Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650700 | XP_003607793.2 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650700 | sp|Q96558|UGDH1_SOYBN | 85.208 | 480 | 71 | 0 | 1 | 480 | 1 | 480 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650700 | A0A396IGS6 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0650700 | Msa0650790 | 0.995559 | 1.707464e-217 | -8.615850e-47 |
| Msa0650700 | Msa1390700 | 0.809784 | 1.594596e-50 | -8.615850e-47 |
| Msa0650700 | Msa1392910 | 0.802482 | 5.495033e-49 | -8.615850e-47 |
| Msa0213040 | Msa0650700 | 0.804991 | 1.655872e-49 | -8.615850e-47 |
| Msa0253340 | Msa0650700 | 0.804302 | 2.306340e-49 | -8.615850e-47 |
| Msa0336310 | Msa0650700 | 0.809344 | 1.981859e-50 | -8.615850e-47 |
| Msa0336320 | Msa0650700 | 0.812204 | 4.769806e-51 | -8.615850e-47 |
| Msa0579260 | Msa0650700 | 0.883521 | 4.180975e-71 | -8.615850e-47 |
| Msa0579420 | Msa0650700 | 0.894902 | 1.591720e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650700 | MtrunA17_Chr4g0043081 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Msa0650700 | MtrunA17_Chr5g0418841 | 86.902 | 481 | 62 | 1 | 1 | 480 | 1 | 481 | 0.0 | 885 |
| Msa0650700 | MtrunA17_Chr7g0218701 | 83.750 | 480 | 78 | 0 | 1 | 480 | 1 | 480 | 0.0 | 855 |
| Msa0650700 | MtrunA17_Chr4g0061311 | 73.362 | 473 | 124 | 2 | 3 | 473 | 4 | 476 | 0.0 | 728 |
| Msa0650700 | MtrunA17_Chr6g0454531 | 64.557 | 79 | 28 | 0 | 12 | 90 | 16 | 94 | 1.65e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650700 | AT3G29360.1 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0650700 | AT3G29360.2 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0650700 | AT5G39320.1 | 82.845 | 478 | 82 | 0 | 1 | 478 | 1 | 478 | 0.0 | 851 |
| Msa0650700 | AT5G15490.1 | 82.708 | 480 | 83 | 0 | 1 | 480 | 1 | 480 | 0.0 | 847 |
| Msa0650700 | AT1G26570.1 | 80.457 | 481 | 93 | 1 | 1 | 480 | 1 | 481 | 0.0 | 816 |
| Msa0650700 | AT3G01010.1 | 72.393 | 163 | 40 | 2 | 318 | 480 | 1 | 158 | 6.43e-83 | 253 |
Find 126 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGATATTTATGCTAAT+TGG | 0.091386 | 4_3:-57933847 | Msa0650700:CDS |
| GTTGGTAAGCTCAGGAAAAT+TGG | 0.259126 | 4_3:-57933065 | Msa0650700:CDS |
| CATGCCTGCAGTGGCATAAA+AGG | 0.268669 | 4_3:-57932994 | Msa0650700:exon |
| GTACCCTCAGCAAGAAATTC+AGG | 0.280180 | 4_3:+57934035 | None:intergenic |
| TCTAAGAAGATTGCTGTTCT+TGG | 0.281241 | 4_3:-57933449 | Msa0650700:CDS |
| TTACTGGAAGCAAGTGATTA+AGG | 0.289704 | 4_3:-57933537 | Msa0650700:CDS |
| CTGTTCCAACCGTTGATTCT+CGG | 0.323687 | 4_3:+57934392 | None:intergenic |
| AGAGGATTCTAACTCATAAT+AGG | 0.330312 | 4_3:-57934088 | Msa0650700:CDS |
| TTGAATGCTAGTGTTGGTTT+TGG | 0.346083 | 4_3:-57933635 | Msa0650700:CDS |
| GAAAGATATTTATGCTAATT+GGG | 0.354607 | 4_3:-57933846 | Msa0650700:CDS |
| TGTTAAATCAGCCGCTTTGC+CGG | 0.358742 | 4_3:+57934211 | None:intergenic |
| ATTGCTTCAGCTGTTCTAAC+AGG | 0.364317 | 4_3:+57934113 | None:intergenic |
| AAGCGGCTGATTTAACATAC+TGG | 0.368249 | 4_3:-57934205 | Msa0650700:CDS |
| TTCATGTGGTAGCAAATTAC+TGG | 0.378490 | 4_3:-57933553 | Msa0650700:CDS |
| TGCTTTATCGAAGTTGGACT+TGG | 0.380856 | 4_3:+57933245 | None:intergenic |
| CAAGGGTTTGTTGGGAGATA+AGG | 0.381297 | 4_3:-57933369 | Msa0650700:CDS |
| GCCACTTGCTTTATCGAAGT+TGG | 0.388159 | 4_3:+57933239 | None:intergenic |
| AAAGCAAGTGGCTGTGGTTT+GGG | 0.389789 | 4_3:-57933228 | Msa0650700:CDS |
| GTCTGCTGAGCTCTCTAAAC+TGG | 0.391926 | 4_3:-57933789 | Msa0650700:CDS |
| ACCACGGTTACTGCAATCTT+AGG | 0.392452 | 4_3:+57934428 | None:intergenic |
| GGATTTATTGTTTATTCCAT+TGG | 0.392509 | 4_3:-57933044 | Msa0650700:CDS |
| ATTTGATGGTAGGAATGTTA+TGG | 0.395140 | 4_3:-57933090 | Msa0650700:CDS |
| TAAAGCAAGTGGCTGTGGTT+TGG | 0.402728 | 4_3:-57933229 | Msa0650700:CDS |
| CGATGTGTGCAAGGGTTTGT+TGG | 0.421184 | 4_3:-57933378 | Msa0650700:CDS |
| AGAGATTCTCTGTGCCAAAA+AGG | 0.424500 | 4_3:+57933757 | None:intergenic |
| TGTGGTTTGGGATGCTTATG+AGG | 0.427030 | 4_3:-57933216 | Msa0650700:CDS |
| CCACTTCGGTGCTGAAGAAA+AGG | 0.431078 | 4_3:+57934306 | None:intergenic |
| ATCCTTTATGATCTGATCTT+CGG | 0.439079 | 4_3:+57933316 | None:intergenic |
| ATGGTGAAAATTTGTTGCAT+TGG | 0.440890 | 4_3:-57934500 | Msa0650700:CDS |
| AGCCCGGATCGTGTCCTAAT+CGG | 0.446831 | 4_3:-57933911 | Msa0650700:CDS |
| CAACAACTCGGTTCACAAAC+CGG | 0.448174 | 4_3:+57933495 | None:intergenic |
| GTCTATATTTGCGAGTGTAA+TGG | 0.448773 | 4_3:-57933578 | Msa0650700:CDS |
| GTGTCTCCCTACCTCCGATT+AGG | 0.449487 | 4_3:+57933897 | None:intergenic |
| ATTACCTTGTATAGAGAAGA+TGG | 0.450940 | 4_3:+57935357 | None:intergenic |
| TGCAATCTTAGGACACTTCA+AGG | 0.467490 | 4_3:+57934439 | None:intergenic |
| GATCGCCGATGTTTCTAAAT+CGG | 0.469822 | 4_3:-57934165 | Msa0650700:CDS |
| TGGTGGCTCTTGCTTTCAGA+AGG | 0.474973 | 4_3:-57933615 | Msa0650700:CDS |
| AAAATTTGTTGCATTGGAGC+TGG | 0.481850 | 4_3:-57934494 | Msa0650700:CDS |
| TTCTCCATCTTCTCTATACA+AGG | 0.482323 | 4_3:-57935361 | Msa0650700:intron |
| GGACACGATCCGGGCTGAAA+AGG | 0.485556 | 4_3:+57933918 | None:intergenic |
| ATCGGAACAGACTCGAGGAT+TGG | 0.486245 | 4_3:-57933668 | Msa0650700:CDS |
| TTATTCCATTGGTAAGCCAC+TGG | 0.486901 | 4_3:-57933033 | Msa0650700:CDS |
| AAGCCGTGGTGAAGGAGTGC+AGG | 0.486980 | 4_3:-57934337 | Msa0650700:CDS |
| TTCGATAAAGCAAGTGGCTG+TGG | 0.488251 | 4_3:-57933234 | Msa0650700:CDS |
| TTCACCACGGCTTCAAGACC+TGG | 0.489528 | 4_3:+57934347 | None:intergenic |
| TACCGAAGATCAGATCATAA+AGG | 0.492354 | 4_3:-57933318 | Msa0650700:CDS |
| GTCGATGAAGAAATTCGATA+AGG | 0.498139 | 4_3:-57933291 | Msa0650700:CDS |
| GATGTGTGCAAGGGTTTGTT+GGG | 0.501277 | 4_3:-57933377 | Msa0650700:CDS |
| TGCAACATGTTTCTCCACTT+CGG | 0.501336 | 4_3:+57934292 | None:intergenic |
| CCCTTGCACACATCGATAGC+CGG | 0.502325 | 4_3:+57933386 | None:intergenic |
| TACCCTCAGCAAGAAATTCA+GGG | 0.503132 | 4_3:+57934036 | None:intergenic |
| AGCAACTGGTGCTGATATCT+CGG | 0.508415 | 4_3:-57933705 | Msa0650700:CDS |
| TGCATTGGAGCTGGATATGT+TGG | 0.508667 | 4_3:-57934485 | Msa0650700:CDS |
| AAAACTCATGGTCTTGGAGC+CGG | 0.509641 | 4_3:-57934230 | Msa0650700:CDS |
| TCTTGGTTTCTCTTTCAAGA+AGG | 0.511984 | 4_3:-57933432 | Msa0650700:CDS |
| TTTATCGAAGTTGGACTTGG+TGG | 0.513987 | 4_3:+57933248 | None:intergenic |
| TCAGAAGGATATAATGAACT+TGG | 0.517285 | 4_3:-57933600 | Msa0650700:CDS |
| GGTAGGAATGTTATGGATGT+TGG | 0.519091 | 4_3:-57933083 | Msa0650700:CDS |
| TCAAGACCTGGCTCGTAGAT+CGG | 0.519115 | 4_3:+57934359 | None:intergenic |
| TTATGGATGTTGGTAAGCTC+AGG | 0.521362 | 4_3:-57933073 | Msa0650700:CDS |
| GGAGACACCAGAAGGACAAA+AGG | 0.523750 | 4_3:-57933882 | Msa0650700:CDS |
| TTGGTAAGCCACTGGATCCA+TGG | 0.524811 | 4_3:-57933025 | Msa0650700:CDS |
| TTATGCTAATTGGGTCCCTA+AGG | 0.524851 | 4_3:-57933837 | Msa0650700:CDS |
| AGAAGGACACAGGCGATACA+AGG | 0.525027 | 4_3:-57933415 | Msa0650700:CDS |
| CTTGGTGGTTGAAGATGAGC+AGG | 0.525970 | 4_3:+57933263 | None:intergenic |
| ACCGGCTATCGATGTGTGCA+AGG | 0.530309 | 4_3:-57933387 | Msa0650700:CDS |
| ATTTCAGCGCCGAGAATCAA+CGG | 0.534356 | 4_3:-57934401 | Msa0650700:CDS |
| CAAGGCAATCACAGCCATTG+TGG | 0.541163 | 4_3:+57934457 | None:intergenic |
| TTCTAAATCGGACAAAATTG+TGG | 0.542076 | 4_3:-57934153 | Msa0650700:CDS |
| AACCCTGAATTTCTTGCTGA+GGG | 0.543013 | 4_3:-57934038 | Msa0650700:intron |
| AGGTCTTGAAGCCGTGGTGA+AGG | 0.543599 | 4_3:-57934345 | Msa0650700:CDS |
| TTAATGACTATCAGAAAAGC+CGG | 0.546119 | 4_3:-57933514 | Msa0650700:CDS |
| TCGGAGGTATCACACTCAAT+CGG | 0.548115 | 4_3:-57933686 | Msa0650700:CDS |
| GAGCTCAGCAGACCACAGAT+TGG | 0.552085 | 4_3:+57933799 | None:intergenic |
| AAGGCAATCACAGCCATTGT+GGG | 0.553236 | 4_3:+57934458 | None:intergenic |
| TTCTCTTTCAAGAAGGACAC+AGG | 0.554715 | 4_3:-57933425 | Msa0650700:CDS |
| TCCTTGAGCCATGGATCCAG+TGG | 0.560633 | 4_3:+57933017 | None:intergenic |
| TGGATCCAGTGGCTTACCAA+TGG | 0.562663 | 4_3:+57933028 | None:intergenic |
| CCTCCGATTAGGACACGATC+CGG | 0.564937 | 4_3:+57933908 | None:intergenic |
| ATTGGAGCTGGATATGTTGG+TGG | 0.565995 | 4_3:-57934482 | Msa0650700:CDS |
| TCGTGTCCTAATCGGAGGTA+GGG | 0.567068 | 4_3:-57933903 | Msa0650700:CDS |
| GCAGGCATGTCCTTGAGCCA+TGG | 0.569217 | 4_3:+57933008 | None:intergenic |
| CAGCGCCGAGAATCAACGGT+TGG | 0.569257 | 4_3:-57934397 | Msa0650700:CDS |
| AGGCGATACAAGGGAAGCAC+CGG | 0.573278 | 4_3:-57933405 | Msa0650700:CDS |
| TGGTGAAGGAGTGCAGGGGA+AGG | 0.576100 | 4_3:-57934331 | Msa0650700:CDS |
| AGCGGCTGATTTAACATACT+GGG | 0.577833 | 4_3:-57934204 | Msa0650700:CDS |
| CACCTACCGATCTACGAGCC+AGG | 0.578252 | 4_3:-57934365 | Msa0650700:CDS |
| AAACCCTGAATTTCTTGCTG+AGG | 0.578960 | 4_3:-57934039 | Msa0650700:CDS |
| ATCTGATCTTCGGTAACTTG+AGG | 0.579881 | 4_3:+57933326 | None:intergenic |
| TCAGCACTATGTGAAGCAAC+TGG | 0.581495 | 4_3:-57933719 | Msa0650700:CDS |
| ACACTAGCATTCAAGAACTT+AGG | 0.584911 | 4_3:+57933644 | None:intergenic |
| AAGTTCTTGAATGCTAGTGT+TGG | 0.587122 | 4_3:-57933641 | Msa0650700:CDS |
| GTTTGTTGGGAGATAAGGCA+AGG | 0.587768 | 4_3:-57933364 | Msa0650700:CDS |
| CGAGCCAGGTCTTGAAGCCG+TGG | 0.588293 | 4_3:-57934351 | Msa0650700:CDS |
| AGAAGCAACCGTGTTGAACA+TGG | 0.590789 | 4_3:+57933469 | None:intergenic |
| GCCACTGGATCCATGGCTCA+AGG | 0.597097 | 4_3:-57933018 | Msa0650700:CDS |
| TCCAACTTCGATAAAGCAAG+TGG | 0.600253 | 4_3:-57933240 | Msa0650700:CDS |
| TTTGTCCGATTTAGAAACAT+CGG | 0.602624 | 4_3:+57934160 | None:intergenic |
| AGCCGTGGTGAAGGAGTGCA+GGG | 0.608786 | 4_3:-57934336 | Msa0650700:CDS |
| AAATCATTTGCACCAATCTG+TGG | 0.612903 | 4_3:-57933811 | Msa0650700:CDS |
| ATCGTGTCCTAATCGGAGGT+AGG | 0.615001 | 4_3:-57933904 | Msa0650700:CDS |
| GCTCAAGGACATGCCTGCAG+TGG | 0.625363 | 4_3:-57933003 | Msa0650700:CDS |
| TCCCCTGCACTCCTTCACCA+CGG | 0.628514 | 4_3:+57934334 | None:intergenic |
| TGAACATGGACGCAACAACT+CGG | 0.630690 | 4_3:+57933483 | None:intergenic |
| CCGGCTATCGATGTGTGCAA+GGG | 0.631110 | 4_3:-57933386 | Msa0650700:CDS |
| CTCCGATTAGGACACGATCC+GGG | 0.633554 | 4_3:+57933909 | None:intergenic |
| GACCTGGCTCGTAGATCGGT+AGG | 0.635406 | 4_3:+57934363 | None:intergenic |
| TGTTGCGTCCATGTTCAACA+CGG | 0.638044 | 4_3:-57933477 | Msa0650700:CDS |
| GAAGGACACAGGCGATACAA+GGG | 0.639231 | 4_3:-57933414 | Msa0650700:CDS |
| GAACAGCTGAAGCAATTGAG+AGG | 0.641777 | 4_3:-57934106 | Msa0650700:CDS |
| GGAGGTAGGGAGACACCAGA+AGG | 0.655737 | 4_3:-57933890 | Msa0650700:CDS |
| CCGGATCGTGTCCTAATCGG+AGG | 0.664959 | 4_3:-57933908 | Msa0650700:CDS |
| TCCTAAGATTGCAGTAACCG+TGG | 0.667449 | 4_3:-57934429 | Msa0650700:CDS |
| CGAGTGTAATGGTCTTCATG+TGG | 0.667527 | 4_3:-57933567 | Msa0650700:CDS |
| ATATGTTGGTGGTCCCACAA+TGG | 0.680415 | 4_3:-57934471 | Msa0650700:CDS |
| CATACTGGGAGAGTTCTGCT+CGG | 0.681592 | 4_3:-57934190 | Msa0650700:CDS |
| CTGGCTCGTAGATCGGTAGG+TGG | 0.689180 | 4_3:+57934366 | None:intergenic |
| TGGTCTTGGAGCCGGCAAAG+CGG | 0.691470 | 4_3:-57934222 | Msa0650700:CDS |
| ACTCAATCGGAACAGACTCG+AGG | 0.702881 | 4_3:-57933673 | Msa0650700:CDS |
| AACTGGTGCTGATATCTCGG+AGG | 0.704506 | 4_3:-57933702 | Msa0650700:CDS |
| GTGTTTGCATTATGACTGAG+TGG | 0.706540 | 4_3:-57933175 | Msa0650700:CDS |
| TGTTTGCATTATGACTGAGT+GGG | 0.707780 | 4_3:-57933174 | Msa0650700:CDS |
| CGGCGCTGAAATATCGACCA+CGG | 0.712301 | 4_3:+57934412 | None:intergenic |
| GCCGTGGTGAAGGAGTGCAG+GGG | 0.744462 | 4_3:-57934335 | Msa0650700:CDS |
| GGTTTGGGATGCTTATGAGG+CGG | 0.748746 | 4_3:-57933213 | Msa0650700:CDS |
| GAGGCGGTGAAAGATGCACA+CGG | 0.755151 | 4_3:-57933197 | Msa0650700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATGTTTAATTATAAT+AGG | + | chr4_3:57935189-57935208 | None:intergenic | 10.0% |
| !! | AATAATACTATTAAGAATTG+TGG | + | chr4_3:57932930-57932949 | None:intergenic | 15.0% |
| !! | TAAAAGAATATTAAATCCAT+AGG | + | chr4_3:57933056-57933075 | None:intergenic | 15.0% |
| !!! | TAGAATGATTTTTTAATAAC+AGG | + | chr4_3:57933106-57933125 | None:intergenic | 15.0% |
| !!! | GTTCATAAATTATTCAATTT+TGG | - | chr4_3:57933376-57933395 | Msa0650700:CDS | 15.0% |
| !!! | GTTCATAAATTATTCAATTT+TGG | - | chr4_3:57933376-57933395 | Msa0650700:CDS | 15.0% |
| !!! | TTTTATCAATATTCAATGAA+AGG | + | chr4_3:57935373-57935392 | None:intergenic | 15.0% |
| !! | TGGCATATACTAATAAAATA+AGG | + | chr4_3:57932910-57932929 | None:intergenic | 20.0% |
| !! | TACATTCAAATGCTTATTAT+TGG | + | chr4_3:57933483-57933502 | None:intergenic | 20.0% |
| !!! | TACTTTGAAATGCTTATTAT+TGG | + | chr4_3:57933531-57933550 | None:intergenic | 20.0% |
| !! | ATATACATTATTGTTATGCA+TGG | - | chr4_3:57933551-57933570 | Msa0650700:CDS | 20.0% |
| !! | AAGTTAAGAAAAAGCAAAAA+TGG | - | chr4_3:57933612-57933631 | Msa0650700:CDS | 20.0% |
| !!! | AATTTTATCTGTAATAGGTA+CGG | - | chr4_3:57934180-57934199 | Msa0650700:CDS | 20.0% |
| !! | TGAAAGATATTTATGCTAAT+TGG | - | chr4_3:57934284-57934303 | Msa0650700:CDS | 20.0% |
| !! | GAAAGATATTTATGCTAATT+GGG | - | chr4_3:57934285-57934304 | Msa0650700:CDS | 20.0% |
| !!! | GCATATTGTCATAAATTTTT+TGG | + | chr4_3:57935005-57935024 | None:intergenic | 20.0% |
| ! | GAATATTCAATTGTACATGA+AGG | + | chr4_3:57933018-57933037 | None:intergenic | 25.0% |
| ! | ACAGACACAACATATTTATA+AGG | + | chr4_3:57933303-57933322 | None:intergenic | 25.0% |
| ! | AATTCCTGAAATAGTTAGTT+AGG | - | chr4_3:57934119-57934138 | Msa0650700:CDS | 25.0% |
| ! | ATAACCTAACTAACTATTTC+AGG | + | chr4_3:57934126-57934145 | None:intergenic | 25.0% |
| !! | GTACCAATTTTATCTGTAAT+AGG | - | chr4_3:57934175-57934194 | Msa0650700:CDS | 25.0% |
| ! | GTACCTATTACAGATAAAAT+TGG | + | chr4_3:57934181-57934200 | None:intergenic | 25.0% |
| ! | GGATTTATTGTTTATTCCAT+TGG | - | chr4_3:57935087-57935106 | Msa0650700:intron | 25.0% |
| ATTACCTTGTATAGAGAAGA+TGG | + | chr4_3:57932777-57932796 | None:intergenic | 30.0% | |
| AAAATAAGGTAGCAAGATCT+AGG | + | chr4_3:57932896-57932915 | None:intergenic | 30.0% | |
| AGTACATATGATTTCTGACA+CGG | - | chr4_3:57933181-57933200 | Msa0650700:CDS | 30.0% | |
| TGTTCACACTCAATGTTATA+TGG | + | chr4_3:57933217-57933236 | None:intergenic | 30.0% | |
| ATAACATTGAGTGTGAACAA+TGG | - | chr4_3:57933218-57933237 | Msa0650700:CDS | 30.0% | |
| AAGCAAAATGTTTCTTGACA+CGG | + | chr4_3:57933334-57933353 | None:intergenic | 30.0% | |
| AAGCAAAATGTTTCTTGACA+CGG | + | chr4_3:57933334-57933353 | None:intergenic | 30.0% | |
| !! | ATGGTGAAAATTTGTTGCAT+TGG | - | chr4_3:57933631-57933650 | Msa0650700:CDS | 30.0% |
| TTTGTCCGATTTAGAAACAT+CGG | + | chr4_3:57933974-57933993 | None:intergenic | 30.0% | |
| TTCTAAATCGGACAAAATTG+TGG | - | chr4_3:57933978-57933997 | Msa0650700:intron | 30.0% | |
| AGAGGATTCTAACTCATAAT+AGG | - | chr4_3:57934043-57934062 | Msa0650700:CDS | 30.0% | |
| ! | TGCAAATGATTTTCTCCTTA+GGG | + | chr4_3:57934312-57934331 | None:intergenic | 30.0% |
| TCAGAAGGATATAATGAACT+TGG | - | chr4_3:57934531-57934550 | Msa0650700:intron | 30.0% | |
| TTAATGACTATCAGAAAAGC+CGG | - | chr4_3:57934617-57934636 | Msa0650700:intron | 30.0% | |
| ATCCTTTATGATCTGATCTT+CGG | + | chr4_3:57934818-57934837 | None:intergenic | 30.0% | |
| !! | AAGCCAGCATTTTTATTTGA+TGG | - | chr4_3:57935027-57935046 | Msa0650700:intron | 30.0% |
| CTACCATCAAATAAAAATGC+TGG | + | chr4_3:57935033-57935052 | None:intergenic | 30.0% | |
| !! | CAGCATTTTTATTTGATGGT+AGG | - | chr4_3:57935031-57935050 | Msa0650700:intron | 30.0% |
| ! | ATTTGATGGTAGGAATGTTA+TGG | - | chr4_3:57935041-57935060 | Msa0650700:intron | 30.0% |
| TTCTCCATCTTCTCTATACA+AGG | - | chr4_3:57932770-57932789 | Msa0650700:three_prime_UTR | 35.0% | |
| ! | CTGTCACAAGATCTTTTCTT+AGG | - | chr4_3:57932838-57932857 | Msa0650700:three_prime_UTR | 35.0% |
| CTATGTTTGAGAATGTCCTA+TGG | - | chr4_3:57933037-57933056 | Msa0650700:CDS | 35.0% | |
| !! | AAAATTTGTTGCATTGGAGC+TGG | - | chr4_3:57933637-57933656 | Msa0650700:CDS | 35.0% |
| AACACACCAACAAAAACTCA+TGG | - | chr4_3:57933889-57933908 | Msa0650700:CDS | 35.0% | |
| ! | GTGCAAATGATTTTCTCCTT+AGG | + | chr4_3:57934313-57934332 | None:intergenic | 35.0% |
| AAATCATTTGCACCAATCTG+TGG | - | chr4_3:57934320-57934339 | Msa0650700:CDS | 35.0% | |
| ACACTAGCATTCAAGAACTT+AGG | + | chr4_3:57934490-57934509 | None:intergenic | 35.0% | |
| AAGTTCTTGAATGCTAGTGT+TGG | - | chr4_3:57934490-57934509 | Msa0650700:CDS | 35.0% | |
| !!! | TTGAATGCTAGTGTTGGTTT+TGG | - | chr4_3:57934496-57934515 | Msa0650700:CDS | 35.0% |
| GTCTATATTTGCGAGTGTAA+TGG | - | chr4_3:57934553-57934572 | Msa0650700:intron | 35.0% | |
| TTCATGTGGTAGCAAATTAC+TGG | - | chr4_3:57934578-57934597 | Msa0650700:intron | 35.0% | |
| TTACTGGAAGCAAGTGATTA+AGG | - | chr4_3:57934594-57934613 | Msa0650700:intron | 35.0% | |
| ! | TCTAAGAAGATTGCTGTTCT+TGG | - | chr4_3:57934682-57934701 | Msa0650700:intron | 35.0% |
| TCTTGGTTTCTCTTTCAAGA+AGG | - | chr4_3:57934699-57934718 | Msa0650700:intron | 35.0% | |
| TACCGAAGATCAGATCATAA+AGG | - | chr4_3:57934813-57934832 | Msa0650700:intron | 35.0% | |
| GTCGATGAAGAAATTCGATA+AGG | - | chr4_3:57934840-57934859 | Msa0650700:intron | 35.0% | |
| TGTTTGCATTATGACTGAGT+GGG | - | chr4_3:57934957-57934976 | Msa0650700:intron | 35.0% | |
| ATCTTGTGACAGAGACACAA+AGG | + | chr4_3:57932830-57932849 | None:intergenic | 40.0% | |
| ATCTTCATGTCACACAGTGA+AGG | - | chr4_3:57933589-57933608 | Msa0650700:CDS | 40.0% | |
| TGCAATCTTAGGACACTTCA+AGG | + | chr4_3:57933695-57933714 | None:intergenic | 40.0% | |
| TGCAACATGTTTCTCCACTT+CGG | + | chr4_3:57933842-57933861 | None:intergenic | 40.0% | |
| ! | CCAAGACCATGAGTTTTTGT+TGG | + | chr4_3:57933898-57933917 | None:intergenic | 40.0% |
| CCAACAAAAACTCATGGTCT+TGG | - | chr4_3:57933895-57933914 | Msa0650700:CDS | 40.0% | |
| ! | AAGCGGCTGATTTAACATAC+TGG | - | chr4_3:57933926-57933945 | Msa0650700:CDS | 40.0% |
| ! | AGCGGCTGATTTAACATACT+GGG | - | chr4_3:57933927-57933946 | Msa0650700:CDS | 40.0% |
| ! | GATCGCCGATGTTTCTAAAT+CGG | - | chr4_3:57933966-57933985 | Msa0650700:intron | 40.0% |
| ATTGCTTCAGCTGTTCTAAC+AGG | + | chr4_3:57934021-57934040 | None:intergenic | 40.0% | |
| AAACCCTGAATTTCTTGCTG+AGG | - | chr4_3:57934092-57934111 | Msa0650700:CDS | 40.0% | |
| AACCCTGAATTTCTTGCTGA+GGG | - | chr4_3:57934093-57934112 | Msa0650700:CDS | 40.0% | |
| TACCCTCAGCAAGAAATTCA+GGG | + | chr4_3:57934098-57934117 | None:intergenic | 40.0% | |
| ! | AATCAAAGACCTTTTCAGCC+CGG | - | chr4_3:57934204-57934223 | Msa0650700:CDS | 40.0% |
| ! | TCTATAGCCTTTTGTCCTTC+TGG | + | chr4_3:57934259-57934278 | None:intergenic | 40.0% |
| TTATGCTAATTGGGTCCCTA+AGG | - | chr4_3:57934294-57934313 | Msa0650700:CDS | 40.0% | |
| AGAGATTCTCTGTGCCAAAA+AGG | + | chr4_3:57934377-57934396 | None:intergenic | 40.0% | |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | - | chr4_3:57934499-57934518 | Msa0650700:CDS | 40.0% |
| TTCTCTTTCAAGAAGGACAC+AGG | - | chr4_3:57934706-57934725 | Msa0650700:intron | 40.0% | |
| ATCTGATCTTCGGTAACTTG+AGG | + | chr4_3:57934808-57934827 | None:intergenic | 40.0% | |
| TTTATCGAAGTTGGACTTGG+TGG | + | chr4_3:57934886-57934905 | None:intergenic | 40.0% | |
| TGCTTTATCGAAGTTGGACT+TGG | + | chr4_3:57934889-57934908 | None:intergenic | 40.0% | |
| TCCAACTTCGATAAAGCAAG+TGG | - | chr4_3:57934891-57934910 | Msa0650700:intron | 40.0% | |
| GTGTTTGCATTATGACTGAG+TGG | - | chr4_3:57934956-57934975 | Msa0650700:intron | 40.0% | |
| GGTAGGAATGTTATGGATGT+TGG | - | chr4_3:57935048-57935067 | Msa0650700:intron | 40.0% | |
| ! | TTATGGATGTTGGTAAGCTC+AGG | - | chr4_3:57935058-57935077 | Msa0650700:intron | 40.0% |
| ! | GTTGGTAAGCTCAGGAAAAT+TGG | - | chr4_3:57935066-57935085 | Msa0650700:intron | 40.0% |
| TTATTCCATTGGTAAGCCAC+TGG | - | chr4_3:57935098-57935117 | Msa0650700:intron | 40.0% | |
| TGCATTGGAGCTGGATATGT+TGG | - | chr4_3:57933646-57933665 | Msa0650700:CDS | 45.0% | |
| ATTGGAGCTGGATATGTTGG+TGG | - | chr4_3:57933649-57933668 | Msa0650700:CDS | 45.0% | |
| !! | ATATGTTGGTGGTCCCACAA+TGG | - | chr4_3:57933660-57933679 | Msa0650700:CDS | 45.0% |
| AAGGCAATCACAGCCATTGT+GGG | + | chr4_3:57933676-57933695 | None:intergenic | 45.0% | |
| TCCTAAGATTGCAGTAACCG+TGG | - | chr4_3:57933702-57933721 | Msa0650700:CDS | 45.0% | |
| ACCACGGTTACTGCAATCTT+AGG | + | chr4_3:57933706-57933725 | None:intergenic | 45.0% | |
| ! | ATTTCAGCGCCGAGAATCAA+CGG | - | chr4_3:57933730-57933749 | Msa0650700:CDS | 45.0% |
| !! | CTGTTCCAACCGTTGATTCT+CGG | + | chr4_3:57933742-57933761 | None:intergenic | 45.0% |
| ! | AAAACTCATGGTCTTGGAGC+CGG | - | chr4_3:57933901-57933920 | Msa0650700:CDS | 45.0% |
| ! | TGTTAAATCAGCCGCTTTGC+CGG | + | chr4_3:57933923-57933942 | None:intergenic | 45.0% |
| GAACAGCTGAAGCAATTGAG+AGG | - | chr4_3:57934025-57934044 | Msa0650700:intron | 45.0% | |
| GTACCCTCAGCAAGAAATTC+AGG | + | chr4_3:57934099-57934118 | None:intergenic | 45.0% | |
| TCAGCACTATGTGAAGCAAC+TGG | - | chr4_3:57934412-57934431 | Msa0650700:CDS | 45.0% | |
| !! | AGCAACTGGTGCTGATATCT+CGG | - | chr4_3:57934426-57934445 | Msa0650700:CDS | 45.0% |
| !! | TCGGAGGTATCACACTCAAT+CGG | - | chr4_3:57934445-57934464 | Msa0650700:CDS | 45.0% |
| CGAGTGTAATGGTCTTCATG+TGG | - | chr4_3:57934564-57934583 | Msa0650700:intron | 45.0% | |
| CAACAACTCGGTTCACAAAC+CGG | + | chr4_3:57934639-57934658 | None:intergenic | 45.0% | |
| TGAACATGGACGCAACAACT+CGG | + | chr4_3:57934651-57934670 | None:intergenic | 45.0% | |
| TGTTGCGTCCATGTTCAACA+CGG | - | chr4_3:57934654-57934673 | Msa0650700:intron | 45.0% | |
| AGAAGCAACCGTGTTGAACA+TGG | + | chr4_3:57934665-57934684 | None:intergenic | 45.0% | |
| ! | GATGTGTGCAAGGGTTTGTT+GGG | - | chr4_3:57934754-57934773 | Msa0650700:intron | 45.0% |
| !! | CAAGGGTTTGTTGGGAGATA+AGG | - | chr4_3:57934762-57934781 | Msa0650700:intron | 45.0% |
| ! | GTTTGTTGGGAGATAAGGCA+AGG | - | chr4_3:57934767-57934786 | Msa0650700:intron | 45.0% |
| GCCACTTGCTTTATCGAAGT+TGG | + | chr4_3:57934895-57934914 | None:intergenic | 45.0% | |
| TTCGATAAAGCAAGTGGCTG+TGG | - | chr4_3:57934897-57934916 | Msa0650700:intron | 45.0% | |
| TAAAGCAAGTGGCTGTGGTT+TGG | - | chr4_3:57934902-57934921 | Msa0650700:intron | 45.0% | |
| AAAGCAAGTGGCTGTGGTTT+GGG | - | chr4_3:57934903-57934922 | Msa0650700:intron | 45.0% | |
| ! | TGTGGTTTGGGATGCTTATG+AGG | - | chr4_3:57934915-57934934 | Msa0650700:intron | 45.0% |
| ! | GATTCCTTTTATGCCACTGC+AGG | + | chr4_3:57935144-57935163 | None:intergenic | 45.0% |
| !! | AAAAATGTTTAATTATAATA+GGG | + | chr4_3:57935188-57935207 | None:intergenic | 5.0% |
| GATGCTTGTTCTCTCTCCTC+GGG | + | chr4_3:57933245-57933264 | None:intergenic | 50.0% | |
| CGATGCTTGTTCTCTCTCCT+CGG | + | chr4_3:57933246-57933265 | None:intergenic | 50.0% | |
| CAAGGCAATCACAGCCATTG+TGG | + | chr4_3:57933677-57933696 | None:intergenic | 50.0% | |
| ! | TCAAGACCTGGCTCGTAGAT+CGG | + | chr4_3:57933775-57933794 | None:intergenic | 50.0% |
| !! | CCACTTCGGTGCTGAAGAAA+AGG | + | chr4_3:57933828-57933847 | None:intergenic | 50.0% |
| !! | CCTTTTCTTCAGCACCGAAG+TGG | - | chr4_3:57933825-57933844 | Msa0650700:CDS | 50.0% |
| CATACTGGGAGAGTTCTGCT+CGG | - | chr4_3:57933941-57933960 | Msa0650700:intron | 50.0% | |
| ATCGTGTCCTAATCGGAGGT+AGG | - | chr4_3:57934227-57934246 | Msa0650700:CDS | 50.0% | |
| TCGTGTCCTAATCGGAGGTA+GGG | - | chr4_3:57934228-57934247 | Msa0650700:CDS | 50.0% | |
| GGAGACACCAGAAGGACAAA+AGG | - | chr4_3:57934249-57934268 | Msa0650700:CDS | 50.0% | |
| GTCTGCTGAGCTCTCTAAAC+TGG | - | chr4_3:57934342-57934361 | Msa0650700:CDS | 50.0% | |
| ! | ACTGGCTGCTAACGCCTTTT+TGG | - | chr4_3:57934360-57934379 | Msa0650700:CDS | 50.0% |
| !! | AACTGGTGCTGATATCTCGG+AGG | - | chr4_3:57934429-57934448 | Msa0650700:CDS | 50.0% |
| ACTCAATCGGAACAGACTCG+AGG | - | chr4_3:57934458-57934477 | Msa0650700:CDS | 50.0% | |
| ATCGGAACAGACTCGAGGAT+TGG | - | chr4_3:57934463-57934482 | Msa0650700:CDS | 50.0% | |
| TGGTGGCTCTTGCTTTCAGA+AGG | - | chr4_3:57934516-57934535 | Msa0650700:exon | 50.0% | |
| AGAAGGACACAGGCGATACA+AGG | - | chr4_3:57934716-57934735 | Msa0650700:intron | 50.0% | |
| GAAGGACACAGGCGATACAA+GGG | - | chr4_3:57934717-57934736 | Msa0650700:intron | 50.0% | |
| CGATGTGTGCAAGGGTTTGT+TGG | - | chr4_3:57934753-57934772 | Msa0650700:intron | 50.0% | |
| ! | CTTGGTGGTTGAAGATGAGC+AGG | + | chr4_3:57934871-57934890 | None:intergenic | 50.0% |
| ! | GGTTTGGGATGCTTATGAGG+CGG | - | chr4_3:57934918-57934937 | Msa0650700:intron | 50.0% |
| TGGATCCAGTGGCTTACCAA+TGG | + | chr4_3:57935106-57935125 | None:intergenic | 50.0% | |
| TTGGTAAGCCACTGGATCCA+TGG | - | chr4_3:57935106-57935125 | Msa0650700:intron | 50.0% | |
| CATGCCTGCAGTGGCATAAA+AGG | - | chr4_3:57935137-57935156 | Msa0650700:intron | 50.0% | |
| GAGTGTGAACAATGGTCCCG+AGG | - | chr4_3:57933226-57933245 | Msa0650700:CDS | 55.0% | |
| ! | CGGCGCTGAAATATCGACCA+CGG | + | chr4_3:57933722-57933741 | None:intergenic | 55.0% |
| TTCACCACGGCTTCAAGACC+TGG | + | chr4_3:57933787-57933806 | None:intergenic | 55.0% | |
| AGGTCTTGAAGCCGTGGTGA+AGG | - | chr4_3:57933786-57933805 | Msa0650700:CDS | 55.0% | |
| AGCCCGGATCGTGTCCTAAT+CGG | - | chr4_3:57934220-57934239 | Msa0650700:CDS | 55.0% | |
| CTCCGATTAGGACACGATCC+GGG | + | chr4_3:57934225-57934244 | None:intergenic | 55.0% | |
| CCTCCGATTAGGACACGATC+CGG | + | chr4_3:57934226-57934245 | None:intergenic | 55.0% | |
| GTGTCTCCCTACCTCCGATT+AGG | + | chr4_3:57934237-57934256 | None:intergenic | 55.0% | |
| GAGCTCAGCAGACCACAGAT+TGG | + | chr4_3:57934335-57934354 | None:intergenic | 55.0% | |
| ! | AGGCGATACAAGGGAAGCAC+CGG | - | chr4_3:57934726-57934745 | Msa0650700:intron | 55.0% |
| ACCGGCTATCGATGTGTGCA+AGG | - | chr4_3:57934744-57934763 | Msa0650700:intron | 55.0% | |
| CCCTTGCACACATCGATAGC+CGG | + | chr4_3:57934748-57934767 | None:intergenic | 55.0% | |
| CCGGCTATCGATGTGTGCAA+GGG | - | chr4_3:57934745-57934764 | Msa0650700:intron | 55.0% | |
| GAGGCGGTGAAAGATGCACA+CGG | - | chr4_3:57934934-57934953 | Msa0650700:intron | 55.0% | |
| TCCTTGAGCCATGGATCCAG+TGG | + | chr4_3:57935117-57935136 | None:intergenic | 55.0% | |
| ! | CAGCGCCGAGAATCAACGGT+TGG | - | chr4_3:57933734-57933753 | Msa0650700:CDS | 60.0% |
| ! | CTGGCTCGTAGATCGGTAGG+TGG | + | chr4_3:57933768-57933787 | None:intergenic | 60.0% |
| CACCTACCGATCTACGAGCC+AGG | - | chr4_3:57933766-57933785 | Msa0650700:CDS | 60.0% | |
| ! | GACCTGGCTCGTAGATCGGT+AGG | + | chr4_3:57933771-57933790 | None:intergenic | 60.0% |
| ! | AAGCCGTGGTGAAGGAGTGC+AGG | - | chr4_3:57933794-57933813 | Msa0650700:CDS | 60.0% |
| ! | AGCCGTGGTGAAGGAGTGCA+GGG | - | chr4_3:57933795-57933814 | Msa0650700:CDS | 60.0% |
| TCCCCTGCACTCCTTCACCA+CGG | + | chr4_3:57933800-57933819 | None:intergenic | 60.0% | |
| ! | TGGTGAAGGAGTGCAGGGGA+AGG | - | chr4_3:57933800-57933819 | Msa0650700:CDS | 60.0% |
| ! | TGGTCTTGGAGCCGGCAAAG+CGG | - | chr4_3:57933909-57933928 | Msa0650700:CDS | 60.0% |
| GGACACGATCCGGGCTGAAA+AGG | + | chr4_3:57934216-57934235 | None:intergenic | 60.0% | |
| CCGGATCGTGTCCTAATCGG+AGG | - | chr4_3:57934223-57934242 | Msa0650700:CDS | 60.0% | |
| GGAGGTAGGGAGACACCAGA+AGG | - | chr4_3:57934241-57934260 | Msa0650700:CDS | 60.0% | |
| GCCACTGGATCCATGGCTCA+AGG | - | chr4_3:57935113-57935132 | Msa0650700:intron | 60.0% | |
| GCAGGCATGTCCTTGAGCCA+TGG | + | chr4_3:57935126-57935145 | None:intergenic | 60.0% | |
| GCTCAAGGACATGCCTGCAG+TGG | - | chr4_3:57935128-57935147 | Msa0650700:intron | 60.0% | |
| CGAGCCAGGTCTTGAAGCCG+TGG | - | chr4_3:57933780-57933799 | Msa0650700:CDS | 65.0% | |
| ! | GCCGTGGTGAAGGAGTGCAG+GGG | - | chr4_3:57933796-57933815 | Msa0650700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 57932753 | 57935400 | 57932753 | ID=Msa0650700;Name=Msa0650700 |
| chr4_3 | mRNA | 57932753 | 57935400 | 57932753 | ID=Msa0650700-mRNA-1;Parent=Msa0650700;Name=Msa0650700-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|0.5|0.33|3|245|480 |
| chr4_3 | exon | 57932753 | 57933956 | 57932753 | ID=Msa0650700-mRNA-1:exon:15211;Parent=Msa0650700-mRNA-1 |
| chr4_3 | exon | 57934039 | 57934547 | 57934039 | ID=Msa0650700-mRNA-1:exon:15210;Parent=Msa0650700-mRNA-1 |
| chr4_3 | exon | 57935362 | 57935400 | 57935362 | ID=Msa0650700-mRNA-1:exon:15209;Parent=Msa0650700-mRNA-1 |
| chr4_3 | five_prime_UTR | 57935362 | 57935400 | 57935362 | ID=Msa0650700-mRNA-1:five_prime_utr;Parent=Msa0650700-mRNA-1 |
| chr4_3 | five_prime_UTR | 57934523 | 57934547 | 57934523 | ID=Msa0650700-mRNA-1:five_prime_utr;Parent=Msa0650700-mRNA-1 |
| chr4_3 | CDS | 57934039 | 57934522 | 57934039 | ID=Msa0650700-mRNA-1:cds;Parent=Msa0650700-mRNA-1 |
| chr4_3 | CDS | 57932998 | 57933956 | 57932998 | ID=Msa0650700-mRNA-1:cds;Parent=Msa0650700-mRNA-1 |
| chr4_3 | three_prime_UTR | 57932753 | 57932997 | 57932753 | ID=Msa0650700-mRNA-1:three_prime_utr;Parent=Msa0650700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
