Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581080 | AET02943.2 | 94.915 | 236 | 2 | 2 | 1 | 234 | 1 | 228 | 9.86e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581080 | sp|O22315|SR34_ARATH | 72.170 | 212 | 43 | 2 | 1 | 204 | 1 | 204 | 5.01e-97 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581080 | G7LC00 | 94.915 | 236 | 2 | 2 | 1 | 234 | 1 | 228 | 4.71e-154 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0581080 | Msa0880030 | 0.823602 | 1.268194e-53 | -8.615850e-47 |
| Msa0581080 | Msa1126780 | 0.975370 | 7.902793e-140 | -8.615850e-47 |
| Msa0581080 | Msa1390120 | -0.812807 | 3.520189e-51 | -8.615850e-47 |
| Msa0581080 | Msa1395530 | -0.809441 | 1.889321e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581080 | MtrunA17_Chr7g0269331 | 94.915 | 236 | 2 | 2 | 1 | 234 | 1 | 228 | 1.29e-157 | 443 |
| Msa0581080 | MtrunA17_Chr1g0195251 | 78.481 | 237 | 43 | 1 | 1 | 237 | 1 | 229 | 7.19e-112 | 332 |
| Msa0581080 | MtrunA17_Chr1g0192221 | 64.639 | 263 | 73 | 3 | 1 | 251 | 32 | 286 | 1.28e-100 | 298 |
| Msa0581080 | MtrunA17_Chr7g0272311 | 74.020 | 204 | 43 | 2 | 1 | 204 | 1 | 194 | 2.82e-94 | 282 |
| Msa0581080 | MtrunA17_Chr3g0127781 | 65.385 | 208 | 52 | 2 | 1 | 196 | 1 | 200 | 8.76e-84 | 254 |
| Msa0581080 | MtrunA17_Chr8g0346471 | 34.682 | 173 | 89 | 6 | 7 | 177 | 2 | 152 | 1.28e-14 | 72.8 |
| Msa0581080 | MtrunA17_Chr7g0263341 | 46.429 | 84 | 39 | 2 | 9 | 91 | 13 | 91 | 1.02e-11 | 65.1 |
| Msa0581080 | MtrunA17_Chr1g0201001 | 32.479 | 117 | 69 | 3 | 7 | 120 | 29 | 138 | 2.51e-11 | 64.7 |
| Msa0581080 | MtrunA17_Chr1g0147821 | 48.649 | 74 | 30 | 3 | 9 | 81 | 4 | 70 | 7.54e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581080 | AT1G02840.1 | 72.170 | 212 | 43 | 2 | 1 | 204 | 1 | 204 | 5.09e-98 | 292 |
| Msa0581080 | AT1G02840.4 | 72.170 | 212 | 43 | 2 | 1 | 204 | 1 | 204 | 1.03e-97 | 290 |
| Msa0581080 | AT1G02840.5 | 72.170 | 212 | 43 | 2 | 1 | 204 | 1 | 204 | 1.03e-97 | 290 |
| Msa0581080 | AT1G02840.3 | 72.170 | 212 | 43 | 2 | 1 | 204 | 1 | 204 | 1.03e-97 | 290 |
| Msa0581080 | AT1G02840.2 | 72.642 | 212 | 42 | 2 | 1 | 204 | 1 | 204 | 1.95e-97 | 290 |
| Msa0581080 | AT4G02430.3 | 70.244 | 205 | 41 | 2 | 1 | 196 | 1 | 194 | 1.48e-89 | 270 |
| Msa0581080 | AT1G09140.3 | 69.608 | 204 | 52 | 2 | 1 | 204 | 1 | 194 | 1.78e-89 | 269 |
| Msa0581080 | AT1G09140.2 | 69.608 | 204 | 52 | 2 | 1 | 204 | 1 | 194 | 2.42e-89 | 268 |
| Msa0581080 | AT1G09140.1 | 69.608 | 204 | 52 | 2 | 1 | 204 | 1 | 194 | 2.52e-89 | 269 |
| Msa0581080 | AT4G02430.4 | 70.244 | 205 | 41 | 2 | 1 | 196 | 1 | 194 | 3.45e-89 | 270 |
| Msa0581080 | AT3G49430.2 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 5.90e-81 | 249 |
| Msa0581080 | AT3G49430.5 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 8.98e-81 | 248 |
| Msa0581080 | AT3G49430.4 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 8.98e-81 | 248 |
| Msa0581080 | AT3G49430.7 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 8.98e-81 | 248 |
| Msa0581080 | AT3G49430.1 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 8.98e-81 | 248 |
| Msa0581080 | AT3G49430.3 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 8.98e-81 | 248 |
| Msa0581080 | AT3G49430.6 | 62.319 | 207 | 59 | 2 | 1 | 196 | 1 | 199 | 8.98e-81 | 248 |
| Msa0581080 | AT4G02430.1 | 72.414 | 174 | 39 | 1 | 1 | 165 | 1 | 174 | 2.58e-80 | 243 |
| Msa0581080 | AT4G02430.2 | 67.222 | 180 | 39 | 2 | 26 | 196 | 24 | 192 | 2.73e-72 | 226 |
| Msa0581080 | AT3G61860.1 | 32.900 | 231 | 126 | 8 | 7 | 235 | 2 | 205 | 3.35e-16 | 77.8 |
| Msa0581080 | AT3G53500.2 | 45.000 | 80 | 39 | 1 | 3 | 82 | 7 | 81 | 3.22e-12 | 66.6 |
| Msa0581080 | AT2G24590.1 | 50.685 | 73 | 30 | 2 | 9 | 81 | 4 | 70 | 2.42e-11 | 62.8 |
| Msa0581080 | AT4G31580.2 | 49.315 | 73 | 31 | 2 | 9 | 81 | 4 | 70 | 3.00e-11 | 62.4 |
| Msa0581080 | AT4G31580.1 | 49.315 | 73 | 31 | 2 | 9 | 81 | 4 | 70 | 3.00e-11 | 62.4 |
| Msa0581080 | AT5G52040.2 | 45.946 | 74 | 33 | 2 | 7 | 78 | 2 | 70 | 4.54e-11 | 63.9 |
| Msa0581080 | AT5G52040.1 | 45.946 | 74 | 33 | 2 | 7 | 78 | 2 | 70 | 4.95e-11 | 63.5 |
| Msa0581080 | AT2G37340.1 | 43.750 | 80 | 40 | 1 | 3 | 82 | 7 | 81 | 5.28e-11 | 63.2 |
Find 129 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTGAGAAATACTTATT+TGG | 0.134144 | 4_1:+86425363 | Msa0581080:three_prime_UTR |
| CATACTGGAAATTGGAAATT+AGG | 0.197473 | 4_1:+86424102 | Msa0581080:CDS |
| CCTTTGATTTGAGGGGTAAA+TGG | 0.218382 | 4_1:-86420931 | None:intergenic |
| TCTAGATCCCGCTCTTTATC+AGG | 0.247387 | 4_1:+86423293 | Msa0581080:CDS |
| AACTATTTGGTTCCTTGTTT+GGG | 0.247699 | 4_1:+86425504 | Msa0581080:three_prime_UTR |
| GAACTATTTGGTTCCTTGTT+TGG | 0.251807 | 4_1:+86425503 | Msa0581080:three_prime_UTR |
| GAGCCTCTTCTCCACTTATA+TGG | 0.283554 | 4_1:+86422697 | Msa0581080:CDS |
| GTTTGGGCACACTTGGTAAT+TGG | 0.284837 | 4_1:+86425520 | Msa0581080:three_prime_UTR |
| ATTAGGGACTTGGTGGGATT+TGG | 0.289557 | 4_1:+86424119 | Msa0581080:CDS |
| TAGTAGATTGTTGAACTATT+TGG | 0.289716 | 4_1:+86425491 | Msa0581080:three_prime_UTR |
| ACTTGCGGCATACTGGAAAT+TGG | 0.315128 | 4_1:+86424094 | Msa0581080:CDS |
| GGGGCCTTGGCGGAACCTTT+AGG | 0.318746 | 4_1:-86421690 | None:intergenic |
| TACTTGAGACCTGTGCCTTT+GGG | 0.324327 | 4_1:+86425424 | Msa0581080:three_prime_UTR |
| CTACGGCTCCTGCTCCTACT+TGG | 0.345238 | 4_1:-86425135 | None:intergenic |
| AGCAATGGCCGGGGTGGACG+CGG | 0.347817 | 4_1:+86422088 | Msa0581080:CDS |
| CTTTGATTTGAGGGGTAAAT+GGG | 0.351524 | 4_1:-86420930 | None:intergenic |
| GTACTTGAGACCTGTGCCTT+TGG | 0.351821 | 4_1:+86425423 | Msa0581080:three_prime_UTR |
| TGGCTGAGAAATACTTATTT+GGG | 0.353579 | 4_1:+86425364 | Msa0581080:three_prime_UTR |
| TTAAGTTATGAGGAATTTGA+TGG | 0.366073 | 4_1:+86425451 | Msa0581080:three_prime_UTR |
| AGCTTGATGACTCCGAGTTC+CGG | 0.370233 | 4_1:+86422841 | Msa0581080:CDS |
| GAACGAGAAACTGATCTTGC+AGG | 0.371081 | 4_1:-86423260 | None:intergenic |
| ATACTGGAAATTGGAAATTA+GGG | 0.377867 | 4_1:+86424103 | Msa0581080:CDS |
| GGGGTGGACGCGGGGTATCC+AGG | 0.383584 | 4_1:+86422098 | Msa0581080:CDS |
| TGCATCCTGGCAGGATCTTA+AGG | 0.383895 | 4_1:+86422248 | Msa0581080:CDS |
| TATTTGAACTTTAAACTCTC+TGG | 0.388662 | 4_1:+86425394 | Msa0581080:three_prime_UTR |
| CCGCAGCCGTAGCGACAGTC+CGG | 0.397841 | 4_1:+86423080 | Msa0581080:CDS |
| AATCTTCAACTTCTCTTTCA+CGG | 0.399167 | 4_1:-86421224 | None:intergenic |
| ATTGGAAACTTGCGGCATAC+TGG | 0.412308 | 4_1:+86424087 | Msa0581080:CDS |
| CAGGATCACATGCGAAAAGC+TGG | 0.413996 | 4_1:+86422353 | Msa0581080:intron |
| AGATATAACCAACCCGTAAT+CGG | 0.416963 | 4_1:-86421899 | None:intergenic |
| AATTCACTCACCAGAGGTAA+TGG | 0.426222 | 4_1:-86424838 | None:intergenic |
| TTTGGGCATCTTAAGTTATG+AGG | 0.426554 | 4_1:+86425441 | Msa0581080:three_prime_UTR |
| GTTCCTTGTTTGGGCACACT+TGG | 0.432450 | 4_1:+86425513 | Msa0581080:three_prime_UTR |
| TTTCTAGTAATATTTGACTT+TGG | 0.432664 | 4_1:+86425344 | Msa0581080:three_prime_UTR |
| GCAATGGCCGGGGTGGACGC+GGG | 0.434998 | 4_1:+86422089 | Msa0581080:CDS |
| ATCGAGTTACCTTTGATTTG+AGG | 0.436352 | 4_1:-86420940 | None:intergenic |
| GCAGATCACGGTCAAGGTCT+AGG | 0.440577 | 4_1:+86424812 | Msa0581080:intron |
| GCCCTCTTCTGCATCCTGGC+AGG | 0.444232 | 4_1:+86422239 | Msa0581080:CDS |
| AATAAATAAAACCATATAAG+TGG | 0.446087 | 4_1:-86422708 | None:intergenic |
| TCCACAACAAATTGAGTTGT+AGG | 0.456640 | 4_1:-86424150 | None:intergenic |
| GAGGCTGCACATGGCGGTCG+TGG | 0.456810 | 4_1:+86422031 | Msa0581080:CDS |
| AGTTGAAGATTTGTTTATGA+AGG | 0.457526 | 4_1:+86421236 | Msa0581080:CDS |
| GACTCTAGAAGTCCTGGTCG+TGG | 0.466709 | 4_1:+86423009 | Msa0581080:CDS |
| TCGAGTTACCTTTGATTTGA+GGG | 0.466722 | 4_1:-86420939 | None:intergenic |
| GACTGCCCTCTTCTGCATCC+TGG | 0.467631 | 4_1:+86422235 | Msa0581080:CDS |
| ACCTCGACAAATGCATAGCC+AGG | 0.467853 | 4_1:-86421712 | None:intergenic |
| GTCAAACAGCAAATCTCCTA+AGG | 0.468070 | 4_1:+86423205 | Msa0581080:CDS |
| GATTGATTTGCAGGTACTAC+CGG | 0.470285 | 4_1:+86422632 | Msa0581080:intron |
| ACAGCAGTCACAGCAATGGC+CGG | 0.479635 | 4_1:+86422077 | Msa0581080:CDS |
| GAAATTGGAAATTAGGGACT+TGG | 0.485733 | 4_1:+86424109 | Msa0581080:CDS |
| CAGCAGTCACAGCAATGGCC+GGG | 0.486619 | 4_1:+86422078 | Msa0581080:CDS |
| ATTGGAAATTAGGGACTTGG+TGG | 0.490526 | 4_1:+86424112 | Msa0581080:CDS |
| GTCTAGGTCTCCATTACCTC+TGG | 0.491186 | 4_1:+86424828 | Msa0581080:CDS |
| TAAAGAGCGGGATCTAGATC+TGG | 0.494883 | 4_1:-86423288 | None:intergenic |
| CCGGACTGTCGCTACGGCTG+CGG | 0.506949 | 4_1:-86423080 | None:intergenic |
| GATCTTGCAGGAGATTTAGC+TGG | 0.507600 | 4_1:-86423248 | None:intergenic |
| CAATGGCCGGGGTGGACGCG+GGG | 0.514949 | 4_1:+86422090 | Msa0581080:CDS |
| ACCACGATATTCAGAGCGCC+TGG | 0.518470 | 4_1:-86422116 | None:intergenic |
| TGCAGGTACTACCGGGATTG+TGG | 0.518632 | 4_1:+86422640 | Msa0581080:intron |
| GCCTACAACTCAATTTGTTG+TGG | 0.522039 | 4_1:+86424149 | Msa0581080:CDS |
| TTGGAAATTAGGGACTTGGT+GGG | 0.523036 | 4_1:+86424113 | Msa0581080:CDS |
| CATAACTCACATTGACCTAA+AGG | 0.524766 | 4_1:+86421675 | Msa0581080:CDS |
| TCTCTTTCACGGATATCGCC+AGG | 0.525115 | 4_1:-86421213 | None:intergenic |
| GCAGGAGTCCAAGTAGGAGC+AGG | 0.530125 | 4_1:+86425127 | Msa0581080:CDS |
| AGGCGGGACTCTAGAAGTCC+TGG | 0.532405 | 4_1:+86423003 | Msa0581080:CDS |
| TGTTGCCGCGAGAGCTTCGA+AGG | 0.537192 | 4_1:-86420898 | None:intergenic |
| TCTCACCTTAAGATCCTGCC+AGG | 0.539635 | 4_1:-86422253 | None:intergenic |
| AGGATCACATGCGAAAAGCT+GGG | 0.542509 | 4_1:+86422354 | Msa0581080:intron |
| GCCGTAGCAAGAGTTTGTCC+AGG | 0.544644 | 4_1:+86425151 | Msa0581080:CDS |
| TCTACTACCATATAAAATCA+AGG | 0.545873 | 4_1:-86425475 | None:intergenic |
| TGCGGCTGCGACTACGACTG+CGG | 0.546200 | 4_1:-86423062 | None:intergenic |
| TTTCTTAGATTGGAAACTTG+CGG | 0.547983 | 4_1:+86424079 | Msa0581080:intron |
| CTTAAGATGCCCAAAGGCAC+AGG | 0.549576 | 4_1:-86425433 | None:intergenic |
| ACTCTAGAAGTCCTGGTCGT+GGG | 0.552106 | 4_1:+86423010 | Msa0581080:CDS |
| AGCAGTCACAGCAATGGCCG+GGG | 0.555032 | 4_1:+86422079 | Msa0581080:CDS |
| TGGATACCCCGCGTCCACCC+CGG | 0.555086 | 4_1:-86422096 | None:intergenic |
| ATTGATTTGCAGGTACTACC+GGG | 0.557644 | 4_1:+86422633 | Msa0581080:intron |
| GAATGAGAAGGCCCACGACC+AGG | 0.558643 | 4_1:-86423021 | None:intergenic |
| GTGCTAGCAGGAGTCCAAGT+AGG | 0.558874 | 4_1:+86425121 | Msa0581080:CDS |
| ACCTGGACAAACTCTTGCTA+CGG | 0.558954 | 4_1:-86425152 | None:intergenic |
| AAACCATATAAGTGGAGAAG+AGG | 0.564566 | 4_1:-86422700 | None:intergenic |
| TCCTGCCAGGATGCAGAAGA+GGG | 0.565631 | 4_1:-86422240 | None:intergenic |
| GATGCAATTCGCGGTCGTGA+TGG | 0.566019 | 4_1:+86421858 | Msa0581080:CDS |
| ATCATACCCTGATAAAGAGC+GGG | 0.566086 | 4_1:-86423300 | None:intergenic |
| TACAACTCAATTTGTTGTGG+AGG | 0.566703 | 4_1:+86424152 | Msa0581080:CDS |
| AAATACCTTCTGCTATGGCC+CGG | 0.567658 | 4_1:-86423099 | None:intergenic |
| GATTGTTACTAATGAAGAAG+TGG | 0.569587 | 4_1:+86425293 | Msa0581080:exon |
| TTACCAAGTGTGCCCAAACA+AGG | 0.570769 | 4_1:-86425516 | None:intergenic |
| GTTGGAAATACCTTCTGCTA+TGG | 0.570823 | 4_1:-86423104 | None:intergenic |
| GAGGGGTAAATGGGGATCGG+TGG | 0.571107 | 4_1:-86420921 | None:intergenic |
| CGAGTTACCTTTGATTTGAG+GGG | 0.572610 | 4_1:-86420938 | None:intergenic |
| CCATTTACCCCTCAAATCAA+AGG | 0.575871 | 4_1:+86420931 | Msa0581080:five_prime_UTR |
| CGCAGCCGTAGCGACAGTCC+GGG | 0.576383 | 4_1:+86423081 | Msa0581080:CDS |
| TCGAGCAGAACCGTGTATGT+TGG | 0.576534 | 4_1:+86421183 | Msa0581080:CDS |
| TTTGAGGGGTAAATGGGGAT+CGG | 0.577854 | 4_1:-86420924 | None:intergenic |
| ACGACCGCGAATTGCATCCT+CGG | 0.584181 | 4_1:-86421853 | None:intergenic |
| CTAGATCCCGCTCTTTATCA+GGG | 0.585371 | 4_1:+86423294 | Msa0581080:CDS |
| ATCCTGCCAGGATGCAGAAG+AGG | 0.589165 | 4_1:-86422241 | None:intergenic |
| ACAGTCCGGGCCATAGCAGA+AGG | 0.593328 | 4_1:+86423094 | Msa0581080:CDS |
| TCATACACGAACGTAAGACT+TGG | 0.593435 | 4_1:-86422874 | None:intergenic |
| TTTAGCTGGTGAACGTTGTG+TGG | 0.599751 | 4_1:-86423234 | None:intergenic |
| CGTGGGCCTTCTCATTCTAG+AGG | 0.605800 | 4_1:+86423027 | Msa0581080:CDS |
| TATGGCCCGGACTGTCGCTA+CGG | 0.607162 | 4_1:-86423086 | None:intergenic |
| CCTCGACAAATGCATAGCCA+GGG | 0.607600 | 4_1:-86421711 | None:intergenic |
| AGGTGAGGGAATATGATTCG+AGG | 0.609002 | 4_1:+86422983 | Msa0581080:intron |
| GATGCCGAGGATGCAATTCG+CGG | 0.609063 | 4_1:+86421849 | Msa0581080:CDS |
| TCAAACAGCAAATCTCCTAA+GGG | 0.610559 | 4_1:+86423206 | Msa0581080:CDS |
| GTGTATGTTGGAAATCTACC+TGG | 0.612904 | 4_1:+86421195 | Msa0581080:CDS |
| GAGGGAATATGATTCGAGGC+GGG | 0.617120 | 4_1:+86422987 | Msa0581080:CDS |
| TTATAGGTGGAGGCTGCACA+TGG | 0.617981 | 4_1:+86422022 | Msa0581080:intron |
| CTTCTTCCTCTAGAATGAGA+AGG | 0.622211 | 4_1:-86423033 | None:intergenic |
| CGATACAGCAGTCACAGCAA+TGG | 0.624303 | 4_1:+86422073 | Msa0581080:CDS |
| GTTTGTGTAATCCACAATCC+CGG | 0.625161 | 4_1:-86422651 | None:intergenic |
| TGAAGATGTTCAAGATGCCG+AGG | 0.626553 | 4_1:+86421836 | Msa0581080:CDS |
| ACTAATGAAGAAGTGGATGA+TGG | 0.627701 | 4_1:+86425300 | Msa0581080:three_prime_UTR |
| CCCTGGCTATGCATTTGTCG+AGG | 0.628385 | 4_1:+86421711 | Msa0581080:CDS |
| GGATCACATGCGAAAAGCTG+GGG | 0.630537 | 4_1:+86422355 | Msa0581080:intron |
| TTTGATTTGAGGGGTAAATG+GGG | 0.638595 | 4_1:-86420929 | None:intergenic |
| AGGTAGATTTCCAACATACA+CGG | 0.648245 | 4_1:-86421193 | None:intergenic |
| TCCAGGCGCTCTGAATATCG+TGG | 0.656235 | 4_1:+86422115 | Msa0581080:CDS |
| AGTCACAGCAATGGCCGGGG+TGG | 0.660201 | 4_1:+86422082 | Msa0581080:CDS |
| CTCGACAAATGCATAGCCAG+GGG | 0.667713 | 4_1:-86421710 | None:intergenic |
| TATCATACCCTGATAAAGAG+CGG | 0.674577 | 4_1:-86423301 | None:intergenic |
| TGAGGGAATATGATTCGAGG+CGG | 0.676478 | 4_1:+86422986 | Msa0581080:CDS |
| TCATAACTTAAGATGCCCAA+AGG | 0.677674 | 4_1:-86425439 | None:intergenic |
| TTGACCTAAAGGTTCCGCCA+AGG | 0.681450 | 4_1:+86421686 | Msa0581080:CDS |
| TAGGTGGAGGCTGCACATGG+CGG | 0.727287 | 4_1:+86422025 | Msa0581080:intron |
| TCGACAAATGCATAGCCAGG+GGG | 0.752456 | 4_1:-86421709 | None:intergenic |
| GAAGTGGATGATGGTCAGTG+TGG | 0.762376 | 4_1:+86425309 | Msa0581080:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTATGTTTTATTTG+AGG | + | chr4_1:86422156-86422175 | Msa0581080:intron | 10.0% |
| !! | GAAAGAAAAAAATTAAAATA+TGG | - | chr4_1:86423169-86423188 | None:intergenic | 10.0% |
| !!! | AAGCATTTTAATTATTTATT+TGG | + | chr4_1:86423408-86423427 | Msa0581080:intron | 10.0% |
| !! | AAGAAAAAAAATATTAAAAG+AGG | - | chr4_1:86423907-86423926 | None:intergenic | 10.0% |
| !!! | CAAAACATTTTTTATTTATA+AGG | - | chr4_1:86425563-86425582 | None:intergenic | 10.0% |
| !! | GATAAAAAAATGAAATTGAA+GGG | - | chr4_1:86420992-86421011 | None:intergenic | 15.0% |
| !! | TGATAAAAAAATGAAATTGA+AGG | - | chr4_1:86420993-86421012 | None:intergenic | 15.0% |
| !!! | TTGATTATTTAATTTGTTAC+AGG | + | chr4_1:86421140-86421159 | Msa0581080:intron | 15.0% |
| !! | TTAAAGTAGGATTTAAATTA+AGG | + | chr4_1:86421445-86421464 | Msa0581080:intron | 15.0% |
| !! | AAAAAAAAAAAAGCAAAACA+GGG | - | chr4_1:86421772-86421791 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAGCAAAAC+AGG | - | chr4_1:86421773-86421792 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCCTAATAG+AGG | + | chr4_1:86421797-86421816 | Msa0581080:intron | 15.0% |
| !! | TTAAACAGTATTAAGAATTA+AGG | - | chr4_1:86421992-86422011 | None:intergenic | 15.0% |
| !! | GTTTAAATTTGTATGTTTAT+AGG | + | chr4_1:86422006-86422025 | Msa0581080:intron | 15.0% |
| !! | ACTAATACATAAAATCTAAA+GGG | - | chr4_1:86422456-86422475 | None:intergenic | 15.0% |
| !! | TACTAATACATAAAATCTAA+AGG | - | chr4_1:86422457-86422476 | None:intergenic | 15.0% |
| !! | AATAAATAAAACCATATAAG+TGG | - | chr4_1:86422711-86422730 | None:intergenic | 15.0% |
| !!! | TATGGTTTTATTTATTTTGA+AGG | + | chr4_1:86422715-86422734 | Msa0581080:intron | 15.0% |
| !!! | TTACACTTTTAATAAAAGAA+GGG | - | chr4_1:86423835-86423854 | None:intergenic | 15.0% |
| !! | GAAAGAAAAAAAAATGATAT+GGG | - | chr4_1:86423962-86423981 | None:intergenic | 15.0% |
| !! | TGAAAGAAAAAAAAATGATA+TGG | - | chr4_1:86423963-86423982 | None:intergenic | 15.0% |
| !! | ATAAATAAAATCATTAGTTG+AGG | - | chr4_1:86425073-86425092 | None:intergenic | 15.0% |
| !!! | TTTTTAGGGTTTTAATTTTG+GGG | - | chr4_1:86420878-86420897 | None:intergenic | 20.0% |
| !!! | GTTTTTAGGGTTTTAATTTT+GGG | - | chr4_1:86420879-86420898 | None:intergenic | 20.0% |
| !!! | TAATTTTTTTCAACCAATTG+TGG | - | chr4_1:86421097-86421116 | None:intergenic | 20.0% |
| !!! | AAATTAAGGTGGTTTTTTTA+TGG | + | chr4_1:86421459-86421478 | Msa0581080:intron | 20.0% |
| !!! | TAATGTTTTGTTGGAATTTT+CGG | + | chr4_1:86421598-86421617 | Msa0581080:intron | 20.0% |
| !! | AAAAGTGAAATACATAAGAT+AGG | - | chr4_1:86421643-86421662 | None:intergenic | 20.0% |
| !! | AGTTATAAGATTATTAAAGC+AGG | - | chr4_1:86421933-86421952 | None:intergenic | 20.0% |
| !! | TAAATTTGTATGTTTATAGG+TGG | + | chr4_1:86422009-86422028 | Msa0581080:intron | 20.0% |
| !! | GAATAACTTATCTAACAAAA+TGG | - | chr4_1:86422292-86422311 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGAAGGATATCA+TGG | + | chr4_1:86422724-86422743 | Msa0581080:intron | 20.0% |
| !! | ACAATCTAGATAATTATAAG+AGG | - | chr4_1:86422780-86422799 | None:intergenic | 20.0% |
| !!! | AAGTTTTAACAATCAAATTC+AGG | - | chr4_1:86422900-86422919 | None:intergenic | 20.0% |
| !! | AAATATGGAATCTTTATAGA+AGG | - | chr4_1:86423154-86423173 | None:intergenic | 20.0% |
| !!! | TTGATAATGAACAGAATAAA+AGG | + | chr4_1:86423525-86423544 | Msa0581080:intron | 20.0% |
| !! | TTTAAGAAAACAAGTTTACT+AGG | - | chr4_1:86423810-86423829 | None:intergenic | 20.0% |
| !!! | GTTACACTTTTAATAAAAGA+AGG | - | chr4_1:86423836-86423855 | None:intergenic | 20.0% |
| !! | AAAAAAAAATGATATGGGAA+GGG | - | chr4_1:86423957-86423976 | None:intergenic | 20.0% |
| !!! | GATTTATACTATGTTATTTG+TGG | + | chr4_1:86424782-86424801 | Msa0581080:intron | 20.0% |
| !!! | GTGTCTTTATTAATTTTGTT+TGG | + | chr4_1:86425217-86425236 | Msa0581080:intron | 20.0% |
| !!! | TTTCTAGTAATATTTGACTT+TGG | + | chr4_1:86425344-86425363 | Msa0581080:three_prime_UTR | 20.0% |
| !!! | TTTTAGGGTTTTAATTTTGG+GGG | - | chr4_1:86420877-86420896 | None:intergenic | 25.0% |
| !!! | GGTTTTTAGGGTTTTAATTT+TGG | - | chr4_1:86420880-86420899 | None:intergenic | 25.0% |
| !! | AGTTGAAGATTTGTTTATGA+AGG | + | chr4_1:86421236-86421255 | Msa0581080:CDS | 25.0% |
| !!! | TCTGCTTTTTAATTTTGATC+TGG | + | chr4_1:86421276-86421295 | Msa0581080:intron | 25.0% |
| ! | TATAAATCATAGCAAGCTTA+TGG | - | chr4_1:86421381-86421400 | None:intergenic | 25.0% |
| ! | CAATAAAATTAAGCCAATGT+AGG | - | chr4_1:86421404-86421423 | None:intergenic | 25.0% |
| !! | TTAATTTTATTGACCAAGTG+TGG | + | chr4_1:86421412-86421431 | Msa0581080:intron | 25.0% |
| ! | AAGTAGGATTTAAATTAAGG+TGG | + | chr4_1:86421448-86421467 | Msa0581080:intron | 25.0% |
| ! | TATGGATGATAATTTCACTA+AGG | + | chr4_1:86421477-86421496 | Msa0581080:intron | 25.0% |
| !! | ACATGTGATTAATGTTTTGT+TGG | + | chr4_1:86421589-86421608 | Msa0581080:intron | 25.0% |
| !!! | TGTATTTCACTTTTGTAGTA+TGG | + | chr4_1:86421649-86421668 | Msa0581080:intron | 25.0% |
| !!! | GTTTTATTTGAGGATGTTTT+TGG | + | chr4_1:86422166-86422185 | Msa0581080:intron | 25.0% |
| ! | TAATATAATAGATGCCAGAA+GGG | - | chr4_1:86422525-86422544 | None:intergenic | 25.0% |
| ! | TATTAGTTCCGTCTATATTA+TGG | + | chr4_1:86422540-86422559 | Msa0581080:intron | 25.0% |
| !!! | ATATATTGTGATTGATTTGC+AGG | + | chr4_1:86422623-86422642 | Msa0581080:intron | 25.0% |
| ! | ATGAACAGAATAAAAGGAAT+TGG | + | chr4_1:86423531-86423550 | Msa0581080:intron | 25.0% |
| !! | AATTCATGCATATCTTTTCT+TGG | + | chr4_1:86423580-86423599 | Msa0581080:intron | 25.0% |
| ! | GAAAAAAAAATGATATGGGA+AGG | - | chr4_1:86423958-86423977 | None:intergenic | 25.0% |
| !! | GGAATTTTCACAAAAACAAA+AGG | - | chr4_1:86424052-86424071 | None:intergenic | 25.0% |
| !!! | TCCTTTGTTTTTTCTTAGAT+TGG | + | chr4_1:86424069-86424088 | Msa0581080:intron | 25.0% |
| ! | TCCAATCTAAGAAAAAACAA+AGG | - | chr4_1:86424073-86424092 | None:intergenic | 25.0% |
| ! | ATACTGGAAATTGGAAATTA+GGG | + | chr4_1:86424103-86424122 | Msa0581080:CDS | 25.0% |
| ! | TTAGAACAAATGTACTATGA+GGG | - | chr4_1:86424210-86424229 | None:intergenic | 25.0% |
| ! | ATTAGAACAAATGTACTATG+AGG | - | chr4_1:86424211-86424230 | None:intergenic | 25.0% |
| ! | TCTTGTGTTAAAAGGAAATT+AGG | + | chr4_1:86424308-86424327 | Msa0581080:intron | 25.0% |
| ! | GTTAAAAGGAAATTAGGATT+TGG | + | chr4_1:86424314-86424333 | Msa0581080:intron | 25.0% |
| ! | GGATAATTTCATTACAATTG+CGG | + | chr4_1:86424360-86424379 | Msa0581080:intron | 25.0% |
| ! | GATAATTTCATTACAATTGC+GGG | + | chr4_1:86424361-86424380 | Msa0581080:intron | 25.0% |
| ! | ATGATAAATAAACAATCCCA+AGG | - | chr4_1:86424490-86424509 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTTTACCTCTCT+TGG | + | chr4_1:86424600-86424619 | Msa0581080:intron | 25.0% |
| !!! | TTTGTTTTTTTACCTCTCTT+GGG | + | chr4_1:86424601-86424620 | Msa0581080:intron | 25.0% |
| !!! | ATTTGTTTTTTTACCTCTCT+TGG | + | chr4_1:86424600-86424619 | Msa0581080:intron | 25.0% |
| !!! | TTTGTTTTTTTACCTCTCTT+GGG | + | chr4_1:86424601-86424620 | Msa0581080:intron | 25.0% |
| ! | TGTTGGATCAAATTTGATAA+GGG | + | chr4_1:86424751-86424770 | Msa0581080:intron | 25.0% |
| ! | GAAGCAAATTAAATGTTCAA+TGG | - | chr4_1:86424875-86424894 | None:intergenic | 25.0% |
| ! | AAAACTATACGTAACTTTCT+TGG | - | chr4_1:86425031-86425050 | None:intergenic | 25.0% |
| !! | AAGAAAGTTACGTATAGTTT+TGG | + | chr4_1:86425030-86425049 | Msa0581080:intron | 25.0% |
| !!! | TACGTATAGTTTTGGTATTT+TGG | + | chr4_1:86425038-86425057 | Msa0581080:intron | 25.0% |
| !!! | ACGTATAGTTTTGGTATTTT+GGG | + | chr4_1:86425039-86425058 | Msa0581080:intron | 25.0% |
| ! | CATGGCAATTTCATTAAAAA+AGG | - | chr4_1:86425191-86425210 | None:intergenic | 25.0% |
| ! | TATTTGAACTTTAAACTCTC+TGG | + | chr4_1:86425394-86425413 | Msa0581080:three_prime_UTR | 25.0% |
| ! | TTAAGTTATGAGGAATTTGA+TGG | + | chr4_1:86425451-86425470 | Msa0581080:three_prime_UTR | 25.0% |
| ! | TCTACTACCATATAAAATCA+AGG | - | chr4_1:86425478-86425497 | None:intergenic | 25.0% |
| ! | TAGTAGATTGTTGAACTATT+TGG | + | chr4_1:86425491-86425510 | Msa0581080:three_prime_UTR | 25.0% |
| !!! | TTTAGGGTTTTAATTTTGGG+GGG | - | chr4_1:86420876-86420895 | None:intergenic | 30.0% |
| ATCAAAGGTAACTCGATATT+AGG | + | chr4_1:86420946-86420965 | Msa0581080:intron | 30.0% | |
| TCAAAGGTAACTCGATATTA+GGG | + | chr4_1:86420947-86420966 | Msa0581080:intron | 30.0% | |
| AATCTTCAACTTCTCTTTCA+CGG | - | chr4_1:86421227-86421246 | None:intergenic | 30.0% | |
| GCTATGATTTATACCTACAT+TGG | + | chr4_1:86421388-86421407 | Msa0581080:intron | 30.0% | |
| TGGATTTCACTAGTTAAAGT+AGG | + | chr4_1:86421432-86421451 | Msa0581080:intron | 30.0% | |
| !! | CATAAAGTTGTTTTCTGATG+TGG | + | chr4_1:86421543-86421562 | Msa0581080:intron | 30.0% |
| GCAAAAATAAGACCTCTATT+AGG | - | chr4_1:86421812-86421831 | None:intergenic | 30.0% | |
| !! | GTGATGGTTATGATTTTGAT+GGG | + | chr4_1:86421874-86421893 | Msa0581080:CDS | 30.0% |
| AATTGCTTATACCAGAAGAA+TGG | + | chr4_1:86421955-86421974 | Msa0581080:intron | 30.0% | |
| ATTTGTATGTTTATAGGTGG+AGG | + | chr4_1:86422012-86422031 | Msa0581080:intron | 30.0% | |
| !!! | GGTATGCTTTTGAAATCATT+TGG | + | chr4_1:86422187-86422206 | Msa0581080:intron | 30.0% |
| AATAGTGGTTTCTTAAATGC+AGG | + | chr4_1:86422334-86422353 | Msa0581080:intron | 30.0% | |
| ! | TTTTCCCAAGTTTTTCATGA+TGG | + | chr4_1:86422386-86422405 | Msa0581080:CDS | 30.0% |
| AATATAATAGATGCCAGAAG+GGG | - | chr4_1:86422524-86422543 | None:intergenic | 30.0% | |
| CTAATATAATAGATGCCAGA+AGG | - | chr4_1:86422526-86422545 | None:intergenic | 30.0% | |
| ! | TAAGAGTCTAAGATACATGT+TGG | - | chr4_1:86423125-86423144 | None:intergenic | 30.0% |
| TGGGGTACATTCTTTAATTA+TGG | + | chr4_1:86423499-86423518 | Msa0581080:intron | 30.0% | |
| GGGGTACATTCTTTAATTAT+GGG | + | chr4_1:86423500-86423519 | Msa0581080:intron | 30.0% | |
| TTGTCTTTGTCCTATTTAAC+AGG | + | chr4_1:86423657-86423676 | Msa0581080:intron | 30.0% | |
| TGTCCTATTTAACAGGTTAA+AGG | + | chr4_1:86423664-86423683 | Msa0581080:intron | 30.0% | |
| ACTCCTTTAACCTGTTAAAT+AGG | - | chr4_1:86423670-86423689 | None:intergenic | 30.0% | |
| !!! | AAAGTTATTTTTGCCATCTG+TGG | + | chr4_1:86423766-86423785 | Msa0581080:intron | 30.0% |
| TGAAAGAAAACATTCCAACA+TGG | - | chr4_1:86424025-86424044 | None:intergenic | 30.0% | |
| TTTCTTAGATTGGAAACTTG+CGG | + | chr4_1:86424079-86424098 | Msa0581080:intron | 30.0% | |
| CATACTGGAAATTGGAAATT+AGG | + | chr4_1:86424102-86424121 | Msa0581080:CDS | 30.0% | |
| !! | AGGTATGGTATTTTTCAGAT+GGG | + | chr4_1:86424172-86424191 | Msa0581080:intron | 30.0% |
| GTGTCTTAATGTTTAACCTT+GGG | + | chr4_1:86424471-86424490 | Msa0581080:intron | 30.0% | |
| CTGTTGGATCAAATTTGATA+AGG | + | chr4_1:86424750-86424769 | Msa0581080:intron | 30.0% | |
| AAATTTGATAAGGGAACTTG+TGG | + | chr4_1:86424760-86424779 | Msa0581080:intron | 30.0% | |
| TAATAAAGACACGAAATGCA+TGG | - | chr4_1:86425209-86425228 | None:intergenic | 30.0% | |
| !!! | ATGCTTAACCCTATTTTGAT+CGG | + | chr4_1:86425246-86425265 | Msa0581080:intron | 30.0% |
| GATTGTTACTAATGAAGAAG+TGG | + | chr4_1:86425293-86425312 | Msa0581080:exon | 30.0% | |
| TTGGCTGAGAAATACTTATT+TGG | + | chr4_1:86425363-86425382 | Msa0581080:three_prime_UTR | 30.0% | |
| TGGCTGAGAAATACTTATTT+GGG | + | chr4_1:86425364-86425383 | Msa0581080:three_prime_UTR | 30.0% | |
| !! | TGATGGACCTTGATTTTATA+TGG | + | chr4_1:86425468-86425487 | Msa0581080:three_prime_UTR | 30.0% |
| ! | AACTATTTGGTTCCTTGTTT+GGG | + | chr4_1:86425504-86425523 | Msa0581080:three_prime_UTR | 30.0% |
| !! | TTTGATTTGAGGGGTAAATG+GGG | - | chr4_1:86420932-86420951 | None:intergenic | 35.0% |
| !! | CTTTGATTTGAGGGGTAAAT+GGG | - | chr4_1:86420933-86420952 | None:intergenic | 35.0% |
| !! | TCGAGTTACCTTTGATTTGA+GGG | - | chr4_1:86420942-86420961 | None:intergenic | 35.0% |
| !! | ATCGAGTTACCTTTGATTTG+AGG | - | chr4_1:86420943-86420962 | None:intergenic | 35.0% |
| GTTCTTGAGTTTACCACAAT+TGG | + | chr4_1:86421081-86421100 | Msa0581080:intron | 35.0% | |
| AGGTAGATTTCCAACATACA+CGG | - | chr4_1:86421196-86421215 | None:intergenic | 35.0% | |
| TTCAGCATATCTCACTAGTT+AGG | + | chr4_1:86421302-86421321 | Msa0581080:intron | 35.0% | |
| TCAGCATATCTCACTAGTTA+GGG | + | chr4_1:86421303-86421322 | Msa0581080:intron | 35.0% | |
| ! | TATCTCACTAGTTAGGGTTT+TGG | + | chr4_1:86421309-86421328 | Msa0581080:intron | 35.0% |
| TAACTAGTGAAATCCACACT+TGG | - | chr4_1:86421428-86421447 | None:intergenic | 35.0% | |
| ! | AACCTTTTCTTGGTCTCTTT+TGG | + | chr4_1:86421508-86421527 | Msa0581080:intron | 35.0% |
| ! | ACCTTTTCTTGGTCTCTTTT+GGG | + | chr4_1:86421509-86421528 | Msa0581080:intron | 35.0% |
| CATAACTCACATTGACCTAA+AGG | + | chr4_1:86421675-86421694 | Msa0581080:CDS | 35.0% | |
| ! | CGTGATGGTTATGATTTTGA+TGG | + | chr4_1:86421873-86421892 | Msa0581080:CDS | 35.0% |
| AGATATAACCAACCCGTAAT+CGG | - | chr4_1:86421902-86421921 | None:intergenic | 35.0% | |
| ATTGACTAGAACTGCAAAAG+AGG | - | chr4_1:86422214-86422233 | None:intergenic | 35.0% | |
| !! | TCTTTTGCAGTTCTAGTCAA+TGG | + | chr4_1:86422213-86422232 | Msa0581080:intron | 35.0% |
| !! | CATCAATACTGACTCAATAG+TGG | + | chr4_1:86422319-86422338 | Msa0581080:intron | 35.0% |
| CCTTCCATCATGAAAAACTT+GGG | - | chr4_1:86422393-86422412 | None:intergenic | 35.0% | |
| !! | CCAAGTTTTTCATGATGGAA+GGG | + | chr4_1:86422391-86422410 | Msa0581080:CDS | 35.0% |
| !! | CAAGTTTTTCATGATGGAAG+GGG | + | chr4_1:86422392-86422411 | Msa0581080:CDS | 35.0% |
| ATATAATAGATGCCAGAAGG+GGG | - | chr4_1:86422523-86422542 | None:intergenic | 35.0% | |
| TAGTTCCGTCTATATTATGG+TGG | + | chr4_1:86422543-86422562 | Msa0581080:intron | 35.0% | |
| AGATGCCACCATAATATAGA+CGG | - | chr4_1:86422551-86422570 | None:intergenic | 35.0% | |
| AAATATCTCACTTCTCTGAC+AGG | - | chr4_1:86422577-86422596 | None:intergenic | 35.0% | |
| AAACCATATAAGTGGAGAAG+AGG | - | chr4_1:86422703-86422722 | None:intergenic | 35.0% | |
| !! | AAGACTTGGAAAAAGCATTC+CGG | - | chr4_1:86422863-86422882 | None:intergenic | 35.0% |
| TCAAACAGCAAATCTCCTAA+GGG | + | chr4_1:86423206-86423225 | Msa0581080:CDS | 35.0% | |
| TATCATACCCTGATAAAGAG+CGG | - | chr4_1:86423304-86423323 | None:intergenic | 35.0% | |
| ! | GTCTGTTACTATGTTTCTGA+TGG | + | chr4_1:86423348-86423367 | Msa0581080:intron | 35.0% |
| !! | TCTATTGTTTTGTCCTAGTG+AGG | + | chr4_1:86423630-86423649 | Msa0581080:intron | 35.0% |
| TTAACAGGTTAAAGGAGTTG+AGG | + | chr4_1:86423672-86423691 | Msa0581080:intron | 35.0% | |
| !!! | GCATTTTTTTTCCTTCGTCA+GGG | - | chr4_1:86423704-86423723 | None:intergenic | 35.0% |
| !!! | AGCATTTTTTTTCCTTCGTC+AGG | - | chr4_1:86423705-86423724 | None:intergenic | 35.0% |
| TATCAACATGAAACCACAGA+TGG | - | chr4_1:86423782-86423801 | None:intergenic | 35.0% | |
| AAGAAAACATTCCAACATGG+AGG | - | chr4_1:86424022-86424041 | None:intergenic | 35.0% | |
| GAAATTGGAAATTAGGGACT+TGG | + | chr4_1:86424109-86424128 | Msa0581080:CDS | 35.0% | |
| ! | TCCACAACAAATTGAGTTGT+AGG | - | chr4_1:86424153-86424172 | None:intergenic | 35.0% |
| !! | TACAACTCAATTTGTTGTGG+AGG | + | chr4_1:86424152-86424171 | Msa0581080:CDS | 35.0% |
| !! | GAGGTATGGTATTTTTCAGA+TGG | + | chr4_1:86424171-86424190 | Msa0581080:intron | 35.0% |
| ! | TTTTAGCATGTAAATGTCCG+TGG | + | chr4_1:86424233-86424252 | Msa0581080:intron | 35.0% |
| TTTAGCATGTAAATGTCCGT+GGG | + | chr4_1:86424234-86424253 | Msa0581080:intron | 35.0% | |
| ATTGGGAAACAAAGAGATCA+TGG | + | chr4_1:86424263-86424282 | Msa0581080:intron | 35.0% | |
| ! | CAAGAAATCCAGCTCTAATA+TGG | - | chr4_1:86424293-86424312 | None:intergenic | 35.0% |
| GCTGGATTTCTTGTGTTAAA+AGG | + | chr4_1:86424300-86424319 | Msa0581080:intron | 35.0% | |
| AAATTATCCCTAGTGCTCAT+TGG | - | chr4_1:86424349-86424368 | None:intergenic | 35.0% | |
| GGTGTCTTAATGTTTAACCT+TGG | + | chr4_1:86424470-86424489 | Msa0581080:intron | 35.0% | |
| GCCAAAGAACGAAATGTTAT+GGG | - | chr4_1:86424546-86424565 | None:intergenic | 35.0% | |
| AGCCAAAGAACGAAATGTTA+TGG | - | chr4_1:86424547-86424566 | None:intergenic | 35.0% | |
| !!! | TTCTTTGGCTTTTTCTCTGT+TGG | + | chr4_1:86424557-86424576 | Msa0581080:intron | 35.0% |
| !!! | TCTTTGGCTTTTTCTCTGTT+GGG | + | chr4_1:86424558-86424577 | Msa0581080:intron | 35.0% |
| AATCAACACATGTTCTGATG+TGG | + | chr4_1:86424930-86424949 | Msa0581080:intron | 35.0% | |
| ! | ACTCTAGTTTCCTTACAGAT+GGG | - | chr4_1:86424956-86424975 | None:intergenic | 35.0% |
| ! | AACTCTAGTTTCCTTACAGA+TGG | - | chr4_1:86424957-86424976 | None:intergenic | 35.0% |
| ! | TTCTTTGTGCAAGAAGTACA+TGG | + | chr4_1:86424976-86424995 | Msa0581080:intron | 35.0% |
| ! | TCTTTGTGCAAGAAGTACAT+GGG | + | chr4_1:86424977-86424996 | Msa0581080:intron | 35.0% |
| !!! | TGCTTAACCCTATTTTGATC+GGG | + | chr4_1:86425247-86425266 | Msa0581080:intron | 35.0% |
| ACTAATGAAGAAGTGGATGA+TGG | + | chr4_1:86425300-86425319 | Msa0581080:three_prime_UTR | 35.0% | |
| TCATAACTTAAGATGCCCAA+AGG | - | chr4_1:86425442-86425461 | None:intergenic | 35.0% | |
| TTTGGGCATCTTAAGTTATG+AGG | + | chr4_1:86425441-86425460 | Msa0581080:three_prime_UTR | 35.0% | |
| ! | GAACTATTTGGTTCCTTGTT+TGG | + | chr4_1:86425503-86425522 | Msa0581080:three_prime_UTR | 35.0% |
| ! | GAGAGCTTCGAAGGTTTTTA+GGG | - | chr4_1:86420892-86420911 | None:intergenic | 40.0% |
| !! | CCTTTGATTTGAGGGGTAAA+TGG | - | chr4_1:86420934-86420953 | None:intergenic | 40.0% |
| CCATTTACCCCTCAAATCAA+AGG | + | chr4_1:86420931-86420950 | Msa0581080:five_prime_UTR | 40.0% | |
| !! | CGAGTTACCTTTGATTTGAG+GGG | - | chr4_1:86420941-86420960 | None:intergenic | 40.0% |
| TCGTAGATGAAGAAATTCGC+AGG | - | chr4_1:86421027-86421046 | None:intergenic | 40.0% | |
| ! | TCTCGCTGAATTTTGCTTCA+CGG | + | chr4_1:86421059-86421078 | Msa0581080:intron | 40.0% |
| GTGTATGTTGGAAATCTACC+TGG | + | chr4_1:86421195-86421214 | Msa0581080:CDS | 40.0% | |
| ! | GGAACACTTGAACCTTTTCT+TGG | + | chr4_1:86421498-86421517 | Msa0581080:intron | 40.0% |
| TCCCAAAAGAGACCAAGAAA+AGG | - | chr4_1:86421513-86421532 | None:intergenic | 40.0% | |
| ! | AGGTGAGTTGGAAGTTACAT+AGG | + | chr4_1:86421731-86421750 | Msa0581080:intron | 40.0% |
| !!! | ATTTTGATGGGCACCGATTA+CGG | + | chr4_1:86421886-86421905 | Msa0581080:CDS | 40.0% |
| TTATCGTGTTGCCATTCTTC+TGG | - | chr4_1:86421969-86421988 | None:intergenic | 40.0% | |
| !! | CCCAAGTTTTTCATGATGGA+AGG | + | chr4_1:86422390-86422409 | Msa0581080:CDS | 40.0% |
| CCCTTCCATCATGAAAAACT+TGG | - | chr4_1:86422394-86422413 | None:intergenic | 40.0% | |
| !! | TTTTCATGATGGAAGGGGTA+CGG | + | chr4_1:86422397-86422416 | Msa0581080:intron | 40.0% |
| TGCTTATTTATTCCCCCTTC+TGG | + | chr4_1:86422508-86422527 | Msa0581080:intron | 40.0% | |
| !! | GATTGATTTGCAGGTACTAC+CGG | + | chr4_1:86422632-86422651 | Msa0581080:intron | 40.0% |
| !! | ATTGATTTGCAGGTACTACC+GGG | + | chr4_1:86422633-86422652 | Msa0581080:intron | 40.0% |
| GTTTGTGTAATCCACAATCC+CGG | - | chr4_1:86422654-86422673 | None:intergenic | 40.0% | |
| TCATACACGAACGTAAGACT+TGG | - | chr4_1:86422877-86422896 | None:intergenic | 40.0% | |
| TCATATTCCCTCACCTACAT+GGG | - | chr4_1:86422979-86422998 | None:intergenic | 40.0% | |
| ATCATATTCCCTCACCTACA+TGG | - | chr4_1:86422980-86422999 | None:intergenic | 40.0% | |
| !! | CTTCTTCCTCTAGAATGAGA+AGG | - | chr4_1:86423036-86423055 | None:intergenic | 40.0% |
| GTTGGAAATACCTTCTGCTA+TGG | - | chr4_1:86423107-86423126 | None:intergenic | 40.0% | |
| GTCAAACAGCAAATCTCCTA+AGG | + | chr4_1:86423205-86423224 | Msa0581080:CDS | 40.0% | |
| ATCATACCCTGATAAAGAGC+GGG | - | chr4_1:86423303-86423322 | None:intergenic | 40.0% | |
| CCTATTAATGTGCCTCCTAT+GGG | - | chr4_1:86423474-86423493 | None:intergenic | 40.0% | |
| ACCTATTAATGTGCCTCCTA+TGG | - | chr4_1:86423475-86423494 | None:intergenic | 40.0% | |
| AGGCACATTAATAGGTTGCA+TGG | + | chr4_1:86423479-86423498 | Msa0581080:intron | 40.0% | |
| GGCACATTAATAGGTTGCAT+GGG | + | chr4_1:86423480-86423499 | Msa0581080:intron | 40.0% | |
| GCACATTAATAGGTTGCATG+GGG | + | chr4_1:86423481-86423500 | Msa0581080:intron | 40.0% | |
| CAAAGACAATTGACCTCACT+AGG | - | chr4_1:86423646-86423665 | None:intergenic | 40.0% | |
| TCATACATGCATTGTTCGTC+CGG | + | chr4_1:86423980-86423999 | Msa0581080:intron | 40.0% | |
| ATTGGAAATTAGGGACTTGG+TGG | + | chr4_1:86424112-86424131 | Msa0581080:CDS | 40.0% | |
| ! | TTGGAAATTAGGGACTTGGT+GGG | + | chr4_1:86424113-86424132 | Msa0581080:CDS | 40.0% |
| !! | GCCTACAACTCAATTTGTTG+TGG | + | chr4_1:86424149-86424168 | Msa0581080:CDS | 40.0% |
| !! | CTCAATTTGTTGTGGAGGTA+TGG | + | chr4_1:86424157-86424176 | Msa0581080:intron | 40.0% |
| !! | ATTTTTCAGATGGGCGACTT+TGG | + | chr4_1:86424181-86424200 | Msa0581080:intron | 40.0% |
| ! | ATGGATTGCCATATTAGAGC+TGG | + | chr4_1:86424282-86424301 | Msa0581080:intron | 40.0% |
| TCAAGATTTGCCAAGCCAAT+AGG | + | chr4_1:86424386-86424405 | Msa0581080:intron | 40.0% | |
| CAAGATTTGCCAAGCCAATA+GGG | + | chr4_1:86424387-86424406 | Msa0581080:intron | 40.0% | |
| TATCCGGATTCTCTGGATTA+TGG | + | chr4_1:86424415-86424434 | Msa0581080:intron | 40.0% | |
| ATTCTCTGGATTATGGTGCA+GGG | + | chr4_1:86424422-86424441 | Msa0581080:intron | 40.0% | |
| ! | ATTTCTTTTCTCCAGTCTGC+TGG | + | chr4_1:86424449-86424468 | Msa0581080:intron | 40.0% |
| GCCCATAACATTTCGTTCTT+TGG | + | chr4_1:86424542-86424561 | Msa0581080:intron | 40.0% | |
| ATCAAGGCTGTTGGATCAAT+TGG | + | chr4_1:86424650-86424669 | Msa0581080:intron | 40.0% | |
| TCAAGGCTGTTGGATCAATT+GGG | + | chr4_1:86424651-86424670 | Msa0581080:intron | 40.0% | |
| ! | TGTGGAACTTTTGCAGATCA+CGG | + | chr4_1:86424800-86424819 | Msa0581080:intron | 40.0% |
| AATTCACTCACCAGAGGTAA+TGG | - | chr4_1:86424841-86424860 | None:intergenic | 40.0% | |
| AGAGAAAATTCACTCACCAG+AGG | - | chr4_1:86424847-86424866 | None:intergenic | 40.0% | |
| TTGCTTCTTGTGCCTTGTAA+TGG | + | chr4_1:86424888-86424907 | Msa0581080:intron | 40.0% | |
| ACACTAATGCAGCCATTACA+AGG | - | chr4_1:86424903-86424922 | None:intergenic | 40.0% | |
| ACCAAGTCCCGATCAAAATA+GGG | - | chr4_1:86425257-86425276 | None:intergenic | 40.0% | |
| ! | CGAGAGCTTCGAAGGTTTTT+AGG | - | chr4_1:86420893-86420912 | None:intergenic | 45.0% |
| AAAAACCTTCGAAGCTCTCG+CGG | + | chr4_1:86420893-86420912 | Msa0581080:five_prime_UTR | 45.0% | |
| TTTGAGGGGTAAATGGGGAT+CGG | - | chr4_1:86420927-86420946 | None:intergenic | 45.0% | |
| ATGCATTTGTCGAGGTGAGT+TGG | + | chr4_1:86421719-86421738 | Msa0581080:intron | 45.0% | |
| TGAAGATGTTCAAGATGCCG+AGG | + | chr4_1:86421836-86421855 | Msa0581080:CDS | 45.0% | |
| !!! | TTTTGATGGGCACCGATTAC+GGG | + | chr4_1:86421887-86421906 | Msa0581080:CDS | 45.0% |
| CTCTGAATATCGTGGTGTGT+AGG | + | chr4_1:86422123-86422142 | Msa0581080:intron | 45.0% | |
| AGGATCACATGCGAAAAGCT+GGG | + | chr4_1:86422354-86422373 | Msa0581080:intron | 45.0% | |
| ! | TTTCATGATGGAAGGGGTAC+GGG | + | chr4_1:86422398-86422417 | Msa0581080:intron | 45.0% |
| GAGCCTCTTCTCCACTTATA+TGG | + | chr4_1:86422697-86422716 | Msa0581080:CDS | 45.0% | |
| !! | GGAAAAAGCATTCCGGAACT+CGG | - | chr4_1:86422856-86422875 | None:intergenic | 45.0% |
| AGGTGAGGGAATATGATTCG+AGG | + | chr4_1:86422983-86423002 | Msa0581080:intron | 45.0% | |
| TGAGGGAATATGATTCGAGG+CGG | + | chr4_1:86422986-86423005 | Msa0581080:CDS | 45.0% | |
| AAATACCTTCTGCTATGGCC+CGG | - | chr4_1:86423102-86423121 | None:intergenic | 45.0% | |
| !! | CGTTGTGTGGTTTTACCCTT+AGG | - | chr4_1:86423224-86423243 | None:intergenic | 45.0% |
| TTTAGCTGGTGAACGTTGTG+TGG | - | chr4_1:86423237-86423256 | None:intergenic | 45.0% | |
| GATCTTGCAGGAGATTTAGC+TGG | - | chr4_1:86423251-86423270 | None:intergenic | 45.0% | |
| GAACGAGAAACTGATCTTGC+AGG | - | chr4_1:86423263-86423282 | None:intergenic | 45.0% | |
| TAAAGAGCGGGATCTAGATC+TGG | - | chr4_1:86423291-86423310 | None:intergenic | 45.0% | |
| TCTAGATCCCGCTCTTTATC+AGG | + | chr4_1:86423293-86423312 | Msa0581080:CDS | 45.0% | |
| CTAGATCCCGCTCTTTATCA+GGG | + | chr4_1:86423294-86423313 | Msa0581080:CDS | 45.0% | |
| TTCTTAGCCTCTTACGTGCA+GGG | + | chr4_1:86423434-86423453 | Msa0581080:intron | 45.0% | |
| !! | AAAAAGTGTCCTCCCATAGG+AGG | + | chr4_1:86423459-86423478 | Msa0581080:intron | 45.0% |
| ATTAATGTGCCTCCTATGGG+AGG | - | chr4_1:86423471-86423490 | None:intergenic | 45.0% | |
| ! | CCCATAGGAGGCACATTAAT+AGG | + | chr4_1:86423471-86423490 | Msa0581080:intron | 45.0% |
| TGAGGTTAAAACCCTGACGA+AGG | + | chr4_1:86423690-86423709 | Msa0581080:intron | 45.0% | |
| ATTGGAAACTTGCGGCATAC+TGG | + | chr4_1:86424087-86424106 | Msa0581080:CDS | 45.0% | |
| ACTTGCGGCATACTGGAAAT+TGG | + | chr4_1:86424094-86424113 | Msa0581080:CDS | 45.0% | |
| !! | ATTAGGGACTTGGTGGGATT+TGG | + | chr4_1:86424119-86424138 | Msa0581080:CDS | 45.0% |
| AATCTCCACCAATGAGCACT+AGG | + | chr4_1:86424338-86424357 | Msa0581080:intron | 45.0% | |
| ATCTCCACCAATGAGCACTA+GGG | + | chr4_1:86424339-86424358 | Msa0581080:intron | 45.0% | |
| TTATCCCTAGTGCTCATTGG+TGG | - | chr4_1:86424346-86424365 | None:intergenic | 45.0% | |
| GCACCATAATCCAGAGAATC+CGG | - | chr4_1:86424421-86424440 | None:intergenic | 45.0% | |
| GATTCTCTGGATTATGGTGC+AGG | + | chr4_1:86424421-86424440 | Msa0581080:intron | 45.0% | |
| TTCTCTGGATTATGGTGCAG+GGG | + | chr4_1:86424423-86424442 | Msa0581080:intron | 45.0% | |
| ACATTAAGACACCAGCAGAC+TGG | - | chr4_1:86424463-86424482 | None:intergenic | 45.0% | |
| TTGATGCCTCTCCAATGTCA+CGG | - | chr4_1:86424635-86424654 | None:intergenic | 45.0% | |
| TTGATGCCTCTCCAATGTCA+CGG | - | chr4_1:86424635-86424654 | None:intergenic | 45.0% | |
| ! | ACTTTTGCAGATCACGGTCA+AGG | + | chr4_1:86424806-86424825 | Msa0581080:intron | 45.0% |
| ! | TTGTGCAAGAAGTACATGGG+AGG | + | chr4_1:86424980-86424999 | Msa0581080:intron | 45.0% |
| ACCTGGACAAACTCTTGCTA+CGG | - | chr4_1:86425155-86425174 | None:intergenic | 45.0% | |
| !!! | ACCCTATTTTGATCGGGACT+TGG | + | chr4_1:86425253-86425272 | Msa0581080:intron | 45.0% |
| GACCAAGTCCCGATCAAAAT+AGG | - | chr4_1:86425258-86425277 | None:intergenic | 45.0% | |
| !! | ATTTTGATCGGGACTTGGTC+TGG | + | chr4_1:86425258-86425277 | Msa0581080:intron | 45.0% |
| TACTTGAGACCTGTGCCTTT+GGG | + | chr4_1:86425424-86425443 | Msa0581080:three_prime_UTR | 45.0% | |
| TTACCAAGTGTGCCCAAACA+AGG | - | chr4_1:86425519-86425538 | None:intergenic | 45.0% | |
| ! | GTTTGGGCACACTTGGTAAT+TGG | + | chr4_1:86425520-86425539 | Msa0581080:three_prime_UTR | 45.0% |
| !!! | AAATAACTTTTTTTTTATAT+AGG | - | chr4_1:86423756-86423775 | None:intergenic | 5.0% |
| TCGAGCAGAACCGTGTATGT+TGG | + | chr4_1:86421183-86421202 | Msa0581080:CDS | 50.0% | |
| TCTCTTTCACGGATATCGCC+AGG | - | chr4_1:86421216-86421235 | None:intergenic | 50.0% | |
| TTGACCTAAAGGTTCCGCCA+AGG | + | chr4_1:86421686-86421705 | Msa0581080:CDS | 50.0% | |
| TCGACAAATGCATAGCCAGG+GGG | - | chr4_1:86421712-86421731 | None:intergenic | 50.0% | |
| CTCGACAAATGCATAGCCAG+GGG | - | chr4_1:86421713-86421732 | None:intergenic | 50.0% | |
| CCTCGACAAATGCATAGCCA+GGG | - | chr4_1:86421714-86421733 | None:intergenic | 50.0% | |
| ACCTCGACAAATGCATAGCC+AGG | - | chr4_1:86421715-86421734 | None:intergenic | 50.0% | |
| TTATAGGTGGAGGCTGCACA+TGG | + | chr4_1:86422022-86422041 | Msa0581080:intron | 50.0% | |
| CGATACAGCAGTCACAGCAA+TGG | + | chr4_1:86422073-86422092 | Msa0581080:CDS | 50.0% | |
| TGCATCCTGGCAGGATCTTA+AGG | + | chr4_1:86422248-86422267 | Msa0581080:CDS | 50.0% | |
| TCTCACCTTAAGATCCTGCC+AGG | - | chr4_1:86422256-86422275 | None:intergenic | 50.0% | |
| CAGGATCACATGCGAAAAGC+TGG | + | chr4_1:86422353-86422372 | Msa0581080:intron | 50.0% | |
| GGATCACATGCGAAAAGCTG+GGG | + | chr4_1:86422355-86422374 | Msa0581080:intron | 50.0% | |
| ! | AGCTTGATGACTCCGAGTTC+CGG | + | chr4_1:86422841-86422860 | Msa0581080:CDS | 50.0% |
| CACCTACATGGGCAAACAGA+GGG | - | chr4_1:86422968-86422987 | None:intergenic | 50.0% | |
| TCACCTACATGGGCAAACAG+AGG | - | chr4_1:86422969-86422988 | None:intergenic | 50.0% | |
| TCTGTTTGCCCATGTAGGTG+AGG | + | chr4_1:86422968-86422987 | Msa0581080:intron | 50.0% | |
| CTGTTTGCCCATGTAGGTGA+GGG | + | chr4_1:86422969-86422988 | Msa0581080:intron | 50.0% | |
| GAGGGAATATGATTCGAGGC+GGG | + | chr4_1:86422987-86423006 | Msa0581080:CDS | 50.0% | |
| ! | ACTCTAGAAGTCCTGGTCGT+GGG | + | chr4_1:86423010-86423029 | Msa0581080:CDS | 50.0% |
| CTTCTTAGCCTCTTACGTGC+AGG | + | chr4_1:86423433-86423452 | Msa0581080:intron | 50.0% | |
| TCTTAGCCTCTTACGTGCAG+GGG | + | chr4_1:86423435-86423454 | Msa0581080:intron | 50.0% | |
| ! | TTTTTCCCCCTGCACGTAAG+AGG | - | chr4_1:86423444-86423463 | None:intergenic | 50.0% |
| !! | GGGAAAAAGTGTCCTCCCAT+AGG | + | chr4_1:86423456-86423475 | Msa0581080:intron | 50.0% |
| ATGCATTGTTCGTCCGGTAC+CGG | + | chr4_1:86423986-86424005 | Msa0581080:intron | 50.0% | |
| ! | ACATGGAGGCATGTTTCTCC+CGG | - | chr4_1:86424008-86424027 | None:intergenic | 50.0% |
| GGAGAAACATGCCTCCATGT+TGG | + | chr4_1:86424008-86424027 | Msa0581080:intron | 50.0% | |
| AATGTCCGTGGGTGCTAGAT+TGG | + | chr4_1:86424245-86424264 | Msa0581080:intron | 50.0% | |
| ATGTCCGTGGGTGCTAGATT+GGG | + | chr4_1:86424246-86424265 | Msa0581080:intron | 50.0% | |
| GTTTCCCAATCTAGCACCCA+CGG | - | chr4_1:86424253-86424272 | None:intergenic | 50.0% | |
| ! | GATAGTGCACCCTATTGGCT+TGG | - | chr4_1:86424399-86424418 | None:intergenic | 50.0% |
| AGCCAATAGGGTGCACTATC+CGG | + | chr4_1:86424399-86424418 | Msa0581080:intron | 50.0% | |
| ATCCGGATAGTGCACCCTAT+TGG | - | chr4_1:86424404-86424423 | None:intergenic | 50.0% | |
| !! | GTGACATTGGAGAGGCATCA+AGG | + | chr4_1:86424634-86424653 | Msa0581080:intron | 50.0% |
| !! | GTGACATTGGAGAGGCATCA+AGG | + | chr4_1:86424634-86424653 | Msa0581080:intron | 50.0% |
| GTCTAGGTCTCCATTACCTC+TGG | + | chr4_1:86424828-86424847 | Msa0581080:CDS | 50.0% | |
| TCTGATGTGGCCCATCTGTA+AGG | + | chr4_1:86424943-86424962 | Msa0581080:intron | 50.0% | |
| !! | TGCTAGCACTGCGCTTTTTG+GGG | - | chr4_1:86425110-86425129 | None:intergenic | 50.0% |
| !! | CTGCTAGCACTGCGCTTTTT+GGG | - | chr4_1:86425111-86425130 | None:intergenic | 50.0% |
| AAGGACTCGAGATAGAGACC+TGG | - | chr4_1:86425172-86425191 | None:intergenic | 50.0% | |
| ! | GAAGTGGATGATGGTCAGTG+TGG | + | chr4_1:86425309-86425328 | Msa0581080:three_prime_UTR | 50.0% |
| GTACTTGAGACCTGTGCCTT+TGG | + | chr4_1:86425423-86425442 | Msa0581080:three_prime_UTR | 50.0% | |
| ! | CTTAAGATGCCCAAAGGCAC+AGG | - | chr4_1:86425436-86425455 | None:intergenic | 50.0% |
| ! | GTTCCTTGTTTGGGCACACT+TGG | + | chr4_1:86425513-86425532 | Msa0581080:three_prime_UTR | 50.0% |
| CCCTGGCTATGCATTTGTCG+AGG | + | chr4_1:86421711-86421730 | Msa0581080:CDS | 55.0% | |
| GATGCCGAGGATGCAATTCG+CGG | + | chr4_1:86421849-86421868 | Msa0581080:CDS | 55.0% | |
| ACGACCGCGAATTGCATCCT+CGG | - | chr4_1:86421856-86421875 | None:intergenic | 55.0% | |
| GATGCAATTCGCGGTCGTGA+TGG | + | chr4_1:86421858-86421877 | Msa0581080:CDS | 55.0% | |
| ACAGCAGTCACAGCAATGGC+CGG | + | chr4_1:86422077-86422096 | Msa0581080:CDS | 55.0% | |
| ! | TCCAGGCGCTCTGAATATCG+TGG | + | chr4_1:86422115-86422134 | Msa0581080:CDS | 55.0% |
| ! | ACCACGATATTCAGAGCGCC+TGG | - | chr4_1:86422119-86422138 | None:intergenic | 55.0% |
| TCCTGCCAGGATGCAGAAGA+GGG | - | chr4_1:86422243-86422262 | None:intergenic | 55.0% | |
| ATCCTGCCAGGATGCAGAAG+AGG | - | chr4_1:86422244-86422263 | None:intergenic | 55.0% | |
| ! | TGGAAGGGGTACGGGACATT+CGG | + | chr4_1:86422406-86422425 | Msa0581080:intron | 55.0% |
| TGCAGGTACTACCGGGATTG+TGG | + | chr4_1:86422640-86422659 | Msa0581080:intron | 55.0% | |
| CTCCCTCTGTTTGCCCATGT+AGG | + | chr4_1:86422963-86422982 | Msa0581080:intron | 55.0% | |
| ! | GACTCTAGAAGTCCTGGTCG+TGG | + | chr4_1:86423009-86423028 | Msa0581080:CDS | 55.0% |
| CGTGGGCCTTCTCATTCTAG+AGG | + | chr4_1:86423027-86423046 | Msa0581080:CDS | 55.0% | |
| CTTAGCCTCTTACGTGCAGG+GGG | + | chr4_1:86423436-86423455 | Msa0581080:intron | 55.0% | |
| TGCATTGTTCGTCCGGTACC+GGG | + | chr4_1:86423987-86424006 | Msa0581080:intron | 55.0% | |
| AGGCATGTTTCTCCCGGTAC+CGG | - | chr4_1:86424002-86424021 | None:intergenic | 55.0% | |
| GGTGCACTATCCGGATTCTC+TGG | + | chr4_1:86424408-86424427 | Msa0581080:intron | 55.0% | |
| ACGGTTCGCAAACCCAAGAG+AGG | - | chr4_1:86424616-86424635 | None:intergenic | 55.0% | |
| GGGTTTGCGAACCGTGACAT+TGG | + | chr4_1:86424621-86424640 | Msa0581080:intron | 55.0% | |
| TGCGAACCGTGACATTGGAG+AGG | + | chr4_1:86424626-86424645 | Msa0581080:intron | 55.0% | |
| !! | TGGAGAGGCATCAAGGCTGT+TGG | + | chr4_1:86424641-86424660 | Msa0581080:intron | 55.0% |
| ACGGTTCGCAAACCCAAGAG+AGG | - | chr4_1:86424616-86424635 | None:intergenic | 55.0% | |
| GGGTTTGCGAACCGTGACAT+TGG | + | chr4_1:86424621-86424640 | Msa0581080:intron | 55.0% | |
| TGCGAACCGTGACATTGGAG+AGG | + | chr4_1:86424626-86424645 | Msa0581080:intron | 55.0% | |
| !! | TGGAGAGGCATCAAGGCTGT+TGG | + | chr4_1:86424641-86424660 | Msa0581080:intron | 55.0% |
| GCAGATCACGGTCAAGGTCT+AGG | + | chr4_1:86424812-86424831 | Msa0581080:intron | 55.0% | |
| ! | CCTGCTAGCACTGCGCTTTT+TGG | - | chr4_1:86425112-86425131 | None:intergenic | 55.0% |
| ! | CCAAAAAGCGCAGTGCTAGC+AGG | + | chr4_1:86425109-86425128 | Msa0581080:CDS | 55.0% |
| GTGCTAGCAGGAGTCCAAGT+AGG | + | chr4_1:86425121-86425140 | Msa0581080:CDS | 55.0% | |
| GCCGTAGCAAGAGTTTGTCC+AGG | + | chr4_1:86425151-86425170 | Msa0581080:CDS | 55.0% | |
| TGTTGCCGCGAGAGCTTCGA+AGG | - | chr4_1:86420901-86420920 | None:intergenic | 60.0% | |
| GAGGGGTAAATGGGGATCGG+TGG | - | chr4_1:86420924-86420943 | None:intergenic | 60.0% | |
| AATGCATAGCCAGGGGGCCT+TGG | - | chr4_1:86421706-86421725 | None:intergenic | 60.0% | |
| !! | GATGGGCACCGATTACGGGT+TGG | + | chr4_1:86421891-86421910 | Msa0581080:intron | 60.0% |
| TAGGTGGAGGCTGCACATGG+CGG | + | chr4_1:86422025-86422044 | Msa0581080:intron | 60.0% | |
| CAGCAGTCACAGCAATGGCC+GGG | + | chr4_1:86422078-86422097 | Msa0581080:CDS | 60.0% | |
| AGCAGTCACAGCAATGGCCG+GGG | + | chr4_1:86422079-86422098 | Msa0581080:CDS | 60.0% | |
| GACTGCCCTCTTCTGCATCC+TGG | + | chr4_1:86422235-86422254 | Msa0581080:CDS | 60.0% | |
| ! | AGGCGGGACTCTAGAAGTCC+TGG | + | chr4_1:86423003-86423022 | Msa0581080:CDS | 60.0% |
| GAATGAGAAGGCCCACGACC+AGG | - | chr4_1:86423024-86423043 | None:intergenic | 60.0% | |
| TATGGCCCGGACTGTCGCTA+CGG | - | chr4_1:86423089-86423108 | None:intergenic | 60.0% | |
| ACAGTCCGGGCCATAGCAGA+AGG | + | chr4_1:86423094-86423113 | Msa0581080:CDS | 60.0% | |
| GCAGGAGTCCAAGTAGGAGC+AGG | + | chr4_1:86425127-86425146 | Msa0581080:CDS | 60.0% | |
| CTACGGCTCCTGCTCCTACT+TGG | - | chr4_1:86425138-86425157 | None:intergenic | 60.0% | |
| ! | TGATCGGGACTTGGTCTGGC+AGG | + | chr4_1:86425262-86425281 | Msa0581080:intron | 60.0% |
| GGGGCCTTGGCGGAACCTTT+AGG | - | chr4_1:86421693-86421712 | None:intergenic | 65.0% | |
| AGTCACAGCAATGGCCGGGG+TGG | + | chr4_1:86422082-86422101 | Msa0581080:CDS | 65.0% | |
| GCCCTCTTCTGCATCCTGGC+AGG | + | chr4_1:86422239-86422258 | Msa0581080:CDS | 65.0% | |
| TGCGGCTGCGACTACGACTG+CGG | - | chr4_1:86423065-86423084 | None:intergenic | 65.0% | |
| AAGGTTCCGCCAAGGCCCCC+TGG | + | chr4_1:86421694-86421713 | Msa0581080:CDS | 70.0% | |
| GCATAGCCAGGGGGCCTTGG+CGG | - | chr4_1:86421703-86421722 | None:intergenic | 70.0% | |
| GAGGCTGCACATGGCGGTCG+TGG | + | chr4_1:86422031-86422050 | Msa0581080:CDS | 70.0% | |
| AGCAATGGCCGGGGTGGACG+CGG | + | chr4_1:86422088-86422107 | Msa0581080:CDS | 70.0% | |
| TGGATACCCCGCGTCCACCC+CGG | - | chr4_1:86422099-86422118 | None:intergenic | 70.0% | |
| CCGGACTGTCGCTACGGCTG+CGG | - | chr4_1:86423083-86423102 | None:intergenic | 70.0% | |
| CCGCAGCCGTAGCGACAGTC+CGG | + | chr4_1:86423080-86423099 | Msa0581080:CDS | 70.0% | |
| CGCAGCCGTAGCGACAGTCC+GGG | + | chr4_1:86423081-86423100 | Msa0581080:CDS | 70.0% | |
| GCAATGGCCGGGGTGGACGC+GGG | + | chr4_1:86422089-86422108 | Msa0581080:CDS | 75.0% | |
| CAATGGCCGGGGTGGACGCG+GGG | + | chr4_1:86422090-86422109 | Msa0581080:CDS | 75.0% | |
| ! | GGGGTGGACGCGGGGTATCC+AGG | + | chr4_1:86422098-86422117 | Msa0581080:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86420869 | 86425596 | 86420869 | ID=Msa0581080;Name=Msa0581080 |
| chr4_1 | mRNA | 86420869 | 86425596 | 86420869 | ID=Msa0581080-mRNA-1;Parent=Msa0581080;Name=Msa0581080-mRNA-1;_AED=0.27;_eAED=0.27;_QI=93|0.85|0.86|1|0.64|0.73|15|302|343 |
| chr4_1 | exon | 86420869 | 86420952 | 86420869 | ID=Msa0581080-mRNA-1:exon:31936;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86421162 | 86421257 | 86421162 | ID=Msa0581080-mRNA-1:exon:31937;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86421667 | 86421732 | 86421667 | ID=Msa0581080-mRNA-1:exon:31938;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86421834 | 86421908 | 86421834 | ID=Msa0581080-mRNA-1:exon:31939;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86422028 | 86422136 | 86422028 | ID=Msa0581080-mRNA-1:exon:31940;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86422223 | 86422269 | 86422223 | ID=Msa0581080-mRNA-1:exon:31941;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86422356 | 86422413 | 86422356 | ID=Msa0581080-mRNA-1:exon:31942;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86422645 | 86422718 | 86422645 | ID=Msa0581080-mRNA-1:exon:31943;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86422834 | 86422890 | 86422834 | ID=Msa0581080-mRNA-1:exon:31944;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86422985 | 86423115 | 86422985 | ID=Msa0581080-mRNA-1:exon:31945;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86423197 | 86423315 | 86423197 | ID=Msa0581080-mRNA-1:exon:31946;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86424087 | 86424173 | 86424087 | ID=Msa0581080-mRNA-1:exon:31947;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86424816 | 86424849 | 86424816 | ID=Msa0581080-mRNA-1:exon:31948;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86425096 | 86425172 | 86425096 | ID=Msa0581080-mRNA-1:exon:31949;Parent=Msa0581080-mRNA-1 |
| chr4_1 | exon | 86425284 | 86425596 | 86425284 | ID=Msa0581080-mRNA-1:exon:31950;Parent=Msa0581080-mRNA-1 |
| chr4_1 | five_prime_UTR | 86420869 | 86420952 | 86420869 | ID=Msa0581080-mRNA-1:five_prime_utr;Parent=Msa0581080-mRNA-1 |
| chr4_1 | five_prime_UTR | 86421162 | 86421170 | 86421162 | ID=Msa0581080-mRNA-1:five_prime_utr;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86421171 | 86421257 | 86421171 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86421667 | 86421732 | 86421667 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86421834 | 86421908 | 86421834 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86422028 | 86422136 | 86422028 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86422223 | 86422269 | 86422223 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86422356 | 86422413 | 86422356 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86422645 | 86422718 | 86422645 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86422834 | 86422890 | 86422834 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86422985 | 86423115 | 86422985 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86423197 | 86423315 | 86423197 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86424087 | 86424173 | 86424087 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86424816 | 86424849 | 86424816 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86425096 | 86425172 | 86425096 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | CDS | 86425284 | 86425294 | 86425284 | ID=Msa0581080-mRNA-1:cds;Parent=Msa0581080-mRNA-1 |
| chr4_1 | three_prime_UTR | 86425295 | 86425596 | 86425295 | ID=Msa0581080-mRNA-1:three_prime_utr;Parent=Msa0581080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
