Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579420 | XP_003607793.2 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579420 | sp|Q96558|UGDH1_SOYBN | 85.208 | 480 | 71 | 0 | 1 | 480 | 1 | 480 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579420 | A0A396IGS6 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0336320 | Msa0579420 | 0.802135 | 6.475772e-49 | -8.615850e-47 |
| Msa0579260 | Msa0579420 | 0.972330 | 1.369849e-134 | -8.615850e-47 |
| Msa0579420 | Msa0650700 | 0.894902 | 1.591720e-75 | -8.615850e-47 |
| Msa0579420 | Msa0650790 | 0.895914 | 6.091662e-76 | -8.615850e-47 |
| Msa0579420 | Msa1390700 | 0.803121 | 4.055165e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579420 | MtrunA17_Chr4g0043081 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Msa0579420 | MtrunA17_Chr5g0418841 | 86.902 | 481 | 62 | 1 | 1 | 480 | 1 | 481 | 0.0 | 885 |
| Msa0579420 | MtrunA17_Chr7g0218701 | 83.750 | 480 | 78 | 0 | 1 | 480 | 1 | 480 | 0.0 | 855 |
| Msa0579420 | MtrunA17_Chr4g0061311 | 73.362 | 473 | 124 | 2 | 3 | 473 | 4 | 476 | 0.0 | 728 |
| Msa0579420 | MtrunA17_Chr6g0454531 | 64.557 | 79 | 28 | 0 | 12 | 90 | 16 | 94 | 1.65e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579420 | AT3G29360.1 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0579420 | AT3G29360.2 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0579420 | AT5G39320.1 | 82.845 | 478 | 82 | 0 | 1 | 478 | 1 | 478 | 0.0 | 851 |
| Msa0579420 | AT5G15490.1 | 82.708 | 480 | 83 | 0 | 1 | 480 | 1 | 480 | 0.0 | 847 |
| Msa0579420 | AT1G26570.1 | 80.457 | 481 | 93 | 1 | 1 | 480 | 1 | 481 | 0.0 | 816 |
| Msa0579420 | AT3G01010.1 | 72.393 | 163 | 40 | 2 | 318 | 480 | 1 | 158 | 6.43e-83 | 253 |
Find 125 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGATATTTATGCTAAT+TGG | 0.091386 | 4_1:-84070314 | Msa0579420:CDS |
| GTTGGTAAGCTCAGGAAAAT+TGG | 0.259126 | 4_1:-84069532 | Msa0579420:CDS |
| CATGCCTGCAGTGGCATAAA+AGG | 0.268669 | 4_1:-84069461 | Msa0579420:exon |
| GTACCCTCAGCAAGAAATTC+AGG | 0.280180 | 4_1:+84070502 | None:intergenic |
| TCTAAGAAGATTGCTGTTCT+TGG | 0.281241 | 4_1:-84069916 | Msa0579420:CDS |
| TTACTGGAAGCAAGTGATTA+AGG | 0.289704 | 4_1:-84070004 | Msa0579420:CDS |
| CTGTTCCAACCGTTGATTCT+CGG | 0.323687 | 4_1:+84070859 | None:intergenic |
| TTGAATGCTAGTGTTGGTTT+TGG | 0.346083 | 4_1:-84070102 | Msa0579420:CDS |
| GAAAGATATTTATGCTAATT+GGG | 0.354607 | 4_1:-84070313 | Msa0579420:CDS |
| TGTTAAATCAGCCGCTTTGC+CGG | 0.358742 | 4_1:+84070678 | None:intergenic |
| AGAGGATTCTGACTCATAAT+AGG | 0.360802 | 4_1:-84070555 | Msa0579420:CDS |
| ATTGCTTCAGCTGTTCTAAC+AGG | 0.364317 | 4_1:+84070580 | None:intergenic |
| AAGCGGCTGATTTAACATAC+TGG | 0.368249 | 4_1:-84070672 | Msa0579420:CDS |
| TTCATGTGGTAGCAAATTAC+TGG | 0.378490 | 4_1:-84070020 | Msa0579420:CDS |
| TGCTTTATCGAAGTTGGACT+TGG | 0.380856 | 4_1:+84069712 | None:intergenic |
| CAAGGGTTTGTTGGGAGATA+AGG | 0.381297 | 4_1:-84069836 | Msa0579420:CDS |
| GCCACTTGCTTTATCGAAGT+TGG | 0.388159 | 4_1:+84069706 | None:intergenic |
| AAAGCAAGTGGCTGTGGTTT+GGG | 0.389789 | 4_1:-84069695 | Msa0579420:CDS |
| GTCTGCTGAGCTCTCTAAAC+TGG | 0.391926 | 4_1:-84070256 | Msa0579420:CDS |
| ACCACGGTTACTGCAATCTT+AGG | 0.392452 | 4_1:+84070895 | None:intergenic |
| GGATTTATTGTTTATTCCAT+TGG | 0.392509 | 4_1:-84069511 | Msa0579420:CDS |
| ATTTGATGGTAGGAATGTTA+TGG | 0.395140 | 4_1:-84069557 | Msa0579420:CDS |
| TAAAGCAAGTGGCTGTGGTT+TGG | 0.402728 | 4_1:-84069696 | Msa0579420:CDS |
| CCACTTCAGTGCTGAAGAAA+AGG | 0.417004 | 4_1:+84070773 | None:intergenic |
| CGATGTGTGCAAGGGTTTGT+TGG | 0.421184 | 4_1:-84069845 | Msa0579420:CDS |
| AGAGATTCTCTGTGCCAAAA+AGG | 0.424500 | 4_1:+84070224 | None:intergenic |
| TGTGGTTTGGGATGCTTATG+AGG | 0.427030 | 4_1:-84069683 | Msa0579420:CDS |
| ATCCTTTATGATCTGATCTT+CGG | 0.439079 | 4_1:+84069783 | None:intergenic |
| ATGGTGAAAATTTGTTGCAT+TGG | 0.440890 | 4_1:-84070967 | Msa0579420:CDS |
| AGCCCGGATCGTGTCCTAAT+CGG | 0.446831 | 4_1:-84070378 | Msa0579420:CDS |
| CAACAACTCGGTTCACAAAC+CGG | 0.448174 | 4_1:+84069962 | None:intergenic |
| GTCTATATTTGCGAGTGTAA+TGG | 0.448773 | 4_1:-84070045 | Msa0579420:CDS |
| GTGTCTCCCTACCTCCGATT+AGG | 0.449487 | 4_1:+84070364 | None:intergenic |
| ATTACCTTGTATAGAGAAGA+TGG | 0.450940 | 4_1:+84071777 | None:intergenic |
| TGCAATCTTAGGACACTTCA+AGG | 0.467490 | 4_1:+84070906 | None:intergenic |
| GATCGCCGATGTTTCTAAAT+CGG | 0.469822 | 4_1:-84070632 | Msa0579420:CDS |
| TGGTGGCTCTTGCTTTCAGA+AGG | 0.474973 | 4_1:-84070082 | Msa0579420:CDS |
| AAAATTTGTTGCATTGGAGC+TGG | 0.481850 | 4_1:-84070961 | Msa0579420:CDS |
| TTCTCCATCTTCTCTATACA+AGG | 0.482323 | 4_1:-84071781 | Msa0579420:intron |
| GGACACGATCCGGGCTGAAA+AGG | 0.485556 | 4_1:+84070385 | None:intergenic |
| ATCGGAACAGACTCGAGGAT+TGG | 0.486245 | 4_1:-84070135 | Msa0579420:CDS |
| TTATTCCATTGGTAAGCCAC+TGG | 0.486901 | 4_1:-84069500 | Msa0579420:CDS |
| AAGCCGTGGTGAAGGAGTGC+AGG | 0.486980 | 4_1:-84070804 | Msa0579420:CDS |
| TTCGATAAAGCAAGTGGCTG+TGG | 0.488251 | 4_1:-84069701 | Msa0579420:CDS |
| TTCACCACGGCTTCAAGACC+TGG | 0.489528 | 4_1:+84070814 | None:intergenic |
| TACCGAAGATCAGATCATAA+AGG | 0.492354 | 4_1:-84069785 | Msa0579420:CDS |
| GTCGATGAAGAAATTCGATA+AGG | 0.498139 | 4_1:-84069758 | Msa0579420:CDS |
| GATGTGTGCAAGGGTTTGTT+GGG | 0.501277 | 4_1:-84069844 | Msa0579420:CDS |
| CCCTTGCACACATCGATAGC+CGG | 0.502325 | 4_1:+84069853 | None:intergenic |
| TACCCTCAGCAAGAAATTCA+GGG | 0.503132 | 4_1:+84070503 | None:intergenic |
| AGCAACTGGTGCTGATATCT+CGG | 0.508415 | 4_1:-84070172 | Msa0579420:CDS |
| TGCATTGGAGCTGGATATGT+TGG | 0.508667 | 4_1:-84070952 | Msa0579420:CDS |
| AAAACTCATGGTCTTGGAGC+CGG | 0.509641 | 4_1:-84070697 | Msa0579420:CDS |
| TCTTGGTTTCTCTTTCAAGA+AGG | 0.511984 | 4_1:-84069899 | Msa0579420:CDS |
| TTTATCGAAGTTGGACTTGG+TGG | 0.513987 | 4_1:+84069715 | None:intergenic |
| TCAGAAGGATATAATGAACT+TGG | 0.517285 | 4_1:-84070067 | Msa0579420:CDS |
| GGTAGGAATGTTATGGATGT+TGG | 0.519091 | 4_1:-84069550 | Msa0579420:CDS |
| TCAAGACCTGGCTCGTAGAT+CGG | 0.519115 | 4_1:+84070826 | None:intergenic |
| TTATGGATGTTGGTAAGCTC+AGG | 0.521362 | 4_1:-84069540 | Msa0579420:CDS |
| GGAGACACCAGAAGGACAAA+AGG | 0.523750 | 4_1:-84070349 | Msa0579420:CDS |
| TTGGTAAGCCACTGGATCCA+TGG | 0.524811 | 4_1:-84069492 | Msa0579420:CDS |
| TTATGCTAATTGGGTCCCTA+AGG | 0.524851 | 4_1:-84070304 | Msa0579420:CDS |
| AGAAGGACACAGGCGATACA+AGG | 0.525027 | 4_1:-84069882 | Msa0579420:CDS |
| CTTGGTGGTTGAAGATGAGC+AGG | 0.525970 | 4_1:+84069730 | None:intergenic |
| ACCGGCTATCGATGTGTGCA+AGG | 0.530309 | 4_1:-84069854 | Msa0579420:CDS |
| ATTTCAGCGCCGAGAATCAA+CGG | 0.534356 | 4_1:-84070868 | Msa0579420:CDS |
| CAAGGCAATCACAGCCATTG+TGG | 0.541163 | 4_1:+84070924 | None:intergenic |
| TTCTAAATCGGACAAAATTG+TGG | 0.542076 | 4_1:-84070620 | Msa0579420:CDS |
| AACCCTGAATTTCTTGCTGA+GGG | 0.543013 | 4_1:-84070505 | Msa0579420:intron |
| AGGTCTTGAAGCCGTGGTGA+AGG | 0.543599 | 4_1:-84070812 | Msa0579420:CDS |
| TTAATGACTATCAGAAAAGC+CGG | 0.546119 | 4_1:-84069981 | Msa0579420:CDS |
| TCGGAGGTATCACACTCAAT+CGG | 0.548115 | 4_1:-84070153 | Msa0579420:CDS |
| GAGCTCAGCAGACCACAGAT+TGG | 0.552085 | 4_1:+84070266 | None:intergenic |
| AAGGCAATCACAGCCATTGT+GGG | 0.553236 | 4_1:+84070925 | None:intergenic |
| TTCTCTTTCAAGAAGGACAC+AGG | 0.554715 | 4_1:-84069892 | Msa0579420:CDS |
| TCCTTGAGCCATGGATCCAG+TGG | 0.560633 | 4_1:+84069484 | None:intergenic |
| TGGATCCAGTGGCTTACCAA+TGG | 0.562663 | 4_1:+84069495 | None:intergenic |
| CCTCCGATTAGGACACGATC+CGG | 0.564937 | 4_1:+84070375 | None:intergenic |
| ATTGGAGCTGGATATGTTGG+TGG | 0.565995 | 4_1:-84070949 | Msa0579420:CDS |
| TCGTGTCCTAATCGGAGGTA+GGG | 0.567068 | 4_1:-84070370 | Msa0579420:CDS |
| GCAGGCATGTCCTTGAGCCA+TGG | 0.569217 | 4_1:+84069475 | None:intergenic |
| CAGCGCCGAGAATCAACGGT+TGG | 0.569257 | 4_1:-84070864 | Msa0579420:CDS |
| AGGCGATACAAGGGAAGCAC+CGG | 0.573278 | 4_1:-84069872 | Msa0579420:CDS |
| TGGTGAAGGAGTGCAGGGGA+AGG | 0.576100 | 4_1:-84070798 | Msa0579420:CDS |
| AGCGGCTGATTTAACATACT+GGG | 0.577833 | 4_1:-84070671 | Msa0579420:CDS |
| CACCTACCGATCTACGAGCC+AGG | 0.578252 | 4_1:-84070832 | Msa0579420:CDS |
| AAACCCTGAATTTCTTGCTG+AGG | 0.578960 | 4_1:-84070506 | Msa0579420:CDS |
| ATCTGATCTTCGGTAACTTG+AGG | 0.579881 | 4_1:+84069793 | None:intergenic |
| TCAGCACTATGTGAAGCAAC+TGG | 0.581495 | 4_1:-84070186 | Msa0579420:CDS |
| ACACTAGCATTCAAGAACTT+AGG | 0.584911 | 4_1:+84070111 | None:intergenic |
| AAGTTCTTGAATGCTAGTGT+TGG | 0.587122 | 4_1:-84070108 | Msa0579420:CDS |
| GTTTGTTGGGAGATAAGGCA+AGG | 0.587768 | 4_1:-84069831 | Msa0579420:CDS |
| CGAGCCAGGTCTTGAAGCCG+TGG | 0.588293 | 4_1:-84070818 | Msa0579420:CDS |
| AGAAGCAACCGTGTTGAACA+TGG | 0.590789 | 4_1:+84069936 | None:intergenic |
| GCCACTGGATCCATGGCTCA+AGG | 0.597097 | 4_1:-84069485 | Msa0579420:CDS |
| TCCAACTTCGATAAAGCAAG+TGG | 0.600253 | 4_1:-84069707 | Msa0579420:CDS |
| TTTGTCCGATTTAGAAACAT+CGG | 0.602624 | 4_1:+84070627 | None:intergenic |
| AGCCGTGGTGAAGGAGTGCA+GGG | 0.608786 | 4_1:-84070803 | Msa0579420:CDS |
| AAATCATTTGCACCAATCTG+TGG | 0.612903 | 4_1:-84070278 | Msa0579420:CDS |
| ATCGTGTCCTAATCGGAGGT+AGG | 0.615001 | 4_1:-84070371 | Msa0579420:CDS |
| GCTCAAGGACATGCCTGCAG+TGG | 0.625363 | 4_1:-84069470 | Msa0579420:CDS |
| TCCCCTGCACTCCTTCACCA+CGG | 0.628514 | 4_1:+84070801 | None:intergenic |
| TGAACATGGACGCAACAACT+CGG | 0.630690 | 4_1:+84069950 | None:intergenic |
| CCGGCTATCGATGTGTGCAA+GGG | 0.631110 | 4_1:-84069853 | Msa0579420:CDS |
| CTCCGATTAGGACACGATCC+GGG | 0.633554 | 4_1:+84070376 | None:intergenic |
| GACCTGGCTCGTAGATCGGT+AGG | 0.635406 | 4_1:+84070830 | None:intergenic |
| TGTTGCGTCCATGTTCAACA+CGG | 0.638044 | 4_1:-84069944 | Msa0579420:CDS |
| GAAGGACACAGGCGATACAA+GGG | 0.639231 | 4_1:-84069881 | Msa0579420:CDS |
| GAACAGCTGAAGCAATTGAG+AGG | 0.641777 | 4_1:-84070573 | Msa0579420:CDS |
| GGAGGTAGGGAGACACCAGA+AGG | 0.655737 | 4_1:-84070357 | Msa0579420:CDS |
| CCGGATCGTGTCCTAATCGG+AGG | 0.664959 | 4_1:-84070375 | Msa0579420:CDS |
| TCCTAAGATTGCAGTAACCG+TGG | 0.667449 | 4_1:-84070896 | Msa0579420:CDS |
| CGAGTGTAATGGTCTTCATG+TGG | 0.667527 | 4_1:-84070034 | Msa0579420:CDS |
| ATATGTTGGTGGTCCCACAA+TGG | 0.680415 | 4_1:-84070938 | Msa0579420:CDS |
| CATACTGGGAGAGTTCTGCT+CGG | 0.681592 | 4_1:-84070657 | Msa0579420:CDS |
| CTGGCTCGTAGATCGGTAGG+TGG | 0.689180 | 4_1:+84070833 | None:intergenic |
| TGGTCTTGGAGCCGGCAAAG+CGG | 0.691470 | 4_1:-84070689 | Msa0579420:CDS |
| ACTCAATCGGAACAGACTCG+AGG | 0.702881 | 4_1:-84070140 | Msa0579420:CDS |
| AACTGGTGCTGATATCTCGG+AGG | 0.704506 | 4_1:-84070169 | Msa0579420:CDS |
| GTGTTTGCATTATGACTGAG+TGG | 0.706540 | 4_1:-84069642 | Msa0579420:CDS |
| TGTTTGCATTATGACTGAGT+GGG | 0.707780 | 4_1:-84069641 | Msa0579420:CDS |
| CGGCGCTGAAATATCGACCA+CGG | 0.712301 | 4_1:+84070879 | None:intergenic |
| GCCGTGGTGAAGGAGTGCAG+GGG | 0.744462 | 4_1:-84070802 | Msa0579420:CDS |
| GGTTTGGGATGCTTATGAGG+CGG | 0.748746 | 4_1:-84069680 | Msa0579420:CDS |
| GAGGCGGTGAAAGATGCACA+CGG | 0.755151 | 4_1:-84069664 | Msa0579420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATGTTTAAATATAAT+AGG | + | chr4_1:84071606-84071625 | None:intergenic | 10.0% |
| !! | AATAATACTATTAAGAATTG+TGG | + | chr4_1:84069394-84069413 | None:intergenic | 15.0% |
| !! | TAAAAGAATATTAAATCCAT+AGG | + | chr4_1:84069520-84069539 | None:intergenic | 15.0% |
| !!! | TAGAATGATTTTTTAATAAC+AGG | + | chr4_1:84069570-84069589 | None:intergenic | 15.0% |
| !!! | TTTTATCAATATTCAATGAA+AGG | + | chr4_1:84071790-84071809 | None:intergenic | 15.0% |
| !! | TGGCATATACTAATAAAATA+AGG | + | chr4_1:84069374-84069393 | None:intergenic | 20.0% |
| !!! | GTCCATAAATTATTCAATTT+TGG | - | chr4_1:84069868-84069887 | Msa0579420:CDS | 20.0% |
| !! | GACCAAAATTGAATAATTTA+TGG | + | chr4_1:84069873-84069892 | None:intergenic | 20.0% |
| !! | TACATTCAAATGCTTATTAT+TGG | + | chr4_1:84069900-84069919 | None:intergenic | 20.0% |
| !!! | TACTTTGAAATGCTTATTAT+TGG | + | chr4_1:84069948-84069967 | None:intergenic | 20.0% |
| !! | ATATACATTATTGTTATGCA+TGG | - | chr4_1:84069968-84069987 | Msa0579420:CDS | 20.0% |
| !! | AAGTTAAGAAAAAGCAAAAA+TGG | - | chr4_1:84070029-84070048 | Msa0579420:CDS | 20.0% |
| !!! | AATTTTATCTGTAATAGGTA+CGG | - | chr4_1:84070597-84070616 | Msa0579420:CDS | 20.0% |
| !! | TGAAAGATATTTATGCTAAT+TGG | - | chr4_1:84070701-84070720 | Msa0579420:CDS | 20.0% |
| !! | GAAAGATATTTATGCTAATT+GGG | - | chr4_1:84070702-84070721 | Msa0579420:CDS | 20.0% |
| !!! | GCATATTGTCATAAATTTTT+TGG | + | chr4_1:84071422-84071441 | None:intergenic | 20.0% |
| ! | GAATATTCAATTGTACATGA+AGG | + | chr4_1:84069482-84069501 | None:intergenic | 25.0% |
| ! | ACAGACACAACATATTTATA+AGG | + | chr4_1:84069795-84069814 | None:intergenic | 25.0% |
| ! | AATTCCTGAAATAGTTAGTT+AGG | - | chr4_1:84070536-84070555 | Msa0579420:CDS | 25.0% |
| ! | ATAACCTAACTAACTATTTC+AGG | + | chr4_1:84070543-84070562 | None:intergenic | 25.0% |
| !! | GTACCAATTTTATCTGTAAT+AGG | - | chr4_1:84070592-84070611 | Msa0579420:CDS | 25.0% |
| ! | GTACCTATTACAGATAAAAT+TGG | + | chr4_1:84070598-84070617 | None:intergenic | 25.0% |
| ! | GGATTTATTGTTTATTCCAT+TGG | - | chr4_1:84071504-84071523 | Msa0579420:intron | 25.0% |
| ATTACCTTGTATAGAGAAGA+TGG | + | chr4_1:84069241-84069260 | None:intergenic | 30.0% | |
| AAAATAAGGTAGCAAGATCT+AGG | + | chr4_1:84069360-84069379 | None:intergenic | 30.0% | |
| AGTACATATGATTTCTGACA+CGG | - | chr4_1:84069645-84069664 | Msa0579420:CDS | 30.0% | |
| AGATCACACTCAATGTTATA+TGG | + | chr4_1:84069681-84069700 | None:intergenic | 30.0% | |
| AATACATTGAGTGTGAACAA+TGG | - | chr4_1:84069710-84069729 | Msa0579420:CDS | 30.0% | |
| !! | ATGGTGAAAATTTGTTGCAT+TGG | - | chr4_1:84070048-84070067 | Msa0579420:CDS | 30.0% |
| TTTGTCCGATTTAGAAACAT+CGG | + | chr4_1:84070391-84070410 | None:intergenic | 30.0% | |
| TTCTAAATCGGACAAAATTG+TGG | - | chr4_1:84070395-84070414 | Msa0579420:CDS | 30.0% | |
| ! | TGCAAATGATTTTCTCCTTA+GGG | + | chr4_1:84070729-84070748 | None:intergenic | 30.0% |
| TCAGAAGGATATAATGAACT+TGG | - | chr4_1:84070948-84070967 | Msa0579420:CDS | 30.0% | |
| TTAATGACTATCAGAAAAGC+CGG | - | chr4_1:84071034-84071053 | Msa0579420:intron | 30.0% | |
| ATCCTTTATGATCTGATCTT+CGG | + | chr4_1:84071235-84071254 | None:intergenic | 30.0% | |
| !! | AAGCCAGCATTTTTATTTGA+TGG | - | chr4_1:84071444-84071463 | Msa0579420:intron | 30.0% |
| CTACCATCAAATAAAAATGC+TGG | + | chr4_1:84071450-84071469 | None:intergenic | 30.0% | |
| !! | CAGCATTTTTATTTGATGGT+AGG | - | chr4_1:84071448-84071467 | Msa0579420:intron | 30.0% |
| ! | ATTTGATGGTAGGAATGTTA+TGG | - | chr4_1:84071458-84071477 | Msa0579420:intron | 30.0% |
| TTCTCCATCTTCTCTATACA+AGG | - | chr4_1:84069234-84069253 | Msa0579420:three_prime_UTR | 35.0% | |
| ! | CTGTCACAAGATCTTTTCTT+AGG | - | chr4_1:84069302-84069321 | Msa0579420:three_prime_UTR | 35.0% |
| CTATGTTTGAGAATGTCCTA+TGG | - | chr4_1:84069501-84069520 | Msa0579420:CDS | 35.0% | |
| !! | AAAATTTGTTGCATTGGAGC+TGG | - | chr4_1:84070054-84070073 | Msa0579420:CDS | 35.0% |
| AACACACCAACAAAAACTCA+TGG | - | chr4_1:84070306-84070325 | Msa0579420:CDS | 35.0% | |
| AGAGGATTCTGACTCATAAT+AGG | - | chr4_1:84070460-84070479 | Msa0579420:intron | 35.0% | |
| ! | GTGCAAATGATTTTCTCCTT+AGG | + | chr4_1:84070730-84070749 | None:intergenic | 35.0% |
| AAATCATTTGCACCAATCTG+TGG | - | chr4_1:84070737-84070756 | Msa0579420:CDS | 35.0% | |
| ACACTAGCATTCAAGAACTT+AGG | + | chr4_1:84070907-84070926 | None:intergenic | 35.0% | |
| AAGTTCTTGAATGCTAGTGT+TGG | - | chr4_1:84070907-84070926 | Msa0579420:CDS | 35.0% | |
| !!! | TTGAATGCTAGTGTTGGTTT+TGG | - | chr4_1:84070913-84070932 | Msa0579420:CDS | 35.0% |
| GTCTATATTTGCGAGTGTAA+TGG | - | chr4_1:84070970-84070989 | Msa0579420:CDS | 35.0% | |
| TTCATGTGGTAGCAAATTAC+TGG | - | chr4_1:84070995-84071014 | Msa0579420:five_prime_UTR | 35.0% | |
| TTACTGGAAGCAAGTGATTA+AGG | - | chr4_1:84071011-84071030 | Msa0579420:intron | 35.0% | |
| ! | TCTAAGAAGATTGCTGTTCT+TGG | - | chr4_1:84071099-84071118 | Msa0579420:intron | 35.0% |
| TCTTGGTTTCTCTTTCAAGA+AGG | - | chr4_1:84071116-84071135 | Msa0579420:intron | 35.0% | |
| TACCGAAGATCAGATCATAA+AGG | - | chr4_1:84071230-84071249 | Msa0579420:intron | 35.0% | |
| GTCGATGAAGAAATTCGATA+AGG | - | chr4_1:84071257-84071276 | Msa0579420:intron | 35.0% | |
| TGTTTGCATTATGACTGAGT+GGG | - | chr4_1:84071374-84071393 | Msa0579420:intron | 35.0% | |
| ATCTTGTGACAGAGACACAA+AGG | + | chr4_1:84069294-84069313 | None:intergenic | 40.0% | |
| AAGCGGAATGTTTCTTGACA+CGG | + | chr4_1:84069826-84069845 | None:intergenic | 40.0% | |
| ATCTTCATGTCACACAGTGA+AGG | - | chr4_1:84070006-84070025 | Msa0579420:CDS | 40.0% | |
| TGCAATCTTAGGACACTTCA+AGG | + | chr4_1:84070112-84070131 | None:intergenic | 40.0% | |
| ! | CCAAGACCATGAGTTTTTGT+TGG | + | chr4_1:84070315-84070334 | None:intergenic | 40.0% |
| CCAACAAAAACTCATGGTCT+TGG | - | chr4_1:84070312-84070331 | Msa0579420:CDS | 40.0% | |
| ! | AAGCGGCTGATTTAACATAC+TGG | - | chr4_1:84070343-84070362 | Msa0579420:CDS | 40.0% |
| ! | AGCGGCTGATTTAACATACT+GGG | - | chr4_1:84070344-84070363 | Msa0579420:CDS | 40.0% |
| ! | GATCGCCGATGTTTCTAAAT+CGG | - | chr4_1:84070383-84070402 | Msa0579420:CDS | 40.0% |
| ATTGCTTCAGCTGTTCTAAC+AGG | + | chr4_1:84070438-84070457 | None:intergenic | 40.0% | |
| AAACCCTGAATTTCTTGCTG+AGG | - | chr4_1:84070509-84070528 | Msa0579420:CDS | 40.0% | |
| AACCCTGAATTTCTTGCTGA+GGG | - | chr4_1:84070510-84070529 | Msa0579420:CDS | 40.0% | |
| TACCCTCAGCAAGAAATTCA+GGG | + | chr4_1:84070515-84070534 | None:intergenic | 40.0% | |
| ! | AATCAAAGACCTTTTCAGCC+CGG | - | chr4_1:84070621-84070640 | Msa0579420:CDS | 40.0% |
| ! | TCTATAGCCTTTTGTCCTTC+TGG | + | chr4_1:84070676-84070695 | None:intergenic | 40.0% |
| TTATGCTAATTGGGTCCCTA+AGG | - | chr4_1:84070711-84070730 | Msa0579420:CDS | 40.0% | |
| AGAGATTCTCTGTGCCAAAA+AGG | + | chr4_1:84070794-84070813 | None:intergenic | 40.0% | |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | - | chr4_1:84070916-84070935 | Msa0579420:CDS | 40.0% |
| TTCTCTTTCAAGAAGGACAC+AGG | - | chr4_1:84071123-84071142 | Msa0579420:intron | 40.0% | |
| ATCTGATCTTCGGTAACTTG+AGG | + | chr4_1:84071225-84071244 | None:intergenic | 40.0% | |
| TTTATCGAAGTTGGACTTGG+TGG | + | chr4_1:84071303-84071322 | None:intergenic | 40.0% | |
| TGCTTTATCGAAGTTGGACT+TGG | + | chr4_1:84071306-84071325 | None:intergenic | 40.0% | |
| TCCAACTTCGATAAAGCAAG+TGG | - | chr4_1:84071308-84071327 | Msa0579420:intron | 40.0% | |
| GTGTTTGCATTATGACTGAG+TGG | - | chr4_1:84071373-84071392 | Msa0579420:intron | 40.0% | |
| GGTAGGAATGTTATGGATGT+TGG | - | chr4_1:84071465-84071484 | Msa0579420:intron | 40.0% | |
| ! | TTATGGATGTTGGTAAGCTC+AGG | - | chr4_1:84071475-84071494 | Msa0579420:intron | 40.0% |
| ! | GTTGGTAAGCTCAGGAAAAT+TGG | - | chr4_1:84071483-84071502 | Msa0579420:intron | 40.0% |
| TTATTCCATTGGTAAGCCAC+TGG | - | chr4_1:84071515-84071534 | Msa0579420:intron | 40.0% | |
| GATGTTTGTTCTCTCTCCTG+GGG | + | chr4_1:84069737-84069756 | None:intergenic | 45.0% | |
| CGATGTTTGTTCTCTCTCCT+GGG | + | chr4_1:84069738-84069757 | None:intergenic | 45.0% | |
| TCGATGTTTGTTCTCTCTCC+TGG | + | chr4_1:84069739-84069758 | None:intergenic | 45.0% | |
| TGCATTGGAGCTGGATATGT+TGG | - | chr4_1:84070063-84070082 | Msa0579420:CDS | 45.0% | |
| ATTGGAGCTGGATATGTTGG+TGG | - | chr4_1:84070066-84070085 | Msa0579420:CDS | 45.0% | |
| !! | ATATGTTGGTGGTCCCACAA+TGG | - | chr4_1:84070077-84070096 | Msa0579420:CDS | 45.0% |
| AAGGCAATCACAGCCATTGT+GGG | + | chr4_1:84070093-84070112 | None:intergenic | 45.0% | |
| TCCTAAGATTGCAGTAACCG+TGG | - | chr4_1:84070119-84070138 | Msa0579420:CDS | 45.0% | |
| ACCACGGTTACTGCAATCTT+AGG | + | chr4_1:84070123-84070142 | None:intergenic | 45.0% | |
| ! | ATTTCAGCGCCGAGAATCAA+CGG | - | chr4_1:84070147-84070166 | Msa0579420:CDS | 45.0% |
| !! | CTGTTCCAACCGTTGATTCT+CGG | + | chr4_1:84070159-84070178 | None:intergenic | 45.0% |
| ! | CCACTTCAGTGCTGAAGAAA+AGG | + | chr4_1:84070245-84070264 | None:intergenic | 45.0% |
| !! | CCTTTTCTTCAGCACTGAAG+TGG | - | chr4_1:84070242-84070261 | Msa0579420:CDS | 45.0% |
| ! | AAAACTCATGGTCTTGGAGC+CGG | - | chr4_1:84070318-84070337 | Msa0579420:CDS | 45.0% |
| ! | TGTTAAATCAGCCGCTTTGC+CGG | + | chr4_1:84070340-84070359 | None:intergenic | 45.0% |
| GAACAGCTGAAGCAATTGAG+AGG | - | chr4_1:84070442-84070461 | Msa0579420:intron | 45.0% | |
| GTACCCTCAGCAAGAAATTC+AGG | + | chr4_1:84070516-84070535 | None:intergenic | 45.0% | |
| TCAGCACTATGTGAAGCAAC+TGG | - | chr4_1:84070829-84070848 | Msa0579420:CDS | 45.0% | |
| !! | AGCAACTGGTGCTGATATCT+CGG | - | chr4_1:84070843-84070862 | Msa0579420:CDS | 45.0% |
| !! | TCGGAGGTATCACACTCAAT+CGG | - | chr4_1:84070862-84070881 | Msa0579420:CDS | 45.0% |
| CGAGTGTAATGGTCTTCATG+TGG | - | chr4_1:84070981-84071000 | Msa0579420:exon | 45.0% | |
| CAACAACTCGGTTCACAAAC+CGG | + | chr4_1:84071056-84071075 | None:intergenic | 45.0% | |
| TGAACATGGACGCAACAACT+CGG | + | chr4_1:84071068-84071087 | None:intergenic | 45.0% | |
| TGTTGCGTCCATGTTCAACA+CGG | - | chr4_1:84071071-84071090 | Msa0579420:intron | 45.0% | |
| AGAAGCAACCGTGTTGAACA+TGG | + | chr4_1:84071082-84071101 | None:intergenic | 45.0% | |
| ! | GATGTGTGCAAGGGTTTGTT+GGG | - | chr4_1:84071171-84071190 | Msa0579420:intron | 45.0% |
| !! | CAAGGGTTTGTTGGGAGATA+AGG | - | chr4_1:84071179-84071198 | Msa0579420:intron | 45.0% |
| ! | GTTTGTTGGGAGATAAGGCA+AGG | - | chr4_1:84071184-84071203 | Msa0579420:intron | 45.0% |
| GCCACTTGCTTTATCGAAGT+TGG | + | chr4_1:84071312-84071331 | None:intergenic | 45.0% | |
| TTCGATAAAGCAAGTGGCTG+TGG | - | chr4_1:84071314-84071333 | Msa0579420:intron | 45.0% | |
| TAAAGCAAGTGGCTGTGGTT+TGG | - | chr4_1:84071319-84071338 | Msa0579420:intron | 45.0% | |
| AAAGCAAGTGGCTGTGGTTT+GGG | - | chr4_1:84071320-84071339 | Msa0579420:intron | 45.0% | |
| ! | TGTGGTTTGGGATGCTTATG+AGG | - | chr4_1:84071332-84071351 | Msa0579420:intron | 45.0% |
| ! | GATTCCTTTTATGCCACTGC+AGG | + | chr4_1:84071561-84071580 | None:intergenic | 45.0% |
| !! | AATAATATAATTTATAAAAG+CGG | + | chr4_1:84069843-84069862 | None:intergenic | 5.0% |
| !! | AAAAATGTTTAAATATAATA+GGG | + | chr4_1:84071605-84071624 | None:intergenic | 5.0% |
| !! | AATATTGATAAAAAATTAAT+TGG | - | chr4_1:84071797-84071816 | Msa0579420:five_prime_UTR | 5.0% |
| CAAGGCAATCACAGCCATTG+TGG | + | chr4_1:84070094-84070113 | None:intergenic | 50.0% | |
| ! | TCAAGACCTGGCTCGTAGAT+CGG | + | chr4_1:84070192-84070211 | None:intergenic | 50.0% |
| CATACTGGGAGAGTTCTGCT+CGG | - | chr4_1:84070358-84070377 | Msa0579420:CDS | 50.0% | |
| ATCGTGTCCTAATCGGAGGT+AGG | - | chr4_1:84070644-84070663 | Msa0579420:CDS | 50.0% | |
| TCGTGTCCTAATCGGAGGTA+GGG | - | chr4_1:84070645-84070664 | Msa0579420:CDS | 50.0% | |
| GGAGACACCAGAAGGACAAA+AGG | - | chr4_1:84070666-84070685 | Msa0579420:CDS | 50.0% | |
| GTCTGCTGAGCTCTCTAAAC+TGG | - | chr4_1:84070759-84070778 | Msa0579420:CDS | 50.0% | |
| ! | ACTGGCTGCTAACGCCTTTT+TGG | - | chr4_1:84070777-84070796 | Msa0579420:CDS | 50.0% |
| !! | AACTGGTGCTGATATCTCGG+AGG | - | chr4_1:84070846-84070865 | Msa0579420:CDS | 50.0% |
| ACTCAATCGGAACAGACTCG+AGG | - | chr4_1:84070875-84070894 | Msa0579420:CDS | 50.0% | |
| ATCGGAACAGACTCGAGGAT+TGG | - | chr4_1:84070880-84070899 | Msa0579420:CDS | 50.0% | |
| TGGTGGCTCTTGCTTTCAGA+AGG | - | chr4_1:84070933-84070952 | Msa0579420:CDS | 50.0% | |
| AGAAGGACACAGGCGATACA+AGG | - | chr4_1:84071133-84071152 | Msa0579420:intron | 50.0% | |
| GAAGGACACAGGCGATACAA+GGG | - | chr4_1:84071134-84071153 | Msa0579420:intron | 50.0% | |
| CGATGTGTGCAAGGGTTTGT+TGG | - | chr4_1:84071170-84071189 | Msa0579420:intron | 50.0% | |
| ! | CTTGGTGGTTGAAGATGAGC+AGG | + | chr4_1:84071288-84071307 | None:intergenic | 50.0% |
| ! | GGTTTGGGATGCTTATGAGG+CGG | - | chr4_1:84071335-84071354 | Msa0579420:intron | 50.0% |
| TGGATCCAGTGGCTTACCAA+TGG | + | chr4_1:84071523-84071542 | None:intergenic | 50.0% | |
| TTGGTAAGCCACTGGATCCA+TGG | - | chr4_1:84071523-84071542 | Msa0579420:intron | 50.0% | |
| CATGCCTGCAGTGGCATAAA+AGG | - | chr4_1:84071554-84071573 | Msa0579420:intron | 50.0% | |
| GAGTGTGAACAATGGTCCCC+AGG | - | chr4_1:84069718-84069737 | Msa0579420:CDS | 55.0% | |
| ! | CGGCGCTGAAATATCGACCA+CGG | + | chr4_1:84070139-84070158 | None:intergenic | 55.0% |
| TTCACCACGGCTTCAAGACC+TGG | + | chr4_1:84070204-84070223 | None:intergenic | 55.0% | |
| AGGTCTTGAAGCCGTGGTGA+AGG | - | chr4_1:84070203-84070222 | Msa0579420:CDS | 55.0% | |
| AGCCCGGATCGTGTCCTAAT+CGG | - | chr4_1:84070637-84070656 | Msa0579420:CDS | 55.0% | |
| CTCCGATTAGGACACGATCC+GGG | + | chr4_1:84070642-84070661 | None:intergenic | 55.0% | |
| CCTCCGATTAGGACACGATC+CGG | + | chr4_1:84070643-84070662 | None:intergenic | 55.0% | |
| GTGTCTCCCTACCTCCGATT+AGG | + | chr4_1:84070654-84070673 | None:intergenic | 55.0% | |
| GAGCTCAGCAGACCACAGAT+TGG | + | chr4_1:84070752-84070771 | None:intergenic | 55.0% | |
| ! | AGGCGATACAAGGGAAGCAC+CGG | - | chr4_1:84071143-84071162 | Msa0579420:intron | 55.0% |
| ACCGGCTATCGATGTGTGCA+AGG | - | chr4_1:84071161-84071180 | Msa0579420:intron | 55.0% | |
| CCCTTGCACACATCGATAGC+CGG | + | chr4_1:84071165-84071184 | None:intergenic | 55.0% | |
| CCGGCTATCGATGTGTGCAA+GGG | - | chr4_1:84071162-84071181 | Msa0579420:intron | 55.0% | |
| GAGGCGGTGAAAGATGCACA+CGG | - | chr4_1:84071351-84071370 | Msa0579420:intron | 55.0% | |
| TCCTTGAGCCATGGATCCAG+TGG | + | chr4_1:84071534-84071553 | None:intergenic | 55.0% | |
| ! | CAGCGCCGAGAATCAACGGT+TGG | - | chr4_1:84070151-84070170 | Msa0579420:CDS | 60.0% |
| ! | CTGGCTCGTAGATCGGTAGG+TGG | + | chr4_1:84070185-84070204 | None:intergenic | 60.0% |
| CACCTACCGATCTACGAGCC+AGG | - | chr4_1:84070183-84070202 | Msa0579420:CDS | 60.0% | |
| ! | GACCTGGCTCGTAGATCGGT+AGG | + | chr4_1:84070188-84070207 | None:intergenic | 60.0% |
| ! | AAGCCGTGGTGAAGGAGTGC+AGG | - | chr4_1:84070211-84070230 | Msa0579420:CDS | 60.0% |
| ! | AGCCGTGGTGAAGGAGTGCA+GGG | - | chr4_1:84070212-84070231 | Msa0579420:CDS | 60.0% |
| TCCCCTGCACTCCTTCACCA+CGG | + | chr4_1:84070217-84070236 | None:intergenic | 60.0% | |
| ! | TGGTGAAGGAGTGCAGGGGA+AGG | - | chr4_1:84070217-84070236 | Msa0579420:CDS | 60.0% |
| ! | TGGTCTTGGAGCCGGCAAAG+CGG | - | chr4_1:84070326-84070345 | Msa0579420:CDS | 60.0% |
| GGACACGATCCGGGCTGAAA+AGG | + | chr4_1:84070633-84070652 | None:intergenic | 60.0% | |
| CCGGATCGTGTCCTAATCGG+AGG | - | chr4_1:84070640-84070659 | Msa0579420:CDS | 60.0% | |
| GGAGGTAGGGAGACACCAGA+AGG | - | chr4_1:84070658-84070677 | Msa0579420:CDS | 60.0% | |
| GCCACTGGATCCATGGCTCA+AGG | - | chr4_1:84071530-84071549 | Msa0579420:intron | 60.0% | |
| GCAGGCATGTCCTTGAGCCA+TGG | + | chr4_1:84071543-84071562 | None:intergenic | 60.0% | |
| GCTCAAGGACATGCCTGCAG+TGG | - | chr4_1:84071545-84071564 | Msa0579420:intron | 60.0% | |
| CGAGCCAGGTCTTGAAGCCG+TGG | - | chr4_1:84070197-84070216 | Msa0579420:CDS | 65.0% | |
| ! | GCCGTGGTGAAGGAGTGCAG+GGG | - | chr4_1:84070213-84070232 | Msa0579420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 84069217 | 84071820 | 84069217 | ID=Msa0579420;Name=Msa0579420 |
| chr4_1 | mRNA | 84069217 | 84071820 | 84069217 | ID=Msa0579420-mRNA-1;Parent=Msa0579420;Name=Msa0579420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|0.5|0.33|3|248|480 |
| chr4_1 | exon | 84069217 | 84070423 | 84069217 | ID=Msa0579420-mRNA-1:exon:30764;Parent=Msa0579420-mRNA-1 |
| chr4_1 | exon | 84070506 | 84071014 | 84070506 | ID=Msa0579420-mRNA-1:exon:30763;Parent=Msa0579420-mRNA-1 |
| chr4_1 | exon | 84071782 | 84071820 | 84071782 | ID=Msa0579420-mRNA-1:exon:30762;Parent=Msa0579420-mRNA-1 |
| chr4_1 | five_prime_UTR | 84071782 | 84071820 | 84071782 | ID=Msa0579420-mRNA-1:five_prime_utr;Parent=Msa0579420-mRNA-1 |
| chr4_1 | five_prime_UTR | 84070990 | 84071014 | 84070990 | ID=Msa0579420-mRNA-1:five_prime_utr;Parent=Msa0579420-mRNA-1 |
| chr4_1 | CDS | 84070506 | 84070989 | 84070506 | ID=Msa0579420-mRNA-1:cds;Parent=Msa0579420-mRNA-1 |
| chr4_1 | CDS | 84069465 | 84070423 | 84069465 | ID=Msa0579420-mRNA-1:cds;Parent=Msa0579420-mRNA-1 |
| chr4_1 | three_prime_UTR | 84069217 | 84069464 | 84069217 | ID=Msa0579420-mRNA-1:three_prime_utr;Parent=Msa0579420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
