AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331980 MtrunA17_Chr4g0064091 97.500 480 11 1 1 480 1 479 0.0 979
Msa1331980 MtrunA17_Chr2g0333591 48.252 429 211 6 27 455 27 444 1.44e-144 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331980 AT2G42160.1 61.179 492 175 6 1 480 1 488 0.0 629
Msa1331980 AT2G42160.2 62.045 440 153 4 1 429 1 437 0.0 577
Msa1331980 AT2G42160.3 62.129 404 139 4 1 393 1 401 0.0 531
Msa1331980 AT2G26000.3 41.416 466 252 9 27 480 22 478 7.83e-129 382
Msa1331980 AT2G26000.2 41.416 466 252 9 27 480 22 478 7.83e-129 382
Msa1331980 AT2G26000.1 39.056 466 245 10 27 480 22 460 1.52e-115 348

Find 142 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACACGTATTCGAATTTA+TGG 0.122198 8_4:+51767072 Msa1331980:three_prime_UTR
CCTCTGCGTTCTGTGAATTT+AGG 0.150005 8_4:-51762368 None:intergenic
GGTGAGAGAGAATTGGAATT+AGG 0.180412 8_4:-51762431 None:intergenic
CTCTGCGTTCTGTGAATTTA+GGG 0.219295 8_4:-51762367 None:intergenic
AAACTTCTTGCCATTGAAAT+AGG 0.232877 8_4:-51762724 None:intergenic
AGTGAAGATTTAGAAGTTAA+TGG 0.246664 8_4:+51765376 Msa1331980:CDS
TGTACAATTGAGAATGATAT+TGG 0.246949 8_4:+51767315 Msa1331980:three_prime_UTR
GTGCGTATTCCACTTGTATC+AGG 0.257066 8_4:-51763651 None:intergenic
GTGAGAGAGAATTGGAATTA+GGG 0.271739 8_4:-51762430 None:intergenic
GTGGAGAAGGCTGCAACTTC+TGG 0.280137 8_4:+51766397 Msa1331980:CDS
GAATGAGAGGGTCCTTGATT+TGG 0.301939 8_4:+51766783 Msa1331980:CDS
CATTCTGCCCTTAGGTTAAT+CGG 0.302536 8_4:+51766538 Msa1331980:intron
GTGAAGATTTAGAAGTTAAT+GGG 0.313739 8_4:+51765377 Msa1331980:CDS
TCATCGAAGGAGAAATAATT+AGG 0.314747 8_4:-51762476 None:intergenic
CTTCCTTGTGCAGTGGTAGT+TGG 0.319845 8_4:+51762120 Msa1331980:five_prime_UTR
TGAATTGTGAATGTGGAAAA+TGG 0.329568 8_4:-51762217 None:intergenic
CATCCTGTTGTTGACATAAT+CGG 0.338420 8_4:-51764901 None:intergenic
CTTTATATATAGAGTTCGTT+TGG 0.341353 8_4:-51762167 None:intergenic
GAGAAGAGGTGAGAGAGAAT+TGG 0.361552 8_4:-51762438 None:intergenic
GTCAGACTCAAATGGAATAA+AGG 0.364370 8_4:+51766949 Msa1331980:CDS
TTATGTCCATCGACTGAATC+AGG 0.387311 8_4:+51765270 Msa1331980:CDS
ATATAGAGTTCGTTTGGGTT+TGG 0.388436 8_4:-51762161 None:intergenic
ACAACAAATTTGGGATTATG+TGG 0.392975 8_4:+51765240 Msa1331980:CDS
TTCATCATCTTCTCTTCATC+AGG 0.396642 8_4:+51762537 Msa1331980:CDS
CGGAGAAAGAATAACGCGTT+TGG 0.398175 8_4:-51762243 None:intergenic
ACCAACATGTCCAGTTTGCT+TGG 0.402731 8_4:+51763466 Msa1331980:CDS
CCGTCTTCTTACATCTCAAT+TGG 0.403056 8_4:+51765990 Msa1331980:CDS
GTCTGGGTTTGTATGATTTG+TGG 0.411595 8_4:+51764962 Msa1331980:CDS
GTGGAACATTAGATGATGTC+TGG 0.413609 8_4:+51764945 Msa1331980:CDS
ACTTCTTGCCTCAATTAGTA+AGG 0.414456 8_4:-51766347 None:intergenic
TGAAACTCACCCAAGCAAAC+TGG 0.414850 8_4:-51763476 None:intergenic
GGTCCTTGATTTGGAGGAAC+AGG 0.415267 8_4:+51766792 Msa1331980:CDS
TTCAACTTTGCTGTTAAAGA+AGG 0.416559 8_4:-51765401 None:intergenic
GCATTTCATACCTATTTCAA+TGG 0.416711 8_4:+51762714 Msa1331980:CDS
ATCAATGAGTAAGCCCTATC+CGG 0.417887 8_4:-51767262 None:intergenic
TGTTTGAATCCCAGAGAGAC+TGG 0.421884 8_4:+51763626 Msa1331980:intron
TTCTTGCTGTTTCCAGGAGA+AGG 0.425015 8_4:-51767004 None:intergenic
TTTCCTGTGGCAGTTAAGTC+AGG 0.436305 8_4:-51767175 None:intergenic
TTTATATATAGAGTTCGTTT+GGG 0.442349 8_4:-51762166 None:intergenic
TGCAACTTGTTTGCTTTGTG+TGG 0.442472 8_4:+51767228 Msa1331980:three_prime_UTR
GCTCATGAGCAACCTTCTCC+TGG 0.443145 8_4:+51766992 Msa1331980:CDS
GTTCACTGTATGTCTCTAGA+AGG 0.443877 8_4:+51765331 Msa1331980:CDS
GGAGCGGAGAAGATGAGTTC+GGG 0.448861 8_4:-51762326 None:intergenic
GAGAGGAGTGTGAAGCGCTT+CGG 0.450487 8_4:-51762406 None:intergenic
GGCTGCAACTTCTGGCATGC+TGG 0.450669 8_4:+51766405 Msa1331980:CDS
TGGAGCGGAGAAGATGAGTT+CGG 0.454323 8_4:-51762327 None:intergenic
GATGAAGACGATCAAGATAG+TGG 0.455616 8_4:-51762520 None:intergenic
AGAATTGGAATTAGGGAGAG+AGG 0.456750 8_4:-51762423 None:intergenic
GCAACTTGTTTGCTTTGTGT+GGG 0.456787 8_4:+51767229 Msa1331980:three_prime_UTR
GATAAAATGTCAGACTCAAA+TGG 0.459339 8_4:+51766941 Msa1331980:CDS
GGAACGATGGGATGGAAGAT+AGG 0.463072 8_4:+51762649 Msa1331980:intron
CGTCGTCGACTGAGTGGACT+CGG 0.465807 8_4:-51762289 None:intergenic
TCTCCTTCGATGATTTCATT+CGG 0.467942 8_4:+51762486 Msa1331980:CDS
GGAGAAAGAATAACGCGTTT+GGG 0.469234 8_4:-51762242 None:intergenic
CTGCCGATTATGTCAACAAC+AGG 0.469592 8_4:+51764898 Msa1331980:CDS
TTATGAATCCTTACTAATTG+AGG 0.471285 8_4:+51766339 Msa1331980:CDS
TCGGAATGTGAAGAAGTTGC+TGG 0.471476 8_4:+51763416 Msa1331980:CDS
TAGAGTTCGTTTGGGTTTGG+CGG 0.476305 8_4:-51762158 None:intergenic
AAGAACATGGTTTCTTTGAT+CGG 0.476637 8_4:-51762263 None:intergenic
TTTGATTTGGTAGGAACGAT+GGG 0.480219 8_4:+51762637 Msa1331980:intron
TGTATGATTTGTGGATTTGT+CGG 0.483896 8_4:+51764971 Msa1331980:CDS
GTGGACATATTTGTCTTGCC+AGG 0.485200 8_4:+51763716 Msa1331980:CDS
TGAGAGGGTCCTTGATTTGG+AGG 0.485934 8_4:+51766786 Msa1331980:CDS
TGGGGATGTAATCCCCGGAT+AGG 0.488434 8_4:+51767248 Msa1331980:three_prime_UTR
CCGTTATTACTTACCTCAGC+AGG 0.492902 8_4:-51762750 None:intergenic
GATATGCATTAGAACACTCT+TGG 0.493745 8_4:-51767136 None:intergenic
ATTTGTGGATTTGTCGGATG+TGG 0.494341 8_4:+51764977 Msa1331980:CDS
CCAACATGTCCAGTTTGCTT+GGG 0.495855 8_4:+51763467 Msa1331980:CDS
AGAGTTCGTTTGGGTTTGGC+GGG 0.511424 8_4:-51762157 None:intergenic
GTTGCTGGGACTCCTCCAGC+TGG 0.513889 8_4:+51763431 Msa1331980:CDS
CTTCTCCACTGCTTCAGATA+CGG 0.513939 8_4:-51766383 None:intergenic
CAAAGCAAACAAGTTGCAAT+GGG 0.518455 8_4:-51767223 None:intergenic
CAGGATCAATCTAGAATTGA+CGG 0.519347 8_4:+51765289 Msa1331980:CDS
TCAATGAGTAAGCCCTATCC+GGG 0.520907 8_4:-51767261 None:intergenic
TTCACTGTATGTCTCTAGAA+GGG 0.522047 8_4:+51765332 Msa1331980:CDS
TTTGCTTTCCGTGGAATACT+CGG 0.522856 8_4:+51763397 Msa1331980:CDS
TGCGTATTCCACTTGTATCA+GGG 0.527421 8_4:-51763650 None:intergenic
GTTCCACAAATAAAACAAGT+TGG 0.529607 8_4:-51764929 None:intergenic
CGCAAGGGCATTGAAATGAA+TGG 0.532039 8_4:-51763686 None:intergenic
TTCCTTCCTTCCTTGTGCAG+TGG 0.535609 8_4:+51762113 Msa1331980:five_prime_UTR
GGTATTTCTGTACAACCAGC+TGG 0.536457 8_4:-51763446 None:intergenic
GGGGATGTAATCCCCGGATA+GGG 0.540545 8_4:+51767249 Msa1331980:three_prime_UTR
AGAAGTAAAATTCATAGCAA+AGG 0.544078 8_4:-51767355 None:intergenic
AAGGACATGCTATTCAGCAT+TGG 0.544403 8_4:+51765179 Msa1331980:CDS
ATTGATCCTGATTCAGTCGA+TGG 0.544517 8_4:-51765276 None:intergenic
ATACCTGTTCCTCCAAATCA+AGG 0.546149 8_4:-51766795 None:intergenic
ATGAAGACGATCAAGATAGT+GGG 0.546605 8_4:-51762519 None:intergenic
CTTTAACAGCAAAGTTGAAG+CGG 0.546937 8_4:+51765405 Msa1331980:CDS
TTTCTCATTACTTCGAGCAT+CGG 0.547637 8_4:-51767286 None:intergenic
ATTTGGTAGGAACGATGGGA+TGG 0.551457 8_4:+51762641 Msa1331980:intron
ACGTATTCGAATTTATGGAC+TGG 0.551755 8_4:+51767077 Msa1331980:three_prime_UTR
ACAAAGCAAACAAGTTGCAA+TGG 0.552915 8_4:-51767224 None:intergenic
CAACTTGTTTGCTTTGTGTG+GGG 0.554374 8_4:+51767230 Msa1331980:three_prime_UTR
TGGAACATTAGATGATGTCT+GGG 0.559204 8_4:+51764946 Msa1331980:CDS
TTCACATTCCGAGTATTCCA+CGG 0.559393 8_4:-51763405 None:intergenic
CGTATCTGAAGCAGTGGAGA+AGG 0.559498 8_4:+51766384 Msa1331980:CDS
AGATTAAAGAAGCAGAAGAG+AGG 0.561135 8_4:+51766595 Msa1331980:CDS
CAACAAATTTGGGATTATGT+GGG 0.563048 8_4:+51765241 Msa1331980:CDS
GAAGGTTGCTCATGAGCCAC+TGG 0.563743 8_4:-51766986 None:intergenic
CGGAATGTGAAGAAGTTGCT+GGG 0.571574 8_4:+51763417 Msa1331980:CDS
TTCTTGGGATTGGGTTGGAG+CGG 0.574169 8_4:-51762342 None:intergenic
AATGCCCTTGCGTCTCAAAG+TGG 0.575637 8_4:+51763697 Msa1331980:CDS
TACCACTGCACAAGGAAGGA+AGG 0.576990 8_4:-51762115 None:intergenic
GTACCTGACTTAACTGCCAC+AGG 0.577510 8_4:+51767172 Msa1331980:three_prime_UTR
GATTCTCGTCGTCGACTGAG+TGG 0.577788 8_4:-51762295 None:intergenic
CATTGAAGTCGATGAATGAG+AGG 0.577929 8_4:+51766770 Msa1331980:CDS
TAGAATTGACGGCAAGTCGA+AGG 0.578499 8_4:+51765300 Msa1331980:CDS
TATGTCCACTTTGAGACGCA+AGG 0.588521 8_4:-51763702 None:intergenic
AGAAAGAAATGTTGTTGCTG+AGG 0.588529 8_4:+51766459 Msa1331980:CDS
AAGATGAGTTCGGGATCGAG+TGG 0.588594 8_4:-51762317 None:intergenic
TTGTGTGGGGATGTAATCCC+CGG 0.591669 8_4:+51767243 Msa1331980:three_prime_UTR
AGACTCAAATGGAATAAAGG+AGG 0.592588 8_4:+51766952 Msa1331980:CDS
GTGGATTTGTCGGATGTGGA+AGG 0.595592 8_4:+51764981 Msa1331980:CDS
CCCAAGCAAACTGGACATGT+TGG 0.601547 8_4:-51763467 None:intergenic
TTGTGAATGTGGAAAATGGA+AGG 0.607125 8_4:-51762213 None:intergenic
AAGCTCCGTATCTGAAGCAG+TGG 0.608444 8_4:+51766378 Msa1331980:CDS
CAACTACCACTGCACAAGGA+AGG 0.608703 8_4:-51762119 None:intergenic
ATGTCCACTTTGAGACGCAA+GGG 0.620907 8_4:-51763701 None:intergenic
GACTCAAATGGAATAAAGGA+GGG 0.622185 8_4:+51766953 Msa1331980:CDS
GTGGACTCGGAGGAAGAACA+TGG 0.623052 8_4:-51762276 None:intergenic
ACAGCGAGGATGAAGAGAAG+AGG 0.623767 8_4:-51762452 None:intergenic
TGGGAGCTGAAATGTAAGGT+GGG 0.623977 8_4:-51767204 None:intergenic
TGAAGATTTAGAAGTTAATG+GGG 0.626069 8_4:+51765378 Msa1331980:CDS
TTGGGTCTGAATTGTGAATG+TGG 0.629630 8_4:-51762224 None:intergenic
TCACTGTATGTCTCTAGAAG+GGG 0.634476 8_4:+51765333 Msa1331980:CDS
CCAATTGAGATGTAAGAAGA+CGG 0.636618 8_4:-51765990 None:intergenic
AAACCGAATGAAATCATCGA+AGG 0.643428 8_4:-51762489 None:intergenic
AAAACAGAAAGTCTGGTCGA+AGG 0.644959 8_4:+51767026 Msa1331980:CDS
ACAGAAAGTCTGGTCGAAGG+CGG 0.651997 8_4:+51767029 Msa1331980:CDS
GCAATGGGAGCTGAAATGTA+AGG 0.665081 8_4:-51767208 None:intergenic
ATGGGAGCTGAAATGTAAGG+TGG 0.666276 8_4:-51767205 None:intergenic
TGTGAATGTGGAAAATGGAA+GGG 0.670214 8_4:-51762212 None:intergenic
GTTCCAACTACCACTGCACA+AGG 0.671019 8_4:-51762123 None:intergenic
ATTGAAGTCGATGAATGAGA+GGG 0.674240 8_4:+51766771 Msa1331980:CDS
CCTAAATTCACAGAACGCAG+AGG 0.674835 8_4:+51762368 Msa1331980:CDS
AGACTGGACCCTGATACAAG+TGG 0.679214 8_4:+51763642 Msa1331980:CDS
TGAAGACGATCAAGATAGTG+GGG 0.690985 8_4:-51762518 None:intergenic
ATTTCTGTACAACCAGCTGG+AGG 0.702761 8_4:-51763443 None:intergenic
AGAAATAATTAGGAACAGCG+AGG 0.702814 8_4:-51762466 None:intergenic
GGAGGGAACAGTCTTACCAG+TGG 0.721862 8_4:+51766970 Msa1331980:CDS
CGTCGACTGAGTGGACTCGG+AGG 0.727644 8_4:-51762286 None:intergenic
CAATGAGTAAGCCCTATCCG+GGG 0.744983 8_4:-51767260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATCAACAATTA+GGG - chr8_4:51762620-51762639 None:intergenic 10.0%
!! ATAATTATGAAATATTATCT+TGG + chr8_4:51764053-51764072 Msa1331980:intron 10.0%
!! TAATTATGAAATATTATCTT+GGG + chr8_4:51764054-51764073 Msa1331980:intron 10.0%
!!! TTTTTATTTTCTAAAAAACA+AGG + chr8_4:51764635-51764654 Msa1331980:intron 10.0%
!! TATATAAATGACAATAAAAT+GGG - chr8_4:51765091-51765110 None:intergenic 10.0%
!! CAAAATTAAAATCAACAATT+AGG - chr8_4:51762621-51762640 None:intergenic 15.0%
!!! TGTTGATTTTAATTTTGATT+TGG + chr8_4:51762624-51762643 Msa1331980:intron 15.0%
!!! ACTTTTTTTTTCTTTTTCAA+GGG - chr8_4:51762890-51762909 None:intergenic 15.0%
!!! TCAAATAAGTTATTTCAAAT+AGG + chr8_4:51763018-51763037 Msa1331980:intron 15.0%
!! TCAAGTAAATAGTATTAATA+AGG + chr8_4:51763145-51763164 Msa1331980:intron 15.0%
!! CAAGTAAATAGTATTAATAA+GGG + chr8_4:51763146-51763165 Msa1331980:intron 15.0%
!! ATAAATTTAAAAAACGACAA+AGG - chr8_4:51763296-51763315 None:intergenic 15.0%
!!! TTGTCGTTTTTTAAATTTAT+TGG + chr8_4:51763296-51763315 Msa1331980:intron 15.0%
!! TATTATTACACTTTAATCTT+TGG + chr8_4:51763777-51763796 Msa1331980:intron 15.0%
!!! AAGTATGTCTAAATAAATTT+TGG - chr8_4:51764348-51764367 None:intergenic 15.0%
!! CCAACTTAAATTAATAATTA+GGG - chr8_4:51764589-51764608 None:intergenic 15.0%
!!! CCTAATTATTAATTTAAGTT+GGG + chr8_4:51764587-51764606 Msa1331980:intron 15.0%
!! TTTGTTTAACATATTAAGTA+GGG - chr8_4:51765063-51765082 None:intergenic 15.0%
!!! TTTTGTTTAACATATTAAGT+AGG - chr8_4:51765064-51765083 None:intergenic 15.0%
!! CTATATAAATGACAATAAAA+TGG - chr8_4:51765092-51765111 None:intergenic 15.0%
!!! CATTTTATTGTCATTTATAT+AGG + chr8_4:51765090-51765109 Msa1331980:intron 15.0%
!!! TTTTAATCTAGATATAAAGA+AGG + chr8_4:51765160-51765179 Msa1331980:intron 15.0%
!!! ATTATAATGTTAACTTGTTA+AGG - chr8_4:51765511-51765530 None:intergenic 15.0%
!! CATTTATAGAATAACTATAT+GGG - chr8_4:51765789-51765808 None:intergenic 15.0%
!! CATATAGTTATTCTATAAAT+GGG + chr8_4:51765788-51765807 Msa1331980:intron 15.0%
!! TCATAATACTAAAACAAAAA+TGG - chr8_4:51766325-51766344 None:intergenic 15.0%
!!! AGTAAAGTTGTTTTTTTTTT+TGG + chr8_4:51766686-51766705 Msa1331980:intron 15.0%
!! TTTAAATATGTGATCATTTA+GGG + chr8_4:51766738-51766757 Msa1331980:intron 15.0%
!! TTTATATATAGAGTTCGTTT+GGG - chr8_4:51762169-51762188 None:intergenic 20.0%
!!! ATTACAGAACTTTTTCAAAA+TGG - chr8_4:51762580-51762599 None:intergenic 20.0%
!!! GATTTTAATTTTGATTTGGT+AGG + chr8_4:51762628-51762647 Msa1331980:intron 20.0%
!!! GACTTTTTTTTTCTTTTTCA+AGG - chr8_4:51762891-51762910 None:intergenic 20.0%
!! AATAGGACTTAAGTAAAAAT+AGG + chr8_4:51763035-51763054 Msa1331980:intron 20.0%
!! TTGAAATGAAGCTTATATTT+AGG + chr8_4:51763196-51763215 Msa1331980:intron 20.0%
!! TGAAATGAAGCTTATATTTA+GGG + chr8_4:51763197-51763216 Msa1331980:intron 20.0%
!! TTCAAAAAAGACTTGTATTT+AGG + chr8_4:51763231-51763250 Msa1331980:intron 20.0%
!!! AAGGTATTAATTGATTATTG+AGG - chr8_4:51763277-51763296 None:intergenic 20.0%
!!! GAGAATATCATAATTTTGTT+TGG + chr8_4:51764084-51764103 Msa1331980:intron 20.0%
!! TTTATCTTTATACAAGAGTT+TGG - chr8_4:51764208-51764227 None:intergenic 20.0%
!!! ACTAAATGGATTTTAATATC+TGG - chr8_4:51764557-51764576 None:intergenic 20.0%
!! CCCTAATTATTAATTTAAGT+TGG + chr8_4:51764586-51764605 Msa1331980:intron 20.0%
!! CCCAACTTAAATTAATAATT+AGG - chr8_4:51764590-51764609 None:intergenic 20.0%
!!! TATTTTCTAAAAAACAAGGA+AGG + chr8_4:51764639-51764658 Msa1331980:intron 20.0%
!!! ATTTTCTAAAAAACAAGGAA+GGG + chr8_4:51764640-51764659 Msa1331980:intron 20.0%
!! TGGAAATATTATTGTATTGA+TGG + chr8_4:51764833-51764852 Msa1331980:intron 20.0%
!! ACTTATGATGTTTATATTGT+AGG + chr8_4:51764874-51764893 Msa1331980:intron 20.0%
!!! ATTTTAGAACACAACAAATT+TGG + chr8_4:51765230-51765249 Msa1331980:CDS 20.0%
!!! TTTTAGAACACAACAAATTT+GGG + chr8_4:51765231-51765250 Msa1331980:CDS 20.0%
!!! ATTTTATGCTGATACTAATT+TGG + chr8_4:51765640-51765659 Msa1331980:intron 20.0%
!!! TTTTATGCTGATACTAATTT+GGG + chr8_4:51765641-51765660 Msa1331980:intron 20.0%
!! CCATTTATAGAATAACTATA+TGG - chr8_4:51765790-51765809 None:intergenic 20.0%
!! CCATATAGTTATTCTATAAA+TGG + chr8_4:51765787-51765806 Msa1331980:intron 20.0%
!! TCATTAAAAATTCAGAAATG+TGG + chr8_4:51766565-51766584 Msa1331980:CDS 20.0%
!! TTAAACATGTAATGAGAATA+TGG - chr8_4:51766723-51766742 None:intergenic 20.0%
!! GTTTAAATATGTGATCATTT+AGG + chr8_4:51766737-51766756 Msa1331980:intron 20.0%
! CTTTATATATAGAGTTCGTT+TGG - chr8_4:51762170-51762189 None:intergenic 25.0%
!!! ATAGGTATAGTGTTTTGATT+AGG + chr8_4:51762667-51762686 Msa1331980:CDS 25.0%
! ACATGACAAGTACAAATTTA+TGG - chr8_4:51762786-51762805 None:intergenic 25.0%
!!! GTTTTTTGTATAAGCTATCT+TGG + chr8_4:51762916-51762935 Msa1331980:intron 25.0%
! ACTTATTTGAGCTTATTTAC+TGG - chr8_4:51763008-51763027 None:intergenic 25.0%
! AAAGAGAGATATACGTAATA+AGG - chr8_4:51763326-51763345 None:intergenic 25.0%
! TCAAATGATGATCAAAATGT+AGG + chr8_4:51763352-51763371 Msa1331980:intron 25.0%
! CGGAAAGCAAAAATAAAATA+TGG - chr8_4:51763388-51763407 None:intergenic 25.0%
!!! TATTTTATTTTTGCTTTCCG+TGG + chr8_4:51763388-51763407 Msa1331980:CDS 25.0%
! GTGTAATAATATGTCAAAAC+AGG - chr8_4:51763768-51763787 None:intergenic 25.0%
! ATTACACTTTAATCTTTGGT+TGG + chr8_4:51763781-51763800 Msa1331980:intron 25.0%
! TAAAGATAAAAGATGCAACA+TGG + chr8_4:51764218-51764237 Msa1331980:intron 25.0%
! AAAGATAAAAGATGCAACAT+GGG + chr8_4:51764219-51764238 Msa1331980:intron 25.0%
!!! ATCAGTTCTTTAATTTTCGT+TGG + chr8_4:51765016-51765035 Msa1331980:intron 25.0%
!!! TTATTTGCTTTTGTTTTGTC+AGG + chr8_4:51765113-51765132 Msa1331980:intron 25.0%
!!! TATTTGCTTTTGTTTTGTCA+GGG + chr8_4:51765114-51765133 Msa1331980:intron 25.0%
! AGTGAAGATTTAGAAGTTAA+TGG + chr8_4:51765376-51765395 Msa1331980:CDS 25.0%
! GTGAAGATTTAGAAGTTAAT+GGG + chr8_4:51765377-51765396 Msa1331980:CDS 25.0%
! TGAAGATTTAGAAGTTAATG+GGG + chr8_4:51765378-51765397 Msa1331980:CDS 25.0%
!! ACCTTAACAAGTTTTTAACA+AGG + chr8_4:51765481-51765500 Msa1331980:intron 25.0%
! AGTGAAAAAAATTTCAAGGA+TGG - chr8_4:51766044-51766063 None:intergenic 25.0%
!!! CTTGAAATTTTTTTCACTGT+GGG + chr8_4:51766046-51766065 Msa1331980:intron 25.0%
!!! TTGAAATTTTTTTCACTGTG+GGG + chr8_4:51766047-51766066 Msa1331980:intron 25.0%
! AAGTGATGTAATTTATAGTG+TGG + chr8_4:51766173-51766192 Msa1331980:intron 25.0%
! TTATGAATCCTTACTAATTG+AGG + chr8_4:51766339-51766358 Msa1331980:CDS 25.0%
!!! TACACTTTTCTAGTTCATTT+TGG - chr8_4:51766435-51766454 None:intergenic 25.0%
! TAACTTCATTCCAAACAAAT+TGG - chr8_4:51766644-51766663 None:intergenic 25.0%
! TCTATACAAAGGATTAATGA+AGG - chr8_4:51766829-51766848 None:intergenic 25.0%
! ATTGGAAAACTTCTATACAA+AGG - chr8_4:51766840-51766859 None:intergenic 25.0%
!! CAATTTTATTGTTCTCTGAT+GGG + chr8_4:51766856-51766875 Msa1331980:intron 25.0%
!!! ATGCATATCTGAAATTTTGA+TGG + chr8_4:51767150-51767169 Msa1331980:three_prime_UTR 25.0%
! TGTACAATTGAGAATGATAT+TGG + chr8_4:51767315-51767334 Msa1331980:three_prime_UTR 25.0%
! AGAAGTAAAATTCATAGCAA+AGG - chr8_4:51767358-51767377 None:intergenic 25.0%
TGAATTGTGAATGTGGAAAA+TGG - chr8_4:51762220-51762239 None:intergenic 30.0%
AAGAACATGGTTTCTTTGAT+CGG - chr8_4:51762266-51762285 None:intergenic 30.0%
!! TGTGAATTTAGGGTTTTCTT+GGG - chr8_4:51762360-51762379 None:intergenic 30.0%
TCATCGAAGGAGAAATAATT+AGG - chr8_4:51762479-51762498 None:intergenic 30.0%
GCATTTCATACCTATTTCAA+TGG + chr8_4:51762714-51762733 Msa1331980:CDS 30.0%
AAACTTCTTGCCATTGAAAT+AGG - chr8_4:51762727-51762746 None:intergenic 30.0%
AAACACTTATGAGACTGTTT+GGG - chr8_4:51762982-51763001 None:intergenic 30.0%
TAAACACTTATGAGACTGTT+TGG - chr8_4:51762983-51763002 None:intergenic 30.0%
TGAACACATCTATATGCAAA+AGG - chr8_4:51763107-51763126 None:intergenic 30.0%
CATATAGATGTGTTCAATTC+TGG + chr8_4:51763111-51763130 Msa1331980:intron 30.0%
! AAAACAGGTTTTCATGGAAT+GGG - chr8_4:51763753-51763772 None:intergenic 30.0%
! TATGTCAAAACAGGTTTTCA+TGG - chr8_4:51763759-51763778 None:intergenic 30.0%
AAGAGTTATATTGCCTAACT+AGG + chr8_4:51763898-51763917 Msa1331980:intron 30.0%
CCAAATACGTTCTTAAACTT+TGG - chr8_4:51764015-51764034 None:intergenic 30.0%
CCAAAGTTTAAGAACGTATT+TGG + chr8_4:51764012-51764031 Msa1331980:intron 30.0%
! CTAGGTTGGAAAAAATTGAT+AGG - chr8_4:51764263-51764282 None:intergenic 30.0%
!!! CTATCAATTTTTTCCAACCT+AGG + chr8_4:51764261-51764280 Msa1331980:intron 30.0%
GACATACTTCACTTATTGTT+CGG + chr8_4:51764359-51764378 Msa1331980:intron 30.0%
TAGGGAGAAAATACACTAAA+TGG - chr8_4:51764571-51764590 None:intergenic 30.0%
!!! AACAAAAGCACTGGTTTTAT+TGG + chr8_4:51764801-51764820 Msa1331980:intron 30.0%
!!! AAGCCAACTTGTTTTATTTG+TGG + chr8_4:51764926-51764945 Msa1331980:CDS 30.0%
GTTCCACAAATAAAACAAGT+TGG - chr8_4:51764932-51764951 None:intergenic 30.0%
! TGTATGATTTGTGGATTTGT+CGG + chr8_4:51764971-51764990 Msa1331980:CDS 30.0%
! ACAACAAATTTGGGATTATG+TGG + chr8_4:51765240-51765259 Msa1331980:CDS 30.0%
! CAACAAATTTGGGATTATGT+GGG + chr8_4:51765241-51765260 Msa1331980:CDS 30.0%
!! TTCAACTTTGCTGTTAAAGA+AGG - chr8_4:51765404-51765423 None:intergenic 30.0%
!! GCCTTGTTAAAAACTTGTTA+AGG - chr8_4:51765485-51765504 None:intergenic 30.0%
!! TGTTTGCTGTGTAATTAACA+CGG + chr8_4:51765708-51765727 Msa1331980:intron 30.0%
GATGTGTAAACATTGTTTCA+TGG + chr8_4:51765841-51765860 Msa1331980:intron 30.0%
GCATGTGAAAGAAAAATCAT+CGG - chr8_4:51765921-51765940 None:intergenic 30.0%
! CTCTGTCACTGATTAATTAA+TGG + chr8_4:51765940-51765959 Msa1331980:intron 30.0%
CCACAGTGAAAAAAATTTCA+AGG - chr8_4:51766048-51766067 None:intergenic 30.0%
!!! CCTTGAAATTTTTTTCACTG+TGG + chr8_4:51766045-51766064 Msa1331980:intron 30.0%
GTTTCTTTCACTTATGATGA+AGG + chr8_4:51766209-51766228 Msa1331980:intron 30.0%
AGCAAGCAATAAGGAAATAT+AGG - chr8_4:51766495-51766514 None:intergenic 30.0%
! AAACAAATTGGTAGCTTAAG+TGG - chr8_4:51766632-51766651 None:intergenic 30.0%
! ACTTAAGCTACCAATTTGTT+TGG + chr8_4:51766631-51766650 Msa1331980:intron 30.0%
CCATCAGAGAACAATAAAAT+TGG - chr8_4:51766858-51766877 None:intergenic 30.0%
! CCAATTTTATTGTTCTCTGA+TGG + chr8_4:51766855-51766874 Msa1331980:intron 30.0%
GATAAAATGTCAGACTCAAA+TGG + chr8_4:51766941-51766960 Msa1331980:CDS 30.0%
AGAACACGTATTCGAATTTA+TGG + chr8_4:51767072-51767091 Msa1331980:three_prime_UTR 30.0%
!!! TATGGACTGGTTTAAGTTTT+TGG + chr8_4:51767090-51767109 Msa1331980:three_prime_UTR 30.0%
!!! CATTAACTGTTAGTTTTTCG+TGG + chr8_4:51767442-51767461 Msa1331980:three_prime_UTR 30.0%
! ATATAGAGTTCGTTTGGGTT+TGG - chr8_4:51762164-51762183 None:intergenic 35.0%
TGTGAATGTGGAAAATGGAA+GGG - chr8_4:51762215-51762234 None:intergenic 35.0%
TTGTGAATGTGGAAAATGGA+AGG - chr8_4:51762216-51762235 None:intergenic 35.0%
!! TTTAGGGTTTTCTTGGGATT+GGG - chr8_4:51762354-51762373 None:intergenic 35.0%
!! ATTTAGGGTTTTCTTGGGAT+TGG - chr8_4:51762355-51762374 None:intergenic 35.0%
!! CTGTGAATTTAGGGTTTTCT+TGG - chr8_4:51762361-51762380 None:intergenic 35.0%
GTGAGAGAGAATTGGAATTA+GGG - chr8_4:51762433-51762452 None:intergenic 35.0%
AGAAATAATTAGGAACAGCG+AGG - chr8_4:51762469-51762488 None:intergenic 35.0%
TCTCCTTCGATGATTTCATT+CGG + chr8_4:51762486-51762505 Msa1331980:CDS 35.0%
AAACCGAATGAAATCATCGA+AGG - chr8_4:51762492-51762511 None:intergenic 35.0%
! GATGATTTCATTCGGTTTTG+TGG + chr8_4:51762494-51762513 Msa1331980:CDS 35.0%
ATGAAGACGATCAAGATAGT+GGG - chr8_4:51762522-51762541 None:intergenic 35.0%
TTCATCATCTTCTCTTCATC+AGG + chr8_4:51762537-51762556 Msa1331980:CDS 35.0%
!!! TTTTGATTTGGTAGGAACGA+TGG + chr8_4:51762636-51762655 Msa1331980:intron 35.0%
!! TTTGATTTGGTAGGAACGAT+GGG + chr8_4:51762637-51762656 Msa1331980:intron 35.0%
!! AGGTAAGTAATAACGGGTTT+GGG + chr8_4:51762757-51762776 Msa1331980:intron 35.0%
!! CAACTTAGTTTGCAGCTTAT+AGG + chr8_4:51762836-51762855 Msa1331980:intron 35.0%
AAGCTATCTTGGACATCTTA+TGG + chr8_4:51762927-51762946 Msa1331980:intron 35.0%
TGAGGTGATTATGATTGTGT+GGG + chr8_4:51763569-51763588 Msa1331980:intron 35.0%
!! ATTGTGTGGGTTGATGTTTA+TGG + chr8_4:51763582-51763601 Msa1331980:intron 35.0%
! AAACAGGTTTTCATGGAATG+GGG - chr8_4:51763752-51763771 None:intergenic 35.0%
! CAAAACAGGTTTTCATGGAA+TGG - chr8_4:51763754-51763773 None:intergenic 35.0%
! ATTAGACTCTTAGAGCATCA+TGG + chr8_4:51763811-51763830 Msa1331980:intron 35.0%
! TTAGACTCTTAGAGCATCAT+GGG + chr8_4:51763812-51763831 Msa1331980:intron 35.0%
ATGATTCTTCATGAGAAGCT+TGG + chr8_4:51763851-51763870 Msa1331980:intron 35.0%
CTCACGATAATATCCTAGTT+AGG - chr8_4:51763914-51763933 None:intergenic 35.0%
CTAACTAGGATATTATCGTG+AGG + chr8_4:51763912-51763931 Msa1331980:intron 35.0%
AACGAGTTTGAAAGTTTCTC+AGG + chr8_4:51763968-51763987 Msa1331980:intron 35.0%
!!! ACACTTTTTAAGTCCCAAAG+TGG + chr8_4:51764128-51764147 Msa1331980:intron 35.0%
!!! TTTTTAAGTCCCAAAGTGGA+TGG + chr8_4:51764132-51764151 Msa1331980:intron 35.0%
ACCTTTATACCATCCACTTT+GGG - chr8_4:51764144-51764163 None:intergenic 35.0%
TACCTTTATACCATCCACTT+TGG - chr8_4:51764145-51764164 None:intergenic 35.0%
ATGAGCTTAATATCCTAGGT+TGG - chr8_4:51764277-51764296 None:intergenic 35.0%
ATACTTCACTTATTGTTCGG+AGG + chr8_4:51764362-51764381 Msa1331980:intron 35.0%
CCAGAATGCATTGAATTTCT+GGG + chr8_4:51764409-51764428 Msa1331980:intron 35.0%
! AATGCATTGAATTTCTGGGA+AGG + chr8_4:51764413-51764432 Msa1331980:intron 35.0%
AAGGTAACAACTTCAACACA+TGG + chr8_4:51764511-51764530 Msa1331980:intron 35.0%
TGGAATGTGCAATGATAAGT+TGG - chr8_4:51764537-51764556 None:intergenic 35.0%
! TTCTAAAAAACAAGGAAGGG+CGG + chr8_4:51764643-51764662 Msa1331980:intron 35.0%
CATCCTGTTGTTGACATAAT+CGG - chr8_4:51764904-51764923 None:intergenic 35.0%
TGGAACATTAGATGATGTCT+GGG + chr8_4:51764946-51764965 Msa1331980:CDS 35.0%
! CAGGATCAATCTAGAATTGA+CGG + chr8_4:51765289-51765308 Msa1331980:CDS 35.0%
! TTCACTGTATGTCTCTAGAA+GGG + chr8_4:51765332-51765351 Msa1331980:CDS 35.0%
CTTTAACAGCAAAGTTGAAG+CGG + chr8_4:51765405-51765424 Msa1331980:CDS 35.0%
!! AAAAAGCTTCTCTGAAATCG+TGG + chr8_4:51765442-51765461 Msa1331980:intron 35.0%
AGCAAACAAAATCATACCAC+AGG - chr8_4:51765696-51765715 None:intergenic 35.0%
!! GTTTGCTGTGTAATTAACAC+GGG + chr8_4:51765709-51765728 Msa1331980:intron 35.0%
! TTTGCTGTGTAATTAACACG+GGG + chr8_4:51765710-51765729 Msa1331980:intron 35.0%
TGTCATGTAGACATAGAGAT+AGG + chr8_4:51765763-51765782 Msa1331980:intron 35.0%
ACAACCAAATGTGTGACATT+AGG - chr8_4:51765867-51765886 None:intergenic 35.0%
! TAATGGACATGAACAGATTG+TGG + chr8_4:51765957-51765976 Msa1331980:intron 35.0%
CCAATTGAGATGTAAGAAGA+CGG - chr8_4:51765993-51766012 None:intergenic 35.0%
CTAGTTTCTTGAATGTCAAC+TGG + chr8_4:51766150-51766169 Msa1331980:intron 35.0%
TTCACTTATGATGAAGGCTT+TGG + chr8_4:51766215-51766234 Msa1331980:intron 35.0%
TCACTTATGATGAAGGCTTT+GGG + chr8_4:51766216-51766235 Msa1331980:intron 35.0%
AATTGCTATGATACTCGCAA+TGG + chr8_4:51766241-51766260 Msa1331980:intron 35.0%
ATTGCTATGATACTCGCAAT+GGG + chr8_4:51766242-51766261 Msa1331980:intron 35.0%
ACTTCTTGCCTCAATTAGTA+AGG - chr8_4:51766350-51766369 None:intergenic 35.0%
AGAAAGAAATGTTGTTGCTG+AGG + chr8_4:51766459-51766478 Msa1331980:CDS 35.0%
CAGAGTTAAAGCAAGCAATA+AGG - chr8_4:51766504-51766523 None:intergenic 35.0%
AGATTAAAGAAGCAGAAGAG+AGG + chr8_4:51766595-51766614 Msa1331980:CDS 35.0%
ATTGAAGTCGATGAATGAGA+GGG + chr8_4:51766771-51766790 Msa1331980:CDS 35.0%
GTCAGACTCAAATGGAATAA+AGG + chr8_4:51766949-51766968 Msa1331980:CDS 35.0%
AGACTCAAATGGAATAAAGG+AGG + chr8_4:51766952-51766971 Msa1331980:CDS 35.0%
GACTCAAATGGAATAAAGGA+GGG + chr8_4:51766953-51766972 Msa1331980:CDS 35.0%
AGCAAGAAAAACAGAAAGTC+TGG + chr8_4:51767019-51767038 Msa1331980:CDS 35.0%
ACGTATTCGAATTTATGGAC+TGG + chr8_4:51767077-51767096 Msa1331980:three_prime_UTR 35.0%
!!! GACTGGTTTAAGTTTTTGGA+GGG + chr8_4:51767094-51767113 Msa1331980:three_prime_UTR 35.0%
GATATGCATTAGAACACTCT+TGG - chr8_4:51767139-51767158 None:intergenic 35.0%
CAAAGCAAACAAGTTGCAAT+GGG - chr8_4:51767226-51767245 None:intergenic 35.0%
ACAAAGCAAACAAGTTGCAA+TGG - chr8_4:51767227-51767246 None:intergenic 35.0%
TTTCTCATTACTTCGAGCAT+CGG - chr8_4:51767289-51767308 None:intergenic 35.0%
TTGGGTCTGAATTGTGAATG+TGG - chr8_4:51762227-51762246 None:intergenic 40.0%
GGAGAAAGAATAACGCGTTT+GGG - chr8_4:51762245-51762264 None:intergenic 40.0%
CTCTGCGTTCTGTGAATTTA+GGG - chr8_4:51762370-51762389 None:intergenic 40.0%
AGAATTGGAATTAGGGAGAG+AGG - chr8_4:51762426-51762445 None:intergenic 40.0%
GGTGAGAGAGAATTGGAATT+AGG - chr8_4:51762434-51762453 None:intergenic 40.0%
TGAAGACGATCAAGATAGTG+GGG - chr8_4:51762521-51762540 None:intergenic 40.0%
GATGAAGACGATCAAGATAG+TGG - chr8_4:51762523-51762542 None:intergenic 40.0%
CCTGCTGAGGTAAGTAATAA+CGG + chr8_4:51762750-51762769 Msa1331980:intron 40.0%
CTGCTGAGGTAAGTAATAAC+GGG + chr8_4:51762751-51762770 Msa1331980:intron 40.0%
!! GAGGTAAGTAATAACGGGTT+TGG + chr8_4:51762756-51762775 Msa1331980:intron 40.0%
TTTGCTTTCCGTGGAATACT+CGG + chr8_4:51763397-51763416 Msa1331980:CDS 40.0%
TTCACATTCCGAGTATTCCA+CGG - chr8_4:51763408-51763427 None:intergenic 40.0%
CTGAGGTGATTATGATTGTG+TGG + chr8_4:51763568-51763587 Msa1331980:intron 40.0%
TGCGTATTCCACTTGTATCA+GGG - chr8_4:51763653-51763672 None:intergenic 40.0%
! CTTAGAGCATCATGGGTATT+AGG + chr8_4:51763819-51763838 Msa1331980:intron 40.0%
TCCCAAAGTGGATGGTATAA+AGG + chr8_4:51764140-51764159 Msa1331980:intron 40.0%
GCTCATGAGCTTAATATCCT+AGG - chr8_4:51764281-51764300 None:intergenic 40.0%
GCCAGAATGCATTGAATTTC+TGG + chr8_4:51764408-51764427 Msa1331980:intron 40.0%
CCCAGAAATTCAATGCATTC+TGG - chr8_4:51764412-51764431 None:intergenic 40.0%
! TCGTGACAAGGTATTCGAAT+TGG - chr8_4:51764443-51764462 None:intergenic 40.0%
! TTTCAAGTGAAGTCGTGACA+AGG - chr8_4:51764455-51764474 None:intergenic 40.0%
AAGTTGTTACCTTGACCATG+AGG - chr8_4:51764504-51764523 None:intergenic 40.0%
!!! GGTTTTATTGGTAATGCACG+TGG + chr8_4:51764813-51764832 Msa1331980:intron 40.0%
GTGGAACATTAGATGATGTC+TGG + chr8_4:51764945-51764964 Msa1331980:CDS 40.0%
GTCTGGGTTTGTATGATTTG+TGG + chr8_4:51764962-51764981 Msa1331980:CDS 40.0%
ATTTGTGGATTTGTCGGATG+TGG + chr8_4:51764977-51764996 Msa1331980:CDS 40.0%
CAGGGAAGACTTTAATGCTA+TGG + chr8_4:51765132-51765151 Msa1331980:intron 40.0%
AAGGACATGCTATTCAGCAT+TGG + chr8_4:51765179-51765198 Msa1331980:CDS 40.0%
! TTATGTCCATCGACTGAATC+AGG + chr8_4:51765270-51765289 Msa1331980:CDS 40.0%
ATTGATCCTGATTCAGTCGA+TGG - chr8_4:51765279-51765298 None:intergenic 40.0%
GTTCACTGTATGTCTCTAGA+AGG + chr8_4:51765331-51765350 Msa1331980:CDS 40.0%
! TCACTGTATGTCTCTAGAAG+GGG + chr8_4:51765333-51765352 Msa1331980:CDS 40.0%
!! TTCTCTGAAATCGTGGAGTT+AGG + chr8_4:51765449-51765468 Msa1331980:intron 40.0%
!! TCTCTGAAATCGTGGAGTTA+GGG + chr8_4:51765450-51765469 Msa1331980:intron 40.0%
CTATGTCTACATGACAGTAC+AGG - chr8_4:51765759-51765778 None:intergenic 40.0%
TGTTTACACATCACGTGTGA+CGG - chr8_4:51765833-51765852 None:intergenic 40.0%
ATGGCCTAATGTCACACATT+TGG + chr8_4:51765860-51765879 Msa1331980:intron 40.0%
CCGTCTTCTTACATCTCAAT+TGG + chr8_4:51765990-51766009 Msa1331980:CDS 40.0%
CATTCTGCCCTTAGGTTAAT+CGG + chr8_4:51766538-51766557 Msa1331980:intron 40.0%
TGAGCTTCCGATTAACCTAA+GGG - chr8_4:51766548-51766567 None:intergenic 40.0%
ATGAGCTTCCGATTAACCTA+AGG - chr8_4:51766549-51766568 None:intergenic 40.0%
AAGAAGCAGAAGAGAGGTAA+TGG + chr8_4:51766601-51766620 Msa1331980:intron 40.0%
CATTGAAGTCGATGAATGAG+AGG + chr8_4:51766770-51766789 Msa1331980:CDS 40.0%
ATACCTGTTCCTCCAAATCA+AGG - chr8_4:51766798-51766817 None:intergenic 40.0%
!!! CTGTTTTTCTTGCTGTTTCC+AGG - chr8_4:51767013-51767032 None:intergenic 40.0%
AAAACAGAAAGTCTGGTCGA+AGG + chr8_4:51767026-51767045 Msa1331980:CDS 40.0%
!!! GGACTGGTTTAAGTTTTTGG+AGG + chr8_4:51767093-51767112 Msa1331980:three_prime_UTR 40.0%
! TGCAACTTGTTTGCTTTGTG+TGG + chr8_4:51767228-51767247 Msa1331980:three_prime_UTR 40.0%
! GCAACTTGTTTGCTTTGTGT+GGG + chr8_4:51767229-51767248 Msa1331980:three_prime_UTR 40.0%
! CAACTTGTTTGCTTTGTGTG+GGG + chr8_4:51767230-51767249 Msa1331980:three_prime_UTR 40.0%
ATCAATGAGTAAGCCCTATC+CGG - chr8_4:51767265-51767284 None:intergenic 40.0%
! TAGAGTTCGTTTGGGTTTGG+CGG - chr8_4:51762161-51762180 None:intergenic 45.0%
CGGAGAAAGAATAACGCGTT+TGG - chr8_4:51762246-51762265 None:intergenic 45.0%
CCTCTGCGTTCTGTGAATTT+AGG - chr8_4:51762371-51762390 None:intergenic 45.0%
CCTAAATTCACAGAACGCAG+AGG + chr8_4:51762368-51762387 Msa1331980:CDS 45.0%
GAGAAGAGGTGAGAGAGAAT+TGG - chr8_4:51762441-51762460 None:intergenic 45.0%
ATTTGGTAGGAACGATGGGA+TGG + chr8_4:51762641-51762660 Msa1331980:intron 45.0%
! CAAGAAGTTTTCTCCTGCTG+AGG + chr8_4:51762737-51762756 Msa1331980:CDS 45.0%
CCGTTATTACTTACCTCAGC+AGG - chr8_4:51762753-51762772 None:intergenic 45.0%
TCGGAATGTGAAGAAGTTGC+TGG + chr8_4:51763416-51763435 Msa1331980:CDS 45.0%
CGGAATGTGAAGAAGTTGCT+GGG + chr8_4:51763417-51763436 Msa1331980:CDS 45.0%
ATTTCTGTACAACCAGCTGG+AGG - chr8_4:51763446-51763465 None:intergenic 45.0%
! GGTATTTCTGTACAACCAGC+TGG - chr8_4:51763449-51763468 None:intergenic 45.0%
! ACCAACATGTCCAGTTTGCT+TGG + chr8_4:51763466-51763485 Msa1331980:CDS 45.0%
! CCAACATGTCCAGTTTGCTT+GGG + chr8_4:51763467-51763486 Msa1331980:CDS 45.0%
TGAAACTCACCCAAGCAAAC+TGG - chr8_4:51763479-51763498 None:intergenic 45.0%
CCAAGATCCAAGCAAACAGA+GGG - chr8_4:51763519-51763538 None:intergenic 45.0%
ACCAAGATCCAAGCAAACAG+AGG - chr8_4:51763520-51763539 None:intergenic 45.0%
CGCTGTCTTCAATTTCTCTG+AGG + chr8_4:51763551-51763570 Msa1331980:intron 45.0%
TGTTTGAATCCCAGAGAGAC+TGG + chr8_4:51763626-51763645 Msa1331980:intron 45.0%
GTGCGTATTCCACTTGTATC+AGG - chr8_4:51763654-51763673 None:intergenic 45.0%
!! CGCAAGGGCATTGAAATGAA+TGG - chr8_4:51763689-51763708 None:intergenic 45.0%
!! ATGTCCACTTTGAGACGCAA+GGG - chr8_4:51763704-51763723 None:intergenic 45.0%
!! TATGTCCACTTTGAGACGCA+AGG - chr8_4:51763705-51763724 None:intergenic 45.0%
GTGGACATATTTGTCTTGCC+AGG + chr8_4:51763716-51763735 Msa1331980:CDS 45.0%
AAAAGATGCAACATGGGCGA+TGG + chr8_4:51764225-51764244 Msa1331980:intron 45.0%
AAAGATGCAACATGGGCGAT+GGG + chr8_4:51764226-51764245 Msa1331980:intron 45.0%
ACATGGGCGATGGGAAAAAA+TGG + chr8_4:51764235-51764254 Msa1331980:intron 45.0%
TGTTACCTTGACCATGAGGA+GGG - chr8_4:51764500-51764519 None:intergenic 45.0%
TTGTTACCTTGACCATGAGG+AGG - chr8_4:51764501-51764520 None:intergenic 45.0%
ACAAGGAAGGGCGGAAATTA+AGG + chr8_4:51764652-51764671 Msa1331980:intron 45.0%
! TGCTTCGCTAACAAAAGCAC+TGG + chr8_4:51764792-51764811 Msa1331980:intron 45.0%
! CTGCCGATTATGTCAACAAC+AGG + chr8_4:51764898-51764917 Msa1331980:CDS 45.0%
TAGAATTGACGGCAAGTCGA+AGG + chr8_4:51765300-51765319 Msa1331980:CDS 45.0%
TTGAAGCGGTATGTTTCTCG+TGG + chr8_4:51765419-51765438 Msa1331980:intron 45.0%
AGCGACAAGCTCACTTTAAG+TGG + chr8_4:51765580-51765599 Msa1331980:intron 45.0%
AAATCATACCACAGGTGCAC+AGG - chr8_4:51765688-51765707 None:intergenic 45.0%
! AACACGGGGCTTTATGCATA+AGG + chr8_4:51765724-51765743 Msa1331980:intron 45.0%
CTTCTCCACTGCTTCAGATA+CGG - chr8_4:51766386-51766405 None:intergenic 45.0%
AGACACTTCATTCTGCCCTT+AGG + chr8_4:51766530-51766549 Msa1331980:intron 45.0%
GAATGAGAGGGTCCTTGATT+TGG + chr8_4:51766783-51766802 Msa1331980:CDS 45.0%
!! TTCTTGCTGTTTCCAGGAGA+AGG - chr8_4:51767007-51767026 None:intergenic 45.0%
TTTCCTGTGGCAGTTAAGTC+AGG - chr8_4:51767178-51767197 None:intergenic 45.0%
!!! AGGTGGGCTAATTTTTCCTG+TGG - chr8_4:51767191-51767210 None:intergenic 45.0%
TGGGAGCTGAAATGTAAGGT+GGG - chr8_4:51767207-51767226 None:intergenic 45.0%
ATGGGAGCTGAAATGTAAGG+TGG - chr8_4:51767208-51767227 None:intergenic 45.0%
GCAATGGGAGCTGAAATGTA+AGG - chr8_4:51767211-51767230 None:intergenic 45.0%
TCAATGAGTAAGCCCTATCC+GGG - chr8_4:51767264-51767283 None:intergenic 45.0%
TTCCTTCCTTCCTTGTGCAG+TGG + chr8_4:51762113-51762132 Msa1331980:five_prime_UTR 50.0%
TACCACTGCACAAGGAAGGA+AGG - chr8_4:51762118-51762137 None:intergenic 50.0%
CAACTACCACTGCACAAGGA+AGG - chr8_4:51762122-51762141 None:intergenic 50.0%
CTTCCTTGTGCAGTGGTAGT+TGG + chr8_4:51762120-51762139 Msa1331980:five_prime_UTR 50.0%
GTTCCAACTACCACTGCACA+AGG - chr8_4:51762126-51762145 None:intergenic 50.0%
! AGAGTTCGTTTGGGTTTGGC+GGG - chr8_4:51762160-51762179 None:intergenic 50.0%
AAGATGAGTTCGGGATCGAG+TGG - chr8_4:51762320-51762339 None:intergenic 50.0%
TGGAGCGGAGAAGATGAGTT+CGG - chr8_4:51762330-51762349 None:intergenic 50.0%
!! TTCTTGGGATTGGGTTGGAG+CGG - chr8_4:51762345-51762364 None:intergenic 50.0%
! GGGTTTTCTTGGGATTGGGT+TGG - chr8_4:51762350-51762369 None:intergenic 50.0%
ACAGCGAGGATGAAGAGAAG+AGG - chr8_4:51762455-51762474 None:intergenic 50.0%
GGAACGATGGGATGGAAGAT+AGG + chr8_4:51762649-51762668 Msa1331980:intron 50.0%
CCCAAGCAAACTGGACATGT+TGG - chr8_4:51763470-51763489 None:intergenic 50.0%
ATCGTGACCCTCTGTTTGCT+TGG + chr8_4:51763509-51763528 Msa1331980:intron 50.0%
CCCTCTGTTTGCTTGGATCT+TGG + chr8_4:51763516-51763535 Msa1331980:intron 50.0%
TATCAGGGTCCAGTCTCTCT+GGG - chr8_4:51763638-51763657 None:intergenic 50.0%
AGACTGGACCCTGATACAAG+TGG + chr8_4:51763642-51763661 Msa1331980:CDS 50.0%
AATGCCCTTGCGTCTCAAAG+TGG + chr8_4:51763697-51763716 Msa1331980:CDS 50.0%
GAATGGGGAAGCTACATACC+TGG - chr8_4:51763737-51763756 None:intergenic 50.0%
!! TCAATGCATTCTGGCTCGCT+TGG - chr8_4:51764403-51764422 None:intergenic 50.0%
TTACCTTGACCATGAGGAGG+GGG - chr8_4:51764498-51764517 None:intergenic 50.0%
GTTACCTTGACCATGAGGAG+GGG - chr8_4:51764499-51764518 None:intergenic 50.0%
GTGGATTTGTCGGATGTGGA+AGG + chr8_4:51764981-51765000 Msa1331980:CDS 50.0%
AACAAAAGCCTGTGCACCTG+TGG + chr8_4:51765677-51765696 Msa1331980:intron 50.0%
! AAGCTCCGTATCTGAAGCAG+TGG + chr8_4:51766378-51766397 Msa1331980:CDS 50.0%
! CGTATCTGAAGCAGTGGAGA+AGG + chr8_4:51766384-51766403 Msa1331980:CDS 50.0%
!! TGAGAGGGTCCTTGATTTGG+AGG + chr8_4:51766786-51766805 Msa1331980:CDS 50.0%
!! GGTCCTTGATTTGGAGGAAC+AGG + chr8_4:51766792-51766811 Msa1331980:CDS 50.0%
ACAGAAAGTCTGGTCGAAGG+CGG + chr8_4:51767029-51767048 Msa1331980:CDS 50.0%
GTACCTGACTTAACTGCCAC+AGG + chr8_4:51767172-51767191 Msa1331980:three_prime_UTR 50.0%
TTGTGTGGGGATGTAATCCC+CGG + chr8_4:51767243-51767262 Msa1331980:three_prime_UTR 50.0%
CAATGAGTAAGCCCTATCCG+GGG - chr8_4:51767263-51767282 None:intergenic 50.0%
GTGGACTCGGAGGAAGAACA+TGG - chr8_4:51762279-51762298 None:intergenic 55.0%
! GATTCTCGTCGTCGACTGAG+TGG - chr8_4:51762298-51762317 None:intergenic 55.0%
GGAGCGGAGAAGATGAGTTC+GGG - chr8_4:51762329-51762348 None:intergenic 55.0%
! GAGAGGAGTGTGAAGCGCTT+CGG - chr8_4:51762409-51762428 None:intergenic 55.0%
GTATCAGGGTCCAGTCTCTC+TGG - chr8_4:51763639-51763658 None:intergenic 55.0%
TACCTTGACCATGAGGAGGG+GGG - chr8_4:51764497-51764516 None:intergenic 55.0%
GTGGAGAAGGCTGCAACTTC+TGG + chr8_4:51766397-51766416 Msa1331980:CDS 55.0%
GGAGGGAACAGTCTTACCAG+TGG + chr8_4:51766970-51766989 Msa1331980:CDS 55.0%
GAAGGTTGCTCATGAGCCAC+TGG - chr8_4:51766989-51767008 None:intergenic 55.0%
GCTCATGAGCAACCTTCTCC+TGG + chr8_4:51766992-51767011 Msa1331980:CDS 55.0%
TGGGGATGTAATCCCCGGAT+AGG + chr8_4:51767248-51767267 Msa1331980:three_prime_UTR 55.0%
GGGGATGTAATCCCCGGATA+GGG + chr8_4:51767249-51767268 Msa1331980:three_prime_UTR 55.0%
! CGTCGTCGACTGAGTGGACT+CGG - chr8_4:51762292-51762311 None:intergenic 60.0%
GGCTGCAACTTCTGGCATGC+TGG + chr8_4:51766405-51766424 Msa1331980:CDS 60.0%
! CGTCGACTGAGTGGACTCGG+AGG - chr8_4:51762289-51762308 None:intergenic 65.0%
GTTGCTGGGACTCCTCCAGC+TGG + chr8_4:51763431-51763450 Msa1331980:CDS 65.0%
! AGGAGGGGGGTGCAAAGGCA+AGG - chr8_4:51764484-51764503 None:intergenic 65.0%
! CCATGAGGAGGGGGGTGCAA+AGG - chr8_4:51764489-51764508 None:intergenic 65.0%
CCTTTGCACCCCCCTCCTCA+TGG + chr8_4:51764486-51764505 Msa1331980:intron 65.0%
CACCCCCCTCCTCATGGTCA+AGG + chr8_4:51764492-51764511 Msa1331980:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51762106 51767466 51762106 ID=Msa1331980;Name=Msa1331980
chr8_4 mRNA 51762106 51767466 51762106 ID=Msa1331980-mRNA-1;Parent=Msa1331980;Name=Msa1331980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=172|1|1|1|1|1|11|409|480
chr8_4 exon 51762106 51762558 51762106 ID=Msa1331980-mRNA-1:exon:15299;Parent=Msa1331980-mRNA-1
chr8_4 exon 51762650 51762758 51762650 ID=Msa1331980-mRNA-1:exon:15300;Parent=Msa1331980-mRNA-1
chr8_4 exon 51763374 51763488 51763374 ID=Msa1331980-mRNA-1:exon:15301;Parent=Msa1331980-mRNA-1
chr8_4 exon 51763640 51763737 51763640 ID=Msa1331980-mRNA-1:exon:15302;Parent=Msa1331980-mRNA-1
chr8_4 exon 51764896 51765002 51764896 ID=Msa1331980-mRNA-1:exon:15303;Parent=Msa1331980-mRNA-1
chr8_4 exon 51765171 51765426 51765171 ID=Msa1331980-mRNA-1:exon:15304;Parent=Msa1331980-mRNA-1
chr8_4 exon 51765973 51766026 51765973 ID=Msa1331980-mRNA-1:exon:15305;Parent=Msa1331980-mRNA-1
chr8_4 exon 51766337 51766480 51766337 ID=Msa1331980-mRNA-1:exon:15306;Parent=Msa1331980-mRNA-1
chr8_4 exon 51766552 51766616 51766552 ID=Msa1331980-mRNA-1:exon:15307;Parent=Msa1331980-mRNA-1
chr8_4 exon 51766759 51766813 51766759 ID=Msa1331980-mRNA-1:exon:15308;Parent=Msa1331980-mRNA-1
chr8_4 exon 51766899 51767466 51766899 ID=Msa1331980-mRNA-1:exon:15309;Parent=Msa1331980-mRNA-1
chr8_4 five_prime_UTR 51762106 51762277 51762106 ID=Msa1331980-mRNA-1:five_prime_utr;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51762278 51762558 51762278 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51762650 51762758 51762650 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51763374 51763488 51763374 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51763640 51763737 51763640 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51764896 51765002 51764896 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51765171 51765426 51765171 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51765973 51766026 51765973 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51766337 51766480 51766337 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51766552 51766616 51766552 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51766759 51766813 51766759 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 CDS 51766899 51767057 51766899 ID=Msa1331980-mRNA-1:cds;Parent=Msa1331980-mRNA-1
chr8_4 three_prime_UTR 51767058 51767466 51767058 ID=Msa1331980-mRNA-1:three_prime_utr;Parent=Msa1331980-mRNA-1
Gene Sequence

>Msa1331980

ATGTTCTTCCTCCGAGTCCACTCAGTCGACGACGAGAATCCACTCGATCCCGAACTCATCTTCTCCGCTCCAACCCAATCCCAAGAAAACCCTAAATTCACAGAACGCAGAGGCGTTCTTCATCTCTTCCGAAGCGCTTCACACTCCTCTCTCCCTAATTCCAATTCTCTCTCACCTCTTCTCTTCATCCTCGCTGTTCCTAATTATTTCTCCTTCGATGATTTCATTCGGTTTTGTGGTCCCCACTATCTTGATCGTCTTCATCATCTTCTCTTCATCAGGAACGATGGGATGGAAGATAGGTATAGTGTTTTGATTAGGTTTGATGATCAGCTTGCTGCTGATGCATTTCATACCTATTTCAATGGCAAGAAGTTTTCTCCTGCTGAGGCAGAGATATGCCATATTTTATTTTTGCTTTCCGTGGAATACTCGGAATGTGAAGAAGTTGCTGGGACTCCTCCAGCTGGTTGTACAGAAATACCAACATGTCCAGTTTGCTTGGAGAGACTGGACCCTGATACAAGTGGAATACGCACAACACTTTGTGACCATTCATTTCAATGCCCTTGCGTCTCAAAGTGGACATATTTGTCTTGCCAGGTCTGCCGATTATGTCAACAACAGGATGAGAAGCCAACTTGTTTTATTTGTGGAACATTAGATGATGTCTGGGTTTGTATGATTTGTGGATTTGTCGGATGTGGAAGATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAGAACACAACAAATTTGGGATTATGTGGGTGACAATTATGTCCATCGACTGAATCAGGATCAATCTAGAATTGACGGCAAGTCGAAGGAGATGCATGTTCACTGTATGTCTCTAGAAGGGGATTGTGACACATGTGAATGTAGTGAAGATTTAGAAGTTAATGGGGCCTTCTTTAACAGCAAAGTTGAAGCGATTGTGGATGAATACAACCGTCTTCTTACATCTCAATTGGAGACTCAAAGACAATATTATGAATCCTTACTAATTGAGGCAAGAAGTAAAGAAGAAAGCTCCGTATCTGAAGCAGTGGAGAAGGCTGCAACTTCTGGCATGCTGGATATCCAAAATGAACTAGAAAAGTGTACAGAAGAAAGAAATGTTGTTGCTGAGGTTAATCGGAAGCTCATTAAAAATTCAGAAATGTGGCGAAAGAAGATTAAAGAAGCAGAAGAGAGGGAAGCTACATCATTGAAGTCGATGAATGAGAGGGTCCTTGATTTGGAGGAACAGATAAGAGATATCACGATTTTTCTACAAGCACAAAAAACAATTGATAAAATGTCAGACTCAAATGGAATAAAGGAGGGAACAGTCTTACCAGTGGCTCATGAGCAACCTTCTCCTGGAAACAGCAAGAAAAACAGAAAGTCTGGTCGAAGGCGGCGTTAG

Protein sequence

>Msa1331980

MFFLRVHSVDDENPLDPELIFSAPTQSQENPKFTERRGVLHLFRSASHSSLPNSNSLSPLLFILAVPNYFSFDDFIRFCGPHYLDRLHHLLFIRNDGMEDRYSVLIRFDDQLAADAFHTYFNGKKFSPAEAEICHILFLLSVEYSECEEVAGTPPAGCTEIPTCPVCLERLDPDTSGIRTTLCDHSFQCPCVSKWTYLSCQVCRLCQQQDEKPTCFICGTLDDVWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFRTQQIWDYVGDNYVHRLNQDQSRIDGKSKEMHVHCMSLEGDCDTCECSEDLEVNGAFFNSKVEAIVDEYNRLLTSQLETQRQYYESLLIEARSKEESSVSEAVEKAATSGMLDIQNELEKCTEERNVVAEVNRKLIKNSEMWRKKIKEAEEREATSLKSMNERVLDLEEQIRDITIFLQAQKTIDKMSDSNGIKEGTVLPVAHEQPSPGNSKKNRKSGRRRR*