Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650790 | XP_003607793.2 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650790 | sp|Q96558|UGDH1_SOYBN | 85.208 | 480 | 71 | 0 | 1 | 480 | 1 | 480 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0650700 | Msa0650790 | 0.995559 | 1.707464e-217 | -8.615850e-47 |
| Msa0650790 | Msa1329050 | -0.800169 | 1.635173e-48 | -8.615850e-47 |
| Msa0650790 | Msa1390700 | 0.808558 | 2.919493e-50 | -8.615850e-47 |
| Msa0650790 | Msa1392910 | 0.800361 | 1.494349e-48 | -8.615850e-47 |
| Msa0213040 | Msa0650790 | 0.803532 | 3.332265e-49 | -8.615850e-47 |
| Msa0253340 | Msa0650790 | 0.802784 | 4.760417e-49 | -8.615850e-47 |
| Msa0336310 | Msa0650790 | 0.808000 | 3.840112e-50 | -8.615850e-47 |
| Msa0336320 | Msa0650790 | 0.809926 | 1.486072e-50 | -8.615850e-47 |
| Msa0579260 | Msa0650790 | 0.879740 | 9.735366e-70 | -8.615850e-47 |
| Msa0579420 | Msa0650790 | 0.895914 | 6.091662e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650790 | MtrunA17_Chr4g0043081 | 99.583 | 480 | 2 | 0 | 1 | 480 | 1 | 480 | 0.0 | 989 |
| Msa0650790 | MtrunA17_Chr5g0418841 | 86.902 | 481 | 62 | 1 | 1 | 480 | 1 | 481 | 0.0 | 885 |
| Msa0650790 | MtrunA17_Chr7g0218701 | 83.750 | 480 | 78 | 0 | 1 | 480 | 1 | 480 | 0.0 | 855 |
| Msa0650790 | MtrunA17_Chr4g0061311 | 73.362 | 473 | 124 | 2 | 3 | 473 | 4 | 476 | 0.0 | 728 |
| Msa0650790 | MtrunA17_Chr6g0454531 | 64.557 | 79 | 28 | 0 | 12 | 90 | 16 | 94 | 1.65e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650790 | AT3G29360.1 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0650790 | AT3G29360.2 | 84.167 | 480 | 76 | 0 | 1 | 480 | 1 | 480 | 0.0 | 856 |
| Msa0650790 | AT5G39320.1 | 82.845 | 478 | 82 | 0 | 1 | 478 | 1 | 478 | 0.0 | 851 |
| Msa0650790 | AT5G15490.1 | 82.708 | 480 | 83 | 0 | 1 | 480 | 1 | 480 | 0.0 | 847 |
| Msa0650790 | AT1G26570.1 | 80.457 | 481 | 93 | 1 | 1 | 480 | 1 | 481 | 0.0 | 816 |
| Msa0650790 | AT3G01010.1 | 72.393 | 163 | 40 | 2 | 318 | 480 | 1 | 158 | 6.43e-83 | 253 |
Find 126 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGATATTTATGCTAAT+TGG | 0.091386 | 4_3:-58042415 | Msa0650790:CDS |
| GTTGGTAAGCTCAGGAAAAT+TGG | 0.259126 | 4_3:-58041633 | Msa0650790:CDS |
| CATGCCTGCAGTGGCATAAA+AGG | 0.268669 | 4_3:-58041562 | Msa0650790:exon |
| GTACCCTCAGCAAGAAATTC+AGG | 0.280180 | 4_3:+58042603 | None:intergenic |
| TCTAAGAAGATTGCTGTTCT+TGG | 0.281241 | 4_3:-58042017 | Msa0650790:CDS |
| TTACTGGAAGCAAGTGATTA+AGG | 0.289704 | 4_3:-58042105 | Msa0650790:CDS |
| CTGTTCCAACCGTTGATTCT+CGG | 0.323687 | 4_3:+58042960 | None:intergenic |
| AGAGGATTCTAACTCATAAT+AGG | 0.330312 | 4_3:-58042656 | Msa0650790:CDS |
| TTGAATGCTAGTGTTGGTTT+TGG | 0.346083 | 4_3:-58042203 | Msa0650790:CDS |
| GAAAGATATTTATGCTAATT+GGG | 0.354607 | 4_3:-58042414 | Msa0650790:CDS |
| TGTTAAATCAGCCGCTTTGC+CGG | 0.358742 | 4_3:+58042779 | None:intergenic |
| ATTGCTTCAGCTGTTCTAAC+AGG | 0.364317 | 4_3:+58042681 | None:intergenic |
| AAGCGGCTGATTTAACATAC+TGG | 0.368249 | 4_3:-58042773 | Msa0650790:CDS |
| TTCATGTGGTAGCAAATTAC+TGG | 0.378490 | 4_3:-58042121 | Msa0650790:CDS |
| TGCTTTATCGAAGTTGGACT+TGG | 0.380856 | 4_3:+58041813 | None:intergenic |
| CAAGGGTTTGTTGGGAGATA+AGG | 0.381297 | 4_3:-58041937 | Msa0650790:CDS |
| GCCACTTGCTTTATCGAAGT+TGG | 0.388159 | 4_3:+58041807 | None:intergenic |
| AAAGCAAGTGGCTGTGGTTT+GGG | 0.389789 | 4_3:-58041796 | Msa0650790:CDS |
| GTCTGCTGAGCTCTCTAAAC+TGG | 0.391926 | 4_3:-58042357 | Msa0650790:CDS |
| ACCACGGTTACTGCAATCTT+AGG | 0.392452 | 4_3:+58042996 | None:intergenic |
| GGATTTATTGTTTATTCCAT+TGG | 0.392509 | 4_3:-58041612 | Msa0650790:CDS |
| ATTTGATGGTAGGAATGTTA+TGG | 0.395140 | 4_3:-58041658 | Msa0650790:CDS |
| TAAAGCAAGTGGCTGTGGTT+TGG | 0.402728 | 4_3:-58041797 | Msa0650790:CDS |
| CGATGTGTGCAAGGGTTTGT+TGG | 0.421184 | 4_3:-58041946 | Msa0650790:CDS |
| AGAGATTCTCTGTGCCAAAA+AGG | 0.424500 | 4_3:+58042325 | None:intergenic |
| TGTGGTTTGGGATGCTTATG+AGG | 0.427030 | 4_3:-58041784 | Msa0650790:CDS |
| CCACTTCGGTGCTGAAGAAA+AGG | 0.431078 | 4_3:+58042874 | None:intergenic |
| ATCCTTTATGATCTGATCTT+CGG | 0.439079 | 4_3:+58041884 | None:intergenic |
| ATGGTGAAAATTTGTTGCAT+TGG | 0.440890 | 4_3:-58043068 | Msa0650790:CDS |
| AGCCCGGATCGTGTCCTAAT+CGG | 0.446831 | 4_3:-58042479 | Msa0650790:CDS |
| CAACAACTCGGTTCACAAAC+CGG | 0.448174 | 4_3:+58042063 | None:intergenic |
| GTCTATATTTGCGAGTGTAA+TGG | 0.448773 | 4_3:-58042146 | Msa0650790:CDS |
| GTGTCTCCCTACCTCCGATT+AGG | 0.449487 | 4_3:+58042465 | None:intergenic |
| ATTACCTTGTATAGAGAAGA+TGG | 0.450940 | 4_3:+58043925 | None:intergenic |
| TGCAATCTTAGGACACTTCA+AGG | 0.467490 | 4_3:+58043007 | None:intergenic |
| GATCGCCGATGTTTCTAAAT+CGG | 0.469822 | 4_3:-58042733 | Msa0650790:CDS |
| TGGTGGCTCTTGCTTTCAGA+AGG | 0.474973 | 4_3:-58042183 | Msa0650790:CDS |
| AAAATTTGTTGCATTGGAGC+TGG | 0.481850 | 4_3:-58043062 | Msa0650790:CDS |
| TTCTCCATCTTCTCTATACA+AGG | 0.482323 | 4_3:-58043929 | Msa0650790:intron |
| GGACACGATCCGGGCTGAAA+AGG | 0.485556 | 4_3:+58042486 | None:intergenic |
| ATCGGAACAGACTCGAGGAT+TGG | 0.486245 | 4_3:-58042236 | Msa0650790:CDS |
| TTATTCCATTGGTAAGCCAC+TGG | 0.486901 | 4_3:-58041601 | Msa0650790:CDS |
| AAGCCGTGGTGAAGGAGTGC+AGG | 0.486980 | 4_3:-58042905 | Msa0650790:CDS |
| TTCGATAAAGCAAGTGGCTG+TGG | 0.488251 | 4_3:-58041802 | Msa0650790:CDS |
| TTCACCACGGCTTCAAGACC+TGG | 0.489528 | 4_3:+58042915 | None:intergenic |
| TACCGAAGATCAGATCATAA+AGG | 0.492354 | 4_3:-58041886 | Msa0650790:CDS |
| GTCGATGAAGAAATTCGATA+AGG | 0.498139 | 4_3:-58041859 | Msa0650790:CDS |
| GATGTGTGCAAGGGTTTGTT+GGG | 0.501277 | 4_3:-58041945 | Msa0650790:CDS |
| TGCAACATGTTTCTCCACTT+CGG | 0.501336 | 4_3:+58042860 | None:intergenic |
| CCCTTGCACACATCGATAGC+CGG | 0.502325 | 4_3:+58041954 | None:intergenic |
| TACCCTCAGCAAGAAATTCA+GGG | 0.503132 | 4_3:+58042604 | None:intergenic |
| AGCAACTGGTGCTGATATCT+CGG | 0.508415 | 4_3:-58042273 | Msa0650790:CDS |
| TGCATTGGAGCTGGATATGT+TGG | 0.508667 | 4_3:-58043053 | Msa0650790:CDS |
| AAAACTCATGGTCTTGGAGC+CGG | 0.509641 | 4_3:-58042798 | Msa0650790:CDS |
| TCTTGGTTTCTCTTTCAAGA+AGG | 0.511984 | 4_3:-58042000 | Msa0650790:CDS |
| TTTATCGAAGTTGGACTTGG+TGG | 0.513987 | 4_3:+58041816 | None:intergenic |
| TCAGAAGGATATAATGAACT+TGG | 0.517285 | 4_3:-58042168 | Msa0650790:CDS |
| GGTAGGAATGTTATGGATGT+TGG | 0.519091 | 4_3:-58041651 | Msa0650790:CDS |
| TCAAGACCTGGCTCGTAGAT+CGG | 0.519115 | 4_3:+58042927 | None:intergenic |
| TTATGGATGTTGGTAAGCTC+AGG | 0.521362 | 4_3:-58041641 | Msa0650790:CDS |
| GGAGACACCAGAAGGACAAA+AGG | 0.523750 | 4_3:-58042450 | Msa0650790:CDS |
| TTGGTAAGCCACTGGATCCA+TGG | 0.524811 | 4_3:-58041593 | Msa0650790:CDS |
| TTATGCTAATTGGGTCCCTA+AGG | 0.524851 | 4_3:-58042405 | Msa0650790:CDS |
| AGAAGGACACAGGCGATACA+AGG | 0.525027 | 4_3:-58041983 | Msa0650790:CDS |
| CTTGGTGGTTGAAGATGAGC+AGG | 0.525970 | 4_3:+58041831 | None:intergenic |
| ACCGGCTATCGATGTGTGCA+AGG | 0.530309 | 4_3:-58041955 | Msa0650790:CDS |
| ATTTCAGCGCCGAGAATCAA+CGG | 0.534356 | 4_3:-58042969 | Msa0650790:CDS |
| CAAGGCAATCACAGCCATTG+TGG | 0.541163 | 4_3:+58043025 | None:intergenic |
| TTCTAAATCGGACAAAATTG+TGG | 0.542076 | 4_3:-58042721 | Msa0650790:CDS |
| AACCCTGAATTTCTTGCTGA+GGG | 0.543013 | 4_3:-58042606 | Msa0650790:intron |
| AGGTCTTGAAGCCGTGGTGA+AGG | 0.543599 | 4_3:-58042913 | Msa0650790:CDS |
| TTAATGACTATCAGAAAAGC+CGG | 0.546119 | 4_3:-58042082 | Msa0650790:CDS |
| TCGGAGGTATCACACTCAAT+CGG | 0.548115 | 4_3:-58042254 | Msa0650790:CDS |
| GAGCTCAGCAGACCACAGAT+TGG | 0.552085 | 4_3:+58042367 | None:intergenic |
| AAGGCAATCACAGCCATTGT+GGG | 0.553236 | 4_3:+58043026 | None:intergenic |
| TTCTCTTTCAAGAAGGACAC+AGG | 0.554715 | 4_3:-58041993 | Msa0650790:CDS |
| TCCTTGAGCCATGGATCCAG+TGG | 0.560633 | 4_3:+58041585 | None:intergenic |
| TGGATCCAGTGGCTTACCAA+TGG | 0.562663 | 4_3:+58041596 | None:intergenic |
| CCTCCGATTAGGACACGATC+CGG | 0.564937 | 4_3:+58042476 | None:intergenic |
| ATTGGAGCTGGATATGTTGG+TGG | 0.565995 | 4_3:-58043050 | Msa0650790:CDS |
| TCGTGTCCTAATCGGAGGTA+GGG | 0.567068 | 4_3:-58042471 | Msa0650790:CDS |
| GCAGGCATGTCCTTGAGCCA+TGG | 0.569217 | 4_3:+58041576 | None:intergenic |
| CAGCGCCGAGAATCAACGGT+TGG | 0.569257 | 4_3:-58042965 | Msa0650790:CDS |
| AGGCGATACAAGGGAAGCAC+CGG | 0.573278 | 4_3:-58041973 | Msa0650790:CDS |
| TGGTGAAGGAGTGCAGGGGA+AGG | 0.576100 | 4_3:-58042899 | Msa0650790:CDS |
| AGCGGCTGATTTAACATACT+GGG | 0.577833 | 4_3:-58042772 | Msa0650790:CDS |
| CACCTACCGATCTACGAGCC+AGG | 0.578252 | 4_3:-58042933 | Msa0650790:CDS |
| AAACCCTGAATTTCTTGCTG+AGG | 0.578960 | 4_3:-58042607 | Msa0650790:CDS |
| ATCTGATCTTCGGTAACTTG+AGG | 0.579881 | 4_3:+58041894 | None:intergenic |
| TCAGCACTATGTGAAGCAAC+TGG | 0.581495 | 4_3:-58042287 | Msa0650790:CDS |
| ACACTAGCATTCAAGAACTT+AGG | 0.584911 | 4_3:+58042212 | None:intergenic |
| AAGTTCTTGAATGCTAGTGT+TGG | 0.587122 | 4_3:-58042209 | Msa0650790:CDS |
| GTTTGTTGGGAGATAAGGCA+AGG | 0.587768 | 4_3:-58041932 | Msa0650790:CDS |
| CGAGCCAGGTCTTGAAGCCG+TGG | 0.588293 | 4_3:-58042919 | Msa0650790:CDS |
| AGAAGCAACCGTGTTGAACA+TGG | 0.590789 | 4_3:+58042037 | None:intergenic |
| GCCACTGGATCCATGGCTCA+AGG | 0.597097 | 4_3:-58041586 | Msa0650790:CDS |
| TCCAACTTCGATAAAGCAAG+TGG | 0.600253 | 4_3:-58041808 | Msa0650790:CDS |
| TTTGTCCGATTTAGAAACAT+CGG | 0.602624 | 4_3:+58042728 | None:intergenic |
| AGCCGTGGTGAAGGAGTGCA+GGG | 0.608786 | 4_3:-58042904 | Msa0650790:CDS |
| AAATCATTTGCACCAATCTG+TGG | 0.612903 | 4_3:-58042379 | Msa0650790:CDS |
| ATCGTGTCCTAATCGGAGGT+AGG | 0.615001 | 4_3:-58042472 | Msa0650790:CDS |
| GCTCAAGGACATGCCTGCAG+TGG | 0.625363 | 4_3:-58041571 | Msa0650790:CDS |
| TCCCCTGCACTCCTTCACCA+CGG | 0.628514 | 4_3:+58042902 | None:intergenic |
| TGAACATGGACGCAACAACT+CGG | 0.630690 | 4_3:+58042051 | None:intergenic |
| CCGGCTATCGATGTGTGCAA+GGG | 0.631110 | 4_3:-58041954 | Msa0650790:CDS |
| CTCCGATTAGGACACGATCC+GGG | 0.633554 | 4_3:+58042477 | None:intergenic |
| GACCTGGCTCGTAGATCGGT+AGG | 0.635406 | 4_3:+58042931 | None:intergenic |
| TGTTGCGTCCATGTTCAACA+CGG | 0.638044 | 4_3:-58042045 | Msa0650790:CDS |
| GAAGGACACAGGCGATACAA+GGG | 0.639231 | 4_3:-58041982 | Msa0650790:CDS |
| GAACAGCTGAAGCAATTGAG+AGG | 0.641777 | 4_3:-58042674 | Msa0650790:CDS |
| GGAGGTAGGGAGACACCAGA+AGG | 0.655737 | 4_3:-58042458 | Msa0650790:CDS |
| CCGGATCGTGTCCTAATCGG+AGG | 0.664959 | 4_3:-58042476 | Msa0650790:CDS |
| TCCTAAGATTGCAGTAACCG+TGG | 0.667449 | 4_3:-58042997 | Msa0650790:CDS |
| CGAGTGTAATGGTCTTCATG+TGG | 0.667527 | 4_3:-58042135 | Msa0650790:CDS |
| ATATGTTGGTGGTCCCACAA+TGG | 0.680415 | 4_3:-58043039 | Msa0650790:CDS |
| CATACTGGGAGAGTTCTGCT+CGG | 0.681592 | 4_3:-58042758 | Msa0650790:CDS |
| CTGGCTCGTAGATCGGTAGG+TGG | 0.689180 | 4_3:+58042934 | None:intergenic |
| TGGTCTTGGAGCCGGCAAAG+CGG | 0.691470 | 4_3:-58042790 | Msa0650790:CDS |
| ACTCAATCGGAACAGACTCG+AGG | 0.702881 | 4_3:-58042241 | Msa0650790:CDS |
| AACTGGTGCTGATATCTCGG+AGG | 0.704506 | 4_3:-58042270 | Msa0650790:CDS |
| GTGTTTGCATTATGACTGAG+TGG | 0.706540 | 4_3:-58041743 | Msa0650790:CDS |
| TGTTTGCATTATGACTGAGT+GGG | 0.707780 | 4_3:-58041742 | Msa0650790:CDS |
| CGGCGCTGAAATATCGACCA+CGG | 0.712301 | 4_3:+58042980 | None:intergenic |
| GCCGTGGTGAAGGAGTGCAG+GGG | 0.744462 | 4_3:-58042903 | Msa0650790:CDS |
| GGTTTGGGATGCTTATGAGG+CGG | 0.748746 | 4_3:-58041781 | Msa0650790:CDS |
| GAGGCGGTGAAAGATGCACA+CGG | 0.755151 | 4_3:-58041765 | Msa0650790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATGTTTAATTATAAT+AGG | + | chr4_3:58043757-58043776 | None:intergenic | 10.0% |
| !! | AATAATACTATTAAGAATTG+TGG | + | chr4_3:58041498-58041517 | None:intergenic | 15.0% |
| !! | TAAAAGAATATTAAATCCAT+AGG | + | chr4_3:58041624-58041643 | None:intergenic | 15.0% |
| !!! | TAGAATGATTTTTTAATAAC+AGG | + | chr4_3:58041674-58041693 | None:intergenic | 15.0% |
| !!! | GTTCATAAATTATTCAATTT+TGG | - | chr4_3:58041944-58041963 | Msa0650790:CDS | 15.0% |
| !!! | GTTCATAAATTATTCAATTT+TGG | - | chr4_3:58041944-58041963 | Msa0650790:CDS | 15.0% |
| !!! | TTTTATCAATATTCAATGAA+AGG | + | chr4_3:58043941-58043960 | None:intergenic | 15.0% |
| !! | TGGCATATACTAATAAAATA+AGG | + | chr4_3:58041478-58041497 | None:intergenic | 20.0% |
| !! | TACATTCAAATGCTTATTAT+TGG | + | chr4_3:58042051-58042070 | None:intergenic | 20.0% |
| !!! | TACTTTGAAATGCTTATTAT+TGG | + | chr4_3:58042099-58042118 | None:intergenic | 20.0% |
| !! | ATATACATTATTGTTATGCA+TGG | - | chr4_3:58042119-58042138 | Msa0650790:CDS | 20.0% |
| !! | AAGTTAAGAAAAAGCAAAAA+TGG | - | chr4_3:58042180-58042199 | Msa0650790:CDS | 20.0% |
| !!! | AATTTTATCTGTAATAGGTA+CGG | - | chr4_3:58042748-58042767 | Msa0650790:CDS | 20.0% |
| !! | TGAAAGATATTTATGCTAAT+TGG | - | chr4_3:58042852-58042871 | Msa0650790:CDS | 20.0% |
| !! | GAAAGATATTTATGCTAATT+GGG | - | chr4_3:58042853-58042872 | Msa0650790:CDS | 20.0% |
| !!! | GCATATTGTCATAAATTTTT+TGG | + | chr4_3:58043573-58043592 | None:intergenic | 20.0% |
| ! | GAATATTCAATTGTACATGA+AGG | + | chr4_3:58041586-58041605 | None:intergenic | 25.0% |
| ! | ACAGACACAACATATTTATA+AGG | + | chr4_3:58041871-58041890 | None:intergenic | 25.0% |
| ! | AATTCCTGAAATAGTTAGTT+AGG | - | chr4_3:58042687-58042706 | Msa0650790:CDS | 25.0% |
| ! | ATAACCTAACTAACTATTTC+AGG | + | chr4_3:58042694-58042713 | None:intergenic | 25.0% |
| !! | GTACCAATTTTATCTGTAAT+AGG | - | chr4_3:58042743-58042762 | Msa0650790:CDS | 25.0% |
| ! | GTACCTATTACAGATAAAAT+TGG | + | chr4_3:58042749-58042768 | None:intergenic | 25.0% |
| ! | GGATTTATTGTTTATTCCAT+TGG | - | chr4_3:58043655-58043674 | Msa0650790:intron | 25.0% |
| ATTACCTTGTATAGAGAAGA+TGG | + | chr4_3:58041345-58041364 | None:intergenic | 30.0% | |
| AAAATAAGGTAGCAAGATCT+AGG | + | chr4_3:58041464-58041483 | None:intergenic | 30.0% | |
| AGTACATATGATTTCTGACA+CGG | - | chr4_3:58041749-58041768 | Msa0650790:CDS | 30.0% | |
| TGTTCACACTCAATGTTATA+TGG | + | chr4_3:58041785-58041804 | None:intergenic | 30.0% | |
| ATAACATTGAGTGTGAACAA+TGG | - | chr4_3:58041786-58041805 | Msa0650790:CDS | 30.0% | |
| AAGCAAAATGTTTCTTGACA+CGG | + | chr4_3:58041902-58041921 | None:intergenic | 30.0% | |
| AAGCAAAATGTTTCTTGACA+CGG | + | chr4_3:58041902-58041921 | None:intergenic | 30.0% | |
| !! | ATGGTGAAAATTTGTTGCAT+TGG | - | chr4_3:58042199-58042218 | Msa0650790:CDS | 30.0% |
| TTTGTCCGATTTAGAAACAT+CGG | + | chr4_3:58042542-58042561 | None:intergenic | 30.0% | |
| TTCTAAATCGGACAAAATTG+TGG | - | chr4_3:58042546-58042565 | Msa0650790:intron | 30.0% | |
| AGAGGATTCTAACTCATAAT+AGG | - | chr4_3:58042611-58042630 | Msa0650790:CDS | 30.0% | |
| ! | TGCAAATGATTTTCTCCTTA+GGG | + | chr4_3:58042880-58042899 | None:intergenic | 30.0% |
| TCAGAAGGATATAATGAACT+TGG | - | chr4_3:58043099-58043118 | Msa0650790:intron | 30.0% | |
| TTAATGACTATCAGAAAAGC+CGG | - | chr4_3:58043185-58043204 | Msa0650790:intron | 30.0% | |
| ATCCTTTATGATCTGATCTT+CGG | + | chr4_3:58043386-58043405 | None:intergenic | 30.0% | |
| !! | AAGCCAGCATTTTTATTTGA+TGG | - | chr4_3:58043595-58043614 | Msa0650790:intron | 30.0% |
| CTACCATCAAATAAAAATGC+TGG | + | chr4_3:58043601-58043620 | None:intergenic | 30.0% | |
| !! | CAGCATTTTTATTTGATGGT+AGG | - | chr4_3:58043599-58043618 | Msa0650790:intron | 30.0% |
| ! | ATTTGATGGTAGGAATGTTA+TGG | - | chr4_3:58043609-58043628 | Msa0650790:intron | 30.0% |
| TTCTCCATCTTCTCTATACA+AGG | - | chr4_3:58041338-58041357 | Msa0650790:three_prime_UTR | 35.0% | |
| ! | CTGTCACAAGATCTTTTCTT+AGG | - | chr4_3:58041406-58041425 | Msa0650790:three_prime_UTR | 35.0% |
| CTATGTTTGAGAATGTCCTA+TGG | - | chr4_3:58041605-58041624 | Msa0650790:CDS | 35.0% | |
| !! | AAAATTTGTTGCATTGGAGC+TGG | - | chr4_3:58042205-58042224 | Msa0650790:CDS | 35.0% |
| AACACACCAACAAAAACTCA+TGG | - | chr4_3:58042457-58042476 | Msa0650790:CDS | 35.0% | |
| ! | GTGCAAATGATTTTCTCCTT+AGG | + | chr4_3:58042881-58042900 | None:intergenic | 35.0% |
| AAATCATTTGCACCAATCTG+TGG | - | chr4_3:58042888-58042907 | Msa0650790:CDS | 35.0% | |
| ACACTAGCATTCAAGAACTT+AGG | + | chr4_3:58043058-58043077 | None:intergenic | 35.0% | |
| AAGTTCTTGAATGCTAGTGT+TGG | - | chr4_3:58043058-58043077 | Msa0650790:CDS | 35.0% | |
| !!! | TTGAATGCTAGTGTTGGTTT+TGG | - | chr4_3:58043064-58043083 | Msa0650790:CDS | 35.0% |
| GTCTATATTTGCGAGTGTAA+TGG | - | chr4_3:58043121-58043140 | Msa0650790:intron | 35.0% | |
| TTCATGTGGTAGCAAATTAC+TGG | - | chr4_3:58043146-58043165 | Msa0650790:intron | 35.0% | |
| TTACTGGAAGCAAGTGATTA+AGG | - | chr4_3:58043162-58043181 | Msa0650790:intron | 35.0% | |
| ! | TCTAAGAAGATTGCTGTTCT+TGG | - | chr4_3:58043250-58043269 | Msa0650790:intron | 35.0% |
| TCTTGGTTTCTCTTTCAAGA+AGG | - | chr4_3:58043267-58043286 | Msa0650790:intron | 35.0% | |
| TACCGAAGATCAGATCATAA+AGG | - | chr4_3:58043381-58043400 | Msa0650790:intron | 35.0% | |
| GTCGATGAAGAAATTCGATA+AGG | - | chr4_3:58043408-58043427 | Msa0650790:intron | 35.0% | |
| TGTTTGCATTATGACTGAGT+GGG | - | chr4_3:58043525-58043544 | Msa0650790:intron | 35.0% | |
| ATCTTGTGACAGAGACACAA+AGG | + | chr4_3:58041398-58041417 | None:intergenic | 40.0% | |
| ATCTTCATGTCACACAGTGA+AGG | - | chr4_3:58042157-58042176 | Msa0650790:CDS | 40.0% | |
| TGCAATCTTAGGACACTTCA+AGG | + | chr4_3:58042263-58042282 | None:intergenic | 40.0% | |
| TGCAACATGTTTCTCCACTT+CGG | + | chr4_3:58042410-58042429 | None:intergenic | 40.0% | |
| ! | CCAAGACCATGAGTTTTTGT+TGG | + | chr4_3:58042466-58042485 | None:intergenic | 40.0% |
| CCAACAAAAACTCATGGTCT+TGG | - | chr4_3:58042463-58042482 | Msa0650790:CDS | 40.0% | |
| ! | AAGCGGCTGATTTAACATAC+TGG | - | chr4_3:58042494-58042513 | Msa0650790:CDS | 40.0% |
| ! | AGCGGCTGATTTAACATACT+GGG | - | chr4_3:58042495-58042514 | Msa0650790:CDS | 40.0% |
| ! | GATCGCCGATGTTTCTAAAT+CGG | - | chr4_3:58042534-58042553 | Msa0650790:intron | 40.0% |
| ATTGCTTCAGCTGTTCTAAC+AGG | + | chr4_3:58042589-58042608 | None:intergenic | 40.0% | |
| AAACCCTGAATTTCTTGCTG+AGG | - | chr4_3:58042660-58042679 | Msa0650790:CDS | 40.0% | |
| AACCCTGAATTTCTTGCTGA+GGG | - | chr4_3:58042661-58042680 | Msa0650790:CDS | 40.0% | |
| TACCCTCAGCAAGAAATTCA+GGG | + | chr4_3:58042666-58042685 | None:intergenic | 40.0% | |
| ! | AATCAAAGACCTTTTCAGCC+CGG | - | chr4_3:58042772-58042791 | Msa0650790:CDS | 40.0% |
| ! | TCTATAGCCTTTTGTCCTTC+TGG | + | chr4_3:58042827-58042846 | None:intergenic | 40.0% |
| TTATGCTAATTGGGTCCCTA+AGG | - | chr4_3:58042862-58042881 | Msa0650790:CDS | 40.0% | |
| AGAGATTCTCTGTGCCAAAA+AGG | + | chr4_3:58042945-58042964 | None:intergenic | 40.0% | |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | - | chr4_3:58043067-58043086 | Msa0650790:CDS | 40.0% |
| TTCTCTTTCAAGAAGGACAC+AGG | - | chr4_3:58043274-58043293 | Msa0650790:intron | 40.0% | |
| ATCTGATCTTCGGTAACTTG+AGG | + | chr4_3:58043376-58043395 | None:intergenic | 40.0% | |
| TTTATCGAAGTTGGACTTGG+TGG | + | chr4_3:58043454-58043473 | None:intergenic | 40.0% | |
| TGCTTTATCGAAGTTGGACT+TGG | + | chr4_3:58043457-58043476 | None:intergenic | 40.0% | |
| TCCAACTTCGATAAAGCAAG+TGG | - | chr4_3:58043459-58043478 | Msa0650790:intron | 40.0% | |
| GTGTTTGCATTATGACTGAG+TGG | - | chr4_3:58043524-58043543 | Msa0650790:intron | 40.0% | |
| GGTAGGAATGTTATGGATGT+TGG | - | chr4_3:58043616-58043635 | Msa0650790:intron | 40.0% | |
| ! | TTATGGATGTTGGTAAGCTC+AGG | - | chr4_3:58043626-58043645 | Msa0650790:intron | 40.0% |
| ! | GTTGGTAAGCTCAGGAAAAT+TGG | - | chr4_3:58043634-58043653 | Msa0650790:intron | 40.0% |
| TTATTCCATTGGTAAGCCAC+TGG | - | chr4_3:58043666-58043685 | Msa0650790:intron | 40.0% | |
| TGCATTGGAGCTGGATATGT+TGG | - | chr4_3:58042214-58042233 | Msa0650790:CDS | 45.0% | |
| ATTGGAGCTGGATATGTTGG+TGG | - | chr4_3:58042217-58042236 | Msa0650790:CDS | 45.0% | |
| !! | ATATGTTGGTGGTCCCACAA+TGG | - | chr4_3:58042228-58042247 | Msa0650790:CDS | 45.0% |
| AAGGCAATCACAGCCATTGT+GGG | + | chr4_3:58042244-58042263 | None:intergenic | 45.0% | |
| TCCTAAGATTGCAGTAACCG+TGG | - | chr4_3:58042270-58042289 | Msa0650790:CDS | 45.0% | |
| ACCACGGTTACTGCAATCTT+AGG | + | chr4_3:58042274-58042293 | None:intergenic | 45.0% | |
| ! | ATTTCAGCGCCGAGAATCAA+CGG | - | chr4_3:58042298-58042317 | Msa0650790:CDS | 45.0% |
| !! | CTGTTCCAACCGTTGATTCT+CGG | + | chr4_3:58042310-58042329 | None:intergenic | 45.0% |
| ! | AAAACTCATGGTCTTGGAGC+CGG | - | chr4_3:58042469-58042488 | Msa0650790:CDS | 45.0% |
| ! | TGTTAAATCAGCCGCTTTGC+CGG | + | chr4_3:58042491-58042510 | None:intergenic | 45.0% |
| GAACAGCTGAAGCAATTGAG+AGG | - | chr4_3:58042593-58042612 | Msa0650790:intron | 45.0% | |
| GTACCCTCAGCAAGAAATTC+AGG | + | chr4_3:58042667-58042686 | None:intergenic | 45.0% | |
| TCAGCACTATGTGAAGCAAC+TGG | - | chr4_3:58042980-58042999 | Msa0650790:CDS | 45.0% | |
| !! | AGCAACTGGTGCTGATATCT+CGG | - | chr4_3:58042994-58043013 | Msa0650790:CDS | 45.0% |
| !! | TCGGAGGTATCACACTCAAT+CGG | - | chr4_3:58043013-58043032 | Msa0650790:CDS | 45.0% |
| CGAGTGTAATGGTCTTCATG+TGG | - | chr4_3:58043132-58043151 | Msa0650790:intron | 45.0% | |
| CAACAACTCGGTTCACAAAC+CGG | + | chr4_3:58043207-58043226 | None:intergenic | 45.0% | |
| TGAACATGGACGCAACAACT+CGG | + | chr4_3:58043219-58043238 | None:intergenic | 45.0% | |
| TGTTGCGTCCATGTTCAACA+CGG | - | chr4_3:58043222-58043241 | Msa0650790:intron | 45.0% | |
| AGAAGCAACCGTGTTGAACA+TGG | + | chr4_3:58043233-58043252 | None:intergenic | 45.0% | |
| ! | GATGTGTGCAAGGGTTTGTT+GGG | - | chr4_3:58043322-58043341 | Msa0650790:intron | 45.0% |
| !! | CAAGGGTTTGTTGGGAGATA+AGG | - | chr4_3:58043330-58043349 | Msa0650790:intron | 45.0% |
| ! | GTTTGTTGGGAGATAAGGCA+AGG | - | chr4_3:58043335-58043354 | Msa0650790:intron | 45.0% |
| GCCACTTGCTTTATCGAAGT+TGG | + | chr4_3:58043463-58043482 | None:intergenic | 45.0% | |
| TTCGATAAAGCAAGTGGCTG+TGG | - | chr4_3:58043465-58043484 | Msa0650790:intron | 45.0% | |
| TAAAGCAAGTGGCTGTGGTT+TGG | - | chr4_3:58043470-58043489 | Msa0650790:intron | 45.0% | |
| AAAGCAAGTGGCTGTGGTTT+GGG | - | chr4_3:58043471-58043490 | Msa0650790:intron | 45.0% | |
| ! | TGTGGTTTGGGATGCTTATG+AGG | - | chr4_3:58043483-58043502 | Msa0650790:intron | 45.0% |
| ! | GATTCCTTTTATGCCACTGC+AGG | + | chr4_3:58043712-58043731 | None:intergenic | 45.0% |
| !! | AAAAATGTTTAATTATAATA+GGG | + | chr4_3:58043756-58043775 | None:intergenic | 5.0% |
| GATGCTTGTTCTCTCTCCTC+GGG | + | chr4_3:58041813-58041832 | None:intergenic | 50.0% | |
| CGATGCTTGTTCTCTCTCCT+CGG | + | chr4_3:58041814-58041833 | None:intergenic | 50.0% | |
| CAAGGCAATCACAGCCATTG+TGG | + | chr4_3:58042245-58042264 | None:intergenic | 50.0% | |
| ! | TCAAGACCTGGCTCGTAGAT+CGG | + | chr4_3:58042343-58042362 | None:intergenic | 50.0% |
| !! | CCACTTCGGTGCTGAAGAAA+AGG | + | chr4_3:58042396-58042415 | None:intergenic | 50.0% |
| !! | CCTTTTCTTCAGCACCGAAG+TGG | - | chr4_3:58042393-58042412 | Msa0650790:CDS | 50.0% |
| CATACTGGGAGAGTTCTGCT+CGG | - | chr4_3:58042509-58042528 | Msa0650790:intron | 50.0% | |
| ATCGTGTCCTAATCGGAGGT+AGG | - | chr4_3:58042795-58042814 | Msa0650790:CDS | 50.0% | |
| TCGTGTCCTAATCGGAGGTA+GGG | - | chr4_3:58042796-58042815 | Msa0650790:CDS | 50.0% | |
| GGAGACACCAGAAGGACAAA+AGG | - | chr4_3:58042817-58042836 | Msa0650790:CDS | 50.0% | |
| GTCTGCTGAGCTCTCTAAAC+TGG | - | chr4_3:58042910-58042929 | Msa0650790:CDS | 50.0% | |
| ! | ACTGGCTGCTAACGCCTTTT+TGG | - | chr4_3:58042928-58042947 | Msa0650790:CDS | 50.0% |
| !! | AACTGGTGCTGATATCTCGG+AGG | - | chr4_3:58042997-58043016 | Msa0650790:CDS | 50.0% |
| ACTCAATCGGAACAGACTCG+AGG | - | chr4_3:58043026-58043045 | Msa0650790:CDS | 50.0% | |
| ATCGGAACAGACTCGAGGAT+TGG | - | chr4_3:58043031-58043050 | Msa0650790:CDS | 50.0% | |
| TGGTGGCTCTTGCTTTCAGA+AGG | - | chr4_3:58043084-58043103 | Msa0650790:exon | 50.0% | |
| AGAAGGACACAGGCGATACA+AGG | - | chr4_3:58043284-58043303 | Msa0650790:intron | 50.0% | |
| GAAGGACACAGGCGATACAA+GGG | - | chr4_3:58043285-58043304 | Msa0650790:intron | 50.0% | |
| CGATGTGTGCAAGGGTTTGT+TGG | - | chr4_3:58043321-58043340 | Msa0650790:intron | 50.0% | |
| ! | CTTGGTGGTTGAAGATGAGC+AGG | + | chr4_3:58043439-58043458 | None:intergenic | 50.0% |
| ! | GGTTTGGGATGCTTATGAGG+CGG | - | chr4_3:58043486-58043505 | Msa0650790:intron | 50.0% |
| TGGATCCAGTGGCTTACCAA+TGG | + | chr4_3:58043674-58043693 | None:intergenic | 50.0% | |
| TTGGTAAGCCACTGGATCCA+TGG | - | chr4_3:58043674-58043693 | Msa0650790:intron | 50.0% | |
| CATGCCTGCAGTGGCATAAA+AGG | - | chr4_3:58043705-58043724 | Msa0650790:intron | 50.0% | |
| GAGTGTGAACAATGGTCCCG+AGG | - | chr4_3:58041794-58041813 | Msa0650790:CDS | 55.0% | |
| ! | CGGCGCTGAAATATCGACCA+CGG | + | chr4_3:58042290-58042309 | None:intergenic | 55.0% |
| TTCACCACGGCTTCAAGACC+TGG | + | chr4_3:58042355-58042374 | None:intergenic | 55.0% | |
| AGGTCTTGAAGCCGTGGTGA+AGG | - | chr4_3:58042354-58042373 | Msa0650790:CDS | 55.0% | |
| AGCCCGGATCGTGTCCTAAT+CGG | - | chr4_3:58042788-58042807 | Msa0650790:CDS | 55.0% | |
| CTCCGATTAGGACACGATCC+GGG | + | chr4_3:58042793-58042812 | None:intergenic | 55.0% | |
| CCTCCGATTAGGACACGATC+CGG | + | chr4_3:58042794-58042813 | None:intergenic | 55.0% | |
| GTGTCTCCCTACCTCCGATT+AGG | + | chr4_3:58042805-58042824 | None:intergenic | 55.0% | |
| GAGCTCAGCAGACCACAGAT+TGG | + | chr4_3:58042903-58042922 | None:intergenic | 55.0% | |
| ! | AGGCGATACAAGGGAAGCAC+CGG | - | chr4_3:58043294-58043313 | Msa0650790:intron | 55.0% |
| ACCGGCTATCGATGTGTGCA+AGG | - | chr4_3:58043312-58043331 | Msa0650790:intron | 55.0% | |
| CCCTTGCACACATCGATAGC+CGG | + | chr4_3:58043316-58043335 | None:intergenic | 55.0% | |
| CCGGCTATCGATGTGTGCAA+GGG | - | chr4_3:58043313-58043332 | Msa0650790:intron | 55.0% | |
| GAGGCGGTGAAAGATGCACA+CGG | - | chr4_3:58043502-58043521 | Msa0650790:intron | 55.0% | |
| TCCTTGAGCCATGGATCCAG+TGG | + | chr4_3:58043685-58043704 | None:intergenic | 55.0% | |
| ! | CAGCGCCGAGAATCAACGGT+TGG | - | chr4_3:58042302-58042321 | Msa0650790:CDS | 60.0% |
| ! | CTGGCTCGTAGATCGGTAGG+TGG | + | chr4_3:58042336-58042355 | None:intergenic | 60.0% |
| CACCTACCGATCTACGAGCC+AGG | - | chr4_3:58042334-58042353 | Msa0650790:CDS | 60.0% | |
| ! | GACCTGGCTCGTAGATCGGT+AGG | + | chr4_3:58042339-58042358 | None:intergenic | 60.0% |
| ! | AAGCCGTGGTGAAGGAGTGC+AGG | - | chr4_3:58042362-58042381 | Msa0650790:CDS | 60.0% |
| ! | AGCCGTGGTGAAGGAGTGCA+GGG | - | chr4_3:58042363-58042382 | Msa0650790:CDS | 60.0% |
| TCCCCTGCACTCCTTCACCA+CGG | + | chr4_3:58042368-58042387 | None:intergenic | 60.0% | |
| ! | TGGTGAAGGAGTGCAGGGGA+AGG | - | chr4_3:58042368-58042387 | Msa0650790:CDS | 60.0% |
| ! | TGGTCTTGGAGCCGGCAAAG+CGG | - | chr4_3:58042477-58042496 | Msa0650790:CDS | 60.0% |
| GGACACGATCCGGGCTGAAA+AGG | + | chr4_3:58042784-58042803 | None:intergenic | 60.0% | |
| CCGGATCGTGTCCTAATCGG+AGG | - | chr4_3:58042791-58042810 | Msa0650790:CDS | 60.0% | |
| GGAGGTAGGGAGACACCAGA+AGG | - | chr4_3:58042809-58042828 | Msa0650790:CDS | 60.0% | |
| GCCACTGGATCCATGGCTCA+AGG | - | chr4_3:58043681-58043700 | Msa0650790:intron | 60.0% | |
| GCAGGCATGTCCTTGAGCCA+TGG | + | chr4_3:58043694-58043713 | None:intergenic | 60.0% | |
| GCTCAAGGACATGCCTGCAG+TGG | - | chr4_3:58043696-58043715 | Msa0650790:intron | 60.0% | |
| CGAGCCAGGTCTTGAAGCCG+TGG | - | chr4_3:58042348-58042367 | Msa0650790:CDS | 65.0% | |
| ! | GCCGTGGTGAAGGAGTGCAG+GGG | - | chr4_3:58042364-58042383 | Msa0650790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58041321 | 58043968 | 58041321 | ID=Msa0650790;Name=Msa0650790 |
| chr4_3 | mRNA | 58041321 | 58043968 | 58041321 | ID=Msa0650790-mRNA-1;Parent=Msa0650790;Name=Msa0650790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|0.5|0.33|3|245|480 |
| chr4_3 | exon | 58041321 | 58042524 | 58041321 | ID=Msa0650790-mRNA-1:exon:15283;Parent=Msa0650790-mRNA-1 |
| chr4_3 | exon | 58042607 | 58043115 | 58042607 | ID=Msa0650790-mRNA-1:exon:15282;Parent=Msa0650790-mRNA-1 |
| chr4_3 | exon | 58043930 | 58043968 | 58043930 | ID=Msa0650790-mRNA-1:exon:15281;Parent=Msa0650790-mRNA-1 |
| chr4_3 | five_prime_UTR | 58043930 | 58043968 | 58043930 | ID=Msa0650790-mRNA-1:five_prime_utr;Parent=Msa0650790-mRNA-1 |
| chr4_3 | five_prime_UTR | 58043091 | 58043115 | 58043091 | ID=Msa0650790-mRNA-1:five_prime_utr;Parent=Msa0650790-mRNA-1 |
| chr4_3 | CDS | 58042607 | 58043090 | 58042607 | ID=Msa0650790-mRNA-1:cds;Parent=Msa0650790-mRNA-1 |
| chr4_3 | CDS | 58041566 | 58042524 | 58041566 | ID=Msa0650790-mRNA-1:cds;Parent=Msa0650790-mRNA-1 |
| chr4_3 | three_prime_UTR | 58041321 | 58041565 | 58041321 | ID=Msa0650790-mRNA-1:three_prime_utr;Parent=Msa0650790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
