AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880030 MtrunA17_Chr7g0265751 97.203 143 4 0 1 143 185 327 5.80e-93 271
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCCCTTCTTACTCATTT+TGG 0.093560 6_1:-26104539 Msa0880030:five_prime_UTR
GGATATTTCATTTCTGTATT+TGG 0.102491 6_1:-26103291 Msa0880030:three_prime_UTR
TAAGAGATGTGAAACAATTT+TGG 0.157960 6_1:-26103185 Msa0880030:three_prime_UTR
CCAAACCTTACCCCACTAAA+TGG 0.175066 6_1:+26104708 None:intergenic
GATTTGGCTGTCATTCTTCT+AGG 0.216635 6_1:-26104115 Msa0880030:five_prime_UTR
ACTAAATGGGGTTGGCTAAA+TGG 0.240030 6_1:+26104722 None:intergenic
TATGAGGGGCGTTCGTATTC+TGG 0.248763 6_1:-26103782 Msa0880030:CDS
CATTCAGAAGATCCACAAAA+TGG 0.251545 6_1:+26103065 None:intergenic
TAATGAGTTGGATCGAAATT+TGG 0.261075 6_1:-26104776 None:intergenic
GATTTGAGGAAGCGATTATT+TGG 0.276417 6_1:-26103872 Msa0880030:CDS
CAAATATTAATGATTATTTC+AGG 0.292367 6_1:-26104246 Msa0880030:five_prime_UTR
ACTAAAGGCAATATTCATAT+TGG 0.295430 6_1:-26104645 Msa0880030:five_prime_UTR
TGCCGAGGACTACGGCTTCT+TGG 0.303158 6_1:+26103704 None:intergenic
TCGTATTCTGGCCGTGGTTC+TGG 0.312884 6_1:-26103770 Msa0880030:CDS
TTACTTGCAGAAATTATTAC+AGG 0.313162 6_1:+26103429 None:intergenic
AATAATTTCTGCAAGTAATC+TGG 0.317375 6_1:-26103424 Msa0880030:three_prime_UTR
GAGAAGGAAGTTGGAGATTC+TGG 0.338699 6_1:-26103569 Msa0880030:CDS
TTACAGGGTCTTCTCACTTT+GGG 0.346064 6_1:+26103445 None:intergenic
CTTTCTCTTTCTCCTCTGAT+AGG 0.355688 6_1:+26103632 None:intergenic
TTGCTACTGACATTGTGATT+TGG 0.360779 6_1:-26104131 Msa0880030:five_prime_UTR
CTACCGAGTTCAGTATTGTT+TGG 0.362060 6_1:-26104309 Msa0880030:five_prime_UTR
TGGTACATGATAGAACATTA+TGG 0.365594 6_1:-26104756 Msa0880030:five_prime_UTR
CTTTCTCCTCTGATAGGATT+CGG 0.367164 6_1:+26103638 None:intergenic
CAAACCTTACCCCACTAAAT+GGG 0.369454 6_1:+26104709 None:intergenic
TGGTTCTGGTAGAAGGGATT+TGG 0.369893 6_1:-26103756 Msa0880030:CDS
CCCTCATAGTTACGATTTCT+CGG 0.370767 6_1:+26103797 None:intergenic
CTGGCCGTGGTTCTGGTAGA+AGG 0.372740 6_1:-26103763 Msa0880030:CDS
ATTGAGATATTCAATTGGTT+TGG 0.377766 6_1:-26104601 Msa0880030:five_prime_UTR
CCATTTAGTGGGGTAAGGTT+TGG 0.399040 6_1:-26104708 Msa0880030:five_prime_UTR
TGAATCCTTTGTGTAACTAA+AGG 0.400480 6_1:-26104660 Msa0880030:five_prime_UTR
GGCTTCTTGGCCTTCTACCA+TGG 0.400878 6_1:+26103717 None:intergenic
CTAGAATAGAACAATGGAAC+AGG 0.401571 6_1:-26103592 Msa0880030:CDS
TGTTGACTTCTCTCCTGTTA+CGG 0.406173 6_1:-26104080 Msa0880030:five_prime_UTR
CAATAAAAGTGGGTACAATA+AGG 0.407335 6_1:+26104559 None:intergenic
GCTTCTCGAAAATCCGTAAC+AGG 0.408045 6_1:+26104067 None:intergenic
ATTACAGGGTCTTCTCACTT+TGG 0.418323 6_1:+26103444 None:intergenic
AAAACTACAGCCAACTCAAT+AGG 0.421667 6_1:+26103386 None:intergenic
CTCATGGCTCCCATGGTAGA+AGG 0.441236 6_1:-26103727 Msa0880030:CDS
AATCACTATAAAATAGTTAA+CGG 0.444979 6_1:-26103117 Msa0880030:three_prime_UTR
CCTTTGATTTCAGAGATTTG+AGG 0.452267 6_1:-26103886 Msa0880030:intron
GATTATTTGGAAGAAGTAGT+AGG 0.454782 6_1:-26103859 Msa0880030:CDS
CCTCATAGTTACGATTTCTC+GGG 0.458427 6_1:+26103798 None:intergenic
TGCATCTAAAGAAGATTAGC+AGG 0.461797 6_1:-26103988 Msa0880030:intron
AGATTACCTGGGTGAAATAG+AGG 0.463565 6_1:-26103240 Msa0880030:three_prime_UTR
CAACCCCATTTAGTGGGGTA+AGG 0.467683 6_1:-26104713 Msa0880030:five_prime_UTR
ATTTAGCCAACCCCATTTAG+TGG 0.472543 6_1:-26104720 Msa0880030:five_prime_UTR
CCCGAGAAATCGTAACTATG+AGG 0.480351 6_1:-26103798 Msa0880030:CDS
AAAGAGAAAGTAGTGTAGAA+AGG 0.483749 6_1:-26103619 Msa0880030:CDS
TGGAACAGGGAGAAGGAAGT+TGG 0.485919 6_1:-26103578 Msa0880030:CDS
TTTAGATTGAGATATTCAAT+TGG 0.489806 6_1:-26104606 Msa0880030:five_prime_UTR
ATTCAGAAGATCCACAAAAT+GGG 0.489931 6_1:+26103066 None:intergenic
GGAGAGAAGTCAACAATGAT+TGG 0.494146 6_1:+26104088 None:intergenic
GGACTCCTGTCTCTTCCCAT+TGG 0.497688 6_1:+26103659 None:intergenic
AAACTCTGTTGGAGATTACC+TGG 0.498335 6_1:-26103252 Msa0880030:three_prime_UTR
TTGGACAGTAGCAGATGTAC+TGG 0.503163 6_1:+26104435 None:intergenic
CTCATAGTTACGATTTCTCG+GGG 0.504601 6_1:+26103799 None:intergenic
CTGGTAGAAGGGATTTGGAC+AGG 0.507028 6_1:-26103751 Msa0880030:CDS
GGCCAAGAAGCCGTAGTCCT+CGG 0.507965 6_1:-26103706 Msa0880030:CDS
GCTTCTTGGCCTTCTACCAT+GGG 0.511138 6_1:+26103718 None:intergenic
GGGCGTTCGTATTCTGGCCG+TGG 0.515780 6_1:-26103776 Msa0880030:CDS
AGTCCTTGAGCTTTATCTGA+TGG 0.516471 6_1:-26104515 Msa0880030:five_prime_UTR
TTGGAAGAAGTAGTAGGCGT+TGG 0.517691 6_1:-26103853 Msa0880030:CDS
AAATTACAATTGTGGGTACC+AGG 0.519183 6_1:+26104357 None:intergenic
GACAGGTCTCATGGCTCCCA+TGG 0.524520 6_1:-26103734 Msa0880030:CDS
TGCAAACAACACAAGCAGTA+AGG 0.525141 6_1:+26104406 None:intergenic
TTAGTTTGCACCTATTGAGT+TGG 0.528104 6_1:-26103396 Msa0880030:three_prime_UTR
GACTCCCAAAATGAGTAAGA+AGG 0.530412 6_1:+26104534 None:intergenic
AGGCGGAGTAGAAGTCCAAT+GGG 0.531064 6_1:-26103674 Msa0880030:CDS
GAAGTCCAATGGGAAGAGAC+AGG 0.531891 6_1:-26103664 Msa0880030:CDS
TTTAGCCAACCCCATTTAGT+GGG 0.537432 6_1:-26104719 Msa0880030:five_prime_UTR
ACCGTAGTGGAAGCAGAAGC+CGG 0.541010 6_1:-26103826 Msa0880030:CDS
TGTTCGATGGTAAACTCTGT+TGG 0.545340 6_1:-26103263 Msa0880030:three_prime_UTR
TCCGGCTTCTGCTTCCACTA+CGG 0.545385 6_1:+26103825 None:intergenic
TGGCCGTGGTTCTGGTAGAA+GGG 0.546507 6_1:-26103762 Msa0880030:CDS
CCGAGAAATCGTAACTATGA+GGG 0.550258 6_1:-26103797 Msa0880030:CDS
AATAGTTAACGGAAGAAGTG+AGG 0.560146 6_1:-26103106 Msa0880030:three_prime_UTR
AGGGATTTGGACAGGTCTCA+TGG 0.560557 6_1:-26103743 Msa0880030:CDS
AACAATGATTATGAAGAGGC+GGG 0.563713 6_1:-26103527 Msa0880030:CDS
TACAATTGTGGGTACCAGGA+AGG 0.565940 6_1:+26104361 None:intergenic
TTCCTCTATGCCGAGGACTA+CGG 0.567765 6_1:+26103696 None:intergenic
CAGCCAAACAATACTGAACT+CGG 0.572270 6_1:+26104306 None:intergenic
GTAAGAAGGGCCAATAAAAG+TGG 0.574098 6_1:+26104548 None:intergenic
AAGGCGGAGTAGAAGTCCAA+TGG 0.574467 6_1:-26103675 Msa0880030:CDS
AGTATTGTTTGGCTGAGATG+AGG 0.581303 6_1:-26104298 Msa0880030:five_prime_UTR
AGCCGTAGTCCTCGGCATAG+AGG 0.581691 6_1:-26103698 Msa0880030:CDS
ACTCCCAAAATGAGTAAGAA+GGG 0.582098 6_1:+26104535 None:intergenic
AAGCAATGATAGACAATGCA+CGG 0.593978 6_1:+26104169 None:intergenic
AGAACAATGGAACAGGGAGA+AGG 0.596602 6_1:-26103585 Msa0880030:CDS
ATTCCATCAGATAAAGCTCA+AGG 0.600413 6_1:+26104512 None:intergenic
CTTACCCCACTAAATGGGGT+TGG 0.601730 6_1:+26104714 None:intergenic
ATTTGCAACAGAACAAAGGA+AGG 0.601935 6_1:+26103137 None:intergenic
GTAGTCCTCGGCATAGAGGA+AGG 0.603594 6_1:-26103694 Msa0880030:CDS
TAACAATGATTATGAAGAGG+CGG 0.605105 6_1:-26103528 Msa0880030:CDS
AGAAGTCAACAATGATTGGT+CGG 0.606403 6_1:+26104092 None:intergenic
CATAGTTACGATTTCTCGGG+GGG 0.607441 6_1:+26103801 None:intergenic
AGTGATTTGCAACAGAACAA+AGG 0.611402 6_1:+26103133 None:intergenic
GATTACCTGGGTGAAATAGA+GGG 0.614308 6_1:-26103239 Msa0880030:three_prime_UTR
AAACCTTACCCCACTAAATG+GGG 0.617213 6_1:+26104710 None:intergenic
CTCCGCCTTCCTCTATGCCG+AGG 0.622022 6_1:+26103689 None:intergenic
GTATTTGGATGAATGTTCGA+TGG 0.623654 6_1:-26103276 Msa0880030:three_prime_UTR
AGTTAACGGAAGAAGTGAGG+AGG 0.623894 6_1:-26103103 Msa0880030:three_prime_UTR
ACCTTGTGCTCTGTCACACA+TGG 0.623990 6_1:-26104474 Msa0880030:five_prime_UTR
GAGTAACAATGATTATGAAG+AGG 0.626539 6_1:-26103531 Msa0880030:CDS
TAAGAAGGGCCAATAAAAGT+GGG 0.628297 6_1:+26104549 None:intergenic
TATTAATGATTATTTCAGGT+AGG 0.630381 6_1:-26104242 Msa0880030:five_prime_UTR
AGTTGGAGATTCTGGTAACA+AGG 0.630652 6_1:-26103561 Msa0880030:CDS
AGGAGTCCGAATCCTATCAG+AGG 0.630679 6_1:-26103644 Msa0880030:CDS
ACAAGCAGTAAGGACAACAT+TGG 0.631812 6_1:+26104416 None:intergenic
AACTCTGTTGGAGATTACCT+GGG 0.633510 6_1:-26103251 Msa0880030:three_prime_UTR
CGAGAAATCGTAACTATGAG+GGG 0.636005 6_1:-26103796 Msa0880030:CDS
GAAGAGAATGTATGCAATCG+AGG 0.636366 6_1:-26104028 Msa0880030:five_prime_UTR
TACTTGCAGAAATTATTACA+GGG 0.643592 6_1:+26103430 None:intergenic
TATTGCCTTTAGTTACACAA+AGG 0.644603 6_1:+26104655 None:intergenic
ACCATGTGTGACAGAGCACA+AGG 0.649164 6_1:+26104473 None:intergenic
TCATAGTTACGATTTCTCGG+GGG 0.654148 6_1:+26103800 None:intergenic
GGAGAGCTAGAATAGAACAA+TGG 0.656515 6_1:-26103598 Msa0880030:CDS
TTAGCCAACCCCATTTAGTG+GGG 0.664219 6_1:-26104718 Msa0880030:five_prime_UTR
CGGTTCCCTCTATTTCACCC+AGG 0.673223 6_1:+26103234 None:intergenic
GCATAGTTGAAATTCAAACA+CGG 0.675622 6_1:+26103214 None:intergenic
AGGCGTTGGAATGACCGTAG+TGG 0.684717 6_1:-26103839 Msa0880030:CDS
TAGAATAGAACAATGGAACA+GGG 0.687714 6_1:-26103591 Msa0880030:CDS
AATCCCTTCTACCAGAACCA+CGG 0.694334 6_1:+26103759 None:intergenic
AATGTCAGTAGCAATGAGCG+AGG 0.711012 6_1:+26104140 None:intergenic
GAGAATGTATGCAATCGAGG+TGG 0.723621 6_1:-26104025 Msa0880030:five_prime_UTR
GTCCTCGGCATAGAGGAAGG+CGG 0.728288 6_1:-26103691 Msa0880030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAATTACAATTGT+GGG + chr6_1:26103489-26103508 None:intergenic 15.0%
!! CAAATATTAATGATTATTTC+AGG - chr6_1:26103590-26103609 Msa0880030:CDS 15.0%
!! AATCACTATAAAATAGTTAA+CGG - chr6_1:26104719-26104738 Msa0880030:five_prime_UTR 15.0%
!! AAAAAGAAAATTACAATTGT+GGG + chr6_1:26103489-26103508 None:intergenic 15.0%
!! CAAATATTAATGATTATTTC+AGG - chr6_1:26103590-26103609 Msa0880030:CDS 15.0%
!! AATCACTATAAAATAGTTAA+CGG - chr6_1:26104719-26104738 Msa0880030:five_prime_UTR 15.0%
!! TTTAGATTGAGATATTCAAT+TGG - chr6_1:26103230-26103249 Msa0880030:three_prime_UTR 20.0%
!!! TTTTTTTTTTTTTTCCTTCC+TGG - chr6_1:26103461-26103480 Msa0880030:three_prime_UTR 20.0%
!! GAAAAAGAAAATTACAATTG+TGG + chr6_1:26103490-26103509 None:intergenic 20.0%
!!! TATTAATGATTATTTCAGGT+AGG - chr6_1:26103594-26103613 Msa0880030:CDS 20.0%
!!! AAAAATTGAAAAGCATGAAT+AGG + chr6_1:26103891-26103910 None:intergenic 20.0%
!! TTTAGATTGAGATATTCAAT+TGG - chr6_1:26103230-26103249 Msa0880030:three_prime_UTR 20.0%
!!! TTTTTTTTTTTTTTCCTTCC+TGG - chr6_1:26103461-26103480 Msa0880030:three_prime_UTR 20.0%
!! GAAAAAGAAAATTACAATTG+TGG + chr6_1:26103490-26103509 None:intergenic 20.0%
!!! TATTAATGATTATTTCAGGT+AGG - chr6_1:26103594-26103613 Msa0880030:CDS 20.0%
!!! AAAAATTGAAAAGCATGAAT+AGG + chr6_1:26103891-26103910 None:intergenic 20.0%
! ACTAAAGGCAATATTCATAT+TGG - chr6_1:26103191-26103210 Msa0880030:three_prime_UTR 25.0%
! ATTGAGATATTCAATTGGTT+TGG - chr6_1:26103235-26103254 Msa0880030:three_prime_UTR 25.0%
!! TTATCTGATGGAATGATTTT+TGG - chr6_1:26103333-26103352 Msa0880030:three_prime_UTR 25.0%
! TACTTGCAGAAATTATTACA+GGG + chr6_1:26104409-26104428 None:intergenic 25.0%
! TTACTTGCAGAAATTATTAC+AGG + chr6_1:26104410-26104429 None:intergenic 25.0%
! AATAATTTCTGCAAGTAATC+TGG - chr6_1:26104412-26104431 Msa0880030:five_prime_UTR 25.0%
! GGATATTTCATTTCTGTATT+TGG - chr6_1:26104545-26104564 Msa0880030:five_prime_UTR 25.0%
!! TAAGAGATGTGAAACAATTT+TGG - chr6_1:26104651-26104670 Msa0880030:five_prime_UTR 25.0%
! ACTAAAGGCAATATTCATAT+TGG - chr6_1:26103191-26103210 Msa0880030:three_prime_UTR 25.0%
! ATTGAGATATTCAATTGGTT+TGG - chr6_1:26103235-26103254 Msa0880030:three_prime_UTR 25.0%
!! TTATCTGATGGAATGATTTT+TGG - chr6_1:26103333-26103352 Msa0880030:three_prime_UTR 25.0%
! TACTTGCAGAAATTATTACA+GGG + chr6_1:26104409-26104428 None:intergenic 25.0%
! TTACTTGCAGAAATTATTAC+AGG + chr6_1:26104410-26104429 None:intergenic 25.0%
! AATAATTTCTGCAAGTAATC+TGG - chr6_1:26104412-26104431 Msa0880030:five_prime_UTR 25.0%
! GGATATTTCATTTCTGTATT+TGG - chr6_1:26104545-26104564 Msa0880030:five_prime_UTR 25.0%
!! TAAGAGATGTGAAACAATTT+TGG - chr6_1:26104651-26104670 Msa0880030:five_prime_UTR 25.0%
TGGTACATGATAGAACATTA+TGG - chr6_1:26103080-26103099 Msa0880030:three_prime_UTR 30.0%
TGAATCCTTTGTGTAACTAA+AGG - chr6_1:26103176-26103195 Msa0880030:three_prime_UTR 30.0%
TATTGCCTTTAGTTACACAA+AGG + chr6_1:26103184-26103203 None:intergenic 30.0%
CAATAAAAGTGGGTACAATA+AGG + chr6_1:26103280-26103299 None:intergenic 30.0%
!! CTTATTGTACCCACTTTTAT+TGG - chr6_1:26103278-26103297 Msa0880030:three_prime_UTR 30.0%
!! TGATGGAATGATTTTTGGAT+AGG - chr6_1:26103338-26103357 Msa0880030:three_prime_UTR 30.0%
!! AATCTCTGAAATCAAAGGTA+AGG + chr6_1:26103948-26103967 None:intergenic 30.0%
GATTATTTGGAAGAAGTAGT+AGG - chr6_1:26103977-26103996 Msa0880030:intron 30.0%
AAAGAGAAAGTAGTGTAGAA+AGG - chr6_1:26104217-26104236 Msa0880030:five_prime_UTR 30.0%
TAGAATAGAACAATGGAACA+GGG - chr6_1:26104245-26104264 Msa0880030:five_prime_UTR 30.0%
GAGTAACAATGATTATGAAG+AGG - chr6_1:26104305-26104324 Msa0880030:five_prime_UTR 30.0%
TAACAATGATTATGAAGAGG+CGG - chr6_1:26104308-26104327 Msa0880030:five_prime_UTR 30.0%
GCATAGTTGAAATTCAAACA+CGG + chr6_1:26104625-26104644 None:intergenic 30.0%
! AACAATTTTGGATCGAATCA+TGG - chr6_1:26104663-26104682 Msa0880030:five_prime_UTR 30.0%
TGGTACATGATAGAACATTA+TGG - chr6_1:26103080-26103099 Msa0880030:three_prime_UTR 30.0%
TGAATCCTTTGTGTAACTAA+AGG - chr6_1:26103176-26103195 Msa0880030:three_prime_UTR 30.0%
TATTGCCTTTAGTTACACAA+AGG + chr6_1:26103184-26103203 None:intergenic 30.0%
CAATAAAAGTGGGTACAATA+AGG + chr6_1:26103280-26103299 None:intergenic 30.0%
!! CTTATTGTACCCACTTTTAT+TGG - chr6_1:26103278-26103297 Msa0880030:three_prime_UTR 30.0%
!! TGATGGAATGATTTTTGGAT+AGG - chr6_1:26103338-26103357 Msa0880030:three_prime_UTR 30.0%
!! AATCTCTGAAATCAAAGGTA+AGG + chr6_1:26103948-26103967 None:intergenic 30.0%
GATTATTTGGAAGAAGTAGT+AGG - chr6_1:26103977-26103996 Msa0880030:intron 30.0%
AAAGAGAAAGTAGTGTAGAA+AGG - chr6_1:26104217-26104236 Msa0880030:five_prime_UTR 30.0%
TAGAATAGAACAATGGAACA+GGG - chr6_1:26104245-26104264 Msa0880030:five_prime_UTR 30.0%
GAGTAACAATGATTATGAAG+AGG - chr6_1:26104305-26104324 Msa0880030:five_prime_UTR 30.0%
TAACAATGATTATGAAGAGG+CGG - chr6_1:26104308-26104327 Msa0880030:five_prime_UTR 30.0%
GCATAGTTGAAATTCAAACA+CGG + chr6_1:26104625-26104644 None:intergenic 30.0%
! AACAATTTTGGATCGAATCA+TGG - chr6_1:26104663-26104682 Msa0880030:five_prime_UTR 30.0%
TAAGAAGGGCCAATAAAAGT+GGG + chr6_1:26103290-26103309 None:intergenic 35.0%
ACTCCCAAAATGAGTAAGAA+GGG + chr6_1:26103304-26103323 None:intergenic 35.0%
ATTCCATCAGATAAAGCTCA+AGG + chr6_1:26103327-26103346 None:intergenic 35.0%
AAATTACAATTGTGGGTACC+AGG + chr6_1:26103482-26103501 None:intergenic 35.0%
AAGCAATGATAGACAATGCA+CGG + chr6_1:26103670-26103689 None:intergenic 35.0%
TTGCTACTGACATTGTGATT+TGG - chr6_1:26103705-26103724 Msa0880030:CDS 35.0%
AGAAGTCAACAATGATTGGT+CGG + chr6_1:26103747-26103766 None:intergenic 35.0%
!! ATTTTCGAGAAGCTACTTGT+AGG - chr6_1:26103779-26103798 Msa0880030:CDS 35.0%
TGCATCTAAAGAAGATTAGC+AGG - chr6_1:26103848-26103867 Msa0880030:CDS 35.0%
! AAAAGCATGAATAGGCTATG+TGG + chr6_1:26103883-26103902 None:intergenic 35.0%
!! CCTCAAATCTCTGAAATCAA+AGG + chr6_1:26103953-26103972 None:intergenic 35.0%
! CCTTTGATTTCAGAGATTTG+AGG - chr6_1:26103950-26103969 Msa0880030:intron 35.0%
GATTTGAGGAAGCGATTATT+TGG - chr6_1:26103964-26103983 Msa0880030:intron 35.0%
CTAGAATAGAACAATGGAAC+AGG - chr6_1:26104244-26104263 Msa0880030:five_prime_UTR 35.0%
AACAATGATTATGAAGAGGC+GGG - chr6_1:26104309-26104328 Msa0880030:five_prime_UTR 35.0%
!! TTAGTTTGCACCTATTGAGT+TGG - chr6_1:26104440-26104459 Msa0880030:five_prime_UTR 35.0%
AAAACTACAGCCAACTCAAT+AGG + chr6_1:26104453-26104472 None:intergenic 35.0%
!! GTTTTGATATAGTTCAGCAG+TGG - chr6_1:26104524-26104543 Msa0880030:five_prime_UTR 35.0%
GTATTTGGATGAATGTTCGA+TGG - chr6_1:26104560-26104579 Msa0880030:five_prime_UTR 35.0%
ATTTGCAACAGAACAAAGGA+AGG + chr6_1:26104702-26104721 None:intergenic 35.0%
! AGTGATTTGCAACAGAACAA+AGG + chr6_1:26104706-26104725 None:intergenic 35.0%
AATAGTTAACGGAAGAAGTG+AGG - chr6_1:26104730-26104749 Msa0880030:five_prime_UTR 35.0%
! AGAAAATCTGACCCATTTTG+TGG - chr6_1:26104759-26104778 Msa0880030:five_prime_UTR 35.0%
TAAGAAGGGCCAATAAAAGT+GGG + chr6_1:26103290-26103309 None:intergenic 35.0%
ACTCCCAAAATGAGTAAGAA+GGG + chr6_1:26103304-26103323 None:intergenic 35.0%
ATTCCATCAGATAAAGCTCA+AGG + chr6_1:26103327-26103346 None:intergenic 35.0%
AAATTACAATTGTGGGTACC+AGG + chr6_1:26103482-26103501 None:intergenic 35.0%
AAGCAATGATAGACAATGCA+CGG + chr6_1:26103670-26103689 None:intergenic 35.0%
TTGCTACTGACATTGTGATT+TGG - chr6_1:26103705-26103724 Msa0880030:CDS 35.0%
AGAAGTCAACAATGATTGGT+CGG + chr6_1:26103747-26103766 None:intergenic 35.0%
!! ATTTTCGAGAAGCTACTTGT+AGG - chr6_1:26103779-26103798 Msa0880030:CDS 35.0%
TGCATCTAAAGAAGATTAGC+AGG - chr6_1:26103848-26103867 Msa0880030:CDS 35.0%
! AAAAGCATGAATAGGCTATG+TGG + chr6_1:26103883-26103902 None:intergenic 35.0%
!! CCTCAAATCTCTGAAATCAA+AGG + chr6_1:26103953-26103972 None:intergenic 35.0%
! CCTTTGATTTCAGAGATTTG+AGG - chr6_1:26103950-26103969 Msa0880030:intron 35.0%
GATTTGAGGAAGCGATTATT+TGG - chr6_1:26103964-26103983 Msa0880030:intron 35.0%
CTAGAATAGAACAATGGAAC+AGG - chr6_1:26104244-26104263 Msa0880030:five_prime_UTR 35.0%
AACAATGATTATGAAGAGGC+GGG - chr6_1:26104309-26104328 Msa0880030:five_prime_UTR 35.0%
!! TTAGTTTGCACCTATTGAGT+TGG - chr6_1:26104440-26104459 Msa0880030:five_prime_UTR 35.0%
AAAACTACAGCCAACTCAAT+AGG + chr6_1:26104453-26104472 None:intergenic 35.0%
!! GTTTTGATATAGTTCAGCAG+TGG - chr6_1:26104524-26104543 Msa0880030:five_prime_UTR 35.0%
GTATTTGGATGAATGTTCGA+TGG - chr6_1:26104560-26104579 Msa0880030:five_prime_UTR 35.0%
ATTTGCAACAGAACAAAGGA+AGG + chr6_1:26104702-26104721 None:intergenic 35.0%
! AGTGATTTGCAACAGAACAA+AGG + chr6_1:26104706-26104725 None:intergenic 35.0%
AATAGTTAACGGAAGAAGTG+AGG - chr6_1:26104730-26104749 Msa0880030:five_prime_UTR 35.0%
! AGAAAATCTGACCCATTTTG+TGG - chr6_1:26104759-26104778 Msa0880030:five_prime_UTR 35.0%
!! ACTAAATGGGGTTGGCTAAA+TGG + chr6_1:26103117-26103136 None:intergenic 40.0%
ATTTAGCCAACCCCATTTAG+TGG - chr6_1:26103116-26103135 Msa0880030:three_prime_UTR 40.0%
TTTAGCCAACCCCATTTAGT+GGG - chr6_1:26103117-26103136 Msa0880030:three_prime_UTR 40.0%
AAACCTTACCCCACTAAATG+GGG + chr6_1:26103129-26103148 None:intergenic 40.0%
CAAACCTTACCCCACTAAAT+GGG + chr6_1:26103130-26103149 None:intergenic 40.0%
GTAAGAAGGGCCAATAAAAG+TGG + chr6_1:26103291-26103310 None:intergenic 40.0%
! TTGGCCCTTCTTACTCATTT+TGG - chr6_1:26103297-26103316 Msa0880030:three_prime_UTR 40.0%
! TGGCCCTTCTTACTCATTTT+GGG - chr6_1:26103298-26103317 Msa0880030:three_prime_UTR 40.0%
GACTCCCAAAATGAGTAAGA+AGG + chr6_1:26103305-26103324 None:intergenic 40.0%
! AGTCCTTGAGCTTTATCTGA+TGG - chr6_1:26103321-26103340 Msa0880030:three_prime_UTR 40.0%
ACAAGCAGTAAGGACAACAT+TGG + chr6_1:26103423-26103442 None:intergenic 40.0%
TGCAAACAACACAAGCAGTA+AGG + chr6_1:26103433-26103452 None:intergenic 40.0%
CTACCGAGTTCAGTATTGTT+TGG - chr6_1:26103527-26103546 Msa0880030:CDS 40.0%
CAGCCAAACAATACTGAACT+CGG + chr6_1:26103533-26103552 None:intergenic 40.0%
AGTATTGTTTGGCTGAGATG+AGG - chr6_1:26103538-26103557 Msa0880030:CDS 40.0%
GATTTGGCTGTCATTCTTCT+AGG - chr6_1:26103721-26103740 Msa0880030:CDS 40.0%
GGAGAGAAGTCAACAATGAT+TGG + chr6_1:26103751-26103770 None:intergenic 40.0%
!! TGTTGACTTCTCTCCTGTTA+CGG - chr6_1:26103756-26103775 Msa0880030:CDS 40.0%
GAAGAGAATGTATGCAATCG+AGG - chr6_1:26103808-26103827 Msa0880030:CDS 40.0%
TCATAGTTACGATTTCTCGG+GGG + chr6_1:26104039-26104058 None:intergenic 40.0%
CTCATAGTTACGATTTCTCG+GGG + chr6_1:26104040-26104059 None:intergenic 40.0%
CCTCATAGTTACGATTTCTC+GGG + chr6_1:26104041-26104060 None:intergenic 40.0%
CCCTCATAGTTACGATTTCT+CGG + chr6_1:26104042-26104061 None:intergenic 40.0%
CCGAGAAATCGTAACTATGA+GGG - chr6_1:26104039-26104058 Msa0880030:five_prime_UTR 40.0%
CGAGAAATCGTAACTATGAG+GGG - chr6_1:26104040-26104059 Msa0880030:five_prime_UTR 40.0%
CTTTCTCCTCTGATAGGATT+CGG + chr6_1:26104201-26104220 None:intergenic 40.0%
CTTTCTCTTTCTCCTCTGAT+AGG + chr6_1:26104207-26104226 None:intergenic 40.0%
GGAGAGCTAGAATAGAACAA+TGG - chr6_1:26104238-26104257 Msa0880030:five_prime_UTR 40.0%
AGTTGGAGATTCTGGTAACA+AGG - chr6_1:26104275-26104294 Msa0880030:five_prime_UTR 40.0%
TTACAGGGTCTTCTCACTTT+GGG + chr6_1:26104394-26104413 None:intergenic 40.0%
ATTACAGGGTCTTCTCACTT+TGG + chr6_1:26104395-26104414 None:intergenic 40.0%
TGTTCGATGGTAAACTCTGT+TGG - chr6_1:26104573-26104592 Msa0880030:five_prime_UTR 40.0%
AAACTCTGTTGGAGATTACC+TGG - chr6_1:26104584-26104603 Msa0880030:five_prime_UTR 40.0%
AACTCTGTTGGAGATTACCT+GGG - chr6_1:26104585-26104604 Msa0880030:five_prime_UTR 40.0%
AGATTACCTGGGTGAAATAG+AGG - chr6_1:26104596-26104615 Msa0880030:five_prime_UTR 40.0%
GATTACCTGGGTGAAATAGA+GGG - chr6_1:26104597-26104616 Msa0880030:five_prime_UTR 40.0%
! CCATTTTGTGGATCTTCTGA+TGG - chr6_1:26104771-26104790 Msa0880030:five_prime_UTR 40.0%
!! ACTAAATGGGGTTGGCTAAA+TGG + chr6_1:26103117-26103136 None:intergenic 40.0%
ATTTAGCCAACCCCATTTAG+TGG - chr6_1:26103116-26103135 Msa0880030:three_prime_UTR 40.0%
TTTAGCCAACCCCATTTAGT+GGG - chr6_1:26103117-26103136 Msa0880030:three_prime_UTR 40.0%
AAACCTTACCCCACTAAATG+GGG + chr6_1:26103129-26103148 None:intergenic 40.0%
CAAACCTTACCCCACTAAAT+GGG + chr6_1:26103130-26103149 None:intergenic 40.0%
GTAAGAAGGGCCAATAAAAG+TGG + chr6_1:26103291-26103310 None:intergenic 40.0%
! TTGGCCCTTCTTACTCATTT+TGG - chr6_1:26103297-26103316 Msa0880030:three_prime_UTR 40.0%
! TGGCCCTTCTTACTCATTTT+GGG - chr6_1:26103298-26103317 Msa0880030:three_prime_UTR 40.0%
GACTCCCAAAATGAGTAAGA+AGG + chr6_1:26103305-26103324 None:intergenic 40.0%
! AGTCCTTGAGCTTTATCTGA+TGG - chr6_1:26103321-26103340 Msa0880030:three_prime_UTR 40.0%
ACAAGCAGTAAGGACAACAT+TGG + chr6_1:26103423-26103442 None:intergenic 40.0%
TGCAAACAACACAAGCAGTA+AGG + chr6_1:26103433-26103452 None:intergenic 40.0%
CTACCGAGTTCAGTATTGTT+TGG - chr6_1:26103527-26103546 Msa0880030:CDS 40.0%
CAGCCAAACAATACTGAACT+CGG + chr6_1:26103533-26103552 None:intergenic 40.0%
AGTATTGTTTGGCTGAGATG+AGG - chr6_1:26103538-26103557 Msa0880030:CDS 40.0%
GATTTGGCTGTCATTCTTCT+AGG - chr6_1:26103721-26103740 Msa0880030:CDS 40.0%
GGAGAGAAGTCAACAATGAT+TGG + chr6_1:26103751-26103770 None:intergenic 40.0%
!! TGTTGACTTCTCTCCTGTTA+CGG - chr6_1:26103756-26103775 Msa0880030:CDS 40.0%
GAAGAGAATGTATGCAATCG+AGG - chr6_1:26103808-26103827 Msa0880030:CDS 40.0%
TCATAGTTACGATTTCTCGG+GGG + chr6_1:26104039-26104058 None:intergenic 40.0%
CTCATAGTTACGATTTCTCG+GGG + chr6_1:26104040-26104059 None:intergenic 40.0%
CCTCATAGTTACGATTTCTC+GGG + chr6_1:26104041-26104060 None:intergenic 40.0%
CCCTCATAGTTACGATTTCT+CGG + chr6_1:26104042-26104061 None:intergenic 40.0%
CCGAGAAATCGTAACTATGA+GGG - chr6_1:26104039-26104058 Msa0880030:five_prime_UTR 40.0%
CGAGAAATCGTAACTATGAG+GGG - chr6_1:26104040-26104059 Msa0880030:five_prime_UTR 40.0%
CTTTCTCCTCTGATAGGATT+CGG + chr6_1:26104201-26104220 None:intergenic 40.0%
CTTTCTCTTTCTCCTCTGAT+AGG + chr6_1:26104207-26104226 None:intergenic 40.0%
GGAGAGCTAGAATAGAACAA+TGG - chr6_1:26104238-26104257 Msa0880030:five_prime_UTR 40.0%
AGTTGGAGATTCTGGTAACA+AGG - chr6_1:26104275-26104294 Msa0880030:five_prime_UTR 40.0%
TTACAGGGTCTTCTCACTTT+GGG + chr6_1:26104394-26104413 None:intergenic 40.0%
ATTACAGGGTCTTCTCACTT+TGG + chr6_1:26104395-26104414 None:intergenic 40.0%
TGTTCGATGGTAAACTCTGT+TGG - chr6_1:26104573-26104592 Msa0880030:five_prime_UTR 40.0%
AAACTCTGTTGGAGATTACC+TGG - chr6_1:26104584-26104603 Msa0880030:five_prime_UTR 40.0%
AACTCTGTTGGAGATTACCT+GGG - chr6_1:26104585-26104604 Msa0880030:five_prime_UTR 40.0%
AGATTACCTGGGTGAAATAG+AGG - chr6_1:26104596-26104615 Msa0880030:five_prime_UTR 40.0%
GATTACCTGGGTGAAATAGA+GGG - chr6_1:26104597-26104616 Msa0880030:five_prime_UTR 40.0%
TTAGCCAACCCCATTTAGTG+GGG - chr6_1:26103118-26103137 Msa0880030:three_prime_UTR 45.0%
CCAAACCTTACCCCACTAAA+TGG + chr6_1:26103131-26103150 None:intergenic 45.0%
CCATTTAGTGGGGTAAGGTT+TGG - chr6_1:26103128-26103147 Msa0880030:three_prime_UTR 45.0%
TTGGACAGTAGCAGATGTAC+TGG + chr6_1:26103404-26103423 None:intergenic 45.0%
TACAATTGTGGGTACCAGGA+AGG + chr6_1:26103478-26103497 None:intergenic 45.0%
AATGTCAGTAGCAATGAGCG+AGG + chr6_1:26103699-26103718 None:intergenic 45.0%
GCTTCTCGAAAATCCGTAAC+AGG + chr6_1:26103772-26103791 None:intergenic 45.0%
GAGAATGTATGCAATCGAGG+TGG - chr6_1:26103811-26103830 Msa0880030:CDS 45.0%
TTGGAAGAAGTAGTAGGCGT+TGG - chr6_1:26103983-26104002 Msa0880030:intron 45.0%
CATAGTTACGATTTCTCGGG+GGG + chr6_1:26104038-26104057 None:intergenic 45.0%
CCCGAGAAATCGTAACTATG+AGG - chr6_1:26104038-26104057 Msa0880030:five_prime_UTR 45.0%
AATCCCTTCTACCAGAACCA+CGG + chr6_1:26104080-26104099 None:intergenic 45.0%
!! TGGTTCTGGTAGAAGGGATT+TGG - chr6_1:26104080-26104099 Msa0880030:five_prime_UTR 45.0%
AGAACAATGGAACAGGGAGA+AGG - chr6_1:26104251-26104270 Msa0880030:five_prime_UTR 45.0%
GAGAAGGAAGTTGGAGATTC+TGG - chr6_1:26104267-26104286 Msa0880030:five_prime_UTR 45.0%
!!! CAGACTCGCTGCCATTTTTT+AGG + chr6_1:26104335-26104354 None:intergenic 45.0%
CTAAAAAATGGCAGCGAGTC+TGG - chr6_1:26104333-26104352 Msa0880030:five_prime_UTR 45.0%
AGTTAACGGAAGAAGTGAGG+AGG - chr6_1:26104733-26104752 Msa0880030:five_prime_UTR 45.0%
TTAGCCAACCCCATTTAGTG+GGG - chr6_1:26103118-26103137 Msa0880030:three_prime_UTR 45.0%
CCAAACCTTACCCCACTAAA+TGG + chr6_1:26103131-26103150 None:intergenic 45.0%
CCATTTAGTGGGGTAAGGTT+TGG - chr6_1:26103128-26103147 Msa0880030:three_prime_UTR 45.0%
TTGGACAGTAGCAGATGTAC+TGG + chr6_1:26103404-26103423 None:intergenic 45.0%
TACAATTGTGGGTACCAGGA+AGG + chr6_1:26103478-26103497 None:intergenic 45.0%
AATGTCAGTAGCAATGAGCG+AGG + chr6_1:26103699-26103718 None:intergenic 45.0%
GCTTCTCGAAAATCCGTAAC+AGG + chr6_1:26103772-26103791 None:intergenic 45.0%
GAGAATGTATGCAATCGAGG+TGG - chr6_1:26103811-26103830 Msa0880030:CDS 45.0%
TTGGAAGAAGTAGTAGGCGT+TGG - chr6_1:26103983-26104002 Msa0880030:intron 45.0%
CATAGTTACGATTTCTCGGG+GGG + chr6_1:26104038-26104057 None:intergenic 45.0%
CCCGAGAAATCGTAACTATG+AGG - chr6_1:26104038-26104057 Msa0880030:five_prime_UTR 45.0%
AATCCCTTCTACCAGAACCA+CGG + chr6_1:26104080-26104099 None:intergenic 45.0%
!! TGGTTCTGGTAGAAGGGATT+TGG - chr6_1:26104080-26104099 Msa0880030:five_prime_UTR 45.0%
AGAACAATGGAACAGGGAGA+AGG - chr6_1:26104251-26104270 Msa0880030:five_prime_UTR 45.0%
GAGAAGGAAGTTGGAGATTC+TGG - chr6_1:26104267-26104286 Msa0880030:five_prime_UTR 45.0%
!!! CAGACTCGCTGCCATTTTTT+AGG + chr6_1:26104335-26104354 None:intergenic 45.0%
CTAAAAAATGGCAGCGAGTC+TGG - chr6_1:26104333-26104352 Msa0880030:five_prime_UTR 45.0%
AGTTAACGGAAGAAGTGAGG+AGG - chr6_1:26104733-26104752 Msa0880030:five_prime_UTR 45.0%
CTTACCCCACTAAATGGGGT+TGG + chr6_1:26103125-26103144 None:intergenic 50.0%
CAACCCCATTTAGTGGGGTA+AGG - chr6_1:26103123-26103142 Msa0880030:three_prime_UTR 50.0%
ACCTTGTGCTCTGTCACACA+TGG - chr6_1:26103362-26103381 Msa0880030:three_prime_UTR 50.0%
ACCATGTGTGACAGAGCACA+AGG + chr6_1:26103366-26103385 None:intergenic 50.0%
!! TATGAGGGGCGTTCGTATTC+TGG - chr6_1:26104054-26104073 Msa0880030:five_prime_UTR 50.0%
CTGGTAGAAGGGATTTGGAC+AGG - chr6_1:26104085-26104104 Msa0880030:five_prime_UTR 50.0%
AGGGATTTGGACAGGTCTCA+TGG - chr6_1:26104093-26104112 Msa0880030:five_prime_UTR 50.0%
! GCTTCTTGGCCTTCTACCAT+GGG + chr6_1:26104121-26104140 None:intergenic 50.0%
TTCCTCTATGCCGAGGACTA+CGG + chr6_1:26104143-26104162 None:intergenic 50.0%
AAGGCGGAGTAGAAGTCCAA+TGG - chr6_1:26104161-26104180 Msa0880030:five_prime_UTR 50.0%
AGGCGGAGTAGAAGTCCAAT+GGG - chr6_1:26104162-26104181 Msa0880030:five_prime_UTR 50.0%
GAAGTCCAATGGGAAGAGAC+AGG - chr6_1:26104172-26104191 Msa0880030:five_prime_UTR 50.0%
AGGAGTCCGAATCCTATCAG+AGG - chr6_1:26104192-26104211 Msa0880030:five_prime_UTR 50.0%
TGGAACAGGGAGAAGGAAGT+TGG - chr6_1:26104258-26104277 Msa0880030:five_prime_UTR 50.0%
GAAGAGGCGGGCCTAAAAAA+TGG - chr6_1:26104321-26104340 Msa0880030:five_prime_UTR 50.0%
CTTACCCCACTAAATGGGGT+TGG + chr6_1:26103125-26103144 None:intergenic 50.0%
CAACCCCATTTAGTGGGGTA+AGG - chr6_1:26103123-26103142 Msa0880030:three_prime_UTR 50.0%
ACCTTGTGCTCTGTCACACA+TGG - chr6_1:26103362-26103381 Msa0880030:three_prime_UTR 50.0%
ACCATGTGTGACAGAGCACA+AGG + chr6_1:26103366-26103385 None:intergenic 50.0%
!! TATGAGGGGCGTTCGTATTC+TGG - chr6_1:26104054-26104073 Msa0880030:five_prime_UTR 50.0%
CTGGTAGAAGGGATTTGGAC+AGG - chr6_1:26104085-26104104 Msa0880030:five_prime_UTR 50.0%
AGGGATTTGGACAGGTCTCA+TGG - chr6_1:26104093-26104112 Msa0880030:five_prime_UTR 50.0%
! GCTTCTTGGCCTTCTACCAT+GGG + chr6_1:26104121-26104140 None:intergenic 50.0%
TTCCTCTATGCCGAGGACTA+CGG + chr6_1:26104143-26104162 None:intergenic 50.0%
AAGGCGGAGTAGAAGTCCAA+TGG - chr6_1:26104161-26104180 Msa0880030:five_prime_UTR 50.0%
AGGCGGAGTAGAAGTCCAAT+GGG - chr6_1:26104162-26104181 Msa0880030:five_prime_UTR 50.0%
GAAGTCCAATGGGAAGAGAC+AGG - chr6_1:26104172-26104191 Msa0880030:five_prime_UTR 50.0%
AGGAGTCCGAATCCTATCAG+AGG - chr6_1:26104192-26104211 Msa0880030:five_prime_UTR 50.0%
TGGAACAGGGAGAAGGAAGT+TGG - chr6_1:26104258-26104277 Msa0880030:five_prime_UTR 50.0%
GAAGAGGCGGGCCTAAAAAA+TGG - chr6_1:26104321-26104340 Msa0880030:five_prime_UTR 50.0%
!! AGGCGTTGGAATGACCGTAG+TGG - chr6_1:26103997-26104016 Msa0880030:exon 55.0%
! ACCGTAGTGGAAGCAGAAGC+CGG - chr6_1:26104010-26104029 Msa0880030:exon 55.0%
TCCGGCTTCTGCTTCCACTA+CGG + chr6_1:26104014-26104033 None:intergenic 55.0%
TCGTATTCTGGCCGTGGTTC+TGG - chr6_1:26104066-26104085 Msa0880030:five_prime_UTR 55.0%
!! TGGCCGTGGTTCTGGTAGAA+GGG - chr6_1:26104074-26104093 Msa0880030:five_prime_UTR 55.0%
CTCATGGCTCCCATGGTAGA+AGG - chr6_1:26104109-26104128 Msa0880030:five_prime_UTR 55.0%
! GGCTTCTTGGCCTTCTACCA+TGG + chr6_1:26104122-26104141 None:intergenic 55.0%
GTAGTCCTCGGCATAGAGGA+AGG - chr6_1:26104142-26104161 Msa0880030:five_prime_UTR 55.0%
GGACTCCTGTCTCTTCCCAT+TGG + chr6_1:26104180-26104199 None:intergenic 55.0%
CGGTTCCCTCTATTTCACCC+AGG + chr6_1:26104605-26104624 None:intergenic 55.0%
!! AGGCGTTGGAATGACCGTAG+TGG - chr6_1:26103997-26104016 Msa0880030:exon 55.0%
! ACCGTAGTGGAAGCAGAAGC+CGG - chr6_1:26104010-26104029 Msa0880030:exon 55.0%
TCCGGCTTCTGCTTCCACTA+CGG + chr6_1:26104014-26104033 None:intergenic 55.0%
TCGTATTCTGGCCGTGGTTC+TGG - chr6_1:26104066-26104085 Msa0880030:five_prime_UTR 55.0%
!! TGGCCGTGGTTCTGGTAGAA+GGG - chr6_1:26104074-26104093 Msa0880030:five_prime_UTR 55.0%
CTCATGGCTCCCATGGTAGA+AGG - chr6_1:26104109-26104128 Msa0880030:five_prime_UTR 55.0%
! GGCTTCTTGGCCTTCTACCA+TGG + chr6_1:26104122-26104141 None:intergenic 55.0%
GTAGTCCTCGGCATAGAGGA+AGG - chr6_1:26104142-26104161 Msa0880030:five_prime_UTR 55.0%
GGACTCCTGTCTCTTCCCAT+TGG + chr6_1:26104180-26104199 None:intergenic 55.0%
CGGTTCCCTCTATTTCACCC+AGG + chr6_1:26104605-26104624 None:intergenic 55.0%
TACGATTTCTCGGGGGGCTC+CGG + chr6_1:26104032-26104051 None:intergenic 60.0%
!! CTGGCCGTGGTTCTGGTAGA+AGG - chr6_1:26104073-26104092 Msa0880030:five_prime_UTR 60.0%
GACAGGTCTCATGGCTCCCA+TGG - chr6_1:26104102-26104121 Msa0880030:five_prime_UTR 60.0%
GGCCAAGAAGCCGTAGTCCT+CGG - chr6_1:26104130-26104149 Msa0880030:five_prime_UTR 60.0%
TGCCGAGGACTACGGCTTCT+TGG + chr6_1:26104135-26104154 None:intergenic 60.0%
AGCCGTAGTCCTCGGCATAG+AGG - chr6_1:26104138-26104157 Msa0880030:five_prime_UTR 60.0%
GTCCTCGGCATAGAGGAAGG+CGG - chr6_1:26104145-26104164 Msa0880030:five_prime_UTR 60.0%
TACGATTTCTCGGGGGGCTC+CGG + chr6_1:26104032-26104051 None:intergenic 60.0%
!! CTGGCCGTGGTTCTGGTAGA+AGG - chr6_1:26104073-26104092 Msa0880030:five_prime_UTR 60.0%
GACAGGTCTCATGGCTCCCA+TGG - chr6_1:26104102-26104121 Msa0880030:five_prime_UTR 60.0%
GGCCAAGAAGCCGTAGTCCT+CGG - chr6_1:26104130-26104149 Msa0880030:five_prime_UTR 60.0%
TGCCGAGGACTACGGCTTCT+TGG + chr6_1:26104135-26104154 None:intergenic 60.0%
AGCCGTAGTCCTCGGCATAG+AGG - chr6_1:26104138-26104157 Msa0880030:five_prime_UTR 60.0%
GTCCTCGGCATAGAGGAAGG+CGG - chr6_1:26104145-26104164 Msa0880030:five_prime_UTR 60.0%
GGGCGTTCGTATTCTGGCCG+TGG - chr6_1:26104060-26104079 Msa0880030:five_prime_UTR 65.0%
CTCCGCCTTCCTCTATGCCG+AGG + chr6_1:26104150-26104169 None:intergenic 65.0%
GGGCGTTCGTATTCTGGCCG+TGG - chr6_1:26104060-26104079 Msa0880030:five_prime_UTR 65.0%
CTCCGCCTTCCTCTATGCCG+AGG + chr6_1:26104150-26104169 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26103068 26104790 26103068 ID=Msa0880030;Name=Msa0880030
chr6_1 mRNA 26103068 26104790 26103068 ID=Msa0880030-mRNA-1;Parent=Msa0880030;Name=Msa0880030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=779|1|1|1|1|1|2|419|143
chr6_1 exon 26103068 26103895 26103068 ID=Msa0880030-mRNA-1:exon:6401;Parent=Msa0880030-mRNA-1
chr6_1 exon 26103989 26104790 26103989 ID=Msa0880030-mRNA-1:exon:6400;Parent=Msa0880030-mRNA-1
chr6_1 five_prime_UTR 26104012 26104790 26104012 ID=Msa0880030-mRNA-1:five_prime_utr;Parent=Msa0880030-mRNA-1
chr6_1 CDS 26103989 26104011 26103989 ID=Msa0880030-mRNA-1:cds;Parent=Msa0880030-mRNA-1
chr6_1 CDS 26103487 26103895 26103487 ID=Msa0880030-mRNA-1:cds;Parent=Msa0880030-mRNA-1
chr6_1 three_prime_UTR 26103068 26103486 26103068 ID=Msa0880030-mRNA-1:three_prime_utr;Parent=Msa0880030-mRNA-1
Gene Sequence

>Msa0880030

ATGCATCTAAAGAAGATTAGCAGAGATTTGAGGAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGTAGTGGAAGCAGAAGCCGGAGCCCCCCGAGAAATCGTAACTATGAGGGGCGTTCGTATTCTGGCCGTGGTTCTGGTAGAAGGGATTTGGACAGGTCTCATGGCTCCCATGGTAGAAGGCCAAGAAGCCGTAGTCCTCGGCATAGAGGAAGGCGGAGTAGAAGTCCAATGGGAAGAGACAGGAGTCCGAATCCTATCAGAGGAGAAAGAGAAAGTAGTGTAGAAAGGAGAGCTAGAATAGAACAATGGAACAGGGAGAAGGAAGTTGGAGATTCTGGTAACAAGGACAATAAGAGTAACAATGATTATGAAGAGGCGGGCCTAAAAAATGGCAGCGAGTCTGGCAATCATCAGACATAG
Protein sequence

>Msa0880030

MHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGSHGRRPRSRSPRHRGRRSRSPMGRDRSPNPIRGERESSVERRARIEQWNREKEVGDSGNKDNKSNNDYEEAGLKNGSESGNHQT*