AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581330 MtrunA17_Chr4g0064091 97.500 480 11 1 1 480 1 479 0.0 979
Msa0581330 MtrunA17_Chr2g0333591 48.252 429 211 6 27 455 27 444 1.44e-144 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581330 AT2G42160.1 61.179 492 175 6 1 480 1 488 0.0 629
Msa0581330 AT2G42160.2 62.045 440 153 4 1 429 1 437 0.0 577
Msa0581330 AT2G42160.3 62.129 404 139 4 1 393 1 401 0.0 531
Msa0581330 AT2G26000.3 41.416 466 252 9 27 480 22 478 7.83e-129 382
Msa0581330 AT2G26000.2 41.416 466 252 9 27 480 22 478 7.83e-129 382
Msa0581330 AT2G26000.1 39.056 466 245 10 27 480 22 460 1.52e-115 348

Find 142 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACACGTATTCGAATTTA+TGG 0.122198 4_1:-86715305 Msa0581330:three_prime_UTR
CCTCTGCGTTCTGTGAATTT+AGG 0.150005 4_1:+86720009 None:intergenic
GGTGAGAGAGAATTGGAATT+AGG 0.180412 4_1:+86719946 None:intergenic
CTCTGCGTTCTGTGAATTTA+GGG 0.219295 4_1:+86720010 None:intergenic
AAACTTCTTGCCATTGAAAT+AGG 0.232877 4_1:+86719653 None:intergenic
AGTGAAGATTTAGAAGTTAA+TGG 0.246664 4_1:-86717001 Msa0581330:CDS
TGTACAATTGAGAATGATAT+TGG 0.246949 4_1:-86715062 Msa0581330:three_prime_UTR
GTGCGTATTCCACTTGTATC+AGG 0.257066 4_1:+86718726 None:intergenic
GTGAGAGAGAATTGGAATTA+GGG 0.271739 4_1:+86719947 None:intergenic
GTGGAGAAGGCTGCAACTTC+TGG 0.280137 4_1:-86715980 Msa0581330:CDS
GAATGAGAGGGTCCTTGATT+TGG 0.301939 4_1:-86715594 Msa0581330:CDS
CATTCTGCCCTTAGGTTAAT+CGG 0.302536 4_1:-86715839 Msa0581330:intron
GTGAAGATTTAGAAGTTAAT+GGG 0.313739 4_1:-86717000 Msa0581330:CDS
TCATCGAAGGAGAAATAATT+AGG 0.314747 4_1:+86719901 None:intergenic
CTTCCTTGTGCAGTGGTAGT+TGG 0.319845 4_1:-86720257 Msa0581330:five_prime_UTR
TGAATTGTGAATGTGGAAAA+TGG 0.329568 4_1:+86720160 None:intergenic
CATCCTGTTGTTGACATAAT+CGG 0.338420 4_1:+86717476 None:intergenic
CTTTATATATAGAGTTCGTT+TGG 0.341353 4_1:+86720210 None:intergenic
GAGAAGAGGTGAGAGAGAAT+TGG 0.361552 4_1:+86719939 None:intergenic
GTCAGACTCAAATGGAATAA+AGG 0.364370 4_1:-86715428 Msa0581330:CDS
TTATGTCCATCGACTGAATC+AGG 0.387311 4_1:-86717107 Msa0581330:CDS
ATATAGAGTTCGTTTGGGTT+TGG 0.388436 4_1:+86720216 None:intergenic
ACAACAAATTTGGGATTATG+TGG 0.392975 4_1:-86717137 Msa0581330:CDS
TTCATCATCTTCTCTTCATC+AGG 0.396642 4_1:-86719840 Msa0581330:intron
CGGAGAAAGAATAACGCGTT+TGG 0.398175 4_1:+86720134 None:intergenic
ACCAACATGTCCAGTTTGCT+TGG 0.402731 4_1:-86718911 Msa0581330:CDS
CCGTCTTCTTACATCTCAAT+TGG 0.403056 4_1:-86716387 Msa0581330:CDS
GTCTGGGTTTGTATGATTTG+TGG 0.411595 4_1:-86717415 Msa0581330:CDS
GTGGAACATTAGATGATGTC+TGG 0.413609 4_1:-86717432 Msa0581330:CDS
ACTTCTTGCCTCAATTAGTA+AGG 0.414456 4_1:+86716030 None:intergenic
TGAAACTCACCCAAGCAAAC+TGG 0.414850 4_1:+86718901 None:intergenic
GGTCCTTGATTTGGAGGAAC+AGG 0.415267 4_1:-86715585 Msa0581330:intron
TTCAACTTTGCTGTTAAAGA+AGG 0.416559 4_1:+86716976 None:intergenic
GCATTTCATACCTATTTCAA+TGG 0.416711 4_1:-86719663 Msa0581330:CDS
ATCAATGAGTAAGCCCTATC+CGG 0.417887 4_1:+86715115 None:intergenic
TGTTTGAATCCCAGAGAGAC+TGG 0.421884 4_1:-86718751 Msa0581330:intron
TTCTTGCTGTTTCCAGGAGA+AGG 0.425015 4_1:+86715373 None:intergenic
TTTCCTGTGGCAGTTAAGTC+AGG 0.436305 4_1:+86715202 None:intergenic
TTTATATATAGAGTTCGTTT+GGG 0.442349 4_1:+86720211 None:intergenic
TGCAACTTGTTTGCTTTGTG+TGG 0.442472 4_1:-86715149 Msa0581330:three_prime_UTR
GCTCATGAGCAACCTTCTCC+TGG 0.443145 4_1:-86715385 Msa0581330:CDS
GTTCACTGTATGTCTCTAGA+AGG 0.443877 4_1:-86717046 Msa0581330:CDS
GGAGCGGAGAAGATGAGTTC+GGG 0.448861 4_1:+86720051 None:intergenic
GAGAGGAGTGTGAAGCGCTT+CGG 0.450487 4_1:+86719971 None:intergenic
GGCTGCAACTTCTGGCATGC+TGG 0.450669 4_1:-86715972 Msa0581330:CDS
TGGAGCGGAGAAGATGAGTT+CGG 0.454323 4_1:+86720050 None:intergenic
GATGAAGACGATCAAGATAG+TGG 0.455616 4_1:+86719857 None:intergenic
AGAATTGGAATTAGGGAGAG+AGG 0.456750 4_1:+86719954 None:intergenic
GCAACTTGTTTGCTTTGTGT+GGG 0.456787 4_1:-86715148 Msa0581330:three_prime_UTR
GATAAAATGTCAGACTCAAA+TGG 0.459339 4_1:-86715436 Msa0581330:CDS
GGAACGATGGGATGGAAGAT+AGG 0.463072 4_1:-86719728 Msa0581330:CDS
CGTCGTCGACTGAGTGGACT+CGG 0.465807 4_1:+86720088 None:intergenic
TCTCCTTCGATGATTTCATT+CGG 0.467942 4_1:-86719891 Msa0581330:CDS
GGAGAAAGAATAACGCGTTT+GGG 0.469234 4_1:+86720135 None:intergenic
CTGCCGATTATGTCAACAAC+AGG 0.469592 4_1:-86717479 Msa0581330:CDS
TTATGAATCCTTACTAATTG+AGG 0.471285 4_1:-86716038 Msa0581330:CDS
TCGGAATGTGAAGAAGTTGC+TGG 0.471476 4_1:-86718961 Msa0581330:CDS
TAGAGTTCGTTTGGGTTTGG+CGG 0.476305 4_1:+86720219 None:intergenic
AAGAACATGGTTTCTTTGAT+CGG 0.476637 4_1:+86720114 None:intergenic
TTTGATTTGGTAGGAACGAT+GGG 0.480219 4_1:-86719740 Msa0581330:intron
TGTATGATTTGTGGATTTGT+CGG 0.483896 4_1:-86717406 Msa0581330:CDS
GTGGACATATTTGTCTTGCC+AGG 0.485200 4_1:-86718661 Msa0581330:intron
TGAGAGGGTCCTTGATTTGG+AGG 0.485934 4_1:-86715591 Msa0581330:CDS
TGGGGATGTAATCCCCGGAT+AGG 0.488434 4_1:-86715129 Msa0581330:three_prime_UTR
CCGTTATTACTTACCTCAGC+AGG 0.492902 4_1:+86719627 None:intergenic
GATATGCATTAGAACACTCT+TGG 0.493745 4_1:+86715241 None:intergenic
ATTTGTGGATTTGTCGGATG+TGG 0.494341 4_1:-86717400 Msa0581330:CDS
CCAACATGTCCAGTTTGCTT+GGG 0.495855 4_1:-86718910 Msa0581330:intron
AGAGTTCGTTTGGGTTTGGC+GGG 0.511424 4_1:+86720220 None:intergenic
GTTGCTGGGACTCCTCCAGC+TGG 0.513889 4_1:-86718946 Msa0581330:CDS
CTTCTCCACTGCTTCAGATA+CGG 0.513939 4_1:+86715994 None:intergenic
CAAAGCAAACAAGTTGCAAT+GGG 0.518455 4_1:+86715154 None:intergenic
CAGGATCAATCTAGAATTGA+CGG 0.519347 4_1:-86717088 Msa0581330:CDS
TCAATGAGTAAGCCCTATCC+GGG 0.520907 4_1:+86715116 None:intergenic
TTCACTGTATGTCTCTAGAA+GGG 0.522047 4_1:-86717045 Msa0581330:CDS
TTTGCTTTCCGTGGAATACT+CGG 0.522856 4_1:-86718980 Msa0581330:CDS
TGCGTATTCCACTTGTATCA+GGG 0.527421 4_1:+86718727 None:intergenic
GTTCCACAAATAAAACAAGT+TGG 0.529607 4_1:+86717448 None:intergenic
CGCAAGGGCATTGAAATGAA+TGG 0.532039 4_1:+86718691 None:intergenic
TTCCTTCCTTCCTTGTGCAG+TGG 0.535609 4_1:-86720264 Msa0581330:five_prime_UTR
GGTATTTCTGTACAACCAGC+TGG 0.536457 4_1:+86718931 None:intergenic
GGGGATGTAATCCCCGGATA+GGG 0.540545 4_1:-86715128 Msa0581330:three_prime_UTR
AGAAGTAAAATTCATAGCAA+AGG 0.544078 4_1:+86715022 None:intergenic
AAGGACATGCTATTCAGCAT+TGG 0.544403 4_1:-86717198 Msa0581330:CDS
ATTGATCCTGATTCAGTCGA+TGG 0.544517 4_1:+86717101 None:intergenic
ATACCTGTTCCTCCAAATCA+AGG 0.546149 4_1:+86715582 None:intergenic
ATGAAGACGATCAAGATAGT+GGG 0.546605 4_1:+86719858 None:intergenic
CTTTAACAGCAAAGTTGAAG+CGG 0.546937 4_1:-86716972 Msa0581330:intron
TTTCTCATTACTTCGAGCAT+CGG 0.547637 4_1:+86715091 None:intergenic
ATTTGGTAGGAACGATGGGA+TGG 0.551457 4_1:-86719736 Msa0581330:intron
ACGTATTCGAATTTATGGAC+TGG 0.551755 4_1:-86715300 Msa0581330:three_prime_UTR
ACAAAGCAAACAAGTTGCAA+TGG 0.552915 4_1:+86715153 None:intergenic
CAACTTGTTTGCTTTGTGTG+GGG 0.554374 4_1:-86715147 Msa0581330:three_prime_UTR
TGGAACATTAGATGATGTCT+GGG 0.559204 4_1:-86717431 Msa0581330:CDS
TTCACATTCCGAGTATTCCA+CGG 0.559393 4_1:+86718972 None:intergenic
CGTATCTGAAGCAGTGGAGA+AGG 0.559498 4_1:-86715993 Msa0581330:CDS
AGATTAAAGAAGCAGAAGAG+AGG 0.561135 4_1:-86715782 Msa0581330:intron
CAACAAATTTGGGATTATGT+GGG 0.563048 4_1:-86717136 Msa0581330:CDS
GAAGGTTGCTCATGAGCCAC+TGG 0.563743 4_1:+86715391 None:intergenic
CGGAATGTGAAGAAGTTGCT+GGG 0.571574 4_1:-86718960 Msa0581330:CDS
TTCTTGGGATTGGGTTGGAG+CGG 0.574169 4_1:+86720035 None:intergenic
AATGCCCTTGCGTCTCAAAG+TGG 0.575637 4_1:-86718680 Msa0581330:CDS
TACCACTGCACAAGGAAGGA+AGG 0.576990 4_1:+86720262 None:intergenic
GTACCTGACTTAACTGCCAC+AGG 0.577510 4_1:-86715205 Msa0581330:three_prime_UTR
GATTCTCGTCGTCGACTGAG+TGG 0.577788 4_1:+86720082 None:intergenic
CATTGAAGTCGATGAATGAG+AGG 0.577929 4_1:-86715607 Msa0581330:CDS
TAGAATTGACGGCAAGTCGA+AGG 0.578499 4_1:-86717077 Msa0581330:CDS
TATGTCCACTTTGAGACGCA+AGG 0.588521 4_1:+86718675 None:intergenic
AGAAAGAAATGTTGTTGCTG+AGG 0.588529 4_1:-86715918 Msa0581330:intron
AAGATGAGTTCGGGATCGAG+TGG 0.588594 4_1:+86720060 None:intergenic
TTGTGTGGGGATGTAATCCC+CGG 0.591669 4_1:-86715134 Msa0581330:three_prime_UTR
AGACTCAAATGGAATAAAGG+AGG 0.592588 4_1:-86715425 Msa0581330:CDS
GTGGATTTGTCGGATGTGGA+AGG 0.595592 4_1:-86717396 Msa0581330:intron
CCCAAGCAAACTGGACATGT+TGG 0.601547 4_1:+86718910 None:intergenic
TTGTGAATGTGGAAAATGGA+AGG 0.607125 4_1:+86720164 None:intergenic
AAGCTCCGTATCTGAAGCAG+TGG 0.608444 4_1:-86715999 Msa0581330:CDS
CAACTACCACTGCACAAGGA+AGG 0.608703 4_1:+86720258 None:intergenic
ATGTCCACTTTGAGACGCAA+GGG 0.620907 4_1:+86718676 None:intergenic
GACTCAAATGGAATAAAGGA+GGG 0.622185 4_1:-86715424 Msa0581330:CDS
GTGGACTCGGAGGAAGAACA+TGG 0.623052 4_1:+86720101 None:intergenic
ACAGCGAGGATGAAGAGAAG+AGG 0.623767 4_1:+86719925 None:intergenic
TGGGAGCTGAAATGTAAGGT+GGG 0.623977 4_1:+86715173 None:intergenic
TGAAGATTTAGAAGTTAATG+GGG 0.626069 4_1:-86716999 Msa0581330:CDS
TTGGGTCTGAATTGTGAATG+TGG 0.629630 4_1:+86720153 None:intergenic
TCACTGTATGTCTCTAGAAG+GGG 0.634476 4_1:-86717044 Msa0581330:CDS
CCAATTGAGATGTAAGAAGA+CGG 0.636618 4_1:+86716387 None:intergenic
AAACCGAATGAAATCATCGA+AGG 0.643428 4_1:+86719888 None:intergenic
AAAACAGAAAGTCTGGTCGA+AGG 0.644959 4_1:-86715351 Msa0581330:CDS
ACAGAAAGTCTGGTCGAAGG+CGG 0.651997 4_1:-86715348 Msa0581330:CDS
GCAATGGGAGCTGAAATGTA+AGG 0.665081 4_1:+86715169 None:intergenic
ATGGGAGCTGAAATGTAAGG+TGG 0.666276 4_1:+86715172 None:intergenic
TGTGAATGTGGAAAATGGAA+GGG 0.670214 4_1:+86720165 None:intergenic
GTTCCAACTACCACTGCACA+AGG 0.671019 4_1:+86720254 None:intergenic
ATTGAAGTCGATGAATGAGA+GGG 0.674240 4_1:-86715606 Msa0581330:CDS
CCTAAATTCACAGAACGCAG+AGG 0.674835 4_1:-86720009 Msa0581330:CDS
AGACTGGACCCTGATACAAG+TGG 0.679214 4_1:-86718735 Msa0581330:CDS
TGAAGACGATCAAGATAGTG+GGG 0.690985 4_1:+86719859 None:intergenic
ATTTCTGTACAACCAGCTGG+AGG 0.702761 4_1:+86718934 None:intergenic
AGAAATAATTAGGAACAGCG+AGG 0.702814 4_1:+86719911 None:intergenic
GGAGGGAACAGTCTTACCAG+TGG 0.721862 4_1:-86715407 Msa0581330:CDS
CGTCGACTGAGTGGACTCGG+AGG 0.727644 4_1:+86720091 None:intergenic
CAATGAGTAAGCCCTATCCG+GGG 0.744983 4_1:+86715117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATCAACAATTA+GGG + chr4_1:86715447-86715466 None:intergenic 10.0%
!! ATAATTATGAAATATTATCT+TGG - chr4_1:86716880-86716899 Msa0581330:intron 10.0%
!! TAATTATGAAATATTATCTT+GGG - chr4_1:86716881-86716900 Msa0581330:intron 10.0%
!!! TTTTTATTTTCTAAAAAACA+AGG - chr4_1:86717462-86717481 Msa0581330:CDS 10.0%
!! TATATAAATGACAATAAAAT+GGG + chr4_1:86717918-86717937 None:intergenic 10.0%
!! CAAAATTAAAATCAACAATT+AGG + chr4_1:86715448-86715467 None:intergenic 15.0%
!!! TGTTGATTTTAATTTTGATT+TGG - chr4_1:86715451-86715470 Msa0581330:CDS 15.0%
!!! ACTTTTTTTTTCTTTTTCAA+GGG + chr4_1:86715717-86715736 None:intergenic 15.0%
!!! TCAAATAAGTTATTTCAAAT+AGG - chr4_1:86715845-86715864 Msa0581330:intron 15.0%
!! TCAAGTAAATAGTATTAATA+AGG - chr4_1:86715972-86715991 Msa0581330:CDS 15.0%
!! CAAGTAAATAGTATTAATAA+GGG - chr4_1:86715973-86715992 Msa0581330:CDS 15.0%
!! ATAAATTTAAAAAACGACAA+AGG + chr4_1:86716123-86716142 None:intergenic 15.0%
!!! TTGTCGTTTTTTAAATTTAT+TGG - chr4_1:86716123-86716142 Msa0581330:intron 15.0%
!! TATTATTACACTTTAATCTT+TGG - chr4_1:86716604-86716623 Msa0581330:intron 15.0%
!!! AAGTATGTCTAAATAAATTT+TGG + chr4_1:86717175-86717194 None:intergenic 15.0%
!! CCAACTTAAATTAATAATTA+GGG + chr4_1:86717416-86717435 None:intergenic 15.0%
!!! CCTAATTATTAATTTAAGTT+GGG - chr4_1:86717414-86717433 Msa0581330:CDS 15.0%
!! TTTGTTTAACATATTAAGTA+GGG + chr4_1:86717890-86717909 None:intergenic 15.0%
!!! TTTTGTTTAACATATTAAGT+AGG + chr4_1:86717891-86717910 None:intergenic 15.0%
!! CTATATAAATGACAATAAAA+TGG + chr4_1:86717919-86717938 None:intergenic 15.0%
!!! CATTTTATTGTCATTTATAT+AGG - chr4_1:86717917-86717936 Msa0581330:intron 15.0%
!!! TTTTAATCTAGATATAAAGA+AGG - chr4_1:86717987-86718006 Msa0581330:intron 15.0%
!!! ATTATAATGTTAACTTGTTA+AGG + chr4_1:86718338-86718357 None:intergenic 15.0%
!! CATTTATAGAATAACTATAT+GGG + chr4_1:86718616-86718635 None:intergenic 15.0%
!! CATATAGTTATTCTATAAAT+GGG - chr4_1:86718615-86718634 Msa0581330:intron 15.0%
!! TCATAATACTAAAACAAAAA+TGG + chr4_1:86719152-86719171 None:intergenic 15.0%
!!! AGTAAAGTTGTTTTTTTTTT+TGG - chr4_1:86719513-86719532 Msa0581330:intron 15.0%
!! TTTAAATATGTGATCATTTA+GGG - chr4_1:86719565-86719584 Msa0581330:intron 15.0%
!! TTTATATATAGAGTTCGTTT+GGG + chr4_1:86714996-86715015 None:intergenic 20.0%
!!! ATTACAGAACTTTTTCAAAA+TGG + chr4_1:86715407-86715426 None:intergenic 20.0%
!!! GATTTTAATTTTGATTTGGT+AGG - chr4_1:86715455-86715474 Msa0581330:CDS 20.0%
!!! GACTTTTTTTTTCTTTTTCA+AGG + chr4_1:86715718-86715737 None:intergenic 20.0%
!! AATAGGACTTAAGTAAAAAT+AGG - chr4_1:86715862-86715881 Msa0581330:intron 20.0%
!!! TTAATGTGTTATTTTGTGTA+TGG - chr4_1:86715893-86715912 Msa0581330:intron 20.0%
!! TTGAAATGAAGCTTATATTT+AGG - chr4_1:86716023-86716042 Msa0581330:CDS 20.0%
!! TGAAATGAAGCTTATATTTA+GGG - chr4_1:86716024-86716043 Msa0581330:CDS 20.0%
!! TTCAAAAAAGACTTGTATTT+AGG - chr4_1:86716058-86716077 Msa0581330:intron 20.0%
!!! AAGGTATTAATTGATTATTG+AGG + chr4_1:86716104-86716123 None:intergenic 20.0%
!!! GAGAATATCATAATTTTGTT+TGG - chr4_1:86716911-86716930 Msa0581330:intron 20.0%
!! TTTATCTTTATACAAGAGTT+TGG + chr4_1:86717035-86717054 None:intergenic 20.0%
!!! ACTAAATGGATTTTAATATC+TGG + chr4_1:86717384-86717403 None:intergenic 20.0%
!! CCCTAATTATTAATTTAAGT+TGG - chr4_1:86717413-86717432 Msa0581330:CDS 20.0%
!! CCCAACTTAAATTAATAATT+AGG + chr4_1:86717417-86717436 None:intergenic 20.0%
!!! TATTTTCTAAAAAACAAGGA+AGG - chr4_1:86717466-86717485 Msa0581330:CDS 20.0%
!!! ATTTTCTAAAAAACAAGGAA+GGG - chr4_1:86717467-86717486 Msa0581330:CDS 20.0%
!! TGGAAATATTATTGTATTGA+TGG - chr4_1:86717660-86717679 Msa0581330:intron 20.0%
!! ACTTATGATGTTTATATTGT+AGG - chr4_1:86717701-86717720 Msa0581330:intron 20.0%
!!! ATTTTAGAACACAACAAATT+TGG - chr4_1:86718057-86718076 Msa0581330:intron 20.0%
!!! TTTTAGAACACAACAAATTT+GGG - chr4_1:86718058-86718077 Msa0581330:intron 20.0%
!!! ATTTTATGCTGATACTAATT+TGG - chr4_1:86718467-86718486 Msa0581330:intron 20.0%
!!! TTTTATGCTGATACTAATTT+GGG - chr4_1:86718468-86718487 Msa0581330:intron 20.0%
!! CCATTTATAGAATAACTATA+TGG + chr4_1:86718617-86718636 None:intergenic 20.0%
!! CCATATAGTTATTCTATAAA+TGG - chr4_1:86718614-86718633 Msa0581330:intron 20.0%
!! TCATTAAAAATTCAGAAATG+TGG - chr4_1:86719392-86719411 Msa0581330:intron 20.0%
!! TTAAACATGTAATGAGAATA+TGG + chr4_1:86719550-86719569 None:intergenic 20.0%
!! GTTTAAATATGTGATCATTT+AGG - chr4_1:86719564-86719583 Msa0581330:intron 20.0%
! CTTTATATATAGAGTTCGTT+TGG + chr4_1:86714997-86715016 None:intergenic 25.0%
!!! ATAGGTATAGTGTTTTGATT+AGG - chr4_1:86715494-86715513 Msa0581330:intron 25.0%
! ACATGACAAGTACAAATTTA+TGG + chr4_1:86715613-86715632 None:intergenic 25.0%
!!! GTTTTTTGTATAAGCTATCT+TGG - chr4_1:86715743-86715762 Msa0581330:intron 25.0%
! ACTTATTTGAGCTTATTTAC+TGG + chr4_1:86715835-86715854 None:intergenic 25.0%
! AAAGAGAGATATACGTAATA+AGG + chr4_1:86716153-86716172 None:intergenic 25.0%
! TCAAATGATGATCAAAATGT+AGG - chr4_1:86716179-86716198 Msa0581330:intron 25.0%
! CGGAAAGCAAAAATAAAATA+TGG + chr4_1:86716215-86716234 None:intergenic 25.0%
!!! TATTTTATTTTTGCTTTCCG+TGG - chr4_1:86716215-86716234 Msa0581330:intron 25.0%
! GTGTAATAATATGTCAAAAC+AGG + chr4_1:86716595-86716614 None:intergenic 25.0%
! ATTACACTTTAATCTTTGGT+TGG - chr4_1:86716608-86716627 Msa0581330:intron 25.0%
! TAAAGATAAAAGATGCAACA+TGG - chr4_1:86717045-86717064 Msa0581330:CDS 25.0%
! AAAGATAAAAGATGCAACAT+GGG - chr4_1:86717046-86717065 Msa0581330:CDS 25.0%
!!! ATCAGTTCTTTAATTTTCGT+TGG - chr4_1:86717843-86717862 Msa0581330:intron 25.0%
!!! TTATTTGCTTTTGTTTTGTC+AGG - chr4_1:86717940-86717959 Msa0581330:intron 25.0%
!!! TATTTGCTTTTGTTTTGTCA+GGG - chr4_1:86717941-86717960 Msa0581330:intron 25.0%
! AGTGAAGATTTAGAAGTTAA+TGG - chr4_1:86718203-86718222 Msa0581330:intron 25.0%
! GTGAAGATTTAGAAGTTAAT+GGG - chr4_1:86718204-86718223 Msa0581330:intron 25.0%
! TGAAGATTTAGAAGTTAATG+GGG - chr4_1:86718205-86718224 Msa0581330:intron 25.0%
!! ACCTTAACAAGTTTTTAACA+AGG - chr4_1:86718308-86718327 Msa0581330:intron 25.0%
! AGTGAAAAAAATTTCAAGGA+TGG + chr4_1:86718871-86718890 None:intergenic 25.0%
!!! CTTGAAATTTTTTTCACTGT+GGG - chr4_1:86718873-86718892 Msa0581330:intron 25.0%
!!! TTGAAATTTTTTTCACTGTG+GGG - chr4_1:86718874-86718893 Msa0581330:intron 25.0%
! AAGTGATGTAATTTATAGTG+TGG - chr4_1:86719000-86719019 Msa0581330:CDS 25.0%
! TTATGAATCCTTACTAATTG+AGG - chr4_1:86719166-86719185 Msa0581330:intron 25.0%
!!! TACACTTTTCTAGTTCATTT+TGG + chr4_1:86719262-86719281 None:intergenic 25.0%
! TAACTTCATTCCAAACAAAT+TGG + chr4_1:86719471-86719490 None:intergenic 25.0%
! TCTATACAAAGGATTAATGA+AGG + chr4_1:86719656-86719675 None:intergenic 25.0%
! ATTGGAAAACTTCTATACAA+AGG + chr4_1:86719667-86719686 None:intergenic 25.0%
!! CAATTTTATTGTTCTCTGAT+GGG - chr4_1:86719683-86719702 Msa0581330:CDS 25.0%
!!! ATGCATATCTGAAATTTTGA+TGG - chr4_1:86719977-86719996 Msa0581330:CDS 25.0%
! TGTACAATTGAGAATGATAT+TGG - chr4_1:86720142-86720161 Msa0581330:five_prime_UTR 25.0%
! AGAAGTAAAATTCATAGCAA+AGG + chr4_1:86720185-86720204 None:intergenic 25.0%
TGAATTGTGAATGTGGAAAA+TGG + chr4_1:86715047-86715066 None:intergenic 30.0%
AAGAACATGGTTTCTTTGAT+CGG + chr4_1:86715093-86715112 None:intergenic 30.0%
!! TGTGAATTTAGGGTTTTCTT+GGG + chr4_1:86715187-86715206 None:intergenic 30.0%
TCATCGAAGGAGAAATAATT+AGG + chr4_1:86715306-86715325 None:intergenic 30.0%
GCATTTCATACCTATTTCAA+TGG - chr4_1:86715541-86715560 Msa0581330:intron 30.0%
AAACTTCTTGCCATTGAAAT+AGG + chr4_1:86715554-86715573 None:intergenic 30.0%
AAACACTTATGAGACTGTTT+GGG + chr4_1:86715809-86715828 None:intergenic 30.0%
TAAACACTTATGAGACTGTT+TGG + chr4_1:86715810-86715829 None:intergenic 30.0%
TGAACACATCTATATGCAAA+AGG + chr4_1:86715934-86715953 None:intergenic 30.0%
CATATAGATGTGTTCAATTC+TGG - chr4_1:86715938-86715957 Msa0581330:CDS 30.0%
! AAAACAGGTTTTCATGGAAT+GGG + chr4_1:86716580-86716599 None:intergenic 30.0%
! TATGTCAAAACAGGTTTTCA+TGG + chr4_1:86716586-86716605 None:intergenic 30.0%
AAGAGTTATATTGCCTAACT+AGG - chr4_1:86716725-86716744 Msa0581330:intron 30.0%
CCAAATACGTTCTTAAACTT+TGG + chr4_1:86716842-86716861 None:intergenic 30.0%
CCAAAGTTTAAGAACGTATT+TGG - chr4_1:86716839-86716858 Msa0581330:intron 30.0%
! CTAGGTTGGAAAAAATTGAT+AGG + chr4_1:86717090-86717109 None:intergenic 30.0%
!!! CTATCAATTTTTTCCAACCT+AGG - chr4_1:86717088-86717107 Msa0581330:CDS 30.0%
GACATACTTCACTTATTGTT+CGG - chr4_1:86717186-86717205 Msa0581330:CDS 30.0%
TAGGGAGAAAATACACTAAA+TGG + chr4_1:86717398-86717417 None:intergenic 30.0%
!!! AACAAAAGCACTGGTTTTAT+TGG - chr4_1:86717628-86717647 Msa0581330:intron 30.0%
!!! AAGCCAACTTGTTTTATTTG+TGG - chr4_1:86717753-86717772 Msa0581330:intron 30.0%
GTTCCACAAATAAAACAAGT+TGG + chr4_1:86717759-86717778 None:intergenic 30.0%
! TGTATGATTTGTGGATTTGT+CGG - chr4_1:86717798-86717817 Msa0581330:intron 30.0%
! ACAACAAATTTGGGATTATG+TGG - chr4_1:86718067-86718086 Msa0581330:intron 30.0%
! CAACAAATTTGGGATTATGT+GGG - chr4_1:86718068-86718087 Msa0581330:intron 30.0%
!! TTCAACTTTGCTGTTAAAGA+AGG + chr4_1:86718231-86718250 None:intergenic 30.0%
!! GCCTTGTTAAAAACTTGTTA+AGG + chr4_1:86718312-86718331 None:intergenic 30.0%
!! TGTTTGCTGTGTAATTAACA+CGG - chr4_1:86718535-86718554 Msa0581330:intron 30.0%
GATGTGTAAACATTGTTTCA+TGG - chr4_1:86718668-86718687 Msa0581330:CDS 30.0%
GCATGTGAAAGAAAAATCAT+CGG + chr4_1:86718748-86718767 None:intergenic 30.0%
! CTCTGTCACTGATTAATTAA+TGG - chr4_1:86718767-86718786 Msa0581330:intron 30.0%
CCACAGTGAAAAAAATTTCA+AGG + chr4_1:86718875-86718894 None:intergenic 30.0%
!!! CCTTGAAATTTTTTTCACTG+TGG - chr4_1:86718872-86718891 Msa0581330:intron 30.0%
GTTTCTTTCACTTATGATGA+AGG - chr4_1:86719036-86719055 Msa0581330:intron 30.0%
AGCAAGCAATAAGGAAATAT+AGG + chr4_1:86719322-86719341 None:intergenic 30.0%
! AAACAAATTGGTAGCTTAAG+TGG + chr4_1:86719459-86719478 None:intergenic 30.0%
! ACTTAAGCTACCAATTTGTT+TGG - chr4_1:86719458-86719477 Msa0581330:intron 30.0%
CCATCAGAGAACAATAAAAT+TGG + chr4_1:86719685-86719704 None:intergenic 30.0%
! CCAATTTTATTGTTCTCTGA+TGG - chr4_1:86719682-86719701 Msa0581330:CDS 30.0%
GATAAAATGTCAGACTCAAA+TGG - chr4_1:86719768-86719787 Msa0581330:intron 30.0%
AGAACACGTATTCGAATTTA+TGG - chr4_1:86719899-86719918 Msa0581330:CDS 30.0%
!!! TATGGACTGGTTTAAGTTTT+TGG - chr4_1:86719917-86719936 Msa0581330:CDS 30.0%
!!! CATTAACTGTTAGTTTTTCG+TGG - chr4_1:86720269-86720288 Msa0581330:five_prime_UTR 30.0%
! ATATAGAGTTCGTTTGGGTT+TGG + chr4_1:86714991-86715010 None:intergenic 35.0%
TGTGAATGTGGAAAATGGAA+GGG + chr4_1:86715042-86715061 None:intergenic 35.0%
TTGTGAATGTGGAAAATGGA+AGG + chr4_1:86715043-86715062 None:intergenic 35.0%
!! TTTAGGGTTTTCTTGGGATT+GGG + chr4_1:86715181-86715200 None:intergenic 35.0%
!! ATTTAGGGTTTTCTTGGGAT+TGG + chr4_1:86715182-86715201 None:intergenic 35.0%
!! CTGTGAATTTAGGGTTTTCT+TGG + chr4_1:86715188-86715207 None:intergenic 35.0%
GTGAGAGAGAATTGGAATTA+GGG + chr4_1:86715260-86715279 None:intergenic 35.0%
AGAAATAATTAGGAACAGCG+AGG + chr4_1:86715296-86715315 None:intergenic 35.0%
TCTCCTTCGATGATTTCATT+CGG - chr4_1:86715313-86715332 Msa0581330:three_prime_UTR 35.0%
AAACCGAATGAAATCATCGA+AGG + chr4_1:86715319-86715338 None:intergenic 35.0%
! GATGATTTCATTCGGTTTTG+TGG - chr4_1:86715321-86715340 Msa0581330:three_prime_UTR 35.0%
ATGAAGACGATCAAGATAGT+GGG + chr4_1:86715349-86715368 None:intergenic 35.0%
TTCATCATCTTCTCTTCATC+AGG - chr4_1:86715364-86715383 Msa0581330:CDS 35.0%
!!! TTTTGATTTGGTAGGAACGA+TGG - chr4_1:86715463-86715482 Msa0581330:CDS 35.0%
!! TTTGATTTGGTAGGAACGAT+GGG - chr4_1:86715464-86715483 Msa0581330:CDS 35.0%
!! AGGTAAGTAATAACGGGTTT+GGG - chr4_1:86715584-86715603 Msa0581330:intron 35.0%
!! CAACTTAGTTTGCAGCTTAT+AGG - chr4_1:86715663-86715682 Msa0581330:intron 35.0%
AAGCTATCTTGGACATCTTA+TGG - chr4_1:86715754-86715773 Msa0581330:intron 35.0%
TGAGGTGATTATGATTGTGT+GGG - chr4_1:86716396-86716415 Msa0581330:CDS 35.0%
!! ATTGTGTGGGTTGATGTTTA+TGG - chr4_1:86716409-86716428 Msa0581330:intron 35.0%
! AAACAGGTTTTCATGGAATG+GGG + chr4_1:86716579-86716598 None:intergenic 35.0%
! CAAAACAGGTTTTCATGGAA+TGG + chr4_1:86716581-86716600 None:intergenic 35.0%
! ATTAGACTCTTAGAGCATCA+TGG - chr4_1:86716638-86716657 Msa0581330:intron 35.0%
! TTAGACTCTTAGAGCATCAT+GGG - chr4_1:86716639-86716658 Msa0581330:intron 35.0%
ATGATTCTTCATGAGAAGCT+TGG - chr4_1:86716678-86716697 Msa0581330:intron 35.0%
CTCACGATAATATCCTAGTT+AGG + chr4_1:86716741-86716760 None:intergenic 35.0%
CTAACTAGGATATTATCGTG+AGG - chr4_1:86716739-86716758 Msa0581330:intron 35.0%
AACGAGTTTGAAAGTTTCTC+AGG - chr4_1:86716795-86716814 Msa0581330:intron 35.0%
!!! ACACTTTTTAAGTCCCAAAG+TGG - chr4_1:86716955-86716974 Msa0581330:intron 35.0%
!!! TTTTTAAGTCCCAAAGTGGA+TGG - chr4_1:86716959-86716978 Msa0581330:intron 35.0%
ACCTTTATACCATCCACTTT+GGG + chr4_1:86716971-86716990 None:intergenic 35.0%
TACCTTTATACCATCCACTT+TGG + chr4_1:86716972-86716991 None:intergenic 35.0%
ATGAGCTTAATATCCTAGGT+TGG + chr4_1:86717104-86717123 None:intergenic 35.0%
ATACTTCACTTATTGTTCGG+AGG - chr4_1:86717189-86717208 Msa0581330:CDS 35.0%
CCAGAATGCATTGAATTTCT+GGG - chr4_1:86717236-86717255 Msa0581330:intron 35.0%
! AATGCATTGAATTTCTGGGA+AGG - chr4_1:86717240-86717259 Msa0581330:intron 35.0%
AAGGTAACAACTTCAACACA+TGG - chr4_1:86717338-86717357 Msa0581330:intron 35.0%
TGGAATGTGCAATGATAAGT+TGG + chr4_1:86717364-86717383 None:intergenic 35.0%
! TTCTAAAAAACAAGGAAGGG+CGG - chr4_1:86717470-86717489 Msa0581330:CDS 35.0%
CATCCTGTTGTTGACATAAT+CGG + chr4_1:86717731-86717750 None:intergenic 35.0%
TGGAACATTAGATGATGTCT+GGG - chr4_1:86717773-86717792 Msa0581330:intron 35.0%
! CAGGATCAATCTAGAATTGA+CGG - chr4_1:86718116-86718135 Msa0581330:intron 35.0%
! TTCACTGTATGTCTCTAGAA+GGG - chr4_1:86718159-86718178 Msa0581330:intron 35.0%
CTTTAACAGCAAAGTTGAAG+CGG - chr4_1:86718232-86718251 Msa0581330:intron 35.0%
!! AAAAAGCTTCTCTGAAATCG+TGG - chr4_1:86718269-86718288 Msa0581330:intron 35.0%
AGCAAACAAAATCATACCAC+AGG + chr4_1:86718523-86718542 None:intergenic 35.0%
!! GTTTGCTGTGTAATTAACAC+GGG - chr4_1:86718536-86718555 Msa0581330:intron 35.0%
! TTTGCTGTGTAATTAACACG+GGG - chr4_1:86718537-86718556 Msa0581330:intron 35.0%
TGTCATGTAGACATAGAGAT+AGG - chr4_1:86718590-86718609 Msa0581330:intron 35.0%
ACAACCAAATGTGTGACATT+AGG + chr4_1:86718694-86718713 None:intergenic 35.0%
! TAATGGACATGAACAGATTG+TGG - chr4_1:86718784-86718803 Msa0581330:intron 35.0%
CCAATTGAGATGTAAGAAGA+CGG + chr4_1:86718820-86718839 None:intergenic 35.0%
CTAGTTTCTTGAATGTCAAC+TGG - chr4_1:86718977-86718996 Msa0581330:CDS 35.0%
TTCACTTATGATGAAGGCTT+TGG - chr4_1:86719042-86719061 Msa0581330:intron 35.0%
TCACTTATGATGAAGGCTTT+GGG - chr4_1:86719043-86719062 Msa0581330:intron 35.0%
AATTGCTATGATACTCGCAA+TGG - chr4_1:86719068-86719087 Msa0581330:intron 35.0%
ATTGCTATGATACTCGCAAT+GGG - chr4_1:86719069-86719088 Msa0581330:intron 35.0%
ACTTCTTGCCTCAATTAGTA+AGG + chr4_1:86719177-86719196 None:intergenic 35.0%
AGAAAGAAATGTTGTTGCTG+AGG - chr4_1:86719286-86719305 Msa0581330:intron 35.0%
CAGAGTTAAAGCAAGCAATA+AGG + chr4_1:86719331-86719350 None:intergenic 35.0%
AGATTAAAGAAGCAGAAGAG+AGG - chr4_1:86719422-86719441 Msa0581330:intron 35.0%
ATTGAAGTCGATGAATGAGA+GGG - chr4_1:86719598-86719617 Msa0581330:intron 35.0%
GTCAGACTCAAATGGAATAA+AGG - chr4_1:86719776-86719795 Msa0581330:intron 35.0%
AGACTCAAATGGAATAAAGG+AGG - chr4_1:86719779-86719798 Msa0581330:intron 35.0%
GACTCAAATGGAATAAAGGA+GGG - chr4_1:86719780-86719799 Msa0581330:intron 35.0%
AGCAAGAAAAACAGAAAGTC+TGG - chr4_1:86719846-86719865 Msa0581330:CDS 35.0%
ACGTATTCGAATTTATGGAC+TGG - chr4_1:86719904-86719923 Msa0581330:CDS 35.0%
!!! GACTGGTTTAAGTTTTTGGA+GGG - chr4_1:86719921-86719940 Msa0581330:CDS 35.0%
GATATGCATTAGAACACTCT+TGG + chr4_1:86719966-86719985 None:intergenic 35.0%
CAAAGCAAACAAGTTGCAAT+GGG + chr4_1:86720053-86720072 None:intergenic 35.0%
ACAAAGCAAACAAGTTGCAA+TGG + chr4_1:86720054-86720073 None:intergenic 35.0%
TTTCTCATTACTTCGAGCAT+CGG + chr4_1:86720116-86720135 None:intergenic 35.0%
TTGGGTCTGAATTGTGAATG+TGG + chr4_1:86715054-86715073 None:intergenic 40.0%
GGAGAAAGAATAACGCGTTT+GGG + chr4_1:86715072-86715091 None:intergenic 40.0%
CTCTGCGTTCTGTGAATTTA+GGG + chr4_1:86715197-86715216 None:intergenic 40.0%
AGAATTGGAATTAGGGAGAG+AGG + chr4_1:86715253-86715272 None:intergenic 40.0%
GGTGAGAGAGAATTGGAATT+AGG + chr4_1:86715261-86715280 None:intergenic 40.0%
TGAAGACGATCAAGATAGTG+GGG + chr4_1:86715348-86715367 None:intergenic 40.0%
GATGAAGACGATCAAGATAG+TGG + chr4_1:86715350-86715369 None:intergenic 40.0%
CCTGCTGAGGTAAGTAATAA+CGG - chr4_1:86715577-86715596 Msa0581330:intron 40.0%
CTGCTGAGGTAAGTAATAAC+GGG - chr4_1:86715578-86715597 Msa0581330:intron 40.0%
!! GAGGTAAGTAATAACGGGTT+TGG - chr4_1:86715583-86715602 Msa0581330:intron 40.0%
TTTGCTTTCCGTGGAATACT+CGG - chr4_1:86716224-86716243 Msa0581330:intron 40.0%
TTCACATTCCGAGTATTCCA+CGG + chr4_1:86716235-86716254 None:intergenic 40.0%
CTGAGGTGATTATGATTGTG+TGG - chr4_1:86716395-86716414 Msa0581330:CDS 40.0%
TGCGTATTCCACTTGTATCA+GGG + chr4_1:86716480-86716499 None:intergenic 40.0%
! CTTAGAGCATCATGGGTATT+AGG - chr4_1:86716646-86716665 Msa0581330:intron 40.0%
TCCCAAAGTGGATGGTATAA+AGG - chr4_1:86716967-86716986 Msa0581330:intron 40.0%
GCTCATGAGCTTAATATCCT+AGG + chr4_1:86717108-86717127 None:intergenic 40.0%
GCCAGAATGCATTGAATTTC+TGG - chr4_1:86717235-86717254 Msa0581330:intron 40.0%
CCCAGAAATTCAATGCATTC+TGG + chr4_1:86717239-86717258 None:intergenic 40.0%
! TCGTGACAAGGTATTCGAAT+TGG + chr4_1:86717270-86717289 None:intergenic 40.0%
! TTTCAAGTGAAGTCGTGACA+AGG + chr4_1:86717282-86717301 None:intergenic 40.0%
AAGTTGTTACCTTGACCATG+AGG + chr4_1:86717331-86717350 None:intergenic 40.0%
!!! GGTTTTATTGGTAATGCACG+TGG - chr4_1:86717640-86717659 Msa0581330:intron 40.0%
GTGGAACATTAGATGATGTC+TGG - chr4_1:86717772-86717791 Msa0581330:intron 40.0%
GTCTGGGTTTGTATGATTTG+TGG - chr4_1:86717789-86717808 Msa0581330:intron 40.0%
ATTTGTGGATTTGTCGGATG+TGG - chr4_1:86717804-86717823 Msa0581330:intron 40.0%
CAGGGAAGACTTTAATGCTA+TGG - chr4_1:86717959-86717978 Msa0581330:intron 40.0%
AAGGACATGCTATTCAGCAT+TGG - chr4_1:86718006-86718025 Msa0581330:intron 40.0%
! TTATGTCCATCGACTGAATC+AGG - chr4_1:86718097-86718116 Msa0581330:intron 40.0%
ATTGATCCTGATTCAGTCGA+TGG + chr4_1:86718106-86718125 None:intergenic 40.0%
GTTCACTGTATGTCTCTAGA+AGG - chr4_1:86718158-86718177 Msa0581330:intron 40.0%
! TCACTGTATGTCTCTAGAAG+GGG - chr4_1:86718160-86718179 Msa0581330:intron 40.0%
!! TTCTCTGAAATCGTGGAGTT+AGG - chr4_1:86718276-86718295 Msa0581330:intron 40.0%
!! TCTCTGAAATCGTGGAGTTA+GGG - chr4_1:86718277-86718296 Msa0581330:intron 40.0%
CTATGTCTACATGACAGTAC+AGG + chr4_1:86718586-86718605 None:intergenic 40.0%
TGTTTACACATCACGTGTGA+CGG + chr4_1:86718660-86718679 None:intergenic 40.0%
ATGGCCTAATGTCACACATT+TGG - chr4_1:86718687-86718706 Msa0581330:CDS 40.0%
CCGTCTTCTTACATCTCAAT+TGG - chr4_1:86718817-86718836 Msa0581330:intron 40.0%
CATTCTGCCCTTAGGTTAAT+CGG - chr4_1:86719365-86719384 Msa0581330:intron 40.0%
TGAGCTTCCGATTAACCTAA+GGG + chr4_1:86719375-86719394 None:intergenic 40.0%
ATGAGCTTCCGATTAACCTA+AGG + chr4_1:86719376-86719395 None:intergenic 40.0%
AAGAAGCAGAAGAGAGGTAA+TGG - chr4_1:86719428-86719447 Msa0581330:intron 40.0%
CATTGAAGTCGATGAATGAG+AGG - chr4_1:86719597-86719616 Msa0581330:intron 40.0%
ATACCTGTTCCTCCAAATCA+AGG + chr4_1:86719625-86719644 None:intergenic 40.0%
!!! CTGTTTTTCTTGCTGTTTCC+AGG + chr4_1:86719840-86719859 None:intergenic 40.0%
AAAACAGAAAGTCTGGTCGA+AGG - chr4_1:86719853-86719872 Msa0581330:CDS 40.0%
!!! GGACTGGTTTAAGTTTTTGG+AGG - chr4_1:86719920-86719939 Msa0581330:CDS 40.0%
! TGCAACTTGTTTGCTTTGTG+TGG - chr4_1:86720055-86720074 Msa0581330:CDS 40.0%
! GCAACTTGTTTGCTTTGTGT+GGG - chr4_1:86720056-86720075 Msa0581330:CDS 40.0%
! CAACTTGTTTGCTTTGTGTG+GGG - chr4_1:86720057-86720076 Msa0581330:CDS 40.0%
ATCAATGAGTAAGCCCTATC+CGG + chr4_1:86720092-86720111 None:intergenic 40.0%
! TAGAGTTCGTTTGGGTTTGG+CGG + chr4_1:86714988-86715007 None:intergenic 45.0%
CGGAGAAAGAATAACGCGTT+TGG + chr4_1:86715073-86715092 None:intergenic 45.0%
CCTCTGCGTTCTGTGAATTT+AGG + chr4_1:86715198-86715217 None:intergenic 45.0%
CCTAAATTCACAGAACGCAG+AGG - chr4_1:86715195-86715214 Msa0581330:three_prime_UTR 45.0%
GAGAAGAGGTGAGAGAGAAT+TGG + chr4_1:86715268-86715287 None:intergenic 45.0%
ATTTGGTAGGAACGATGGGA+TGG - chr4_1:86715468-86715487 Msa0581330:CDS 45.0%
! CAAGAAGTTTTCTCCTGCTG+AGG - chr4_1:86715564-86715583 Msa0581330:intron 45.0%
CCGTTATTACTTACCTCAGC+AGG + chr4_1:86715580-86715599 None:intergenic 45.0%
TCGGAATGTGAAGAAGTTGC+TGG - chr4_1:86716243-86716262 Msa0581330:intron 45.0%
CGGAATGTGAAGAAGTTGCT+GGG - chr4_1:86716244-86716263 Msa0581330:intron 45.0%
ATTTCTGTACAACCAGCTGG+AGG + chr4_1:86716273-86716292 None:intergenic 45.0%
! GGTATTTCTGTACAACCAGC+TGG + chr4_1:86716276-86716295 None:intergenic 45.0%
! ACCAACATGTCCAGTTTGCT+TGG - chr4_1:86716293-86716312 Msa0581330:intron 45.0%
! CCAACATGTCCAGTTTGCTT+GGG - chr4_1:86716294-86716313 Msa0581330:intron 45.0%
TGAAACTCACCCAAGCAAAC+TGG + chr4_1:86716306-86716325 None:intergenic 45.0%
CCAAGATCCAAGCAAACAGA+GGG + chr4_1:86716346-86716365 None:intergenic 45.0%
ACCAAGATCCAAGCAAACAG+AGG + chr4_1:86716347-86716366 None:intergenic 45.0%
CGCTGTCTTCAATTTCTCTG+AGG - chr4_1:86716378-86716397 Msa0581330:CDS 45.0%
TGTTTGAATCCCAGAGAGAC+TGG - chr4_1:86716453-86716472 Msa0581330:intron 45.0%
GTGCGTATTCCACTTGTATC+AGG + chr4_1:86716481-86716500 None:intergenic 45.0%
!! CGCAAGGGCATTGAAATGAA+TGG + chr4_1:86716516-86716535 None:intergenic 45.0%
!! ATGTCCACTTTGAGACGCAA+GGG + chr4_1:86716531-86716550 None:intergenic 45.0%
!! TATGTCCACTTTGAGACGCA+AGG + chr4_1:86716532-86716551 None:intergenic 45.0%
GTGGACATATTTGTCTTGCC+AGG - chr4_1:86716543-86716562 Msa0581330:intron 45.0%
AAAAGATGCAACATGGGCGA+TGG - chr4_1:86717052-86717071 Msa0581330:CDS 45.0%
AAAGATGCAACATGGGCGAT+GGG - chr4_1:86717053-86717072 Msa0581330:CDS 45.0%
ACATGGGCGATGGGAAAAAA+TGG - chr4_1:86717062-86717081 Msa0581330:CDS 45.0%
TGTTACCTTGACCATGAGGA+GGG + chr4_1:86717327-86717346 None:intergenic 45.0%
TTGTTACCTTGACCATGAGG+AGG + chr4_1:86717328-86717347 None:intergenic 45.0%
ACAAGGAAGGGCGGAAATTA+AGG - chr4_1:86717479-86717498 Msa0581330:CDS 45.0%
! TGCTTCGCTAACAAAAGCAC+TGG - chr4_1:86717619-86717638 Msa0581330:intron 45.0%
! CTGCCGATTATGTCAACAAC+AGG - chr4_1:86717725-86717744 Msa0581330:intron 45.0%
TAGAATTGACGGCAAGTCGA+AGG - chr4_1:86718127-86718146 Msa0581330:intron 45.0%
TTGAAGCGGTATGTTTCTCG+TGG - chr4_1:86718246-86718265 Msa0581330:intron 45.0%
AGCGACAAGCTCACTTTAAG+TGG - chr4_1:86718407-86718426 Msa0581330:intron 45.0%
AAATCATACCACAGGTGCAC+AGG + chr4_1:86718515-86718534 None:intergenic 45.0%
! AACACGGGGCTTTATGCATA+AGG - chr4_1:86718551-86718570 Msa0581330:intron 45.0%
CTTCTCCACTGCTTCAGATA+CGG + chr4_1:86719213-86719232 None:intergenic 45.0%
AGACACTTCATTCTGCCCTT+AGG - chr4_1:86719357-86719376 Msa0581330:intron 45.0%
GAATGAGAGGGTCCTTGATT+TGG - chr4_1:86719610-86719629 Msa0581330:intron 45.0%
!! TTCTTGCTGTTTCCAGGAGA+AGG + chr4_1:86719834-86719853 None:intergenic 45.0%
TTTCCTGTGGCAGTTAAGTC+AGG + chr4_1:86720005-86720024 None:intergenic 45.0%
!!! AGGTGGGCTAATTTTTCCTG+TGG + chr4_1:86720018-86720037 None:intergenic 45.0%
TGGGAGCTGAAATGTAAGGT+GGG + chr4_1:86720034-86720053 None:intergenic 45.0%
ATGGGAGCTGAAATGTAAGG+TGG + chr4_1:86720035-86720054 None:intergenic 45.0%
GCAATGGGAGCTGAAATGTA+AGG + chr4_1:86720038-86720057 None:intergenic 45.0%
TCAATGAGTAAGCCCTATCC+GGG + chr4_1:86720091-86720110 None:intergenic 45.0%
TTCCTTCCTTCCTTGTGCAG+TGG - chr4_1:86714940-86714959 Msa0581330:three_prime_UTR 50.0%
TACCACTGCACAAGGAAGGA+AGG + chr4_1:86714945-86714964 None:intergenic 50.0%
CAACTACCACTGCACAAGGA+AGG + chr4_1:86714949-86714968 None:intergenic 50.0%
CTTCCTTGTGCAGTGGTAGT+TGG - chr4_1:86714947-86714966 Msa0581330:three_prime_UTR 50.0%
GTTCCAACTACCACTGCACA+AGG + chr4_1:86714953-86714972 None:intergenic 50.0%
! AGAGTTCGTTTGGGTTTGGC+GGG + chr4_1:86714987-86715006 None:intergenic 50.0%
AAGATGAGTTCGGGATCGAG+TGG + chr4_1:86715147-86715166 None:intergenic 50.0%
TGGAGCGGAGAAGATGAGTT+CGG + chr4_1:86715157-86715176 None:intergenic 50.0%
!! TTCTTGGGATTGGGTTGGAG+CGG + chr4_1:86715172-86715191 None:intergenic 50.0%
! GGGTTTTCTTGGGATTGGGT+TGG + chr4_1:86715177-86715196 None:intergenic 50.0%
ACAGCGAGGATGAAGAGAAG+AGG + chr4_1:86715282-86715301 None:intergenic 50.0%
GGAACGATGGGATGGAAGAT+AGG - chr4_1:86715476-86715495 Msa0581330:CDS 50.0%
CCCAAGCAAACTGGACATGT+TGG + chr4_1:86716297-86716316 None:intergenic 50.0%
ATCGTGACCCTCTGTTTGCT+TGG - chr4_1:86716336-86716355 Msa0581330:intron 50.0%
CCCTCTGTTTGCTTGGATCT+TGG - chr4_1:86716343-86716362 Msa0581330:intron 50.0%
TATCAGGGTCCAGTCTCTCT+GGG + chr4_1:86716465-86716484 None:intergenic 50.0%
AGACTGGACCCTGATACAAG+TGG - chr4_1:86716469-86716488 Msa0581330:intron 50.0%
AATGCCCTTGCGTCTCAAAG+TGG - chr4_1:86716524-86716543 Msa0581330:intron 50.0%
GAATGGGGAAGCTACATACC+TGG + chr4_1:86716564-86716583 None:intergenic 50.0%
!! TCAATGCATTCTGGCTCGCT+TGG + chr4_1:86717230-86717249 None:intergenic 50.0%
TTACCTTGACCATGAGGAGG+GGG + chr4_1:86717325-86717344 None:intergenic 50.0%
GTTACCTTGACCATGAGGAG+GGG + chr4_1:86717326-86717345 None:intergenic 50.0%
GTGGATTTGTCGGATGTGGA+AGG - chr4_1:86717808-86717827 Msa0581330:intron 50.0%
AACAAAAGCCTGTGCACCTG+TGG - chr4_1:86718504-86718523 Msa0581330:intron 50.0%
! AAGCTCCGTATCTGAAGCAG+TGG - chr4_1:86719205-86719224 Msa0581330:intron 50.0%
! CGTATCTGAAGCAGTGGAGA+AGG - chr4_1:86719211-86719230 Msa0581330:intron 50.0%
!! TGAGAGGGTCCTTGATTTGG+AGG - chr4_1:86719613-86719632 Msa0581330:intron 50.0%
!! GGTCCTTGATTTGGAGGAAC+AGG - chr4_1:86719619-86719638 Msa0581330:intron 50.0%
ACAGAAAGTCTGGTCGAAGG+CGG - chr4_1:86719856-86719875 Msa0581330:CDS 50.0%
GTACCTGACTTAACTGCCAC+AGG - chr4_1:86719999-86720018 Msa0581330:CDS 50.0%
TTGTGTGGGGATGTAATCCC+CGG - chr4_1:86720070-86720089 Msa0581330:CDS 50.0%
CAATGAGTAAGCCCTATCCG+GGG + chr4_1:86720090-86720109 None:intergenic 50.0%
GTGGACTCGGAGGAAGAACA+TGG + chr4_1:86715106-86715125 None:intergenic 55.0%
! GATTCTCGTCGTCGACTGAG+TGG + chr4_1:86715125-86715144 None:intergenic 55.0%
GGAGCGGAGAAGATGAGTTC+GGG + chr4_1:86715156-86715175 None:intergenic 55.0%
! GAGAGGAGTGTGAAGCGCTT+CGG + chr4_1:86715236-86715255 None:intergenic 55.0%
GTATCAGGGTCCAGTCTCTC+TGG + chr4_1:86716466-86716485 None:intergenic 55.0%
TACCTTGACCATGAGGAGGG+GGG + chr4_1:86717324-86717343 None:intergenic 55.0%
GTGGAGAAGGCTGCAACTTC+TGG - chr4_1:86719224-86719243 Msa0581330:intron 55.0%
GGAGGGAACAGTCTTACCAG+TGG - chr4_1:86719797-86719816 Msa0581330:intron 55.0%
GAAGGTTGCTCATGAGCCAC+TGG + chr4_1:86719816-86719835 None:intergenic 55.0%
GCTCATGAGCAACCTTCTCC+TGG - chr4_1:86719819-86719838 Msa0581330:intron 55.0%
TGGGGATGTAATCCCCGGAT+AGG - chr4_1:86720075-86720094 Msa0581330:CDS 55.0%
GGGGATGTAATCCCCGGATA+GGG - chr4_1:86720076-86720095 Msa0581330:CDS 55.0%
! CGTCGTCGACTGAGTGGACT+CGG + chr4_1:86715119-86715138 None:intergenic 60.0%
GGCTGCAACTTCTGGCATGC+TGG - chr4_1:86719232-86719251 Msa0581330:intron 60.0%
! CGTCGACTGAGTGGACTCGG+AGG + chr4_1:86715116-86715135 None:intergenic 65.0%
GTTGCTGGGACTCCTCCAGC+TGG - chr4_1:86716258-86716277 Msa0581330:intron 65.0%
! AGGAGGGGGGTGCAAAGGCA+AGG + chr4_1:86717311-86717330 None:intergenic 65.0%
! CCATGAGGAGGGGGGTGCAA+AGG + chr4_1:86717316-86717335 None:intergenic 65.0%
CCTTTGCACCCCCCTCCTCA+TGG - chr4_1:86717313-86717332 Msa0581330:intron 65.0%
CACCCCCCTCCTCATGGTCA+AGG - chr4_1:86717319-86717338 Msa0581330:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86714933 86720293 86714933 ID=Msa0581330;Name=Msa0581330
chr4_1 mRNA 86714933 86720293 86714933 ID=Msa0581330-mRNA-1;Parent=Msa0581330;Name=Msa0581330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=172|1|1|1|1|1|11|409|480
chr4_1 exon 86714933 86715500 86714933 ID=Msa0581330-mRNA-1:exon:32135;Parent=Msa0581330-mRNA-1
chr4_1 exon 86715586 86715640 86715586 ID=Msa0581330-mRNA-1:exon:32134;Parent=Msa0581330-mRNA-1
chr4_1 exon 86715783 86715847 86715783 ID=Msa0581330-mRNA-1:exon:32133;Parent=Msa0581330-mRNA-1
chr4_1 exon 86715919 86716062 86715919 ID=Msa0581330-mRNA-1:exon:32132;Parent=Msa0581330-mRNA-1
chr4_1 exon 86716373 86716426 86716373 ID=Msa0581330-mRNA-1:exon:32131;Parent=Msa0581330-mRNA-1
chr4_1 exon 86716973 86717228 86716973 ID=Msa0581330-mRNA-1:exon:32130;Parent=Msa0581330-mRNA-1
chr4_1 exon 86717397 86717503 86717397 ID=Msa0581330-mRNA-1:exon:32129;Parent=Msa0581330-mRNA-1
chr4_1 exon 86718662 86718759 86718662 ID=Msa0581330-mRNA-1:exon:32128;Parent=Msa0581330-mRNA-1
chr4_1 exon 86718911 86719025 86718911 ID=Msa0581330-mRNA-1:exon:32127;Parent=Msa0581330-mRNA-1
chr4_1 exon 86719641 86719749 86719641 ID=Msa0581330-mRNA-1:exon:32126;Parent=Msa0581330-mRNA-1
chr4_1 exon 86719841 86720293 86719841 ID=Msa0581330-mRNA-1:exon:32125;Parent=Msa0581330-mRNA-1
chr4_1 five_prime_UTR 86720122 86720293 86720122 ID=Msa0581330-mRNA-1:five_prime_utr;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86719841 86720121 86719841 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86719641 86719749 86719641 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86718911 86719025 86718911 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86718662 86718759 86718662 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86717397 86717503 86717397 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86716973 86717228 86716973 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86716373 86716426 86716373 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86715919 86716062 86715919 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86715783 86715847 86715783 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86715586 86715640 86715586 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 CDS 86715342 86715500 86715342 ID=Msa0581330-mRNA-1:cds;Parent=Msa0581330-mRNA-1
chr4_1 three_prime_UTR 86714933 86715341 86714933 ID=Msa0581330-mRNA-1:three_prime_utr;Parent=Msa0581330-mRNA-1
Gene Sequence

>Msa0581330

ATGTTCTTCCTCCGAGTCCACTCAGTCGACGACGAGAATCCACTCGATCCCGAACTCATCTTCTCCGCTCCAACCCAATCCCAAGAAAACCCTAAATTCACAGAACGCAGAGGCGTTCTTCATCTCTTCCGAAGCGCTTCACACTCCTCTCTCCCTAATTCCAATTCTCTCTCACCTCTTCTCTTCATCCTCGCTGTTCCTAATTATTTCTCCTTCGATGATTTCATTCGGTTTTGTGGTCCCCACTATCTTGATCGTCTTCATCATCTTCTCTTCATCAGGAACGATGGGATGGAAGATAGGTATAGTGTTTTGATTAGGTTTGATGATCAGCTTGCTGCTGATGCATTTCATACCTATTTCAATGGCAAGAAGTTTTCTCCTGCTGAGGCAGAGATATGCCATATTTTATTTTTGCTTTCCGTGGAATACTCGGAATGTGAAGAAGTTGCTGGGACTCCTCCAGCTGGTTGTACAGAAATACCAACATGTCCAGTTTGCTTGGAGAGACTGGACCCTGATACAAGTGGAATACGCACAACACTTTGTGACCATTCATTTCAATGCCCTTGCGTCTCAAAGTGGACATATTTGTCTTGCCAGGTCTGCCGATTATGTCAACAACAGGATGAGAAGCCAACTTGTTTTATTTGTGGAACATTAGATGATGTCTGGGTTTGTATGATTTGTGGATTTGTCGGATGTGGAAGATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAGAACACAACAAATTTGGGATTATGTGGGTGACAATTATGTCCATCGACTGAATCAGGATCAATCTAGAATTGACGGCAAGTCGAAGGAGATGCATGTTCACTGTATGTCTCTAGAAGGGGATTGTGACACATGTGAATGTAGTGAAGATTTAGAAGTTAATGGGGCCTTCTTTAACAGCAAAGTTGAAGCGATTGTGGATGAATACAACCGTCTTCTTACATCTCAATTGGAGACTCAAAGACAATATTATGAATCCTTACTAATTGAGGCAAGAAGTAAAGAAGAAAGCTCCGTATCTGAAGCAGTGGAGAAGGCTGCAACTTCTGGCATGCTGGATATCCAAAATGAACTAGAAAAGTGTACAGAAGAAAGAAATGTTGTTGCTGAGGTTAATCGGAAGCTCATTAAAAATTCAGAAATGTGGCGAAAGAAGATTAAAGAAGCAGAAGAGAGGGAAGCTACATCATTGAAGTCGATGAATGAGAGGGTCCTTGATTTGGAGGAACAGATAAGAGATATCACGATTTTTCTACAAGCACAAAAAACAATTGATAAAATGTCAGACTCAAATGGAATAAAGGAGGGAACAGTCTTACCAGTGGCTCATGAGCAACCTTCTCCTGGAAACAGCAAGAAAAACAGAAAGTCTGGTCGAAGGCGGCGTTAG

Protein sequence

>Msa0581330

MFFLRVHSVDDENPLDPELIFSAPTQSQENPKFTERRGVLHLFRSASHSSLPNSNSLSPLLFILAVPNYFSFDDFIRFCGPHYLDRLHHLLFIRNDGMEDRYSVLIRFDDQLAADAFHTYFNGKKFSPAEAEICHILFLLSVEYSECEEVAGTPPAGCTEIPTCPVCLERLDPDTSGIRTTLCDHSFQCPCVSKWTYLSCQVCRLCQQQDEKPTCFICGTLDDVWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFRTQQIWDYVGDNYVHRLNQDQSRIDGKSKEMHVHCMSLEGDCDTCECSEDLEVNGAFFNSKVEAIVDEYNRLLTSQLETQRQYYESLLIEARSKEESSVSEAVEKAATSGMLDIQNELEKCTEERNVVAEVNRKLIKNSEMWRKKIKEAEEREATSLKSMNERVLDLEEQIRDITIFLQAQKTIDKMSDSNGIKEGTVLPVAHEQPSPGNSKKNRKSGRRRR*