 | Msa0579260:CDS |
| TCCTAAGATTGCAGTAACCG+TGG | 0.667449 | 4_1:+83934994 | Msa0579260:CDS |
| CGAGTGTAATGGTCTTCATG+TGG | 0.667527 | 4_1:+83935856 | Msa0579260:CDS |
| ATATGTTGGTGGTCCCACAA+TGG | 0.680415 | 4_1:+83934952 | Msa0579260:CDS |
| CATACTGGGAGAGTTCTGCT+CGG | 0.681592 | 4_1:+83935233 | Msa0579260:CDS |
| CTGGCTCGTAGATCGGTAGG+TGG | 0.689180 | 4_1:-83935057 | None:intergenic |
| TGGTCTTGGAGCCGGCAAAG+CGG | 0.691470 | 4_1:+83935201 | Msa0579260:CDS |
| ACTCAATCGGAACAGACTCG+AGG | 0.702881 | 4_1:+83935750 | Msa0579260:CDS |
| AACTGGTGCTGATATCTCGG+AGG | 0.704506 | 4_1:+83935721 | Msa0579260:CDS |
| GTGTTTGCATTATGACTGAG+TGG | 0.706540 | 4_1:+83936248 | Msa0579260:CDS |
| TGTTTGCATTATGACTGAGT+GGG | 0.707780 | 4_1:+83936249 | Msa0579260:CDS |
| CGGCGCTGAAATATCGACCA+CGG | 0.712301 | 4_1:-83935011 | None:intergenic |
| GCCGTGGTGAAGGAGTGCAG+GGG | 0.744462 | 4_1:+83935088 | Msa0579260:CDS |
| GGTTTGGGATGCTTATGAGG+CGG | 0.748746 | 4_1:+83936210 | Msa0579260:CDS |
| GAGGCGGTGAAAGATGCACA+CGG | 0.755151 | 4_1:+83936226 | Msa0579260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATGTTTAAATATAAT+AGG | - | chr4_1:83936481-83936500 | None:intergenic | 10.0% |
| !! | AATAATACTATTAAGAATTG+TGG | - | chr4_1:83934269-83934288 | None:intergenic | 15.0% |
| !! | TAAAAGAATATTAAATCCAT+AGG | - | chr4_1:83934395-83934414 | None:intergenic | 15.0% |
| !!! | TAGAATGATTTTTTAATAAC+AGG | - | chr4_1:83934445-83934464 | None:intergenic | 15.0% |
| !!! | TTTTATCAATATTCAATGAA+AGG | - | chr4_1:83936665-83936684 | None:intergenic | 15.0% |
| !! | TGGCATATACTAATAAAATA+AGG | - | chr4_1:83934249-83934268 | None:intergenic | 20.0% |
| !!! | GTCCATAAATTATTCAATTT+TGG | + | chr4_1:83934743-83934762 | Msa0579260:intron | 20.0% |
| !! | GACCAAAATTGAATAATTTA+TGG | - | chr4_1:83934748-83934767 | None:intergenic | 20.0% |
| !! | TACATTCAAATGCTTATTAT+TGG | - | chr4_1:83934775-83934794 | None:intergenic | 20.0% |
| !!! | TACTTTGAAATGCTTATTAT+TGG | - | chr4_1:83934823-83934842 | None:intergenic | 20.0% |
| !! | ATATACATTATTGTTATGCA+TGG | + | chr4_1:83934843-83934862 | Msa0579260:intron | 20.0% |
| !! | AAGTTAAGAAAAAGCAAAAA+TGG | + | chr4_1:83934904-83934923 | Msa0579260:exon | 20.0% |
| !!! | AATTTTATCTGTAATAGGTA+CGG | + | chr4_1:83935472-83935491 | Msa0579260:intron | 20.0% |
| !! | TGAAAGATATTTATGCTAAT+TGG | + | chr4_1:83935576-83935595 | Msa0579260:CDS | 20.0% |
| !! | GAAAGATATTTATGCTAATT+GGG | + | chr4_1:83935577-83935596 | Msa0579260:CDS | 20.0% |
| !!! | GCATATTGTCATAAATTTTT+TGG | - | chr4_1:83936297-83936316 | None:intergenic | 20.0% |
| ! | GAATATTCAATTGTACATGA+AGG | - | chr4_1:83934357-83934376 | None:intergenic | 25.0% |
| ! | ACAGACACAACATATTTATA+AGG | - | chr4_1:83934670-83934689 | None:intergenic | 25.0% |
| ! | AATTCCTGAAATAGTTAGTT+AGG | + | chr4_1:83935411-83935430 | Msa0579260:intron | 25.0% |
| ! | ATAACCTAACTAACTATTTC+AGG | - | chr4_1:83935418-83935437 | None:intergenic | 25.0% |
| !! | GTACCAATTTTATCTGTAAT+AGG | + | chr4_1:83935467-83935486 | Msa0579260:intron | 25.0% |
| ! | GTACCTATTACAGATAAAAT+TGG | - | chr4_1:83935473-83935492 | None:intergenic | 25.0% |
| ! | GGATTTATTGTTTATTCCAT+TGG | + | chr4_1:83936379-83936398 | Msa0579260:CDS | 25.0% |
| ATTACCTTGTATAGAGAAGA+TGG | - | chr4_1:83934116-83934135 | None:intergenic | 30.0% | |
| AAAATAAGGTAGCAAGATCT+AGG | - | chr4_1:83934235-83934254 | None:intergenic | 30.0% | |
| AGTACATATGATTTCTGACA+CGG | + | chr4_1:83934520-83934539 | Msa0579260:intron | 30.0% | |
| AGATCACACTCAATGTTATA+TGG | - | chr4_1:83934556-83934575 | None:intergenic | 30.0% | |
| AAAACATTGAGTGTGAACAA+TGG | + | chr4_1:83934585-83934604 | Msa0579260:intron | 30.0% | |
| !! | ATGGTGAAAATTTGTTGCAT+TGG | + | chr4_1:83934923-83934942 | Msa0579260:CDS | 30.0% |
| TTTGTCCGATTTAGAAACAT+CGG | - | chr4_1:83935266-83935285 | None:intergenic | 30.0% | |
| TTCTAAATCGGACAAAATTG+TGG | + | chr4_1:83935270-83935289 | Msa0579260:CDS | 30.0% | |
| ! | TGCAAATGATTTTCTCCTTA+GGG | - | chr4_1:83935604-83935623 | None:intergenic | 30.0% |
| TCAGAAGGATATAATGAACT+TGG | + | chr4_1:83935823-83935842 | Msa0579260:CDS | 30.0% | |
| TTAATGACTATCAGAAAAGC+CGG | + | chr4_1:83935909-83935928 | Msa0579260:CDS | 30.0% | |
| ATCCTTTATGATCTGATCTT+CGG | - | chr4_1:83936110-83936129 | None:intergenic | 30.0% | |
| !! | AAGCCAGCATTTTTATTTGA+TGG | + | chr4_1:83936319-83936338 | Msa0579260:CDS | 30.0% |
| CTACCATCAAATAAAAATGC+TGG | - | chr4_1:83936325-83936344 | None:intergenic | 30.0% | |
| !! | CAGCATTTTTATTTGATGGT+AGG | + | chr4_1:83936323-83936342 | Msa0579260:CDS | 30.0% |
| ! | ATTTGATGGTAGGAATGTTA+TGG | + | chr4_1:83936333-83936352 | Msa0579260:CDS | 30.0% |
| TTCTCCATCTTCTCTATACA+AGG | + | chr4_1:83934109-83934128 | Msa0579260:five_prime_UTR | 35.0% | |
| ! | CTGTCACAAGATCTTTTCTT+AGG | + | chr4_1:83934177-83934196 | Msa0579260:intron | 35.0% |
| CTATGTTTGAGAATGTCCTA+TGG | + | chr4_1:83934376-83934395 | Msa0579260:intron | 35.0% | |
| !! | AAAATTTGTTGCATTGGAGC+TGG | + | chr4_1:83934929-83934948 | Msa0579260:CDS | 35.0% |
| AACACACCAACAAAAACTCA+TGG | + | chr4_1:83935181-83935200 | Msa0579260:CDS | 35.0% | |
| AGAGGATTCTGACTCATAAT+AGG | + | chr4_1:83935335-83935354 | Msa0579260:CDS | 35.0% | |
| ! | GTGCAAATGATTTTCTCCTT+AGG | - | chr4_1:83935605-83935624 | None:intergenic | 35.0% |
| AAATCATTTGCACCAATCTG+TGG | + | chr4_1:83935612-83935631 | Msa0579260:CDS | 35.0% | |
| ACACTAGCATTCAAGAACTT+AGG | - | chr4_1:83935782-83935801 | None:intergenic | 35.0% | |
| AAGTTCTTGAATGCTAGTGT+TGG | + | chr4_1:83935782-83935801 | Msa0579260:CDS | 35.0% | |
| !!! | TTGAATGCTAGTGTTGGTTT+TGG | + | chr4_1:83935788-83935807 | Msa0579260:CDS | 35.0% |
| GTCTATATTTGCGAGTGTAA+TGG | + | chr4_1:83935845-83935864 | Msa0579260:CDS | 35.0% | |
| TTCATGTGGTAGCAAATTAC+TGG | + | chr4_1:83935870-83935889 | Msa0579260:CDS | 35.0% | |
| TTACTGGAAGCAAGTGATTA+AGG | + | chr4_1:83935886-83935905 | Msa0579260:CDS | 35.0% | |
| ! | TCTAAGAAGATTGCTGTTCT+TGG | + | chr4_1:83935974-83935993 | Msa0579260:CDS | 35.0% |
| TCTTGGTTTCTCTTTCAAGA+AGG | + | chr4_1:83935991-83936010 | Msa0579260:CDS | 35.0% | |
| TACCGAAGATCAGATCATAA+AGG | + | chr4_1:83936105-83936124 | Msa0579260:CDS | 35.0% | |
| GTCGATGAAGAAATTCGATA+AGG | + | chr4_1:83936132-83936151 | Msa0579260:CDS | 35.0% | |
| TGTTTGCATTATGACTGAGT+GGG | + | chr4_1:83936249-83936268 | Msa0579260:CDS | 35.0% | |
| ATCTTGTGACAGAGACACAA+AGG | - | chr4_1:83934169-83934188 | None:intergenic | 40.0% | |
| AAGCGGAATGTTTCTTGACA+CGG | - | chr4_1:83934701-83934720 | None:intergenic | 40.0% | |
| ATCTTCATGTCACACAGTGA+AGG | + | chr4_1:83934881-83934900 | Msa0579260:intron | 40.0% | |
| TGCAATCTTAGGACACTTCA+AGG | - | chr4_1:83934987-83935006 | None:intergenic | 40.0% | |
| ! | CCAAGACCATGAGTTTTTGT+TGG | - | chr4_1:83935190-83935209 | None:intergenic | 40.0% |
| CCAACAAAAACTCATGGTCT+TGG | + | chr4_1:83935187-83935206 | Msa0579260:CDS | 40.0% | |
| ! | AAGCGGCTGATTTAACATAC+TGG | + | chr4_1:83935218-83935237 | Msa0579260:CDS | 40.0% |
| ! | AGCGGCTGATTTAACATACT+GGG | + | chr4_1:83935219-83935238 | Msa0579260:CDS | 40.0% |
| ! | GATCGCCGATGTTTCTAAAT+CGG | + | chr4_1:83935258-83935277 | Msa0579260:CDS | 40.0% |
| ATTGCTTCAGCTGTTCTAAC+AGG | - | chr4_1:83935313-83935332 | None:intergenic | 40.0% | |
| AAACCCTGAATTTCTTGCTG+AGG | + | chr4_1:83935384-83935403 | Msa0579260:CDS | 40.0% | |
| AACCCTGAATTTCTTGCTGA+GGG | + | chr4_1:83935385-83935404 | Msa0579260:CDS | 40.0% | |
| TACCCTCAGCAAGAAATTCA+GGG | - | chr4_1:83935390-83935409 | None:intergenic | 40.0% | |
| ! | AATCAAAGACCTTTTCAGCC+CGG | + | chr4_1:83935496-83935515 | Msa0579260:CDS | 40.0% |
| ! | TCTATAGCCTTTTGTCCTTC+TGG | - | chr4_1:83935551-83935570 | None:intergenic | 40.0% |
| TTATGCTAATTGGGTCCCTA+AGG | + | chr4_1:83935586-83935605 | Msa0579260:CDS | 40.0% | |
| AGAGATTCTCTGTGCCAAAA+AGG | - | chr4_1:83935669-83935688 | None:intergenic | 40.0% | |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | + | chr4_1:83935791-83935810 | Msa0579260:CDS | 40.0% |
| TTCTCTTTCAAGAAGGACAC+AGG | + | chr4_1:83935998-83936017 | Msa0579260:CDS | 40.0% | |
| ATCTGATCTTCGGTAACTTG+AGG | - | chr4_1:83936100-83936119 | None:intergenic | 40.0% | |
| TTTATCGAAGTTGGACTTGG+TGG | - | chr4_1:83936178-83936197 | None:intergenic | 40.0% | |
| TGCTTTATCGAAGTTGGACT+TGG | - | chr4_1:83936181-83936200 | None:intergenic | 40.0% | |
| TCCAACTTCGATAAAGCAAG+TGG | + | chr4_1:83936183-83936202 | Msa0579260:CDS | 40.0% | |
| GTGTTTGCATTATGACTGAG+TGG | + | chr4_1:83936248-83936267 | Msa0579260:CDS | 40.0% | |
| GGTAGGAATGTTATGGATGT+TGG | + | chr4_1:83936340-83936359 | Msa0579260:CDS | 40.0% | |
| ! | TTATGGATGTTGGTAAGCTC+AGG | + | chr4_1:83936350-83936369 | Msa0579260:CDS | 40.0% |
| ! | GTTGGTAAGCTCAGGAAAAT+TGG | + | chr4_1:83936358-83936377 | Msa0579260:CDS | 40.0% |
| TTATTCCATTGGTAAGCCAC+TGG | + | chr4_1:83936390-83936409 | Msa0579260:CDS | 40.0% | |
| GATGTTTGTTCTCTCTCCTC+GGG | - | chr4_1:83934612-83934631 | None:intergenic | 45.0% | |
| CGATGTTTGTTCTCTCTCCT+CGG | - | chr4_1:83934613-83934632 | None:intergenic | 45.0% | |
| TGCATTGGAGCTGGATATGT+TGG | + | chr4_1:83934938-83934957 | Msa0579260:CDS | 45.0% | |
| ATTGGAGCTGGATATGTTGG+TGG | + | chr4_1:83934941-83934960 | Msa0579260:CDS | 45.0% | |
| !! | ATATGTTGGTGGTCCCACAA+TGG | + | chr4_1:83934952-83934971 | Msa0579260:CDS | 45.0% |
| AAGGCAATCACAGCCATTGT+GGG | - | chr4_1:83934968-83934987 | None:intergenic | 45.0% | |
| TCCTAAGATTGCAGTAACCG+TGG | + | chr4_1:83934994-83935013 | Msa0579260:CDS | 45.0% | |
| ACCACGGTTACTGCAATCTT+AGG | - | chr4_1:83934998-83935017 | None:intergenic | 45.0% | |
| ! | ATTTCAGCGCCGAGAATCAA+CGG | + | chr4_1:83935022-83935041 | Msa0579260:CDS | 45.0% |
| !! | CTGTTCCAACCGTTGATTCT+CGG | - | chr4_1:83935034-83935053 | None:intergenic | 45.0% |
| ! | CCACTTCAGTGCTGAAGAAA+AGG | - | chr4_1:83935120-83935139 | None:intergenic | 45.0% |
| !! | CCTTTTCTTCAGCACTGAAG+TGG | + | chr4_1:83935117-83935136 | Msa0579260:CDS | 45.0% |
| ! | AAAACTCATGGTCTTGGAGC+CGG | + | chr4_1:83935193-83935212 | Msa0579260:CDS | 45.0% |
| ! | TGTTAAATCAGCCGCTTTGC+CGG | - | chr4_1:83935215-83935234 | None:intergenic | 45.0% |
| GAACAGCTGAAGCAATTGAG+AGG | + | chr4_1:83935317-83935336 | Msa0579260:CDS | 45.0% | |
| GTACCCTCAGCAAGAAATTC+AGG | - | chr4_1:83935391-83935410 | None:intergenic | 45.0% | |
| TCAGCACTATGTGAAGCAAC+TGG | + | chr4_1:83935704-83935723 | Msa0579260:CDS | 45.0% | |
| !! | AGCAACTGGTGCTGATATCT+CGG | + | chr4_1:83935718-83935737 | Msa0579260:CDS | 45.0% |
| !! | TCGGAGGTATCACACTCAAT+CGG | + | chr4_1:83935737-83935756 | Msa0579260:CDS | 45.0% |
| CGAGTGTAATGGTCTTCATG+TGG | + | chr4_1:83935856-83935875 | Msa0579260:CDS | 45.0% | |
| CAACAACTCGGTTCACAAAC+CGG | - | chr4_1:83935931-83935950 | None:intergenic | 45.0% | |
| TGAACATGGACGCAACAACT+CGG | - | chr4_1:83935943-83935962 | None:intergenic | 45.0% | |
| TGTTGCGTCCATGTTCAACA+CGG | + | chr4_1:83935946-83935965 | Msa0579260:CDS | 45.0% | |
| AGAAGCAACCGTGTTGAACA+TGG | - | chr4_1:83935957-83935976 | None:intergenic | 45.0% | |
| ! | GATGTGTGCAAGGGTTTGTT+GGG | + | chr4_1:83936046-83936065 | Msa0579260:CDS | 45.0% |
| !! | CAAGGGTTTGTTGGGAGATA+AGG | + | chr4_1:83936054-83936073 | Msa0579260:CDS | 45.0% |
| ! | GTTTGTTGGGAGATAAGGCA+AGG | + | chr4_1:83936059-83936078 | Msa0579260:CDS | 45.0% |
| GCCACTTGCTTTATCGAAGT+TGG | - | chr4_1:83936187-83936206 | None:intergenic | 45.0% | |
| TTCGATAAAGCAAGTGGCTG+TGG | + | chr4_1:83936189-83936208 | Msa0579260:CDS | 45.0% | |
| TAAAGCAAGTGGCTGTGGTT+TGG | + | chr4_1:83936194-83936213 | Msa0579260:CDS | 45.0% | |
| AAAGCAAGTGGCTGTGGTTT+GGG | + | chr4_1:83936195-83936214 | Msa0579260:CDS | 45.0% | |
| ! | TGTGGTTTGGGATGCTTATG+AGG | + | chr4_1:83936207-83936226 | Msa0579260:CDS | 45.0% |
| ! | GATTCCTTTTATGCCACTGC+AGG | - | chr4_1:83936436-83936455 | None:intergenic | 45.0% |
| !! | AATAATATAATTTATAAAAG+CGG | - | chr4_1:83934718-83934737 | None:intergenic | 5.0% |
| !! | AAAAATGTTTAAATATAATA+GGG | - | chr4_1:83936480-83936499 | None:intergenic | 5.0% |
| !! | AATATTGATAAAAAATTAAT+TGG | + | chr4_1:83936672-83936691 | Msa0579260:three_prime_UTR | 5.0% |
| CAAGGCAATCACAGCCATTG+TGG | - | chr4_1:83934969-83934988 | None:intergenic | 50.0% | |
| ! | TCAAGACCTGGCTCGTAGAT+CGG | - | chr4_1:83935067-83935086 | None:intergenic | 50.0% |
| CATACTGGGAGAGTTCTGCT+CGG | + | chr4_1:83935233-83935252 | Msa0579260:CDS | 50.0% | |
| ATCGTGTCCTAATCGGAGGT+AGG | + | chr4_1:83935519-83935538 | Msa0579260:CDS | 50.0% | |
| TCGTGTCCTAATCGGAGGTA+GGG | + | chr4_1:83935520-83935539 | Msa0579260:CDS | 50.0% | |
| GGAGACACCAGAAGGACAAA+AGG | + | chr4_1:83935541-83935560 | Msa0579260:CDS | 50.0% | |
| GTCTGCTGAGCTCTCTAAAC+TGG | + | chr4_1:83935634-83935653 | Msa0579260:CDS | 50.0% | |
| ! | ACTGGCTGCTAACGCCTTTT+TGG | + | chr4_1:83935652-83935671 | Msa0579260:CDS | 50.0% |
| !! | AACTGGTGCTGATATCTCGG+AGG | + | chr4_1:83935721-83935740 | Msa0579260:CDS | 50.0% |
| ACTCAATCGGAACAGACTCG+AGG | + | chr4_1:83935750-83935769 | Msa0579260:CDS | 50.0% | |
| ATCGGAACAGACTCGAGGAT+TGG | + | chr4_1:83935755-83935774 | Msa0579260:CDS | 50.0% | |
| TGGTGGCTCTTGCTTTCAGA+AGG | + | chr4_1:83935808-83935827 | Msa0579260:CDS | 50.0% | |
| AGAAGGACACAGGCGATACA+AGG | + | chr4_1:83936008-83936027 | Msa0579260:CDS | 50.0% | |
| GAAGGACACAGGCGATACAA+GGG | + | chr4_1:83936009-83936028 | Msa0579260:CDS | 50.0% | |
| CGATGTGTGCAAGGGTTTGT+TGG | + | chr4_1:83936045-83936064 | Msa0579260:CDS | 50.0% | |
| ! | CTTGGTGGTTGAAGATGAGC+AGG | - | chr4_1:83936163-83936182 | None:intergenic | 50.0% |
| ! | GGTTTGGGATGCTTATGAGG+CGG | + | chr4_1:83936210-83936229 | Msa0579260:CDS | 50.0% |
| TGGATCCAGTGGCTTACCAA+TGG | - | chr4_1:83936398-83936417 | None:intergenic | 50.0% | |
| TTGGTAAGCCACTGGATCCA+TGG | + | chr4_1:83936398-83936417 | Msa0579260:CDS | 50.0% | |
| CATGCCTGCAGTGGCATAAA+AGG | + | chr4_1:83936429-83936448 | Msa0579260:exon | 50.0% | |
| GAGTGTGAACAATGGTCCCG+AGG | + | chr4_1:83934593-83934612 | Msa0579260:intron | 55.0% | |
| ! | CGGCGCTGAAATATCGACCA+CGG | - | chr4_1:83935014-83935033 | None:intergenic | 55.0% |
| TTCACCACGGCTTCAAGACC+TGG | - | chr4_1:83935079-83935098 | None:intergenic | 55.0% | |
| AGGTCTTGAAGCCGTGGTGA+AGG | + | chr4_1:83935078-83935097 | Msa0579260:CDS | 55.0% | |
| AGCCCGGATCGTGTCCTAAT+CGG | + | chr4_1:83935512-83935531 | Msa0579260:CDS | 55.0% | |
| CTCCGATTAGGACACGATCC+GGG | - | chr4_1:83935517-83935536 | None:intergenic | 55.0% | |
| CCTCCGATTAGGACACGATC+CGG | - | chr4_1:83935518-83935537 | None:intergenic | 55.0% | |
| GTGTCTCCCTACCTCCGATT+AGG | - | chr4_1:83935529-83935548 | None:intergenic | 55.0% | |
| GAGCTCAGCAGACCACAGAT+TGG | - | chr4_1:83935627-83935646 | None:intergenic | 55.0% | |
| ! | AGGCGATACAAGGGAAGCAC+CGG | + | chr4_1:83936018-83936037 | Msa0579260:CDS | 55.0% |
| ACCGGCTATCGATGTGTGCA+AGG | + | chr4_1:83936036-83936055 | Msa0579260:CDS | 55.0% | |
| CCCTTGCACACATCGATAGC+CGG | - | chr4_1:83936040-83936059 | None:intergenic | 55.0% | |
| CCGGCTATCGATGTGTGCAA+GGG | + | chr4_1:83936037-83936056 | Msa0579260:CDS | 55.0% | |
| GAGGCGGTGAAAGATGCACA+CGG | + | chr4_1:83936226-83936245 | Msa0579260:CDS | 55.0% | |
| TCCTTGAGCCATGGATCCAG+TGG | - | chr4_1:83936409-83936428 | None:intergenic | 55.0% | |
| ! | CAGCGCCGAGAATCAACGGT+TGG | + | chr4_1:83935026-83935045 | Msa0579260:CDS | 60.0% |
| ! | CTGGCTCGTAGATCGGTAGG+TGG | - | chr4_1:83935060-83935079 | None:intergenic | 60.0% |
| CACCTACCGATCTACGAGCC+AGG | + | chr4_1:83935058-83935077 | Msa0579260:CDS | 60.0% | |
| ! | GACCTGGCTCGTAGATCGGT+AGG | - | chr4_1:83935063-83935082 | None:intergenic | 60.0% |
| ! | AAGCCGTGGTGAAGGAGTGC+AGG | + | chr4_1:83935086-83935105 | Msa0579260:CDS | 60.0% |
| ! | AGCCGTGGTGAAGGAGTGCA+GGG | + | chr4_1:83935087-83935106 | Msa0579260:CDS | 60.0% |
| TCCCCTGCACTCCTTCACCA+CGG | - | chr4_1:83935092-83935111 | None:intergenic | 60.0% | |
| ! | TGGTGAAGGAGTGCAGGGGA+AGG | + | chr4_1:83935092-83935111 | Msa0579260:CDS | 60.0% |
| ! | TGGTCTTGGAGCCGGCAAAG+CGG | + | chr4_1:83935201-83935220 | Msa0579260:CDS | 60.0% |
| GGACACGATCCGGGCTGAAA+AGG | - | chr4_1:83935508-83935527 | None:intergenic | 60.0% | |
| CCGGATCGTGTCCTAATCGG+AGG | + | chr4_1:83935515-83935534 | Msa0579260:CDS | 60.0% | |
| GGAGGTAGGGAGACACCAGA+AGG | + | chr4_1:83935533-83935552 | Msa0579260:CDS | 60.0% | |
| GCCACTGGATCCATGGCTCA+AGG | + | chr4_1:83936405-83936424 | Msa0579260:CDS | 60.0% | |
| GCAGGCATGTCCTTGAGCCA+TGG | - | chr4_1:83936418-83936437 | None:intergenic | 60.0% | |
| GCTCAAGGACATGCCTGCAG+TGG | + | chr4_1:83936420-83936439 | Msa0579260:CDS | 60.0% | |
| CGAGCCAGGTCTTGAAGCCG+TGG | + | chr4_1:83935072-83935091 | Msa0579260:CDS | 65.0% | |
| ! | GCCGTGGTGAAGGAGTGCAG+GGG | + | chr4_1:83935088-83935107 | Msa0579260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83934092 | 83936695 | 83934092 | ID=Msa0579260;Name=Msa0579260 |
| chr4_1 | mRNA | 83934092 | 83936695 | 83934092 | ID=Msa0579260-mRNA-1;Parent=Msa0579260;Name=Msa0579260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|0.5|0.33|3|248|480 |
| chr4_1 | exon | 83934092 | 83934130 | 83934092 | ID=Msa0579260-mRNA-1:exon:30686;Parent=Msa0579260-mRNA-1 |
| chr4_1 | exon | 83934898 | 83935406 | 83934898 | ID=Msa0579260-mRNA-1:exon:30687;Parent=Msa0579260-mRNA-1 |
| chr4_1 | exon | 83935489 | 83936695 | 83935489 | ID=Msa0579260-mRNA-1:exon:30688;Parent=Msa0579260-mRNA-1 |
| chr4_1 | five_prime_UTR | 83934092 | 83934130 | 83934092 | ID=Msa0579260-mRNA-1:five_prime_utr;Parent=Msa0579260-mRNA-1 |
| chr4_1 | five_prime_UTR | 83934898 | 83934922 | 83934898 | ID=Msa0579260-mRNA-1:five_prime_utr;Parent=Msa0579260-mRNA-1 |
| chr4_1 | CDS | 83934923 | 83935406 | 83934923 | ID=Msa0579260-mRNA-1:cds;Parent=Msa0579260-mRNA-1 |
| chr4_1 | CDS | 83935489 | 83936447 | 83935489 | ID=Msa0579260-mRNA-1:cds;Parent=Msa0579260-mRNA-1 |
| chr4_1 | three_prime_UTR | 83936448 | 83936695 | 83936448 | ID=Msa0579260-mRNA-1:three_prime_utr;Parent=Msa0579260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
