AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582040 MtrunA17_Chr4g0047771 98.361 183 3 0 1 183 1 183 1.22e-131 366
Msa0582040 MtrunA17_Chr2g0318011 59.064 171 69 1 1 170 1 171 2.30e-62 191
Msa0582040 MtrunA17_Chr5g0423771 47.904 167 84 2 2 166 6 171 5.02e-53 167
Msa0582040 MtrunA17_Chr1g0209281 43.373 166 93 1 3 167 4 169 6.81e-42 139
Msa0582040 MtrunA17_Chr1g0209321 34.132 167 102 4 3 167 5 165 2.30e-18 78.6
Msa0582040 MtrunA17_Chr4g0039411 27.607 163 114 3 9 170 11 170 1.22e-12 63.5
Msa0582040 MtrunA17_Chr1g0209311 36.842 95 58 2 4 98 6 98 2.17e-12 60.5
Msa0582040 MtrunA17_Chr1g0209301 44.615 65 36 0 101 165 18 82 9.99e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582040 AT1G61065.1 67.760 183 56 2 1 183 1 180 1.99e-77 229
Msa0582040 AT4G27435.1 57.803 173 72 1 1 172 1 173 4.38e-71 213
Msa0582040 AT1G52910.1 52.299 174 81 2 1 172 1 174 2.13e-63 193
Msa0582040 AT3G15480.1 50.289 173 84 2 1 171 1 173 3.40e-59 183
Msa0582040 AT1G13380.1 43.716 183 96 4 2 183 6 182 7.07e-46 149
Msa0582040 AT1G68220.1 38.953 172 103 2 6 175 7 178 1.36e-37 129
Msa0582040 AT5G17210.1 29.379 177 116 5 9 180 11 183 3.39e-14 68.2

Find 66 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGGTCTTTAATTAAATT+TGG 0.118983 4_1:+87634820 Msa0582040:three_prime_UTR
TATGGCTTCTTCTCTGTTAC+TGG 0.161308 4_1:+87630732 Msa0582040:exon
ACTTTCTACCTTCAGTGTTT+TGG 0.167759 4_1:-87633611 None:intergenic
CACAAAGTATAGAGATTTAT+TGG 0.188851 4_1:+87634480 Msa0582040:CDS
GCAGCTTTCATTGTTCTTAC+AGG 0.247267 4_1:+87634556 Msa0582040:CDS
ACCTTGAGGAAAGGAGTATT+TGG 0.252984 4_1:+87634526 Msa0582040:CDS
TGCAATGTATCCCACTTATT+AGG 0.298115 4_1:+87634685 Msa0582040:three_prime_UTR
TGAATCGATCCAATAATAAA+AGG 0.305268 4_1:-87629211 None:intergenic
TTCTTCTCTGTTACTGGTTG+TGG 0.346559 4_1:+87630738 Msa0582040:CDS
TATTAACATGGCTTATTACA+TGG 0.366910 4_1:+87634729 Msa0582040:three_prime_UTR
AAACAAATAAAAGTGGAGTT+TGG 0.375414 4_1:-87629153 None:intergenic
TTCCTCAAGGTTTGACATGA+AGG 0.384581 4_1:-87634514 None:intergenic
TTGCCACCGGCCTAGGTGTT+GGG 0.395204 4_1:+87633655 Msa0582040:CDS
TCTGACATTGCCACCGGCCT+AGG 0.400328 4_1:+87633648 Msa0582040:CDS
TAAACAAATTGCCCATGATC+TGG 0.409000 4_1:-87633766 None:intergenic
ACAAAGTATAGAGATTTATT+GGG 0.411928 4_1:+87634481 Msa0582040:CDS
ATTGCCACCGGCCTAGGTGT+TGG 0.437881 4_1:+87633654 Msa0582040:CDS
TGCAAGTCAAGTGATCATTA+TGG 0.441738 4_1:+87633695 Msa0582040:CDS
AATTAAAATTAAAATGCGTA+GGG 0.451291 4_1:+87629322 Msa0582040:five_prime_UTR
GTATCCCACTTATTAGGACT+TGG 0.459619 4_1:+87634691 Msa0582040:three_prime_UTR
ACTAATTAAAGTAAGTAAGC+TGG 0.471943 4_1:-87630508 None:intergenic
GACCTAGTGGATCCAGATCA+TGG 0.481470 4_1:+87633754 Msa0582040:CDS
ATTACACAAACAAATAAAAG+TGG 0.492052 4_1:-87629160 None:intergenic
CTGTTGCTGCTGAGCAGAGA+AGG 0.494310 4_1:+87630794 Msa0582040:CDS
TTTGTTTAGAGTTTAGACTA+TGG 0.496787 4_1:+87634803 Msa0582040:three_prime_UTR
TCCTCCCAAGTCCTAATAAG+TGG 0.503114 4_1:-87634696 None:intergenic
CTAATTAAAGTAAGTAAGCT+GGG 0.511849 4_1:-87630507 None:intergenic
GACTTGCAACAAGGATAAAG+AGG 0.511852 4_1:-87633680 None:intergenic
TAATTAAAATTAAAATGCGT+AGG 0.516023 4_1:+87629321 Msa0582040:five_prime_UTR
AGGAAAGGAGTATTTGGAGC+TGG 0.522435 4_1:+87634532 Msa0582040:CDS
GCTGCGTCATGTCTTCTAGC+GGG 0.522839 4_1:+87634436 Msa0582040:CDS
TAACTAGATGCTTGTGCTGT+GGG 0.523620 4_1:+87633721 Msa0582040:CDS
CTACTTGTAATTATGAAGCT+AGG 0.525615 4_1:+87634769 Msa0582040:three_prime_UTR
TCCAAATACTCCTTTCCTCA+AGG 0.531125 4_1:-87634527 None:intergenic
TAAAAGGAAAAGTATTGAAG+TGG 0.540145 4_1:-87629195 None:intergenic
AGATCTTGAGCTGATAGCTA+TGG 0.543948 4_1:+87630714 Msa0582040:intron
TATTACATGGATGTGAATTG+TGG 0.545400 4_1:+87634742 Msa0582040:three_prime_UTR
ATTACATGGATGTGAATTGT+GGG 0.545568 4_1:+87634743 Msa0582040:three_prime_UTR
GAGGGACCCAACACCTAGGC+CGG 0.547158 4_1:-87633661 None:intergenic
TTAAATTTACAAATTACTCA+TGG 0.553734 4_1:-87634662 None:intergenic
GTAACTAGATGCTTGTGCTG+TGG 0.554303 4_1:+87633720 Msa0582040:CDS
TGCTGCGTCATGTCTTCTAG+CGG 0.556620 4_1:+87634435 Msa0582040:CDS
TCTGGATCCACTAGGTCTCA+TGG 0.558877 4_1:-87633748 None:intergenic
TATCCCACTTATTAGGACTT+GGG 0.559751 4_1:+87634692 Msa0582040:three_prime_UTR
ACCTAGTGGATCCAGATCAT+GGG 0.563046 4_1:+87633755 Msa0582040:CDS
CACACCTGTGTCTCTAGCAT+AGG 0.565825 4_1:-87634638 None:intergenic
ACACCTGTGTCTCTAGCATA+GGG 0.569459 4_1:-87634637 None:intergenic
ATAAATCTCTATACTTTGTG+TGG 0.577844 4_1:-87634477 None:intergenic
TTTGTTTATTCATCACTACC+TGG 0.599794 4_1:+87633781 Msa0582040:CDS
CCTCCCAAGTCCTAATAAGT+GGG 0.602425 4_1:-87634695 None:intergenic
TATGATTCTGACATTGCCAC+CGG 0.606011 4_1:+87633642 Msa0582040:CDS
TCATGTCAAACCTTGAGGAA+AGG 0.610389 4_1:+87634517 Msa0582040:CDS
CACCTTCATGTCAAACCTTG+AGG 0.611145 4_1:+87634512 Msa0582040:CDS
CCTCCCTATGCTAGAGACAC+AGG 0.615801 4_1:+87634634 Msa0582040:CDS
GGGAGAGCCATGAGACCTAG+TGG 0.628075 4_1:+87633741 Msa0582040:CDS
ATTAAAATTAAAATGCGTAG+GGG 0.638511 4_1:+87629323 Msa0582040:five_prime_UTR
CCCACTTATTAGGACTTGGG+AGG 0.638775 4_1:+87634695 Msa0582040:three_prime_UTR
GGACCCAACACCTAGGCCGG+TGG 0.639370 4_1:-87633658 None:intergenic
ACTTGCAACAAGGATAAAGA+GGG 0.642274 4_1:-87633679 None:intergenic
CTGTGTCTCTAGCATAGGGA+GGG 0.646357 4_1:-87634633 None:intergenic
AATTTAGCCCAAAACACTGA+AGG 0.648878 4_1:+87633603 Msa0582040:CDS
TAAAGAGGGACCCAACACCT+AGG 0.661021 4_1:-87633665 None:intergenic
GAAGTGTGTTACTATTAACA+TGG 0.662483 4_1:+87634717 Msa0582040:three_prime_UTR
GCCCATGATCTGGATCCACT+AGG 0.663327 4_1:-87633756 None:intergenic
TGATCACTTGACTTGCAACA+AGG 0.664373 4_1:-87633689 None:intergenic
CCTGTGTCTCTAGCATAGGG+AGG 0.667869 4_1:-87634634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTTAATTTTG+TGG + chr4_1:87630689-87630708 Msa0582040:intron 10.0%
!!! AACTTTAAATAGATTTTTAA+CGG - chr4_1:87630876-87630895 None:intergenic 10.0%
!!! ACATTTGATTTTAAATATAA+GGG - chr4_1:87632357-87632376 None:intergenic 10.0%
!! AAAAAAAACATAAAATTTCT+AGG + chr4_1:87632807-87632826 Msa0582040:intron 10.0%
!!! AATACAATATTTTATACTAT+TGG - chr4_1:87632849-87632868 None:intergenic 10.0%
!! TAAAAAAAAAACATAATTAC+GGG - chr4_1:87634178-87634197 None:intergenic 10.0%
!!! TTAAACAATAAAATATTTTG+AGG + chr4_1:87634300-87634319 Msa0582040:intron 10.0%
!!! AATACTTTTCCTTTTATTAT+TGG + chr4_1:87629202-87629221 Msa0582040:five_prime_UTR 15.0%
!! TAATTAAAATTAAAATGCGT+AGG + chr4_1:87629321-87629340 Msa0582040:five_prime_UTR 15.0%
!! AATTAAAATTAAAATGCGTA+GGG + chr4_1:87629322-87629341 Msa0582040:five_prime_UTR 15.0%
!!! TTTAACATTTTTTAATCTTG+TGG - chr4_1:87629469-87629488 None:intergenic 15.0%
!! TTCAATTGAAAATACTAATA+TGG - chr4_1:87629748-87629767 None:intergenic 15.0%
!! AATTAAAACACTAAAAAACT+TGG + chr4_1:87630470-87630489 Msa0582040:five_prime_UTR 15.0%
!!! TAGAGAATTAAAATTGATTT+TGG - chr4_1:87631383-87631402 None:intergenic 15.0%
!!! AATCAAATATCTAATTTTCT+CGG - chr4_1:87631807-87631826 None:intergenic 15.0%
!!! GACATTTGATTTTAAATATA+AGG - chr4_1:87632358-87632377 None:intergenic 15.0%
!!! ATTGATTTCATAAGTTATTA+TGG + chr4_1:87633147-87633166 Msa0582040:intron 15.0%
!!! AATGTTTCTAATGTTAAAAT+TGG + chr4_1:87633532-87633551 Msa0582040:intron 15.0%
!!! TTATTTGTTTTTCTAATAAC+AGG + chr4_1:87633578-87633597 Msa0582040:intron 15.0%
!!! ATTTTTAGCAATAATTAGTT+TGG + chr4_1:87633826-87633845 Msa0582040:intron 15.0%
!! AAAAGATATAACATAATTAC+GGG - chr4_1:87634210-87634229 None:intergenic 15.0%
!! GAAAAGATATAACATAATTA+CGG - chr4_1:87634211-87634230 None:intergenic 15.0%
!! TTAAATTTACAAATTACTCA+TGG - chr4_1:87634665-87634684 None:intergenic 15.0%
!! ATTACACAAACAAATAAAAG+TGG - chr4_1:87629163-87629182 None:intergenic 20.0%
!! ATTAAAATTAAAATGCGTAG+GGG + chr4_1:87629323-87629342 Msa0582040:five_prime_UTR 20.0%
!! ATTTAATACATGGTTCAAAT+TGG + chr4_1:87629412-87629431 Msa0582040:intron 20.0%
!! CAAGATATCTTATGTAAATT+GGG - chr4_1:87629492-87629511 None:intergenic 20.0%
!! AAATTGAATAAATTGAGATG+GGG - chr4_1:87629890-87629909 None:intergenic 20.0%
!! GAAATTGAATAAATTGAGAT+GGG - chr4_1:87629891-87629910 None:intergenic 20.0%
!! TGAAATTGAATAAATTGAGA+TGG - chr4_1:87629892-87629911 None:intergenic 20.0%
!! TTGAAATTGAGTAAATTGTT+AGG - chr4_1:87629928-87629947 None:intergenic 20.0%
!!! TGTCTTGTTTTGTTTTTATT+TGG + chr4_1:87630575-87630594 Msa0582040:intron 20.0%
!! CAAGTTAGAATTAATAATAG+AGG + chr4_1:87631323-87631342 Msa0582040:intron 20.0%
!! TTCAAAAAAAATCTCTTTAG+AGG - chr4_1:87632145-87632164 None:intergenic 20.0%
!!! TCTAAAGAGATTTTTTTTGA+AGG + chr4_1:87632144-87632163 Msa0582040:intron 20.0%
!!! TGTTTCCATTTATTTTATTG+AGG - chr4_1:87632225-87632244 None:intergenic 20.0%
!! TATACACACTTATCATAAAA+GGG + chr4_1:87633079-87633098 Msa0582040:intron 20.0%
!! ATTTAAAAAATTGAAAGCAG+AGG + chr4_1:87633225-87633244 Msa0582040:intron 20.0%
!! AATCTGAACATTCATATTTA+AGG + chr4_1:87634007-87634026 Msa0582040:intron 20.0%
!! TCATATTTAAGGACAAATAT+TGG + chr4_1:87634018-87634037 Msa0582040:intron 20.0%
!! GAAAGAAGTCATATAAAAAA+GGG - chr4_1:87634117-87634136 None:intergenic 20.0%
!! TGAAAGAAGTCATATAAAAA+AGG - chr4_1:87634118-87634137 None:intergenic 20.0%
!! ACAAAGTATAGAGATTTATT+GGG + chr4_1:87634481-87634500 Msa0582040:CDS 20.0%
!!! AGTTTTTCAAAAGCTAATAA+TGG + chr4_1:87634604-87634623 Msa0582040:CDS 20.0%
!! CTATGGTCTTTAATTAAATT+TGG + chr4_1:87634820-87634839 Msa0582040:three_prime_UTR 20.0%
! AAACAAATAAAAGTGGAGTT+TGG - chr4_1:87629156-87629175 None:intergenic 25.0%
!!! TAAAAGGAAAAGTATTGAAG+TGG - chr4_1:87629198-87629217 None:intergenic 25.0%
! TGAATCGATCCAATAATAAA+AGG - chr4_1:87629214-87629233 None:intergenic 25.0%
! CATGTATTAAATTGAATGGT+TGG - chr4_1:87629404-87629423 None:intergenic 25.0%
! CAACCATTCAATTTAATACA+TGG + chr4_1:87629402-87629421 Msa0582040:intron 25.0%
! GAACCATGTATTAAATTGAA+TGG - chr4_1:87629408-87629427 None:intergenic 25.0%
!! AATCTTGTGGTTTTTCATTA+TGG - chr4_1:87629456-87629475 None:intergenic 25.0%
! GCAAGATATCTTATGTAAAT+TGG - chr4_1:87629493-87629512 None:intergenic 25.0%
! AAAGTTAAACATGAGAAACA+GGG - chr4_1:87629585-87629604 None:intergenic 25.0%
! AAAAGTTAAACATGAGAAAC+AGG - chr4_1:87629586-87629605 None:intergenic 25.0%
! AAATACATGTGTATCTCAAT+GGG - chr4_1:87629621-87629640 None:intergenic 25.0%
! AAAATACATGTGTATCTCAA+TGG - chr4_1:87629622-87629641 None:intergenic 25.0%
! TTTCAATTTATTCAACTCCA+TGG - chr4_1:87629866-87629885 None:intergenic 25.0%
! CATGGTTAAAGAAAATTGTT+AGG - chr4_1:87629951-87629970 None:intergenic 25.0%
! AAAATGAGAAAGATTGATGA+TGG + chr4_1:87630278-87630297 Msa0582040:intron 25.0%
! CTAATTAAAGTAAGTAAGCT+GGG - chr4_1:87630510-87630529 None:intergenic 25.0%
! ACTAATTAAAGTAAGTAAGC+TGG - chr4_1:87630511-87630530 None:intergenic 25.0%
! TTTATTAGAATAGAACAACC+TGG - chr4_1:87630627-87630646 None:intergenic 25.0%
! GTCACAAAAGATATAAAAAC+AGG - chr4_1:87630658-87630677 None:intergenic 25.0%
!!! TTTCTAGTTTTCCTTTACTT+AGG + chr4_1:87630966-87630985 Msa0582040:intron 25.0%
!! ACTTACAAAATTTTCGATTG+GGG - chr4_1:87631143-87631162 None:intergenic 25.0%
!! GACTTACAAAATTTTCGATT+GGG - chr4_1:87631144-87631163 None:intergenic 25.0%
!! AGACTTACAAAATTTTCGAT+TGG - chr4_1:87631145-87631164 None:intergenic 25.0%
!! AAATTTTGTAAGTCTGTGTT+TGG + chr4_1:87631150-87631169 Msa0582040:intron 25.0%
! TAACTGATTGTAATTACAAG+TGG + chr4_1:87631201-87631220 Msa0582040:intron 25.0%
! AGTCACTTGAACAATAAATT+AGG + chr4_1:87631253-87631272 Msa0582040:intron 25.0%
! GTCACTTGAACAATAAATTA+GGG + chr4_1:87631254-87631273 Msa0582040:intron 25.0%
! TGTAAAAATCACACGATTTA+GGG + chr4_1:87631277-87631296 Msa0582040:intron 25.0%
!!! AAAATTGATTTTGGCATGTT+TGG - chr4_1:87631374-87631393 None:intergenic 25.0%
!! AACAACTCTTTTCAATTAAG+TGG - chr4_1:87631435-87631454 None:intergenic 25.0%
!! CAGAAAGAAGATTAGTTAAT+GGG - chr4_1:87631466-87631485 None:intergenic 25.0%
! AACAGAATCTATTCTCATAT+TGG - chr4_1:87631873-87631892 None:intergenic 25.0%
! GTTGTAATTAACAAGCAAAT+AGG + chr4_1:87631899-87631918 Msa0582040:intron 25.0%
! GACACAATAATGACATAATA+CGG + chr4_1:87631924-87631943 Msa0582040:intron 25.0%
!! AAATCCTCTAAAGAGATATT+TGG + chr4_1:87632168-87632187 Msa0582040:intron 25.0%
!! TTTTATTGAGGAGCTAATTA+AGG - chr4_1:87632213-87632232 None:intergenic 25.0%
! TAGCTCCTCAATAAAATAAA+TGG + chr4_1:87632217-87632236 Msa0582040:intron 25.0%
! AAATAAATGGAAACAGCTTA+TGG + chr4_1:87632230-87632249 Msa0582040:intron 25.0%
! TTATTCAATGAGCTTATCAT+AGG - chr4_1:87632265-87632284 None:intergenic 25.0%
! TATAAGGGTGAAAAAATGTA+GGG - chr4_1:87632342-87632361 None:intergenic 25.0%
! ATATAAGGGTGAAAAAATGT+AGG - chr4_1:87632343-87632362 None:intergenic 25.0%
! CATCAAAAACTTAGTCATAA+AGG + chr4_1:87632383-87632402 Msa0582040:intron 25.0%
! GAGTTTGTAAATTCAATAAC+AGG - chr4_1:87632417-87632436 None:intergenic 25.0%
! TTACAAGTTCTTTCACAAAA+TGG - chr4_1:87632480-87632499 None:intergenic 25.0%
!! ATTTTGTGAAAGAACTTGTA+AGG + chr4_1:87632479-87632498 Msa0582040:intron 25.0%
!! GTTTAGTTCAATGAGTTTAA+TGG - chr4_1:87632586-87632605 None:intergenic 25.0%
! CATAATCTTAATCCTAAGTT+CGG - chr4_1:87632608-87632627 None:intergenic 25.0%
! GTGTTTGAATCATTTATACT+TGG - chr4_1:87632639-87632658 None:intergenic 25.0%
!! AAACATAAAATTTCTAGGTG+AGG + chr4_1:87632812-87632831 Msa0582040:intron 25.0%
! GTATACACACTTATCATAAA+AGG + chr4_1:87633078-87633097 Msa0582040:intron 25.0%
! AGGCAAAGTAATAATTATTG+TGG - chr4_1:87633391-87633410 None:intergenic 25.0%
! ATTATTACTTTGCCTATAGT+TGG + chr4_1:87633396-87633415 Msa0582040:intron 25.0%
! TTATTACTTTGCCTATAGTT+GGG + chr4_1:87633397-87633416 Msa0582040:intron 25.0%
! AATATGAATGTTCAGATTGT+CGG - chr4_1:87634005-87634024 None:intergenic 25.0%
! AAACATAATTACGGGTATAT+TGG - chr4_1:87634170-87634189 None:intergenic 25.0%
! GTAACATGTGATAAATTCTA+TGG + chr4_1:87634233-87634252 Msa0582040:intron 25.0%
! ACAAGAGAAAACATCAAATT+TGG - chr4_1:87634353-87634372 None:intergenic 25.0%
! ATAAATCTCTATACTTTGTG+TGG - chr4_1:87634480-87634499 None:intergenic 25.0%
! CACAAAGTATAGAGATTTAT+TGG + chr4_1:87634480-87634499 Msa0582040:CDS 25.0%
!! TTTTCAAAAGCTAATAATGG+TGG + chr4_1:87634607-87634626 Msa0582040:CDS 25.0%
! TATTAACATGGCTTATTACA+TGG + chr4_1:87634729-87634748 Msa0582040:three_prime_UTR 25.0%
!! TTTGTTTAGAGTTTAGACTA+TGG + chr4_1:87634803-87634822 Msa0582040:three_prime_UTR 25.0%
!! GATTCACGTACTTTTAGAAA+TGG + chr4_1:87629228-87629247 Msa0582040:five_prime_UTR 30.0%
AAACAGAACCTTACAAATTG+GGG - chr4_1:87629515-87629534 None:intergenic 30.0%
GAAACAGAACCTTACAAATT+GGG - chr4_1:87629516-87629535 None:intergenic 30.0%
AGAAACAGAACCTTACAAAT+TGG - chr4_1:87629517-87629536 None:intergenic 30.0%
CTTTCATCTTGAATAAACCA+TGG + chr4_1:87629846-87629865 Msa0582040:intron 30.0%
! TGTTTTCCATCAATGTGATT+CGG + chr4_1:87630116-87630135 Msa0582040:intron 30.0%
AAGAAGATTAAAGGCAAGAT+TGG + chr4_1:87630312-87630331 Msa0582040:intron 30.0%
AGAAGATTAAAGGCAAGATT+GGG + chr4_1:87630313-87630332 Msa0582040:intron 30.0%
! GAATCGTGGATTAAATCAAA+TGG + chr4_1:87630366-87630385 Msa0582040:intron 30.0%
! GTACTTGCTTGAAATTTGTT+TGG + chr4_1:87630600-87630619 Msa0582040:intron 30.0%
AAGAACTATCAAAACAGTTG+AGG - chr4_1:87631082-87631101 None:intergenic 30.0%
GTGTAAAAATCACACGATTT+AGG + chr4_1:87631276-87631295 Msa0582040:intron 30.0%
! TCAATTAAGTGGTTCACTTT+TGG - chr4_1:87631424-87631443 None:intergenic 30.0%
! CCAGAAAGAAGATTAGTTAA+TGG - chr4_1:87631467-87631486 None:intergenic 30.0%
CCATTAACTAATCTTCTTTC+TGG + chr4_1:87631464-87631483 Msa0582040:intron 30.0%
TATCACCAAAACTTATAGAC+TGG + chr4_1:87631488-87631507 Msa0582040:intron 30.0%
ATCACCAAAACTTATAGACT+GGG + chr4_1:87631489-87631508 Msa0582040:intron 30.0%
CAATCATTCCAAAGCATAAA+AGG - chr4_1:87631520-87631539 None:intergenic 30.0%
!!! CTTTTATGCTTTGGAATGAT+TGG + chr4_1:87631518-87631537 Msa0582040:intron 30.0%
TAATGCTGTAAACTGAATTC+TGG + chr4_1:87631588-87631607 Msa0582040:intron 30.0%
GTTTAGAAATGTAGAAAAGC+TGG + chr4_1:87631719-87631738 Msa0582040:intron 30.0%
AATGTAGAAAAGCTGGATAT+AGG + chr4_1:87631726-87631745 Msa0582040:intron 30.0%
! AAGTACAAAATTTTGTCGTG+TGG + chr4_1:87631837-87631856 Msa0582040:intron 30.0%
GTAATTAACAAGCAAATAGG+TGG + chr4_1:87631902-87631921 Msa0582040:intron 30.0%
! AGATAGATGGTTGATATTCA+TGG + chr4_1:87631956-87631975 Msa0582040:intron 30.0%
! CTCTAAAGAGATATTTGGAA+GGG + chr4_1:87632173-87632192 Msa0582040:intron 30.0%
! ATATTTGGAAGGGTTTGTTT+AGG + chr4_1:87632183-87632202 Msa0582040:intron 30.0%
ATAAGGGTGAAAAAATGTAG+GGG - chr4_1:87632341-87632360 None:intergenic 30.0%
!!! TGGTTTTGTAAGAGATTAAG+AGG + chr4_1:87632449-87632468 Msa0582040:intron 30.0%
ACATTAATAGCACTAGATGT+TGG - chr4_1:87632519-87632538 None:intergenic 30.0%
AAACACAACTTTATATCTCC+CGG + chr4_1:87632653-87632672 Msa0582040:intron 30.0%
! TTTTTCCTTCTCAAAAAACC+TGG - chr4_1:87632789-87632808 None:intergenic 30.0%
CAGTTAATTAAGCTGCTTAT+CGG - chr4_1:87633052-87633071 None:intergenic 30.0%
TGTGTACACAAGTCAATATT+AGG - chr4_1:87633366-87633385 None:intergenic 30.0%
AATGAAGAGACTGAGTTATA+GGG - chr4_1:87633432-87633451 None:intergenic 30.0%
AAATGAAGAGACTGAGTTAT+AGG - chr4_1:87633433-87633452 None:intergenic 30.0%
TTTGTTTATTCATCACTACC+TGG + chr4_1:87633781-87633800 Msa0582040:CDS 30.0%
! ATGTTTGTTGACAATGAGTT+TGG + chr4_1:87633886-87633905 Msa0582040:intron 30.0%
! TTTAGAGCTTCATAGAATCA+CGG - chr4_1:87633928-87633947 None:intergenic 30.0%
! GTATAGCTTTTCCAGAATAA+CGG + chr4_1:87633948-87633967 Msa0582040:intron 30.0%
GGACAAGAAAAAGTTTCAAA+AGG - chr4_1:87634096-87634115 None:intergenic 30.0%
! TTATCCTCATGAGAGAATTT+TGG - chr4_1:87634275-87634294 None:intergenic 30.0%
! GAAGTGTGTTACTATTAACA+TGG + chr4_1:87634717-87634736 Msa0582040:three_prime_UTR 30.0%
TATTACATGGATGTGAATTG+TGG + chr4_1:87634742-87634761 Msa0582040:three_prime_UTR 30.0%
ATTACATGGATGTGAATTGT+GGG + chr4_1:87634743-87634762 Msa0582040:three_prime_UTR 30.0%
CTACTTGTAATTATGAAGCT+AGG + chr4_1:87634769-87634788 Msa0582040:three_prime_UTR 30.0%
AAAATTAAAATGCGTAGGGG+CGG + chr4_1:87629326-87629345 Msa0582040:intron 35.0%
ATATCTTGCCCCAATTTGTA+AGG + chr4_1:87629504-87629523 Msa0582040:intron 35.0%
TCTTTCCAAACCTGTAAGAA+TGG + chr4_1:87629670-87629689 Msa0582040:intron 35.0%
AATTGCCATTCTTACAGGTT+TGG - chr4_1:87629678-87629697 None:intergenic 35.0%
GAGTAAATTGCCATTCTTAC+AGG - chr4_1:87629683-87629702 None:intergenic 35.0%
AGTCAAACATCACCATGAAA+GGG + chr4_1:87629802-87629821 Msa0582040:intron 35.0%
AAGTCGCTATGCAAATAAAC+TGG - chr4_1:87630002-87630021 None:intergenic 35.0%
TTGATGGAAAACAGAAGTTG+TGG - chr4_1:87630109-87630128 None:intergenic 35.0%
! TGGTGATAGTTTGACTTAGA+TGG - chr4_1:87630168-87630187 None:intergenic 35.0%
TCTAAGTCAAACTATCACCA+TGG + chr4_1:87630168-87630187 Msa0582040:intron 35.0%
!! ATGAGAAAGATTGATGATGG+TGG + chr4_1:87630281-87630300 Msa0582040:intron 35.0%
AACCAATTAGATCTGAATCG+TGG + chr4_1:87630352-87630371 Msa0582040:intron 35.0%
ATCCACGATTCAGATCTAAT+TGG - chr4_1:87630357-87630376 None:intergenic 35.0%
TGAAACGAAACAGAAACGTA+CGG - chr4_1:87630554-87630573 None:intergenic 35.0%
! AGTTTTCCTTTACTTAGGAG+AGG + chr4_1:87630971-87630990 Msa0582040:intron 35.0%
TTCAAACCTCTCCTAAGTAA+AGG - chr4_1:87630980-87630999 None:intergenic 35.0%
!! TAAGTCTGTGTTTGGTTCTA+AGG + chr4_1:87631158-87631177 Msa0582040:intron 35.0%
AGAGGCAACATGAATTCTAA+TGG + chr4_1:87631341-87631360 Msa0582040:intron 35.0%
!! ATTGATTTTGGCATGTTTGG+AGG - chr4_1:87631371-87631390 None:intergenic 35.0%
GATAAATACTCCTACTTGCT+TGG + chr4_1:87631550-87631569 Msa0582040:intron 35.0%
TCTGAGTAGACTTAAAACAC+AGG - chr4_1:87631631-87631650 None:intergenic 35.0%
GTCTACTCAGACATCATAAT+AGG + chr4_1:87631640-87631659 Msa0582040:intron 35.0%
TACTCAGACATCATAATAGG+TGG + chr4_1:87631643-87631662 Msa0582040:intron 35.0%
ACTCAGACATCATAATAGGT+GGG + chr4_1:87631644-87631663 Msa0582040:intron 35.0%
ATAATAGGTGGGGTAATTGT+AGG + chr4_1:87631655-87631674 Msa0582040:intron 35.0%
! GCAGTTGAAGGAGAAATTTT+TGG + chr4_1:87631748-87631767 Msa0582040:intron 35.0%
!!! GAAATTTTTGGCTTTACCAC+TGG + chr4_1:87631760-87631779 Msa0582040:intron 35.0%
ACACTAATTACTACTCTCCA+TGG - chr4_1:87632071-87632090 None:intergenic 35.0%
CCTTCCAAATATCTCTTTAG+AGG - chr4_1:87632175-87632194 None:intergenic 35.0%
! CCTCTAAAGAGATATTTGGA+AGG + chr4_1:87632172-87632191 Msa0582040:intron 35.0%
AGGTAAAAAACACATTTCGG+CGG - chr4_1:87632317-87632336 None:intergenic 35.0%
GGGAGGTAAAAAACACATTT+CGG - chr4_1:87632320-87632339 None:intergenic 35.0%
TAAGGGTGAAAAAATGTAGG+GGG - chr4_1:87632340-87632359 None:intergenic 35.0%
ACAAACTCTTACAGCTTAAG+TGG + chr4_1:87632429-87632448 Msa0582040:intron 35.0%
CATTGAACTAAACCGAACTT+AGG + chr4_1:87632593-87632612 Msa0582040:intron 35.0%
!! ATGGACTAGCCAACAAAAAT+TGG - chr4_1:87632681-87632700 None:intergenic 35.0%
! CTTGCAAATCAAAGTGTTTG+GGG - chr4_1:87632898-87632917 None:intergenic 35.0%
! CCTTGCAAATCAAAGTGTTT+GGG - chr4_1:87632899-87632918 None:intergenic 35.0%
! ACCTTGCAAATCAAAGTGTT+TGG - chr4_1:87632900-87632919 None:intergenic 35.0%
CATACTAATGTTTCTTGAGC+AGG - chr4_1:87632935-87632954 None:intergenic 35.0%
CTGCTCAAGAAACATTAGTA+TGG + chr4_1:87632933-87632952 Msa0582040:intron 35.0%
TTGATTAGGAAGGGAGTTTA+CGG - chr4_1:87632976-87632995 None:intergenic 35.0%
! CAACTGTCATTGATTAGGAA+GGG - chr4_1:87632985-87633004 None:intergenic 35.0%
! TCAACTGTCATTGATTAGGA+AGG - chr4_1:87632986-87633005 None:intergenic 35.0%
! CAGTTCAACTGTCATTGATT+AGG - chr4_1:87632990-87633009 None:intergenic 35.0%
CTAATCAATGACAGTTGAAC+TGG + chr4_1:87632988-87633007 Msa0582040:intron 35.0%
TTAAGCTGCTTATCGGAATA+GGG - chr4_1:87633045-87633064 None:intergenic 35.0%
ATTAAGCTGCTTATCGGAAT+AGG - chr4_1:87633046-87633065 None:intergenic 35.0%
!! AGTTATTATGGAGAGTGTTC+TGG + chr4_1:87633159-87633178 Msa0582040:intron 35.0%
AAGGACATTACCATCATATG+AGG + chr4_1:87633267-87633286 Msa0582040:intron 35.0%
AGGACATTACCATCATATGA+GGG + chr4_1:87633268-87633287 Msa0582040:intron 35.0%
TTAGCTATTCCCTCATATGA+TGG - chr4_1:87633280-87633299 None:intergenic 35.0%
CATATGAGGGAATAGCTAAT+TGG + chr4_1:87633281-87633300 Msa0582040:intron 35.0%
GCAATGCATTCAGTAATTTC+AGG + chr4_1:87633327-87633346 Msa0582040:intron 35.0%
!! TTCAGTGTTTTGGGCTAAAT+TGG - chr4_1:87633604-87633623 None:intergenic 35.0%
AATTTAGCCCAAAACACTGA+AGG + chr4_1:87633603-87633622 Msa0582040:CDS 35.0%
! CTTTCTACCTTCAGTGTTTT+GGG - chr4_1:87633613-87633632 None:intergenic 35.0%
! ACTTTCTACCTTCAGTGTTT+TGG - chr4_1:87633614-87633633 None:intergenic 35.0%
ACTTGCAACAAGGATAAAGA+GGG - chr4_1:87633682-87633701 None:intergenic 35.0%
TGCAAGTCAAGTGATCATTA+TGG + chr4_1:87633695-87633714 Msa0582040:CDS 35.0%
TAAACAAATTGCCCATGATC+TGG - chr4_1:87633769-87633788 None:intergenic 35.0%
AAAGTTGTGCAATACATACC+AGG - chr4_1:87633802-87633821 None:intergenic 35.0%
TGAGTTTGGCAAAATCAAAG+TGG + chr4_1:87633900-87633919 Msa0582040:intron 35.0%
TAAGCCAAAATTCTCTCATG+AGG + chr4_1:87634268-87634287 Msa0582040:intron 35.0%
!! GTTTGTGATGTTGATGATTC+AGG + chr4_1:87634398-87634417 Msa0582040:intron 35.0%
TGCAATGTATCCCACTTATT+AGG + chr4_1:87634685-87634704 Msa0582040:three_prime_UTR 35.0%
TATCCCACTTATTAGGACTT+GGG + chr4_1:87634692-87634711 Msa0582040:three_prime_UTR 35.0%
! CCTTCTAGCGTTCTAGATTT+CGG - chr4_1:87629549-87629568 None:intergenic 40.0%
! AAATCTAGAACGCTAGAAGG+AGG + chr4_1:87629549-87629568 Msa0582040:intron 40.0%
! AATATGGATTGCAATTGCCC+TGG - chr4_1:87629732-87629751 None:intergenic 40.0%
TCAGATGGTTGATTGTTCTG+CGG - chr4_1:87629783-87629802 None:intergenic 40.0%
! ATGGTGATGTTTGACTCAGA+TGG - chr4_1:87629798-87629817 None:intergenic 40.0%
GAGTCAAACATCACCATGAA+AGG + chr4_1:87629801-87629820 Msa0582040:intron 40.0%
ATGAAAGGGTTGTTTGTGGT+GGG + chr4_1:87629816-87629835 Msa0582040:intron 40.0%
TTAACCATGCCAAATGTGAC+TGG + chr4_1:87629962-87629981 Msa0582040:intron 40.0%
AAAACCAGTCACATTTGGCA+TGG - chr4_1:87629969-87629988 None:intergenic 40.0%
!!! TGCCAAATGTGACTGGTTTT+TGG + chr4_1:87629969-87629988 Msa0582040:intron 40.0%
TGCCAAAAACCAGTCACATT+TGG - chr4_1:87629974-87629993 None:intergenic 40.0%
ATGGAAAACAGAAGTTGTGG+TGG - chr4_1:87630106-87630125 None:intergenic 40.0%
AGTGTACCGAATCACATTGA+TGG - chr4_1:87630125-87630144 None:intergenic 40.0%
AGTCAAACTATCACCATGGA+AGG + chr4_1:87630172-87630191 Msa0582040:intron 40.0%
GTCAAACTATCACCATGGAA+GGG + chr4_1:87630173-87630192 Msa0582040:intron 40.0%
AAAGCAATACAACCCTTCCA+TGG - chr4_1:87630188-87630207 None:intergenic 40.0%
ACGAGTGACGTGAATTATAC+AGG + chr4_1:87630252-87630271 Msa0582040:intron 40.0%
AGTGACGTGAATTATACAGG+AGG + chr4_1:87630255-87630274 Msa0582040:intron 40.0%
GCGAGAGAGAAGAAGATTAA+AGG + chr4_1:87630303-87630322 Msa0582040:intron 40.0%
AAACGAAACAGAAACGTACG+GGG - chr4_1:87630552-87630571 None:intergenic 40.0%
GAAACGAAACAGAAACGTAC+GGG - chr4_1:87630553-87630572 None:intergenic 40.0%
! GCTTGAAATTTGTTTGGACC+AGG + chr4_1:87630606-87630625 Msa0582040:intron 40.0%
AGATCTTGAGCTGATAGCTA+TGG + chr4_1:87630714-87630733 Msa0582040:intron 40.0%
TATGGCTTCTTCTCTGTTAC+TGG + chr4_1:87630732-87630751 Msa0582040:exon 40.0%
! TTCTTCTCTGTTACTGGTTG+TGG + chr4_1:87630738-87630757 Msa0582040:CDS 40.0%
! ATCACACGATTTAGGGCAAA+AGG + chr4_1:87631284-87631303 Msa0582040:intron 40.0%
!! TGGTTCACTTTTGGAAGAGT+CGG - chr4_1:87631415-87631434 None:intergenic 40.0%
! GCATCCCAGTCTATAAGTTT+TGG - chr4_1:87631496-87631515 None:intergenic 40.0%
CTCAGACATCATAATAGGTG+GGG + chr4_1:87631645-87631664 Msa0582040:intron 40.0%
ACGGTTAAATCGCAGATAGA+TGG + chr4_1:87631943-87631962 Msa0582040:intron 40.0%
AACTAAGTGCAGATGTCAAC+CGG + chr4_1:87632003-87632022 Msa0582040:intron 40.0%
AAGGTTCAGATGATTCACAC+CGG + chr4_1:87632027-87632046 Msa0582040:intron 40.0%
GTGTGCCAAAAAACAGAAAC+TGG + chr4_1:87632089-87632108 Msa0582040:intron 40.0%
!!! CCAGACCAGTTTCTGTTTTT+TGG - chr4_1:87632097-87632116 None:intergenic 40.0%
CCAAAAAACAGAAACTGGTC+TGG + chr4_1:87632094-87632113 Msa0582040:intron 40.0%
TAAAAAACACATTTCGGCGG+GGG - chr4_1:87632314-87632333 None:intergenic 40.0%
GTAAAAAACACATTTCGGCG+GGG - chr4_1:87632315-87632334 None:intergenic 40.0%
GGTAAAAAACACATTTCGGC+GGG - chr4_1:87632316-87632335 None:intergenic 40.0%
! GAAAGAACTTGTAAGGCACT+AGG + chr4_1:87632486-87632505 Msa0582040:intron 40.0%
TAGCCAACAAAAATTGGCAC+CGG - chr4_1:87632675-87632694 None:intergenic 40.0%
!! AACTTTGCCGTGGCTTTAAT+TGG + chr4_1:87632705-87632724 Msa0582040:intron 40.0%
!! ACTTTGCCGTGGCTTTAATT+GGG + chr4_1:87632706-87632725 Msa0582040:intron 40.0%
TCCAAAACCGATTAATCTGG+GGG - chr4_1:87632759-87632778 None:intergenic 40.0%
GTCCAAAACCGATTAATCTG+GGG - chr4_1:87632760-87632779 None:intergenic 40.0%
GGTCCAAAACCGATTAATCT+GGG - chr4_1:87632761-87632780 None:intergenic 40.0%
!!! CAGATTAATCGGTTTTGGAC+CGG + chr4_1:87632760-87632779 Msa0582040:intron 40.0%
!!! AGATTAATCGGTTTTGGACC+GGG + chr4_1:87632761-87632780 Msa0582040:intron 40.0%
TTCTCAAAAAACCTGGTACC+CGG - chr4_1:87632782-87632801 None:intergenic 40.0%
!! CCCAAACACTTTGATTTGCA+AGG + chr4_1:87632896-87632915 Msa0582040:intron 40.0%
AATGTTTCTTGAGCAGGTGA+CGG - chr4_1:87632929-87632948 None:intergenic 40.0%
AGGAGGGACATTGAAGATAT+AGG - chr4_1:87633014-87633033 None:intergenic 40.0%
GAATAGGGACTTAATCAGGA+GGG - chr4_1:87633030-87633049 None:intergenic 40.0%
ATCGGAATAGGGACTTAATC+AGG - chr4_1:87633034-87633053 None:intergenic 40.0%
! TGTTCTGGTCTAGAACACAA+AGG + chr4_1:87633174-87633193 Msa0582040:intron 40.0%
AGAACACAAAGGTCTGTGAT+TGG + chr4_1:87633185-87633204 Msa0582040:intron 40.0%
GAACACAAAGGTCTGTGATT+GGG + chr4_1:87633186-87633205 Msa0582040:intron 40.0%
TCTGTGATTGTTGTCTGACA+AGG + chr4_1:87633248-87633267 Msa0582040:intron 40.0%
TTACTTTGCCTATAGTTGGG+TGG + chr4_1:87633400-87633419 Msa0582040:intron 40.0%
! CAATACAGCATTTTCCTGCA+TGG + chr4_1:87633478-87633497 Msa0582040:intron 40.0%
TATGATTCTGACATTGCCAC+CGG + chr4_1:87633642-87633661 Msa0582040:CDS 40.0%
GACTTGCAACAAGGATAAAG+AGG - chr4_1:87633683-87633702 None:intergenic 40.0%
!! TGATCACTTGACTTGCAACA+AGG - chr4_1:87633692-87633711 None:intergenic 40.0%
TAACTAGATGCTTGTGCTGT+GGG + chr4_1:87633721-87633740 Msa0582040:CDS 40.0%
GAGGAACAAAACAAGCAGAA+AGG + chr4_1:87634319-87634338 Msa0582040:intron 40.0%
CATCACAAACATCACACATC+AGG - chr4_1:87634388-87634407 None:intergenic 40.0%
TTCCTCAAGGTTTGACATGA+AGG - chr4_1:87634517-87634536 None:intergenic 40.0%
TCATGTCAAACCTTGAGGAA+AGG + chr4_1:87634517-87634536 Msa0582040:CDS 40.0%
!! ACCTTGAGGAAAGGAGTATT+TGG + chr4_1:87634526-87634545 Msa0582040:CDS 40.0%
TCCAAATACTCCTTTCCTCA+AGG - chr4_1:87634530-87634549 None:intergenic 40.0%
GCAGCTTTCATTGTTCTTAC+AGG + chr4_1:87634556-87634575 Msa0582040:CDS 40.0%
GTATCCCACTTATTAGGACT+TGG + chr4_1:87634691-87634710 Msa0582040:three_prime_UTR 40.0%
! CCGAAATCTAGAACGCTAGA+AGG + chr4_1:87629546-87629565 Msa0582040:intron 45.0%
!! CAGCTAGTTCTAGCAATCCA+GGG + chr4_1:87629712-87629731 Msa0582040:intron 45.0%
CACCATGAAAGGGTTGTTTG+TGG + chr4_1:87629812-87629831 Msa0582040:intron 45.0%
CACCACAAACAACCCTTTCA+TGG - chr4_1:87629817-87629836 None:intergenic 45.0%
CATGAAAGGGTTGTTTGTGG+TGG + chr4_1:87629815-87629834 Msa0582040:intron 45.0%
TCTGTGTTTGTGCTCAGATG+AGG - chr4_1:87630061-87630080 None:intergenic 45.0%
GTGGTATGTTGTTGTGGTTG+AGG - chr4_1:87630087-87630106 None:intergenic 45.0%
GTTGTGGTGGTATGTTGTTG+TGG - chr4_1:87630093-87630112 None:intergenic 45.0%
!! GTCTGTGTTTGGTTCTAAGG+TGG + chr4_1:87631161-87631180 Msa0582040:intron 45.0%
! GGGATGCACCTTTTATGCTT+TGG + chr4_1:87631509-87631528 Msa0582040:intron 45.0%
TAAGCACACACCAAGCAAGT+AGG - chr4_1:87631563-87631582 None:intergenic 45.0%
AGCTGGATATAGGCAGTTGA+AGG + chr4_1:87631736-87631755 Msa0582040:intron 45.0%
GTGAATCATCTGAACCTTGC+CGG - chr4_1:87632025-87632044 None:intergenic 45.0%
GCTACATGTACAAGAGCAAC+CGG - chr4_1:87632049-87632068 None:intergenic 45.0%
TGCTCTTGTACATGTAGCCA+TGG + chr4_1:87632051-87632070 Msa0582040:intron 45.0%
AGCCAACAAAAATTGGCACC+GGG - chr4_1:87632674-87632693 None:intergenic 45.0%
! GATTAGCCCCCCAGATTAAT+CGG + chr4_1:87632749-87632768 Msa0582040:intron 45.0%
CCAAAACCGATTAATCTGGG+GGG - chr4_1:87632758-87632777 None:intergenic 45.0%
CGGTCCAAAACCGATTAATC+TGG - chr4_1:87632762-87632781 None:intergenic 45.0%
!!! GGGTACCAGGTTTTTTGAGA+AGG + chr4_1:87632781-87632800 Msa0582040:intron 45.0%
TGGGGATTGCAACAACAAAC+TGG - chr4_1:87632880-87632899 None:intergenic 45.0%
GGAATAGGGACTTAATCAGG+AGG - chr4_1:87633031-87633050 None:intergenic 45.0%
TTTGCCTATAGTTGGGTGGA+TGG + chr4_1:87633404-87633423 Msa0582040:intron 45.0%
TTGCCTATAGTTGGGTGGAT+GGG + chr4_1:87633405-87633424 Msa0582040:intron 45.0%
! ACAGCATTTTCCTGCATGGT+AGG + chr4_1:87633482-87633501 Msa0582040:intron 45.0%
! ATTTTCCTGCATGGTAGGCA+CGG + chr4_1:87633487-87633506 Msa0582040:intron 45.0%
GTAACTAGATGCTTGTGCTG+TGG + chr4_1:87633720-87633739 Msa0582040:CDS 45.0%
! ACCTAGTGGATCCAGATCAT+GGG + chr4_1:87633755-87633774 Msa0582040:CDS 45.0%
GATCCTATATCAAAGCGCAG+AGG - chr4_1:87634074-87634093 None:intergenic 45.0%
CACCTTCATGTCAAACCTTG+AGG + chr4_1:87634512-87634531 Msa0582040:CDS 45.0%
!! AGGAAAGGAGTATTTGGAGC+TGG + chr4_1:87634532-87634551 Msa0582040:CDS 45.0%
ACACCTGTGTCTCTAGCATA+GGG - chr4_1:87634640-87634659 None:intergenic 45.0%
CCTCCCAAGTCCTAATAAGT+GGG - chr4_1:87634698-87634717 None:intergenic 45.0%
TCCTCCCAAGTCCTAATAAG+TGG - chr4_1:87634699-87634718 None:intergenic 45.0%
!! TTAAAAAAAAAACATAATTA+CGG - chr4_1:87634179-87634198 None:intergenic 5.0%
ATTCACTGCAGTCGGTGAGA+AGG + chr4_1:87629355-87629374 Msa0582040:intron 50.0%
CCTGGATTGCTAGAACTAGC+TGG - chr4_1:87629714-87629733 None:intergenic 50.0%
!! CCAGCTAGTTCTAGCAATCC+AGG + chr4_1:87629711-87629730 Msa0582040:intron 50.0%
GATGGTTGATTGTTCTGCGG+TGG - chr4_1:87629780-87629799 None:intergenic 50.0%
CAGATGAGGTGTGTCAGTCT+CGG - chr4_1:87630047-87630066 None:intergenic 50.0%
AACGAATCATGTGCCCCTAC+GGG - chr4_1:87630449-87630468 None:intergenic 50.0%
CAACGAATCATGTGCCCCTA+CGG - chr4_1:87630450-87630469 None:intergenic 50.0%
TGAACAGCTGAGATCTCCAG+TGG - chr4_1:87631779-87631798 None:intergenic 50.0%
GGGTGAAAAAATGTAGGGGG+AGG - chr4_1:87632337-87632356 None:intergenic 50.0%
!! CTCCCGGTGCCAATTTTTGT+TGG + chr4_1:87632669-87632688 Msa0582040:intron 50.0%
!! CCCCCCAGATTAATCGGTTT+TGG + chr4_1:87632755-87632774 Msa0582040:intron 50.0%
! GCAACAACAAACTGGTGACG+AGG - chr4_1:87632872-87632891 None:intergenic 50.0%
TAAAGAGGGACCCAACACCT+AGG - chr4_1:87633668-87633687 None:intergenic 50.0%
TCTGGATCCACTAGGTCTCA+TGG - chr4_1:87633751-87633770 None:intergenic 50.0%
! GACCTAGTGGATCCAGATCA+TGG + chr4_1:87633754-87633773 Msa0582040:CDS 50.0%
ACGACGAGTAGCCGTTATTC+TGG - chr4_1:87633962-87633981 None:intergenic 50.0%
TATCAAAGCGCAGAGGTGGT+AGG - chr4_1:87634067-87634086 None:intergenic 50.0%
CCTATATCAAAGCGCAGAGG+TGG - chr4_1:87634071-87634090 None:intergenic 50.0%
CCACCTCTGCGCTTTGATAT+AGG + chr4_1:87634068-87634087 Msa0582040:intron 50.0%
TGCTGCGTCATGTCTTCTAG+CGG + chr4_1:87634435-87634454 Msa0582040:CDS 50.0%
CTGTGTCTCTAGCATAGGGA+GGG - chr4_1:87634636-87634655 None:intergenic 50.0%
CACACCTGTGTCTCTAGCAT+AGG - chr4_1:87634641-87634660 None:intergenic 50.0%
CCCACTTATTAGGACTTGGG+AGG + chr4_1:87634695-87634714 Msa0582040:three_prime_UTR 50.0%
GGACTGCGATTCACTGCAGT+CGG + chr4_1:87629347-87629366 Msa0582040:intron 55.0%
GGTGTGTCAGTCTCGGTTGT+GGG - chr4_1:87630040-87630059 None:intergenic 55.0%
AGGTGTGTCAGTCTCGGTTG+TGG - chr4_1:87630041-87630060 None:intergenic 55.0%
TCTCTGACTGCATGACTGCG+TGG + chr4_1:87630397-87630416 Msa0582040:intron 55.0%
CTGTGAATCACGACCCCGTA+GGG + chr4_1:87630432-87630451 Msa0582040:intron 55.0%
TGTGAATCACGACCCCGTAG+GGG + chr4_1:87630433-87630452 Msa0582040:intron 55.0%
ACGAATCATGTGCCCCTACG+GGG - chr4_1:87630448-87630467 None:intergenic 55.0%
CTGTTGCTGCTGAGCAGAGA+AGG + chr4_1:87630794-87630813 Msa0582040:CDS 55.0%
AGTGCAGATGTCAACCGGCA+AGG + chr4_1:87632008-87632027 Msa0582040:intron 55.0%
AAACACATTTCGGCGGGGGT+GGG - chr4_1:87632310-87632329 None:intergenic 55.0%
AAAACACATTTCGGCGGGGG+TGG - chr4_1:87632311-87632330 None:intergenic 55.0%
GTCCATGCAGAACTTTGCCG+TGG + chr4_1:87632695-87632714 Msa0582040:intron 55.0%
AGCCACGGCAAAGTTCTGCA+TGG - chr4_1:87632700-87632719 None:intergenic 55.0%
GGACCCATCCACCCAACTAT+AGG - chr4_1:87633411-87633430 None:intergenic 55.0%
GCCCATGATCTGGATCCACT+AGG - chr4_1:87633759-87633778 None:intergenic 55.0%
GCTGCGTCATGTCTTCTAGC+GGG + chr4_1:87634436-87634455 Msa0582040:CDS 55.0%
CCTGTGTCTCTAGCATAGGG+AGG - chr4_1:87634637-87634656 None:intergenic 55.0%
CCTCCCTATGCTAGAGACAC+AGG + chr4_1:87634634-87634653 Msa0582040:CDS 55.0%
GCTGTGAATCACGACCCCGT+AGG + chr4_1:87630431-87630450 Msa0582040:intron 60.0%
AACACATTTCGGCGGGGGTG+GGG - chr4_1:87632309-87632328 None:intergenic 60.0%
GGGGGGCCCAATTAAAGCCA+CGG - chr4_1:87632715-87632734 None:intergenic 60.0%
TTAATTGGGCCCCCCGCTAG+TGG + chr4_1:87632720-87632739 Msa0582040:intron 60.0%
TAATCCCCCGTCCACTAGCG+GGG - chr4_1:87632734-87632753 None:intergenic 60.0%
CTAATCCCCCGTCCACTAGC+GGG - chr4_1:87632735-87632754 None:intergenic 60.0%
GCTAATCCCCCGTCCACTAG+CGG - chr4_1:87632736-87632755 None:intergenic 60.0%
!!! TCGGTTTTGGACCGGGTACC+AGG + chr4_1:87632768-87632787 Msa0582040:intron 60.0%
CAACTCCGTGCCTACCATGC+AGG - chr4_1:87633495-87633514 None:intergenic 60.0%
TCTGACATTGCCACCGGCCT+AGG + chr4_1:87633648-87633667 Msa0582040:CDS 60.0%
ATTGCCACCGGCCTAGGTGT+TGG + chr4_1:87633654-87633673 Msa0582040:CDS 60.0%
TTGCCACCGGCCTAGGTGTT+GGG + chr4_1:87633655-87633674 Msa0582040:CDS 60.0%
GGGAGAGCCATGAGACCTAG+TGG + chr4_1:87633741-87633760 Msa0582040:CDS 60.0%
AATCCCCCGTCCACTAGCGG+GGG - chr4_1:87632733-87632752 None:intergenic 65.0%
GAGGGACCCAACACCTAGGC+CGG - chr4_1:87633664-87633683 None:intergenic 65.0%
CGGGGGTGGGGAGGAGTCTT+TGG - chr4_1:87632297-87632316 None:intergenic 70.0%
ACATTTCGGCGGGGGTGGGG+AGG - chr4_1:87632306-87632325 None:intergenic 70.0%
TTGGGCCCCCCGCTAGTGGA+CGG + chr4_1:87632724-87632743 Msa0582040:intron 70.0%
ATCCCCCGTCCACTAGCGGG+GGG - chr4_1:87632732-87632751 None:intergenic 70.0%
GGACCCAACACCTAGGCCGG+TGG - chr4_1:87633661-87633680 None:intergenic 70.0%
! TGGGCCCCCCGCTAGTGGAC+GGG + chr4_1:87632725-87632744 Msa0582040:intron 75.0%
!! GGGCCCCCCGCTAGTGGACG+GGG + chr4_1:87632726-87632745 Msa0582040:intron 80.0%
!! GGCCCCCCGCTAGTGGACGG+GGG + chr4_1:87632727-87632746 Msa0582040:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 87629153 87634902 87629153 ID=Msa0582040;Name=Msa0582040
chr4_1 mRNA 87629153 87634902 87629153 ID=Msa0582040-mRNA-1;Parent=Msa0582040;Name=Msa0582040-mRNA-1;_AED=0.22;_eAED=0.22;_QI=307|1|1|1|0.5|0.4|5|224|183
chr4_1 exon 87629153 87629342 87629153 ID=Msa0582040-mRNA-1:exon:32604;Parent=Msa0582040-mRNA-1
chr4_1 exon 87630453 87630552 87630453 ID=Msa0582040-mRNA-1:exon:32605;Parent=Msa0582040-mRNA-1
chr4_1 exon 87630716 87630822 87630716 ID=Msa0582040-mRNA-1:exon:32606;Parent=Msa0582040-mRNA-1
chr4_1 exon 87633600 87633802 87633600 ID=Msa0582040-mRNA-1:exon:32607;Parent=Msa0582040-mRNA-1
chr4_1 exon 87634420 87634902 87634420 ID=Msa0582040-mRNA-1:exon:32608;Parent=Msa0582040-mRNA-1
chr4_1 five_prime_UTR 87629153 87629342 87629153 ID=Msa0582040-mRNA-1:five_prime_utr;Parent=Msa0582040-mRNA-1
chr4_1 five_prime_UTR 87630453 87630552 87630453 ID=Msa0582040-mRNA-1:five_prime_utr;Parent=Msa0582040-mRNA-1
chr4_1 five_prime_UTR 87630716 87630732 87630716 ID=Msa0582040-mRNA-1:five_prime_utr;Parent=Msa0582040-mRNA-1
chr4_1 CDS 87630733 87630822 87630733 ID=Msa0582040-mRNA-1:cds;Parent=Msa0582040-mRNA-1
chr4_1 CDS 87633600 87633802 87633600 ID=Msa0582040-mRNA-1:cds;Parent=Msa0582040-mRNA-1
chr4_1 CDS 87634420 87634678 87634420 ID=Msa0582040-mRNA-1:cds;Parent=Msa0582040-mRNA-1
chr4_1 three_prime_UTR 87634679 87634902 87634679 ID=Msa0582040-mRNA-1:three_prime_utr;Parent=Msa0582040-mRNA-1
Gene Sequence

>Msa0582040

ATGGCTTCTTCTCTGTTACTGGTTGTGGTGTTTGTGTTTGATCTTATTGCTTTTGCTCTTGCTGTTGCTGCTGAGCAGAGAAGGAGTTCTGCCAATTTAGCCCAAAACACTGAAGGTAGAAAGTATTGTCAATATGATTCTGACATTGCCACCGGCCTAGGTGTTGGGTCCCTCTTTATCCTTGTTGCAAGTCAAGTGATCATTATGGTTGTAACTAGATGCTTGTGCTGTGGGAGAGCCATGAGACCTAGTGGATCCAGATCATGGGCAATTTGTTTATTCATCACTACCTGGTTGACATTTCTTATTGCTGCGTCATGTCTTCTAGCGGGTTCAGTGAAAAATGCTTACCACACAAAGTATAGAGATTTATTGGGAGATAGAGCACCTTCATGTCAAACCTTGAGGAAAGGAGTATTTGGAGCTGGAGCAGCTTTCATTGTTCTTACAGGAATAGTCTCTGAGCTTTACTATGTTAGTTTTTCAAAAGCTAATAATGGTGGAGTCCCTCCCTATGCTAGAGACACAGGTGTGACCATGAGTAATTTGTAA
Protein sequence

>Msa0582040

MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAQNTEGRKYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGDRAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTMSNL*