AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1332020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332020 MtrunA17_Chr4g0064091 97.500 480 11 1 1 480 1 479 0.0 979
Msa1332020 MtrunA17_Chr2g0333591 48.252 429 211 6 27 455 27 444 1.44e-144 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332020 AT2G42160.1 61.179 492 175 6 1 480 1 488 0.0 629
Msa1332020 AT2G42160.2 62.045 440 153 4 1 429 1 437 0.0 577
Msa1332020 AT2G42160.3 62.129 404 139 4 1 393 1 401 0.0 531
Msa1332020 AT2G26000.3 41.416 466 252 9 27 480 22 478 7.83e-129 382
Msa1332020 AT2G26000.2 41.416 466 252 9 27 480 22 478 7.83e-129 382
Msa1332020 AT2G26000.1 39.056 466 245 10 27 480 22 460 1.52e-115 348

Find 140 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACACGTATTCGAATTTA+TGG 0.122198 8_4:+51830500 Msa1332020:three_prime_UTR
CCTCTGCGTTCTGTGAATTT+AGG 0.150005 8_4:-51825802 None:intergenic
GGTGAGAGAGAATTGGAATT+AGG 0.180412 8_4:-51825865 None:intergenic
CTCTGCGTTCTGTGAATTTA+GGG 0.219295 8_4:-51825801 None:intergenic
AAACTTCTTGCCATTGAAAT+AGG 0.232877 8_4:-51826158 None:intergenic
AGTGAAGATTTAGAAGTTAA+TGG 0.246664 8_4:+51828804 Msa1332020:CDS
TGTACAATTGAGAATGATAT+TGG 0.246949 8_4:+51830743 Msa1332020:three_prime_UTR
GTGCGTATTCCACTTGTATC+AGG 0.257066 8_4:-51827081 None:intergenic
GTGAGAGAGAATTGGAATTA+GGG 0.271739 8_4:-51825864 None:intergenic
GTGGAGAAGGCTGCAACTTC+TGG 0.280137 8_4:+51829825 Msa1332020:CDS
GAATGAGAGGGTCCTTGATT+TGG 0.301939 8_4:+51830211 Msa1332020:CDS
CATTCTGCCCTTAGGTTAAT+CGG 0.302536 8_4:+51829966 Msa1332020:intron
CTTCCTTGTGCAGGGGTAGT+TGG 0.311545 8_4:+51825554 Msa1332020:five_prime_UTR
GTGAAGATTTAGAAGTTAAT+GGG 0.313739 8_4:+51828805 Msa1332020:CDS
TCATCGAAGGAGAAATAATT+AGG 0.314747 8_4:-51825910 None:intergenic
CATCCTGTTGTTGACATAAT+CGG 0.338420 8_4:-51828329 None:intergenic
CTTTATATATAGAGTTCGTT+TGG 0.341353 8_4:-51825601 None:intergenic
GCTTCCTTCCTTCCTTGTGC+AGG 0.360779 8_4:+51825545 Msa1332020:five_prime_UTR
GAGAAGAGGTGAGAGAGAAT+TGG 0.361552 8_4:-51825872 None:intergenic
GTCAGACTCAAATGGAATAA+AGG 0.364370 8_4:+51830377 Msa1332020:CDS
TTATGTCCATCGACTGAATC+AGG 0.387311 8_4:+51828698 Msa1332020:CDS
ATATAGAGTTCGTTTGGGTT+TGG 0.388436 8_4:-51825595 None:intergenic
ACAACAAATTTGGGATTATG+TGG 0.392975 8_4:+51828668 Msa1332020:CDS
TTCATCATCTTCTCTTCATC+AGG 0.396642 8_4:+51825971 Msa1332020:CDS
CGGAGAAAGAATAACGCGTT+TGG 0.398175 8_4:-51825677 None:intergenic
ACCAACATGTCCAGTTTGCT+TGG 0.402731 8_4:+51826898 Msa1332020:CDS
CCGTCTTCTTACATCTCAAT+TGG 0.403056 8_4:+51829418 Msa1332020:CDS
GTCTGGGTTTGTATGATTTG+TGG 0.411595 8_4:+51828390 Msa1332020:CDS
GTGGAACATTAGATGATGTC+TGG 0.413609 8_4:+51828373 Msa1332020:CDS
ACTTCTTGCCTCAATTAGTA+AGG 0.414456 8_4:-51829775 None:intergenic
TGAAACTCACCCAAGCAAAC+TGG 0.414850 8_4:-51826908 None:intergenic
GGTCCTTGATTTGGAGGAAC+AGG 0.415267 8_4:+51830220 Msa1332020:CDS
TTCAACTTTGCTGTTAAAGA+AGG 0.416559 8_4:-51828829 None:intergenic
GCATTTCATACCTATTTCAA+TGG 0.416711 8_4:+51826148 Msa1332020:CDS
ATCAATGAGTAAGCCCTATC+CGG 0.417887 8_4:-51830690 None:intergenic
TGTTTGAATCCCAGAGAGAC+TGG 0.421884 8_4:+51827056 Msa1332020:intron
TTCTTGCTGTTTCCAGGAGA+AGG 0.425015 8_4:-51830432 None:intergenic
TTTCCTGTGGCAGTTAAGTC+AGG 0.436305 8_4:-51830603 None:intergenic
TTTATATATAGAGTTCGTTT+GGG 0.442349 8_4:-51825600 None:intergenic
TGCAACTTGTTTGCTTTGTG+TGG 0.442472 8_4:+51830656 Msa1332020:three_prime_UTR
GCTCATGAGCAACCTTCTCC+TGG 0.443145 8_4:+51830420 Msa1332020:CDS
GTTCACTGTATGTCTCTAGA+AGG 0.443877 8_4:+51828759 Msa1332020:CDS
CTTCCTTCCTTCCTTGTGCA+GGG 0.448428 8_4:+51825546 Msa1332020:five_prime_UTR
GGAGCGGAGAAGATGAGTTC+GGG 0.448861 8_4:-51825760 None:intergenic
GAGAGGAGTGTGAAGCGCTT+CGG 0.450487 8_4:-51825840 None:intergenic
GGCTGCAACTTCTGGCATGC+TGG 0.450669 8_4:+51829833 Msa1332020:CDS
TGGAGCGGAGAAGATGAGTT+CGG 0.454323 8_4:-51825761 None:intergenic
GATGAAGACGATCAAGATAG+TGG 0.455616 8_4:-51825954 None:intergenic
AGAATTGGAATTAGGGAGAG+AGG 0.456750 8_4:-51825857 None:intergenic
GCAACTTGTTTGCTTTGTGT+GGG 0.456787 8_4:+51830657 Msa1332020:three_prime_UTR
GATAAAATGTCAGACTCAAA+TGG 0.459339 8_4:+51830369 Msa1332020:CDS
GGAACGATGGGATGGAAGAT+AGG 0.463072 8_4:+51826083 Msa1332020:intron
CGTCGTCGACTGAGTGGACT+CGG 0.465807 8_4:-51825723 None:intergenic
TCTCCTTCGATGATTTCATT+CGG 0.467942 8_4:+51825920 Msa1332020:CDS
GGAGAAAGAATAACGCGTTT+GGG 0.469234 8_4:-51825676 None:intergenic
CTGCCGATTATGTCAACAAC+AGG 0.469592 8_4:+51828326 Msa1332020:CDS
TTATGAATCCTTACTAATTG+AGG 0.471285 8_4:+51829767 Msa1332020:CDS
TCGGAATGTGAAGAAGTTGC+TGG 0.471476 8_4:+51826848 Msa1332020:CDS
TAGAGTTCGTTTGGGTTTGG+CGG 0.476305 8_4:-51825592 None:intergenic
AAGAACATGGTTTCTTTGAT+CGG 0.476637 8_4:-51825697 None:intergenic
TTTGATTTGGTAGGAACGAT+GGG 0.480219 8_4:+51826071 Msa1332020:intron
TGTATGATTTGTGGATTTGT+CGG 0.483896 8_4:+51828399 Msa1332020:CDS
GTGGACATATTTGTCTTGCC+AGG 0.485200 8_4:+51827146 Msa1332020:CDS
TGAGAGGGTCCTTGATTTGG+AGG 0.485934 8_4:+51830214 Msa1332020:CDS
TGGGGATGTAATCCCCGGAT+AGG 0.488434 8_4:+51830676 Msa1332020:three_prime_UTR
CCGTTATTACTTACCTCAGC+AGG 0.492902 8_4:-51826184 None:intergenic
GATATGCATTAGAACACTCT+TGG 0.493745 8_4:-51830564 None:intergenic
ATTTGTGGATTTGTCGGATG+TGG 0.494341 8_4:+51828405 Msa1332020:CDS
CCAACATGTCCAGTTTGCTT+GGG 0.495855 8_4:+51826899 Msa1332020:CDS
AGAGTTCGTTTGGGTTTGGC+GGG 0.511424 8_4:-51825591 None:intergenic
GTTGCTGGGACTCCTCCAGC+TGG 0.513889 8_4:+51826863 Msa1332020:CDS
CTTCTCCACTGCTTCAGATA+CGG 0.513939 8_4:-51829811 None:intergenic
CAAAGCAAACAAGTTGCAAT+GGG 0.518455 8_4:-51830651 None:intergenic
CAGGATCAATCTAGAATTGA+CGG 0.519347 8_4:+51828717 Msa1332020:CDS
TCAATGAGTAAGCCCTATCC+GGG 0.520907 8_4:-51830689 None:intergenic
TTCACTGTATGTCTCTAGAA+GGG 0.522047 8_4:+51828760 Msa1332020:CDS
TTTGCTTTCCGTGGAATACT+CGG 0.522856 8_4:+51826829 Msa1332020:CDS
TGCGTATTCCACTTGTATCA+GGG 0.527421 8_4:-51827080 None:intergenic
GTTCCACAAATAAAACAAGT+TGG 0.529607 8_4:-51828357 None:intergenic
CGCAAGGGCATTGAAATGAA+TGG 0.532039 8_4:-51827116 None:intergenic
GGTATTTCTGTACAACCAGC+TGG 0.536457 8_4:-51826878 None:intergenic
GGGGATGTAATCCCCGGATA+GGG 0.540545 8_4:+51830677 Msa1332020:three_prime_UTR
AGAAGTAAAATTCATAGCAA+AGG 0.544078 8_4:-51830783 None:intergenic
AAGGACATGCTATTCAGCAT+TGG 0.544403 8_4:+51828607 Msa1332020:CDS
ATTGATCCTGATTCAGTCGA+TGG 0.544517 8_4:-51828704 None:intergenic
ATACCTGTTCCTCCAAATCA+AGG 0.546149 8_4:-51830223 None:intergenic
ATGAAGACGATCAAGATAGT+GGG 0.546605 8_4:-51825953 None:intergenic
CTTTAACAGCAAAGTTGAAG+CGG 0.546937 8_4:+51828833 Msa1332020:CDS
TTTCTCATTACTTCGAGCAT+CGG 0.547637 8_4:-51830714 None:intergenic
ATTTGGTAGGAACGATGGGA+TGG 0.551457 8_4:+51826075 Msa1332020:intron
ACGTATTCGAATTTATGGAC+TGG 0.551755 8_4:+51830505 Msa1332020:three_prime_UTR
ACAAAGCAAACAAGTTGCAA+TGG 0.552915 8_4:-51830652 None:intergenic
CAACTTGTTTGCTTTGTGTG+GGG 0.554374 8_4:+51830658 Msa1332020:three_prime_UTR
TGGAACATTAGATGATGTCT+GGG 0.559204 8_4:+51828374 Msa1332020:CDS
TTCACATTCCGAGTATTCCA+CGG 0.559393 8_4:-51826837 None:intergenic
CGTATCTGAAGCAGTGGAGA+AGG 0.559498 8_4:+51829812 Msa1332020:CDS
AGATTAAAGAAGCAGAAGAG+AGG 0.561135 8_4:+51830023 Msa1332020:CDS
CAACAAATTTGGGATTATGT+GGG 0.563048 8_4:+51828669 Msa1332020:CDS
GAAGGTTGCTCATGAGCCAC+TGG 0.563743 8_4:-51830414 None:intergenic
CGGAATGTGAAGAAGTTGCT+GGG 0.571574 8_4:+51826849 Msa1332020:CDS
TTCTTGGGATTGGGTTGGAG+CGG 0.574169 8_4:-51825776 None:intergenic
AATGCCCTTGCGTCTCAAAG+TGG 0.575637 8_4:+51827127 Msa1332020:CDS
TACCCCTGCACAAGGAAGGA+AGG 0.576990 8_4:-51825549 None:intergenic
GTACCTGACTTAACTGCCAC+AGG 0.577510 8_4:+51830600 Msa1332020:three_prime_UTR
GATTCTCGTCGTCGACTGAG+TGG 0.577788 8_4:-51825729 None:intergenic
CATTGAAGTCGATGAATGAG+AGG 0.577929 8_4:+51830198 Msa1332020:CDS
TAGAATTGACGGCAAGTCGA+AGG 0.578499 8_4:+51828728 Msa1332020:CDS
CAACTACCCCTGCACAAGGA+AGG 0.579256 8_4:-51825553 None:intergenic
TATGTCCACTTTGAGACGCA+AGG 0.588521 8_4:-51827132 None:intergenic
AGAAAGAAATGTTGTTGCTG+AGG 0.588529 8_4:+51829887 Msa1332020:CDS
AAGATGAGTTCGGGATCGAG+TGG 0.588594 8_4:-51825751 None:intergenic
TTCCTTCCTTCCTTGTGCAG+GGG 0.588686 8_4:+51825547 Msa1332020:five_prime_UTR
TTGTGTGGGGATGTAATCCC+CGG 0.591669 8_4:+51830671 Msa1332020:three_prime_UTR
AGACTCAAATGGAATAAAGG+AGG 0.592588 8_4:+51830380 Msa1332020:CDS
GTGGATTTGTCGGATGTGGA+AGG 0.595592 8_4:+51828409 Msa1332020:CDS
CCCAAGCAAACTGGACATGT+TGG 0.601547 8_4:-51826899 None:intergenic
AAGCTCCGTATCTGAAGCAG+TGG 0.608444 8_4:+51829806 Msa1332020:CDS
ATGTCCACTTTGAGACGCAA+GGG 0.620907 8_4:-51827131 None:intergenic
GACTCAAATGGAATAAAGGA+GGG 0.622185 8_4:+51830381 Msa1332020:CDS
GTGGACTCGGAGGAAGAACA+TGG 0.623052 8_4:-51825710 None:intergenic
ACAGCGAGGATGAAGAGAAG+AGG 0.623767 8_4:-51825886 None:intergenic
TGGGAGCTGAAATGTAAGGT+GGG 0.623977 8_4:-51830632 None:intergenic
TGAAGATTTAGAAGTTAATG+GGG 0.626069 8_4:+51828806 Msa1332020:CDS
TCACTGTATGTCTCTAGAAG+GGG 0.634476 8_4:+51828761 Msa1332020:CDS
CCAATTGAGATGTAAGAAGA+CGG 0.636618 8_4:-51829418 None:intergenic
AAACCGAATGAAATCATCGA+AGG 0.643428 8_4:-51825923 None:intergenic
AAAACAGAAAGTCTGGTCGA+AGG 0.644959 8_4:+51830454 Msa1332020:CDS
ACAGAAAGTCTGGTCGAAGG+CGG 0.651997 8_4:+51830457 Msa1332020:CDS
GTTCCAACTACCCCTGCACA+AGG 0.658383 8_4:-51825557 None:intergenic
GCAATGGGAGCTGAAATGTA+AGG 0.665081 8_4:-51830636 None:intergenic
ATGGGAGCTGAAATGTAAGG+TGG 0.666276 8_4:-51830633 None:intergenic
ATTGAAGTCGATGAATGAGA+GGG 0.674240 8_4:+51830199 Msa1332020:CDS
CCTAAATTCACAGAACGCAG+AGG 0.674835 8_4:+51825802 Msa1332020:CDS
AGACTGGACCCTGATACAAG+TGG 0.679214 8_4:+51827072 Msa1332020:CDS
TGAAGACGATCAAGATAGTG+GGG 0.690985 8_4:-51825952 None:intergenic
ATTTCTGTACAACCAGCTGG+AGG 0.702761 8_4:-51826875 None:intergenic
AGAAATAATTAGGAACAGCG+AGG 0.702814 8_4:-51825900 None:intergenic
GGAGGGAACAGTCTTACCAG+TGG 0.721862 8_4:+51830398 Msa1332020:CDS
CGTCGACTGAGTGGACTCGG+AGG 0.727644 8_4:-51825720 None:intergenic
CAATGAGTAAGCCCTATCCG+GGG 0.744983 8_4:-51830688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATCAACAATTA+GGG - chr8_4:51826054-51826073 None:intergenic 10.0%
!! ATAATTATGAAATATTATCT+TGG + chr8_4:51827482-51827501 Msa1332020:intron 10.0%
!! TAATTATGAAATATTATCTT+GGG + chr8_4:51827483-51827502 Msa1332020:intron 10.0%
!!! TTTTTATTTTCTAAAAAACA+AGG + chr8_4:51828063-51828082 Msa1332020:intron 10.0%
!! TATATAAATGACAATAAAAT+GGG - chr8_4:51828519-51828538 None:intergenic 10.0%
!! CAAAATTAAAATCAACAATT+AGG - chr8_4:51826055-51826074 None:intergenic 15.0%
!!! TGTTGATTTTAATTTTGATT+TGG + chr8_4:51826058-51826077 Msa1332020:intron 15.0%
!!! ACTTTTTTTTTTCTTTTTCA+AGG - chr8_4:51826324-51826343 None:intergenic 15.0%
!! TCAAATAAGTTAATTCAAAT+AGG + chr8_4:51826452-51826471 Msa1332020:intron 15.0%
!! TCAAGTAAATAGTATTAATA+AGG + chr8_4:51826579-51826598 Msa1332020:intron 15.0%
!! CAAGTAAATAGTATTAATAA+GGG + chr8_4:51826580-51826599 Msa1332020:intron 15.0%
!! ATAAATTTAAAAAACGACAA+AGG - chr8_4:51826728-51826747 None:intergenic 15.0%
!!! TTGTCGTTTTTTAAATTTAT+TGG + chr8_4:51826728-51826747 Msa1332020:intron 15.0%
!! TATTATTACACTTTAATCTT+TGG + chr8_4:51827207-51827226 Msa1332020:intron 15.0%
!!! AAGTATGTCTAAATAAATTT+TGG - chr8_4:51827777-51827796 None:intergenic 15.0%
!! CCAACTTAAATTAATAATTA+GGG - chr8_4:51828017-51828036 None:intergenic 15.0%
!!! CCTAATTATTAATTTAAGTT+GGG + chr8_4:51828015-51828034 Msa1332020:intron 15.0%
!! TTTGTTTAACATATTAAGTA+GGG - chr8_4:51828491-51828510 None:intergenic 15.0%
!!! TTTTGTTTAACATATTAAGT+AGG - chr8_4:51828492-51828511 None:intergenic 15.0%
!! CTATATAAATGACAATAAAA+TGG - chr8_4:51828520-51828539 None:intergenic 15.0%
!!! CATTTTATTGTCATTTATAT+AGG + chr8_4:51828518-51828537 Msa1332020:intron 15.0%
!!! TTTTAATCTAGATATAAAGA+AGG + chr8_4:51828588-51828607 Msa1332020:intron 15.0%
!!! ATTATAATGTTAACTTGTTA+AGG - chr8_4:51828939-51828958 None:intergenic 15.0%
!! CATTTATAGAATAACTATAT+GGG - chr8_4:51829217-51829236 None:intergenic 15.0%
!! CATATAGTTATTCTATAAAT+GGG + chr8_4:51829216-51829235 Msa1332020:intron 15.0%
!! TCATAATACTAAAACAAAAA+TGG - chr8_4:51829753-51829772 None:intergenic 15.0%
!!! AGTAAAGTTGTTTTTTTTTT+TGG + chr8_4:51830114-51830133 Msa1332020:intron 15.0%
!! TTTAAATATGTGATCATTTA+GGG + chr8_4:51830166-51830185 Msa1332020:intron 15.0%
!! TTTATATATAGAGTTCGTTT+GGG - chr8_4:51825603-51825622 None:intergenic 20.0%
!!! ATTACAGAACTTTTTCAAAA+TGG - chr8_4:51826014-51826033 None:intergenic 20.0%
!!! GATTTTAATTTTGATTTGGT+AGG + chr8_4:51826062-51826081 Msa1332020:intron 20.0%
!! AATAGGACTTAAGTAAAAAT+AGG + chr8_4:51826469-51826488 Msa1332020:intron 20.0%
!!! TTAATGTGTTATTTTGTGTA+TGG + chr8_4:51826500-51826519 Msa1332020:intron 20.0%
!! TTGAAATGAAGCTTATATTT+AGG + chr8_4:51826630-51826649 Msa1332020:intron 20.0%
!! TGAAATGAAGCTTATATTTA+GGG + chr8_4:51826631-51826650 Msa1332020:intron 20.0%
!! TTCAAAAAAGACTTGTATTT+AGG + chr8_4:51826663-51826682 Msa1332020:intron 20.0%
!!! AAGGTATTAATTGATTATTG+AGG - chr8_4:51826709-51826728 None:intergenic 20.0%
!!! GAGAATATCATAATTTTGTT+TGG + chr8_4:51827513-51827532 Msa1332020:intron 20.0%
!! TTTATCTTTATACAAGAGTT+TGG - chr8_4:51827637-51827656 None:intergenic 20.0%
!!! ACTAAATGGATTTTAATATC+TGG - chr8_4:51827985-51828004 None:intergenic 20.0%
!! CCCTAATTATTAATTTAAGT+TGG + chr8_4:51828014-51828033 Msa1332020:intron 20.0%
!! CCCAACTTAAATTAATAATT+AGG - chr8_4:51828018-51828037 None:intergenic 20.0%
!!! TATTTTCTAAAAAACAAGGA+AGG + chr8_4:51828067-51828086 Msa1332020:intron 20.0%
!!! ATTTTCTAAAAAACAAGGAA+GGG + chr8_4:51828068-51828087 Msa1332020:intron 20.0%
!! TGGAAATATTATTGTATTGA+TGG + chr8_4:51828261-51828280 Msa1332020:intron 20.0%
!! ACTTATGATGTTTATATTGT+AGG + chr8_4:51828302-51828321 Msa1332020:intron 20.0%
!!! ATTTTAGAACACAACAAATT+TGG + chr8_4:51828658-51828677 Msa1332020:CDS 20.0%
!!! TTTTAGAACACAACAAATTT+GGG + chr8_4:51828659-51828678 Msa1332020:CDS 20.0%
!!! ATTTTATGCTGATACTAATT+TGG + chr8_4:51829068-51829087 Msa1332020:intron 20.0%
!!! TTTTATGCTGATACTAATTT+GGG + chr8_4:51829069-51829088 Msa1332020:intron 20.0%
!! CCATTTATAGAATAACTATA+TGG - chr8_4:51829218-51829237 None:intergenic 20.0%
!! CCATATAGTTATTCTATAAA+TGG + chr8_4:51829215-51829234 Msa1332020:intron 20.0%
!! TCATTAAAAATTCAGAAATG+TGG + chr8_4:51829993-51830012 Msa1332020:CDS 20.0%
!! TTAAACATGTAATGAGAATA+TGG - chr8_4:51830151-51830170 None:intergenic 20.0%
!! GTTTAAATATGTGATCATTT+AGG + chr8_4:51830165-51830184 Msa1332020:intron 20.0%
! CTTTATATATAGAGTTCGTT+TGG - chr8_4:51825604-51825623 None:intergenic 25.0%
! TGAATTGTGAATGTGAAAAA+TGG - chr8_4:51825654-51825673 None:intergenic 25.0%
!!! ATAGGTATAGTGTTTTGATT+AGG + chr8_4:51826101-51826120 Msa1332020:CDS 25.0%
! ACATGACAAGTACAAATTTA+TGG - chr8_4:51826220-51826239 None:intergenic 25.0%
!!! GTTTTTTGTATAAGCTATCT+TGG + chr8_4:51826350-51826369 Msa1332020:intron 25.0%
! ACTTATTTGAGCTTATTTAC+TGG - chr8_4:51826442-51826461 None:intergenic 25.0%
! AAAGAGAGATATACGTAATA+AGG - chr8_4:51826758-51826777 None:intergenic 25.0%
! TCAAATGATGATCAAAATGT+AGG + chr8_4:51826784-51826803 Msa1332020:intron 25.0%
! CGGAAAGCAAAAATAAAATA+TGG - chr8_4:51826820-51826839 None:intergenic 25.0%
!!! TATTTTATTTTTGCTTTCCG+TGG + chr8_4:51826820-51826839 Msa1332020:CDS 25.0%
! GTGTAATAATATGTCAAAAC+AGG - chr8_4:51827198-51827217 None:intergenic 25.0%
! ATTACACTTTAATCTTTGGT+TGG + chr8_4:51827211-51827230 Msa1332020:intron 25.0%
! TAAAGATAAAAGATGCAACA+TGG + chr8_4:51827647-51827666 Msa1332020:intron 25.0%
! AAAGATAAAAGATGCAACAT+GGG + chr8_4:51827648-51827667 Msa1332020:intron 25.0%
!!! ATCAGTTCTTTAATTTTCGT+TGG + chr8_4:51828444-51828463 Msa1332020:intron 25.0%
!!! TTATTTGCTTTTGTTTTGTC+AGG + chr8_4:51828541-51828560 Msa1332020:intron 25.0%
!!! TATTTGCTTTTGTTTTGTCA+GGG + chr8_4:51828542-51828561 Msa1332020:intron 25.0%
! AGTGAAGATTTAGAAGTTAA+TGG + chr8_4:51828804-51828823 Msa1332020:CDS 25.0%
! GTGAAGATTTAGAAGTTAAT+GGG + chr8_4:51828805-51828824 Msa1332020:CDS 25.0%
! TGAAGATTTAGAAGTTAATG+GGG + chr8_4:51828806-51828825 Msa1332020:CDS 25.0%
!! ACCTTAACAAGTTTTTAACA+AGG + chr8_4:51828909-51828928 Msa1332020:intron 25.0%
! AGTGAAAAAAATTTCAAGGA+TGG - chr8_4:51829472-51829491 None:intergenic 25.0%
!!! CTTGAAATTTTTTTCACTGT+GGG + chr8_4:51829474-51829493 Msa1332020:intron 25.0%
!!! TTGAAATTTTTTTCACTGTG+GGG + chr8_4:51829475-51829494 Msa1332020:intron 25.0%
! GTAAACATTAAACTCTATTC+AGG + chr8_4:51829511-51829530 Msa1332020:intron 25.0%
! AAGTGATGTAATTTATAGTG+TGG + chr8_4:51829601-51829620 Msa1332020:intron 25.0%
! TTATGAATCCTTACTAATTG+AGG + chr8_4:51829767-51829786 Msa1332020:CDS 25.0%
!!! TACACTTTTCTAGTTCATTT+TGG - chr8_4:51829863-51829882 None:intergenic 25.0%
! TAACTTCATTCCAAACAAAT+TGG - chr8_4:51830072-51830091 None:intergenic 25.0%
! TCTATACAAAGGATTAATGA+AGG - chr8_4:51830257-51830276 None:intergenic 25.0%
! ATTGGAAAACTTCTATACAA+AGG - chr8_4:51830268-51830287 None:intergenic 25.0%
!! CAATTTTATTGTTCTCTGAT+GGG + chr8_4:51830284-51830303 Msa1332020:intron 25.0%
!!! ATGCATATCTGAAATTTTGA+TGG + chr8_4:51830578-51830597 Msa1332020:three_prime_UTR 25.0%
! TGTACAATTGAGAATGATAT+TGG + chr8_4:51830743-51830762 Msa1332020:three_prime_UTR 25.0%
! AGAAGTAAAATTCATAGCAA+AGG - chr8_4:51830786-51830805 None:intergenic 25.0%
TGTGAATGTGAAAAATGGAA+GGG - chr8_4:51825649-51825668 None:intergenic 30.0%
TTGTGAATGTGAAAAATGGA+AGG - chr8_4:51825650-51825669 None:intergenic 30.0%
AAGAACATGGTTTCTTTGAT+CGG - chr8_4:51825700-51825719 None:intergenic 30.0%
!! TGTGAATTTAGGGTTTTCTT+GGG - chr8_4:51825794-51825813 None:intergenic 30.0%
TCATCGAAGGAGAAATAATT+AGG - chr8_4:51825913-51825932 None:intergenic 30.0%
GCATTTCATACCTATTTCAA+TGG + chr8_4:51826148-51826167 Msa1332020:CDS 30.0%
AAACTTCTTGCCATTGAAAT+AGG - chr8_4:51826161-51826180 None:intergenic 30.0%
AAACACTTATGAGACTGTTT+GGG - chr8_4:51826416-51826435 None:intergenic 30.0%
TAAACACTTATGAGACTGTT+TGG - chr8_4:51826417-51826436 None:intergenic 30.0%
TGAACACATCTATATGCAAA+AGG - chr8_4:51826541-51826560 None:intergenic 30.0%
CATATAGATGTGTTCAATTC+TGG + chr8_4:51826545-51826564 Msa1332020:intron 30.0%
! AAAACAGGTTTTCATGGAAT+GGG - chr8_4:51827183-51827202 None:intergenic 30.0%
! TATGTCAAAACAGGTTTTCA+TGG - chr8_4:51827189-51827208 None:intergenic 30.0%
TAGAGTTATATTGCCTAACT+AGG + chr8_4:51827327-51827346 Msa1332020:intron 30.0%
CCAAATACGTTCTTAAACTT+TGG - chr8_4:51827444-51827463 None:intergenic 30.0%
CCAAAGTTTAAGAACGTATT+TGG + chr8_4:51827441-51827460 Msa1332020:intron 30.0%
! CTAGGTTGGAAAAAATTGAT+AGG - chr8_4:51827692-51827711 None:intergenic 30.0%
!!! CTATCAATTTTTTCCAACCT+AGG + chr8_4:51827690-51827709 Msa1332020:intron 30.0%
GACATACTTCACTTATTGTT+CGG + chr8_4:51827788-51827807 Msa1332020:intron 30.0%
TAGGGAGAAAATACACTAAA+TGG - chr8_4:51827999-51828018 None:intergenic 30.0%
!!! AACAAAAGCACTGGTTTTAT+TGG + chr8_4:51828229-51828248 Msa1332020:intron 30.0%
!!! AAGCCAACTTGTTTTATTTG+TGG + chr8_4:51828354-51828373 Msa1332020:CDS 30.0%
GTTCCACAAATAAAACAAGT+TGG - chr8_4:51828360-51828379 None:intergenic 30.0%
! TGTATGATTTGTGGATTTGT+CGG + chr8_4:51828399-51828418 Msa1332020:CDS 30.0%
! ACAACAAATTTGGGATTATG+TGG + chr8_4:51828668-51828687 Msa1332020:CDS 30.0%
! CAACAAATTTGGGATTATGT+GGG + chr8_4:51828669-51828688 Msa1332020:CDS 30.0%
!! TTCAACTTTGCTGTTAAAGA+AGG - chr8_4:51828832-51828851 None:intergenic 30.0%
!! GCCTTGTTAAAAACTTGTTA+AGG - chr8_4:51828913-51828932 None:intergenic 30.0%
!! TGTTTGCTGTGTAATTAACA+CGG + chr8_4:51829136-51829155 Msa1332020:intron 30.0%
GATGTGTAAACATTGTTTCA+TGG + chr8_4:51829269-51829288 Msa1332020:intron 30.0%
GCATGTGAAAGAAAAATCAT+CGG - chr8_4:51829349-51829368 None:intergenic 30.0%
! CTCTGTCACTGATTAATTAA+TGG + chr8_4:51829368-51829387 Msa1332020:intron 30.0%
CCACAGTGAAAAAAATTTCA+AGG - chr8_4:51829476-51829495 None:intergenic 30.0%
!!! CCTTGAAATTTTTTTCACTG+TGG + chr8_4:51829473-51829492 Msa1332020:intron 30.0%
GTTTCTTTCACTTATGATGA+AGG + chr8_4:51829637-51829656 Msa1332020:intron 30.0%
AGCAAGCAATAAGGAAATAT+AGG - chr8_4:51829923-51829942 None:intergenic 30.0%
! AAACAAATTGGTAGCTTAAG+TGG - chr8_4:51830060-51830079 None:intergenic 30.0%
! ACTTAAGCTACCAATTTGTT+TGG + chr8_4:51830059-51830078 Msa1332020:intron 30.0%
CCATCAGAGAACAATAAAAT+TGG - chr8_4:51830286-51830305 None:intergenic 30.0%
! CCAATTTTATTGTTCTCTGA+TGG + chr8_4:51830283-51830302 Msa1332020:intron 30.0%
GATAAAATGTCAGACTCAAA+TGG + chr8_4:51830369-51830388 Msa1332020:CDS 30.0%
AGAACACGTATTCGAATTTA+TGG + chr8_4:51830500-51830519 Msa1332020:three_prime_UTR 30.0%
!!! TATGGACTGGTTTAAGTTTT+TGG + chr8_4:51830518-51830537 Msa1332020:three_prime_UTR 30.0%
!!! CATTAACTGTTAGTTTTTCG+TGG + chr8_4:51830870-51830889 Msa1332020:three_prime_UTR 30.0%
! ATATAGAGTTCGTTTGGGTT+TGG - chr8_4:51825598-51825617 None:intergenic 35.0%
!! TTTAGGGTTTTCTTGGGATT+GGG - chr8_4:51825788-51825807 None:intergenic 35.0%
!! ATTTAGGGTTTTCTTGGGAT+TGG - chr8_4:51825789-51825808 None:intergenic 35.0%
!! CTGTGAATTTAGGGTTTTCT+TGG - chr8_4:51825795-51825814 None:intergenic 35.0%
GTGAGAGAGAATTGGAATTA+GGG - chr8_4:51825867-51825886 None:intergenic 35.0%
AGAAATAATTAGGAACAGCG+AGG - chr8_4:51825903-51825922 None:intergenic 35.0%
TCTCCTTCGATGATTTCATT+CGG + chr8_4:51825920-51825939 Msa1332020:CDS 35.0%
AAACCGAATGAAATCATCGA+AGG - chr8_4:51825926-51825945 None:intergenic 35.0%
! GATGATTTCATTCGGTTTTG+TGG + chr8_4:51825928-51825947 Msa1332020:CDS 35.0%
ATGAAGACGATCAAGATAGT+GGG - chr8_4:51825956-51825975 None:intergenic 35.0%
TTCATCATCTTCTCTTCATC+AGG + chr8_4:51825971-51825990 Msa1332020:CDS 35.0%
!!! TTTTGATTTGGTAGGAACGA+TGG + chr8_4:51826070-51826089 Msa1332020:intron 35.0%
!! TTTGATTTGGTAGGAACGAT+GGG + chr8_4:51826071-51826090 Msa1332020:intron 35.0%
!! AGGTAAGTAATAACGGGTTT+GGG + chr8_4:51826191-51826210 Msa1332020:intron 35.0%
!! CAACTTAGTTTGCAGCTTAT+AGG + chr8_4:51826270-51826289 Msa1332020:intron 35.0%
AAGCTATCTTGGACATCTTA+TGG + chr8_4:51826361-51826380 Msa1332020:intron 35.0%
! AAACAGGTTTTCATGGAATG+GGG - chr8_4:51827182-51827201 None:intergenic 35.0%
! CAAAACAGGTTTTCATGGAA+TGG - chr8_4:51827184-51827203 None:intergenic 35.0%
! ATTAGACTCTTAGAGCATCA+TGG + chr8_4:51827241-51827260 Msa1332020:intron 35.0%
! TTAGACTCTTAGAGCATCAT+GGG + chr8_4:51827242-51827261 Msa1332020:intron 35.0%
ATGATTCTTCATGAGAAGCT+TGG + chr8_4:51827281-51827300 Msa1332020:intron 35.0%
CTCACGATAATATCCTAGTT+AGG - chr8_4:51827343-51827362 None:intergenic 35.0%
CTAACTAGGATATTATCGTG+AGG + chr8_4:51827341-51827360 Msa1332020:intron 35.0%
AACGAGTTTGAAAGTTTCTC+AGG + chr8_4:51827397-51827416 Msa1332020:intron 35.0%
!!! ACACTTTTTAAGTCCCAAAG+TGG + chr8_4:51827557-51827576 Msa1332020:intron 35.0%
!!! TTTTTAAGTCCCAAAGTGGA+TGG + chr8_4:51827561-51827580 Msa1332020:intron 35.0%
ACCTTTATACCATCCACTTT+GGG - chr8_4:51827573-51827592 None:intergenic 35.0%
TACCTTTATACCATCCACTT+TGG - chr8_4:51827574-51827593 None:intergenic 35.0%
ATGAGCTTAATATCCTAGGT+TGG - chr8_4:51827706-51827725 None:intergenic 35.0%
ATACTTCACTTATTGTTCGG+AGG + chr8_4:51827791-51827810 Msa1332020:intron 35.0%
CCAGAATGCATTGAATTTCT+GGG + chr8_4:51827838-51827857 Msa1332020:intron 35.0%
! AATGCATTGAATTTCTGGGA+AGG + chr8_4:51827842-51827861 Msa1332020:intron 35.0%
AAGGTAACAACTTCAACACA+TGG + chr8_4:51827939-51827958 Msa1332020:intron 35.0%
TGGAATGTGCAATGATAAGT+TGG - chr8_4:51827965-51827984 None:intergenic 35.0%
! TTCTAAAAAACAAGGAAGGG+CGG + chr8_4:51828071-51828090 Msa1332020:intron 35.0%
CATCCTGTTGTTGACATAAT+CGG - chr8_4:51828332-51828351 None:intergenic 35.0%
TGGAACATTAGATGATGTCT+GGG + chr8_4:51828374-51828393 Msa1332020:CDS 35.0%
! CAGGATCAATCTAGAATTGA+CGG + chr8_4:51828717-51828736 Msa1332020:CDS 35.0%
! TTCACTGTATGTCTCTAGAA+GGG + chr8_4:51828760-51828779 Msa1332020:CDS 35.0%
CTTTAACAGCAAAGTTGAAG+CGG + chr8_4:51828833-51828852 Msa1332020:CDS 35.0%
!! AAAAAGCTTCTCTGAAATCG+TGG + chr8_4:51828870-51828889 Msa1332020:intron 35.0%
AGCAAACAAAATCATACCAC+AGG - chr8_4:51829124-51829143 None:intergenic 35.0%
!! GTTTGCTGTGTAATTAACAC+GGG + chr8_4:51829137-51829156 Msa1332020:intron 35.0%
! TTTGCTGTGTAATTAACACG+GGG + chr8_4:51829138-51829157 Msa1332020:intron 35.0%
TGTCATGTAGACATAGAGAT+AGG + chr8_4:51829191-51829210 Msa1332020:intron 35.0%
ACAACCAAATGTGTGACATT+AGG - chr8_4:51829295-51829314 None:intergenic 35.0%
! TAATGGACATGAACAGATTG+TGG + chr8_4:51829385-51829404 Msa1332020:intron 35.0%
CCAATTGAGATGTAAGAAGA+CGG - chr8_4:51829421-51829440 None:intergenic 35.0%
CTAGTTTCTTGAATGTCAAC+TGG + chr8_4:51829578-51829597 Msa1332020:intron 35.0%
TTCACTTATGATGAAGGCTT+TGG + chr8_4:51829643-51829662 Msa1332020:intron 35.0%
TCACTTATGATGAAGGCTTT+GGG + chr8_4:51829644-51829663 Msa1332020:intron 35.0%
AATTGCTATGATACTCGCAA+TGG + chr8_4:51829669-51829688 Msa1332020:intron 35.0%
ATTGCTATGATACTCGCAAT+GGG + chr8_4:51829670-51829689 Msa1332020:intron 35.0%
ACTTCTTGCCTCAATTAGTA+AGG - chr8_4:51829778-51829797 None:intergenic 35.0%
AGAAAGAAATGTTGTTGCTG+AGG + chr8_4:51829887-51829906 Msa1332020:CDS 35.0%
CAGAGTTAAAGCAAGCAATA+AGG - chr8_4:51829932-51829951 None:intergenic 35.0%
AGATTAAAGAAGCAGAAGAG+AGG + chr8_4:51830023-51830042 Msa1332020:CDS 35.0%
ATTGAAGTCGATGAATGAGA+GGG + chr8_4:51830199-51830218 Msa1332020:CDS 35.0%
GTCAGACTCAAATGGAATAA+AGG + chr8_4:51830377-51830396 Msa1332020:CDS 35.0%
AGACTCAAATGGAATAAAGG+AGG + chr8_4:51830380-51830399 Msa1332020:CDS 35.0%
GACTCAAATGGAATAAAGGA+GGG + chr8_4:51830381-51830400 Msa1332020:CDS 35.0%
AGCAAGAAAAACAGAAAGTC+TGG + chr8_4:51830447-51830466 Msa1332020:CDS 35.0%
ACGTATTCGAATTTATGGAC+TGG + chr8_4:51830505-51830524 Msa1332020:three_prime_UTR 35.0%
!!! GACTGGTTTAAGTTTTTGGA+GGG + chr8_4:51830522-51830541 Msa1332020:three_prime_UTR 35.0%
GATATGCATTAGAACACTCT+TGG - chr8_4:51830567-51830586 None:intergenic 35.0%
CAAAGCAAACAAGTTGCAAT+GGG - chr8_4:51830654-51830673 None:intergenic 35.0%
ACAAAGCAAACAAGTTGCAA+TGG - chr8_4:51830655-51830674 None:intergenic 35.0%
TTTCTCATTACTTCGAGCAT+CGG - chr8_4:51830717-51830736 None:intergenic 35.0%
GGAGAAAGAATAACGCGTTT+GGG - chr8_4:51825679-51825698 None:intergenic 40.0%
CTCTGCGTTCTGTGAATTTA+GGG - chr8_4:51825804-51825823 None:intergenic 40.0%
AGAATTGGAATTAGGGAGAG+AGG - chr8_4:51825860-51825879 None:intergenic 40.0%
GGTGAGAGAGAATTGGAATT+AGG - chr8_4:51825868-51825887 None:intergenic 40.0%
TGAAGACGATCAAGATAGTG+GGG - chr8_4:51825955-51825974 None:intergenic 40.0%
GATGAAGACGATCAAGATAG+TGG - chr8_4:51825957-51825976 None:intergenic 40.0%
CCTGCTGAGGTAAGTAATAA+CGG + chr8_4:51826184-51826203 Msa1332020:intron 40.0%
CTGCTGAGGTAAGTAATAAC+GGG + chr8_4:51826185-51826204 Msa1332020:intron 40.0%
!! GAGGTAAGTAATAACGGGTT+TGG + chr8_4:51826190-51826209 Msa1332020:intron 40.0%
TTTGCTTTCCGTGGAATACT+CGG + chr8_4:51826829-51826848 Msa1332020:CDS 40.0%
TTCACATTCCGAGTATTCCA+CGG - chr8_4:51826840-51826859 None:intergenic 40.0%
! TCTGAGGTGATTATGATGTG+TGG + chr8_4:51826998-51827017 Msa1332020:intron 40.0%
CTGAGGTGATTATGATGTGT+GGG + chr8_4:51826999-51827018 Msa1332020:intron 40.0%
!! GATGTGTGGGTTGATGTTTA+TGG + chr8_4:51827012-51827031 Msa1332020:intron 40.0%
TGCGTATTCCACTTGTATCA+GGG - chr8_4:51827083-51827102 None:intergenic 40.0%
! CTTAGAGCATCATGGGTATT+AGG + chr8_4:51827249-51827268 Msa1332020:intron 40.0%
TCCCAAAGTGGATGGTATAA+AGG + chr8_4:51827569-51827588 Msa1332020:intron 40.0%
GCTCATGAGCTTAATATCCT+AGG - chr8_4:51827710-51827729 None:intergenic 40.0%
GCCAGAATGCATTGAATTTC+TGG + chr8_4:51827837-51827856 Msa1332020:intron 40.0%
CCCAGAAATTCAATGCATTC+TGG - chr8_4:51827841-51827860 None:intergenic 40.0%
! TCGTGACAAGGTATTCGAAT+TGG - chr8_4:51827872-51827891 None:intergenic 40.0%
! TTTCAAGTGAAGTCGTGACA+AGG - chr8_4:51827884-51827903 None:intergenic 40.0%
AAGTTGTTACCTTGACCATG+AGG - chr8_4:51827932-51827951 None:intergenic 40.0%
!!! GGTTTTATTGGTAATGCACG+TGG + chr8_4:51828241-51828260 Msa1332020:intron 40.0%
GTGGAACATTAGATGATGTC+TGG + chr8_4:51828373-51828392 Msa1332020:CDS 40.0%
GTCTGGGTTTGTATGATTTG+TGG + chr8_4:51828390-51828409 Msa1332020:CDS 40.0%
ATTTGTGGATTTGTCGGATG+TGG + chr8_4:51828405-51828424 Msa1332020:CDS 40.0%
CAGGGAAGACTTTAATGCTA+TGG + chr8_4:51828560-51828579 Msa1332020:intron 40.0%
AAGGACATGCTATTCAGCAT+TGG + chr8_4:51828607-51828626 Msa1332020:CDS 40.0%
! TTATGTCCATCGACTGAATC+AGG + chr8_4:51828698-51828717 Msa1332020:CDS 40.0%
ATTGATCCTGATTCAGTCGA+TGG - chr8_4:51828707-51828726 None:intergenic 40.0%
GTTCACTGTATGTCTCTAGA+AGG + chr8_4:51828759-51828778 Msa1332020:CDS 40.0%
! TCACTGTATGTCTCTAGAAG+GGG + chr8_4:51828761-51828780 Msa1332020:CDS 40.0%
!! TTCTCTGAAATCGTGGAGTT+AGG + chr8_4:51828877-51828896 Msa1332020:intron 40.0%
!! TCTCTGAAATCGTGGAGTTA+GGG + chr8_4:51828878-51828897 Msa1332020:intron 40.0%
CTATGTCTACATGACAGTAC+AGG - chr8_4:51829187-51829206 None:intergenic 40.0%
TGTTTACACATCACGTGTGA+CGG - chr8_4:51829261-51829280 None:intergenic 40.0%
ATGGCCTAATGTCACACATT+TGG + chr8_4:51829288-51829307 Msa1332020:intron 40.0%
CCGTCTTCTTACATCTCAAT+TGG + chr8_4:51829418-51829437 Msa1332020:CDS 40.0%
CATTCTGCCCTTAGGTTAAT+CGG + chr8_4:51829966-51829985 Msa1332020:intron 40.0%
TGAGCTTCCGATTAACCTAA+GGG - chr8_4:51829976-51829995 None:intergenic 40.0%
ATGAGCTTCCGATTAACCTA+AGG - chr8_4:51829977-51829996 None:intergenic 40.0%
AAGAAGCAGAAGAGAGGTAA+TGG + chr8_4:51830029-51830048 Msa1332020:intron 40.0%
CATTGAAGTCGATGAATGAG+AGG + chr8_4:51830198-51830217 Msa1332020:CDS 40.0%
ATACCTGTTCCTCCAAATCA+AGG - chr8_4:51830226-51830245 None:intergenic 40.0%
!!! CTGTTTTTCTTGCTGTTTCC+AGG - chr8_4:51830441-51830460 None:intergenic 40.0%
AAAACAGAAAGTCTGGTCGA+AGG + chr8_4:51830454-51830473 Msa1332020:CDS 40.0%
!!! GGACTGGTTTAAGTTTTTGG+AGG + chr8_4:51830521-51830540 Msa1332020:three_prime_UTR 40.0%
! TGCAACTTGTTTGCTTTGTG+TGG + chr8_4:51830656-51830675 Msa1332020:three_prime_UTR 40.0%
! GCAACTTGTTTGCTTTGTGT+GGG + chr8_4:51830657-51830676 Msa1332020:three_prime_UTR 40.0%
! CAACTTGTTTGCTTTGTGTG+GGG + chr8_4:51830658-51830677 Msa1332020:three_prime_UTR 40.0%
ATCAATGAGTAAGCCCTATC+CGG - chr8_4:51830693-51830712 None:intergenic 40.0%
! TAGAGTTCGTTTGGGTTTGG+CGG - chr8_4:51825595-51825614 None:intergenic 45.0%
CGGAGAAAGAATAACGCGTT+TGG - chr8_4:51825680-51825699 None:intergenic 45.0%
CCTCTGCGTTCTGTGAATTT+AGG - chr8_4:51825805-51825824 None:intergenic 45.0%
CCTAAATTCACAGAACGCAG+AGG + chr8_4:51825802-51825821 Msa1332020:CDS 45.0%
GAGAAGAGGTGAGAGAGAAT+TGG - chr8_4:51825875-51825894 None:intergenic 45.0%
ATTTGGTAGGAACGATGGGA+TGG + chr8_4:51826075-51826094 Msa1332020:intron 45.0%
! CAAGAAGTTTTCTCCTGCTG+AGG + chr8_4:51826171-51826190 Msa1332020:CDS 45.0%
CCGTTATTACTTACCTCAGC+AGG - chr8_4:51826187-51826206 None:intergenic 45.0%
TCGGAATGTGAAGAAGTTGC+TGG + chr8_4:51826848-51826867 Msa1332020:CDS 45.0%
CGGAATGTGAAGAAGTTGCT+GGG + chr8_4:51826849-51826868 Msa1332020:CDS 45.0%
ATTTCTGTACAACCAGCTGG+AGG - chr8_4:51826878-51826897 None:intergenic 45.0%
! GGTATTTCTGTACAACCAGC+TGG - chr8_4:51826881-51826900 None:intergenic 45.0%
! ACCAACATGTCCAGTTTGCT+TGG + chr8_4:51826898-51826917 Msa1332020:CDS 45.0%
! CCAACATGTCCAGTTTGCTT+GGG + chr8_4:51826899-51826918 Msa1332020:CDS 45.0%
TGAAACTCACCCAAGCAAAC+TGG - chr8_4:51826911-51826930 None:intergenic 45.0%
CCAAGATCCAAGCAAACAGA+GGG - chr8_4:51826950-51826969 None:intergenic 45.0%
ACCAAGATCCAAGCAAACAG+AGG - chr8_4:51826951-51826970 None:intergenic 45.0%
CGCTGTCTTCAATTTCTCTG+AGG + chr8_4:51826982-51827001 Msa1332020:intron 45.0%
TGTTTGAATCCCAGAGAGAC+TGG + chr8_4:51827056-51827075 Msa1332020:intron 45.0%
GTGCGTATTCCACTTGTATC+AGG - chr8_4:51827084-51827103 None:intergenic 45.0%
!! CGCAAGGGCATTGAAATGAA+TGG - chr8_4:51827119-51827138 None:intergenic 45.0%
!! ATGTCCACTTTGAGACGCAA+GGG - chr8_4:51827134-51827153 None:intergenic 45.0%
!! TATGTCCACTTTGAGACGCA+AGG - chr8_4:51827135-51827154 None:intergenic 45.0%
GTGGACATATTTGTCTTGCC+AGG + chr8_4:51827146-51827165 Msa1332020:CDS 45.0%
AAAAGATGCAACATGGGCGA+TGG + chr8_4:51827654-51827673 Msa1332020:intron 45.0%
AAAGATGCAACATGGGCGAT+GGG + chr8_4:51827655-51827674 Msa1332020:intron 45.0%
ACATGGGCGATGGGAAAAAA+TGG + chr8_4:51827664-51827683 Msa1332020:intron 45.0%
TGTTACCTTGACCATGAGGA+GGG - chr8_4:51827928-51827947 None:intergenic 45.0%
TTGTTACCTTGACCATGAGG+AGG - chr8_4:51827929-51827948 None:intergenic 45.0%
ACAAGGAAGGGCGGAAATTA+AGG + chr8_4:51828080-51828099 Msa1332020:intron 45.0%
! TGCTTCGCTAACAAAAGCAC+TGG + chr8_4:51828220-51828239 Msa1332020:intron 45.0%
! CTGCCGATTATGTCAACAAC+AGG + chr8_4:51828326-51828345 Msa1332020:CDS 45.0%
TAGAATTGACGGCAAGTCGA+AGG + chr8_4:51828728-51828747 Msa1332020:CDS 45.0%
TTGAAGCGGTATGTTTCTCG+TGG + chr8_4:51828847-51828866 Msa1332020:intron 45.0%
AGCGACAAGCTCACTTTAAG+TGG + chr8_4:51829008-51829027 Msa1332020:intron 45.0%
AAATCATACCACAGGTGCAC+AGG - chr8_4:51829116-51829135 None:intergenic 45.0%
! AACACGGGGCTTTATGCATA+AGG + chr8_4:51829152-51829171 Msa1332020:intron 45.0%
CTTCTCCACTGCTTCAGATA+CGG - chr8_4:51829814-51829833 None:intergenic 45.0%
AGACACTTCATTCTGCCCTT+AGG + chr8_4:51829958-51829977 Msa1332020:intron 45.0%
GAATGAGAGGGTCCTTGATT+TGG + chr8_4:51830211-51830230 Msa1332020:CDS 45.0%
!! TTCTTGCTGTTTCCAGGAGA+AGG - chr8_4:51830435-51830454 None:intergenic 45.0%
TTTCCTGTGGCAGTTAAGTC+AGG - chr8_4:51830606-51830625 None:intergenic 45.0%
!!! AGGTGGGCTAATTTTTCCTG+TGG - chr8_4:51830619-51830638 None:intergenic 45.0%
TGGGAGCTGAAATGTAAGGT+GGG - chr8_4:51830635-51830654 None:intergenic 45.0%
ATGGGAGCTGAAATGTAAGG+TGG - chr8_4:51830636-51830655 None:intergenic 45.0%
GCAATGGGAGCTGAAATGTA+AGG - chr8_4:51830639-51830658 None:intergenic 45.0%
TCAATGAGTAAGCCCTATCC+GGG - chr8_4:51830692-51830711 None:intergenic 45.0%
CTTCCTTCCTTCCTTGTGCA+GGG + chr8_4:51825546-51825565 Msa1332020:five_prime_UTR 50.0%
TTCCTTCCTTCCTTGTGCAG+GGG + chr8_4:51825547-51825566 Msa1332020:five_prime_UTR 50.0%
! AGAGTTCGTTTGGGTTTGGC+GGG - chr8_4:51825594-51825613 None:intergenic 50.0%
AAGATGAGTTCGGGATCGAG+TGG - chr8_4:51825754-51825773 None:intergenic 50.0%
TGGAGCGGAGAAGATGAGTT+CGG - chr8_4:51825764-51825783 None:intergenic 50.0%
!! TTCTTGGGATTGGGTTGGAG+CGG - chr8_4:51825779-51825798 None:intergenic 50.0%
! GGGTTTTCTTGGGATTGGGT+TGG - chr8_4:51825784-51825803 None:intergenic 50.0%
ACAGCGAGGATGAAGAGAAG+AGG - chr8_4:51825889-51825908 None:intergenic 50.0%
GGAACGATGGGATGGAAGAT+AGG + chr8_4:51826083-51826102 Msa1332020:intron 50.0%
CCCAAGCAAACTGGACATGT+TGG - chr8_4:51826902-51826921 None:intergenic 50.0%
ATCGTGACCCTCTGTTTGCT+TGG + chr8_4:51826940-51826959 Msa1332020:intron 50.0%
CCCTCTGTTTGCTTGGATCT+TGG + chr8_4:51826947-51826966 Msa1332020:intron 50.0%
TATCAGGGTCCAGTCTCTCT+GGG - chr8_4:51827068-51827087 None:intergenic 50.0%
AGACTGGACCCTGATACAAG+TGG + chr8_4:51827072-51827091 Msa1332020:CDS 50.0%
AATGCCCTTGCGTCTCAAAG+TGG + chr8_4:51827127-51827146 Msa1332020:CDS 50.0%
GAATGGGGAAGCTACATACC+TGG - chr8_4:51827167-51827186 None:intergenic 50.0%
!! TCAATGCATTCTGGCTCGCT+TGG - chr8_4:51827832-51827851 None:intergenic 50.0%
TTACCTTGACCATGAGGAGG+GGG - chr8_4:51827926-51827945 None:intergenic 50.0%
GTTACCTTGACCATGAGGAG+GGG - chr8_4:51827927-51827946 None:intergenic 50.0%
GTGGATTTGTCGGATGTGGA+AGG + chr8_4:51828409-51828428 Msa1332020:CDS 50.0%
AACAAAAGCCTGTGCACCTG+TGG + chr8_4:51829105-51829124 Msa1332020:intron 50.0%
! AAGCTCCGTATCTGAAGCAG+TGG + chr8_4:51829806-51829825 Msa1332020:CDS 50.0%
! CGTATCTGAAGCAGTGGAGA+AGG + chr8_4:51829812-51829831 Msa1332020:CDS 50.0%
!! TGAGAGGGTCCTTGATTTGG+AGG + chr8_4:51830214-51830233 Msa1332020:CDS 50.0%
!! GGTCCTTGATTTGGAGGAAC+AGG + chr8_4:51830220-51830239 Msa1332020:CDS 50.0%
ACAGAAAGTCTGGTCGAAGG+CGG + chr8_4:51830457-51830476 Msa1332020:CDS 50.0%
GTACCTGACTTAACTGCCAC+AGG + chr8_4:51830600-51830619 Msa1332020:three_prime_UTR 50.0%
TTGTGTGGGGATGTAATCCC+CGG + chr8_4:51830671-51830690 Msa1332020:three_prime_UTR 50.0%
CAATGAGTAAGCCCTATCCG+GGG - chr8_4:51830691-51830710 None:intergenic 50.0%
GCTTCCTTCCTTCCTTGTGC+AGG + chr8_4:51825545-51825564 Msa1332020:five_prime_UTR 55.0%
TACCCCTGCACAAGGAAGGA+AGG - chr8_4:51825552-51825571 None:intergenic 55.0%
CAACTACCCCTGCACAAGGA+AGG - chr8_4:51825556-51825575 None:intergenic 55.0%
CTTCCTTGTGCAGGGGTAGT+TGG + chr8_4:51825554-51825573 Msa1332020:five_prime_UTR 55.0%
GTTCCAACTACCCCTGCACA+AGG - chr8_4:51825560-51825579 None:intergenic 55.0%
GTGGACTCGGAGGAAGAACA+TGG - chr8_4:51825713-51825732 None:intergenic 55.0%
! GATTCTCGTCGTCGACTGAG+TGG - chr8_4:51825732-51825751 None:intergenic 55.0%
GGAGCGGAGAAGATGAGTTC+GGG - chr8_4:51825763-51825782 None:intergenic 55.0%
! GAGAGGAGTGTGAAGCGCTT+CGG - chr8_4:51825843-51825862 None:intergenic 55.0%
GTATCAGGGTCCAGTCTCTC+TGG - chr8_4:51827069-51827088 None:intergenic 55.0%
GTGGAGAAGGCTGCAACTTC+TGG + chr8_4:51829825-51829844 Msa1332020:CDS 55.0%
GGAGGGAACAGTCTTACCAG+TGG + chr8_4:51830398-51830417 Msa1332020:CDS 55.0%
GAAGGTTGCTCATGAGCCAC+TGG - chr8_4:51830417-51830436 None:intergenic 55.0%
GCTCATGAGCAACCTTCTCC+TGG + chr8_4:51830420-51830439 Msa1332020:CDS 55.0%
TGGGGATGTAATCCCCGGAT+AGG + chr8_4:51830676-51830695 Msa1332020:three_prime_UTR 55.0%
GGGGATGTAATCCCCGGATA+GGG + chr8_4:51830677-51830696 Msa1332020:three_prime_UTR 55.0%
! CGTCGTCGACTGAGTGGACT+CGG - chr8_4:51825726-51825745 None:intergenic 60.0%
! ACCATGAGGAGGGGGTGCAA+AGG - chr8_4:51827918-51827937 None:intergenic 60.0%
GGCTGCAACTTCTGGCATGC+TGG + chr8_4:51829833-51829852 Msa1332020:CDS 60.0%
! CGTCGACTGAGTGGACTCGG+AGG - chr8_4:51825723-51825742 None:intergenic 65.0%
GTTGCTGGGACTCCTCCAGC+TGG + chr8_4:51826863-51826882 Msa1332020:CDS 65.0%
! GAGGAGGGGGTGCAAAGGCA+AGG - chr8_4:51827913-51827932 None:intergenic 65.0%
GCCTTTGCACCCCCTCCTCA+TGG + chr8_4:51827914-51827933 Msa1332020:intron 65.0%
GCACCCCCTCCTCATGGTCA+AGG + chr8_4:51827920-51827939 Msa1332020:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51825540 51830894 51825540 ID=Msa1332020;Name=Msa1332020
chr8_4 mRNA 51825540 51830894 51825540 ID=Msa1332020-mRNA-1;Parent=Msa1332020;Name=Msa1332020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=172|1|1|1|1|1|11|409|480
chr8_4 exon 51825540 51825992 51825540 ID=Msa1332020-mRNA-1:exon:15383;Parent=Msa1332020-mRNA-1
chr8_4 exon 51826084 51826192 51826084 ID=Msa1332020-mRNA-1:exon:15384;Parent=Msa1332020-mRNA-1
chr8_4 exon 51826806 51826920 51826806 ID=Msa1332020-mRNA-1:exon:15385;Parent=Msa1332020-mRNA-1
chr8_4 exon 51827070 51827167 51827070 ID=Msa1332020-mRNA-1:exon:15386;Parent=Msa1332020-mRNA-1
chr8_4 exon 51828324 51828430 51828324 ID=Msa1332020-mRNA-1:exon:15387;Parent=Msa1332020-mRNA-1
chr8_4 exon 51828599 51828854 51828599 ID=Msa1332020-mRNA-1:exon:15388;Parent=Msa1332020-mRNA-1
chr8_4 exon 51829401 51829454 51829401 ID=Msa1332020-mRNA-1:exon:15389;Parent=Msa1332020-mRNA-1
chr8_4 exon 51829765 51829908 51829765 ID=Msa1332020-mRNA-1:exon:15390;Parent=Msa1332020-mRNA-1
chr8_4 exon 51829980 51830044 51829980 ID=Msa1332020-mRNA-1:exon:15391;Parent=Msa1332020-mRNA-1
chr8_4 exon 51830187 51830241 51830187 ID=Msa1332020-mRNA-1:exon:15392;Parent=Msa1332020-mRNA-1
chr8_4 exon 51830327 51830894 51830327 ID=Msa1332020-mRNA-1:exon:15393;Parent=Msa1332020-mRNA-1
chr8_4 five_prime_UTR 51825540 51825711 51825540 ID=Msa1332020-mRNA-1:five_prime_utr;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51825712 51825992 51825712 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51826084 51826192 51826084 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51826806 51826920 51826806 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51827070 51827167 51827070 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51828324 51828430 51828324 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51828599 51828854 51828599 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51829401 51829454 51829401 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51829765 51829908 51829765 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51829980 51830044 51829980 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51830187 51830241 51830187 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 CDS 51830327 51830485 51830327 ID=Msa1332020-mRNA-1:cds;Parent=Msa1332020-mRNA-1
chr8_4 three_prime_UTR 51830486 51830894 51830486 ID=Msa1332020-mRNA-1:three_prime_utr;Parent=Msa1332020-mRNA-1
Gene Sequence

>Msa1332020

ATGTTCTTCCTCCGAGTCCACTCAGTCGACGACGAGAATCCACTCGATCCCGAACTCATCTTCTCCGCTCCAACCCAATCCCAAGAAAACCCTAAATTCACAGAACGCAGAGGCGTTCTTCATCTCTTCCGAAGCGCTTCACACTCCTCTCTCCCTAATTCCAATTCTCTCTCACCTCTTCTCTTCATCCTCGCTGTTCCTAATTATTTCTCCTTCGATGATTTCATTCGGTTTTGTGGTCCCCACTATCTTGATCGTCTTCATCATCTTCTCTTCATCAGGAACGATGGGATGGAAGATAGGTATAGTGTTTTGATTAGGTTTGATGATCAGCTTGCTGCTGATGCATTTCATACCTATTTCAATGGCAAGAAGTTTTCTCCTGCTGAGGCAGAGATATGCCATATTTTATTTTTGCTTTCCGTGGAATACTCGGAATGTGAAGAAGTTGCTGGGACTCCTCCAGCTGGTTGTACAGAAATACCAACATGTCCAGTTTGCTTGGAGAGACTGGACCCTGATACAAGTGGAATACGCACAACACTTTGTGACCATTCATTTCAATGCCCTTGCGTCTCAAAGTGGACATATTTGTCTTGCCAGGTCTGCCGATTATGTCAACAACAGGATGAGAAGCCAACTTGTTTTATTTGTGGAACATTAGATGATGTCTGGGTTTGTATGATTTGTGGATTTGTCGGATGTGGAAGATATAAAGAAGGACATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAGAACACAACAAATTTGGGATTATGTGGGTGACAATTATGTCCATCGACTGAATCAGGATCAATCTAGAATTGACGGCAAGTCGAAGGAGATGCATGTTCACTGTATGTCTCTAGAAGGGGATTGTGACACATGTGAATGTAGTGAAGATTTAGAAGTTAATGGGGCCTTCTTTAACAGCAAAGTTGAAGCGATTGTGGATGAATACAACCGTCTTCTTACATCTCAATTGGAGACTCAAAGACAATATTATGAATCCTTACTAATTGAGGCAAGAAGTAAAGAAGAAAGCTCCGTATCTGAAGCAGTGGAGAAGGCTGCAACTTCTGGCATGCTGGATATCCAAAATGAACTAGAAAAGTGTACAGAAGAAAGAAATGTTGTTGCTGAGGTTAATCGGAAGCTCATTAAAAATTCAGAAATGTGGCGAAAGAAGATTAAAGAAGCAGAAGAGAGGGAAGCTACATCATTGAAGTCGATGAATGAGAGGGTCCTTGATTTGGAGGAACAGATAAGAGATATCACGATTTTTCTACAAGCACAAAAAACAATTGATAAAATGTCAGACTCAAATGGAATAAAGGAGGGAACAGTCTTACCAGTGGCTCATGAGCAACCTTCTCCTGGAAACAGCAAGAAAAACAGAAAGTCTGGTCGAAGGCGGCGTTAG

Protein sequence

>Msa1332020

MFFLRVHSVDDENPLDPELIFSAPTQSQENPKFTERRGVLHLFRSASHSSLPNSNSLSPLLFILAVPNYFSFDDFIRFCGPHYLDRLHHLLFIRNDGMEDRYSVLIRFDDQLAADAFHTYFNGKKFSPAEAEICHILFLLSVEYSECEEVAGTPPAGCTEIPTCPVCLERLDPDTSGIRTTLCDHSFQCPCVSKWTYLSCQVCRLCQQQDEKPTCFICGTLDDVWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFRTQQIWDYVGDNYVHRLNQDQSRIDGKSKEMHVHCMSLEGDCDTCECSEDLEVNGAFFNSKVEAIVDEYNRLLTSQLETQRQYYESLLIEARSKEESSVSEAVEKAATSGMLDIQNELEKCTEERNVVAEVNRKLIKNSEMWRKKIKEAEEREATSLKSMNERVLDLEEQIRDITIFLQAQKTIDKMSDSNGIKEGTVLPVAHEQPSPGNSKKNRKSGRRRR*