Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612760 | XP_013457088.1 | 98.361 | 183 | 3 | 0 | 8 | 190 | 1 | 183 | 9.23e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612760 | Msa0695910 | 0.883179 | 5.584414e-71 | -8.615850e-47 |
| Msa0612760 | Msa1256700 | 0.809042 | 2.300202e-50 | -8.615850e-47 |
| Msa0316390 | Msa0612760 | 0.811495 | 6.805636e-51 | -8.615850e-47 |
| Msa0558240 | Msa0612760 | 0.916123 | 2.600699e-85 | -8.615850e-47 |
| Msa0582040 | Msa0612760 | 0.857563 | 1.498958e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612760 | MtrunA17_Chr4g0047771 | 98.361 | 183 | 3 | 0 | 8 | 190 | 1 | 183 | 8.49e-132 | 367 |
| Msa0612760 | MtrunA17_Chr2g0318011 | 59.064 | 171 | 69 | 1 | 8 | 177 | 1 | 171 | 2.06e-62 | 191 |
| Msa0612760 | MtrunA17_Chr5g0423771 | 47.904 | 167 | 84 | 2 | 9 | 173 | 6 | 171 | 6.68e-53 | 167 |
| Msa0612760 | MtrunA17_Chr1g0209281 | 43.373 | 166 | 93 | 1 | 10 | 174 | 4 | 169 | 8.29e-42 | 139 |
| Msa0612760 | MtrunA17_Chr1g0209321 | 33.918 | 171 | 105 | 4 | 6 | 174 | 1 | 165 | 7.17e-19 | 80.1 |
| Msa0612760 | MtrunA17_Chr1g0209311 | 36.000 | 100 | 62 | 2 | 6 | 105 | 1 | 98 | 6.37e-13 | 62.0 |
| Msa0612760 | MtrunA17_Chr4g0039411 | 27.607 | 163 | 114 | 3 | 16 | 177 | 11 | 170 | 1.36e-12 | 63.5 |
| Msa0612760 | MtrunA17_Chr1g0209291 | 34.000 | 100 | 64 | 2 | 6 | 105 | 1 | 98 | 4.05e-11 | 57.4 |
| Msa0612760 | MtrunA17_Chr1g0209301 | 44.615 | 65 | 36 | 0 | 108 | 172 | 18 | 82 | 9.83e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612760 | AT1G61065.1 | 67.760 | 183 | 56 | 2 | 8 | 190 | 1 | 180 | 2.04e-77 | 229 |
| Msa0612760 | AT4G27435.1 | 57.803 | 173 | 72 | 1 | 8 | 179 | 1 | 173 | 4.30e-71 | 213 |
| Msa0612760 | AT1G52910.1 | 52.299 | 174 | 81 | 2 | 8 | 179 | 1 | 174 | 2.96e-63 | 193 |
| Msa0612760 | AT3G15480.1 | 50.289 | 173 | 84 | 2 | 8 | 178 | 1 | 173 | 3.14e-59 | 183 |
| Msa0612760 | AT1G13380.1 | 43.716 | 183 | 96 | 4 | 9 | 190 | 6 | 182 | 8.19e-46 | 149 |
| Msa0612760 | AT1G68220.1 | 38.953 | 172 | 103 | 2 | 13 | 182 | 7 | 178 | 1.74e-37 | 129 |
| Msa0612760 | AT5G17210.1 | 29.379 | 177 | 116 | 5 | 16 | 187 | 11 | 183 | 3.41e-14 | 68.6 |
Find 57 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGGTCTTTAATTAAATT+TGG | 0.118983 | 4_2:-61272452 | Msa0612760:three_prime_UTR |
| TATGGCTTCTTCTCTGTTAC+TGG | 0.161308 | 4_2:-61276603 | Msa0612760:CDS |
| ACTTTCTACCTTCAGTGTTT+TGG | 0.167759 | 4_2:+61273726 | None:intergenic |
| CACAAAGTATAGAGATTTAT+TGG | 0.188851 | 4_2:-61272789 | Msa0612760:CDS |
| GCAGCTTTCATTGTTCTTAC+AGG | 0.247267 | 4_2:-61272713 | Msa0612760:CDS |
| ACCTTGAGGAAAGGAGTATT+TGG | 0.252984 | 4_2:-61272743 | Msa0612760:CDS |
| TTCTTCTCTGTTACTGGTTG+TGG | 0.346559 | 4_2:-61276597 | Msa0612760:CDS |
| TATTAACATGGCTTATTACA+TGG | 0.366910 | 4_2:-61272543 | Msa0612760:three_prime_UTR |
| TTCCTCAAGGTTTGACATGA+AGG | 0.384581 | 4_2:+61272755 | None:intergenic |
| TTGCCACCGGCCTAGGTGTT+GGG | 0.395204 | 4_2:-61273682 | Msa0612760:CDS |
| TCTGACATTGCCACCGGCCT+AGG | 0.400328 | 4_2:-61273689 | Msa0612760:CDS |
| TAAACAAATTGCCCATGATC+TGG | 0.409000 | 4_2:+61273571 | None:intergenic |
| ACAAAGTATAGAGATTTATT+GGG | 0.411928 | 4_2:-61272788 | Msa0612760:CDS |
| ATTGCCACCGGCCTAGGTGT+TGG | 0.437881 | 4_2:-61273683 | Msa0612760:CDS |
| TGCAAGTCAAGTGATCATTA+TGG | 0.441738 | 4_2:-61273642 | Msa0612760:CDS |
| GACCTAGTGGATCCAGATCA+TGG | 0.481470 | 4_2:-61273583 | Msa0612760:CDS |
| CTGTTGCTGCTGAGCAGAGA+AGG | 0.494310 | 4_2:-61276541 | Msa0612760:CDS |
| AATGTATCCCACTTAGGACT+TGG | 0.496644 | 4_2:-61272581 | Msa0612760:three_prime_UTR |
| TTTGTTTAGAGTTTAGACTA+TGG | 0.496787 | 4_2:-61272469 | Msa0612760:three_prime_UTR |
| TAATGCAATGTATCCCACTT+AGG | 0.509849 | 4_2:-61272587 | Msa0612760:three_prime_UTR |
| GACTTGCAACAAGGATAAAG+AGG | 0.511852 | 4_2:+61273657 | None:intergenic |
| AGGAAAGGAGTATTTGGAGC+TGG | 0.522435 | 4_2:-61272737 | Msa0612760:CDS |
| GCTGCGTCATGTCTTCTAGC+GGG | 0.522839 | 4_2:-61272833 | Msa0612760:CDS |
| TAACTAGATGCTTGTGCTGT+GGG | 0.523620 | 4_2:-61273616 | Msa0612760:CDS |
| CTACTTGTAATTATGAAGCT+AGG | 0.525615 | 4_2:-61272503 | Msa0612760:three_prime_UTR |
| TCCAAATACTCCTTTCCTCA+AGG | 0.531125 | 4_2:+61272742 | None:intergenic |
| AGATCTTGAGCTGATAGCTA+TGG | 0.543948 | 4_2:-61276621 | Msa0612760:CDS |
| TATTACATGGATGTGAATTG+TGG | 0.545400 | 4_2:-61272530 | Msa0612760:three_prime_UTR |
| ATTACATGGATGTGAATTGT+GGG | 0.545568 | 4_2:-61272529 | Msa0612760:three_prime_UTR |
| GAGGGACCCAACACCTAGGC+CGG | 0.547158 | 4_2:+61273676 | None:intergenic |
| TTAAATTTACAAATTACTCA+TGG | 0.553734 | 4_2:+61272607 | None:intergenic |
| GTAACTAGATGCTTGTGCTG+TGG | 0.554303 | 4_2:-61273617 | Msa0612760:CDS |
| TGCTGCGTCATGTCTTCTAG+CGG | 0.556620 | 4_2:-61272834 | Msa0612760:CDS |
| TCTGGATCCACTAGGTCTCA+TGG | 0.558877 | 4_2:+61273589 | None:intergenic |
| ACTTCCTCCCAAGTCCTAAG+TGG | 0.559346 | 4_2:+61272573 | None:intergenic |
| ACCTAGTGGATCCAGATCAT+GGG | 0.563046 | 4_2:-61273582 | Msa0612760:CDS |
| CACACCTGTGTCTCTAGCAT+AGG | 0.565825 | 4_2:+61272631 | None:intergenic |
| ACACCTGTGTCTCTAGCATA+GGG | 0.569459 | 4_2:+61272632 | None:intergenic |
| ATAAATCTCTATACTTTGTG+TGG | 0.577844 | 4_2:+61272792 | None:intergenic |
| ATGTATCCCACTTAGGACTT+GGG | 0.585015 | 4_2:-61272580 | Msa0612760:three_prime_UTR |
| TTTGTTTATTCATCACTACC+TGG | 0.599794 | 4_2:-61273556 | Msa0612760:intron |
| TATGATTCTGACATTGCCAC+CGG | 0.606011 | 4_2:-61273695 | Msa0612760:CDS |
| TCATGTCAAACCTTGAGGAA+AGG | 0.610389 | 4_2:-61272752 | Msa0612760:CDS |
| CACCTTCATGTCAAACCTTG+AGG | 0.611145 | 4_2:-61272757 | Msa0612760:CDS |
| CCTCCCTATGCTAGAGACAC+AGG | 0.615801 | 4_2:-61272635 | Msa0612760:CDS |
| CTTCCTCCCAAGTCCTAAGT+GGG | 0.616951 | 4_2:+61272574 | None:intergenic |
| GGGAGAGCCATGAGACCTAG+TGG | 0.628075 | 4_2:-61273596 | Msa0612760:CDS |
| GGACCCAACACCTAGGCCGG+TGG | 0.639370 | 4_2:+61273679 | None:intergenic |
| ACTTGCAACAAGGATAAAGA+GGG | 0.642274 | 4_2:+61273658 | None:intergenic |
| CTGTGTCTCTAGCATAGGGA+GGG | 0.646357 | 4_2:+61272636 | None:intergenic |
| AATTTAGCCCAAAACACTGA+AGG | 0.648878 | 4_2:-61273734 | Msa0612760:CDS |
| TATCCCACTTAGGACTTGGG+AGG | 0.657443 | 4_2:-61272577 | Msa0612760:three_prime_UTR |
| TAAAGAGGGACCCAACACCT+AGG | 0.661021 | 4_2:+61273672 | None:intergenic |
| GAAGTGTGTTACTATTAACA+TGG | 0.662483 | 4_2:-61272555 | Msa0612760:three_prime_UTR |
| GCCCATGATCTGGATCCACT+AGG | 0.663327 | 4_2:+61273581 | None:intergenic |
| TGATCACTTGACTTGCAACA+AGG | 0.664373 | 4_2:+61273648 | None:intergenic |
| CCTGTGTCTCTAGCATAGGG+AGG | 0.667869 | 4_2:+61272635 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTTAATTTAATTTTG+TGG | - | chr4_2:61272638-61272657 | Msa0612760:CDS | 10.0% |
| !!! | AACTTTAAATAGATTTTTAA+CGG | + | chr4_2:61272811-61272830 | None:intergenic | 10.0% |
| !!! | TAGAAAATTAAAATTGATTT+TGG | + | chr4_2:61273365-61273384 | None:intergenic | 10.0% |
| !!! | GATATTTGATTTTAAATATA+AGG | + | chr4_2:61274297-61274316 | None:intergenic | 10.0% |
| !! | AAAAAAAACACAAAATTTAT+AGG | - | chr4_2:61274756-61274775 | Msa0612760:intron | 10.0% |
| !!! | AATACATTATTTTATACTAT+TGG | + | chr4_2:61274798-61274817 | None:intergenic | 10.0% |
| !! | TGTTAAAAAAAACATAATTA+CGG | + | chr4_2:61276126-61276145 | None:intergenic | 10.0% |
| !! | AATTAAAACACTAAAAAACT+TGG | - | chr4_2:61272417-61272436 | Msa0612760:three_prime_UTR | 15.0% |
| !!! | CTTGTTTTTTTGTTTTTATT+TGG | - | chr4_2:61272524-61272543 | Msa0612760:three_prime_UTR | 15.0% |
| !!! | TTTTTGTTTAGTAGTATAAA+AGG | - | chr4_2:61272854-61272873 | Msa0612760:intron | 15.0% |
| !!! | TGTTTCTATTTATTTTTTTG+AGG | + | chr4_2:61274160-61274179 | None:intergenic | 15.0% |
| !! | AAATAAATAGAAACAGTTTA+TGG | - | chr4_2:61274165-61274184 | Msa0612760:intron | 15.0% |
| !!! | AATGTTTCTAATGTTAAAAT+TGG | - | chr4_2:61275479-61275498 | Msa0612760:intron | 15.0% |
| !!! | TTATTTGTTTTTCTAATAAC+AGG | - | chr4_2:61275525-61275544 | Msa0612760:intron | 15.0% |
| !!! | ATTTTTAGCAATAATTAGTT+TGG | - | chr4_2:61275773-61275792 | Msa0612760:intron | 15.0% |
| !! | GTTAAAAAAAACATAATTAC+GGG | + | chr4_2:61276125-61276144 | None:intergenic | 15.0% |
| !! | AAAAGATATAACATAATTAC+GGG | + | chr4_2:61276155-61276174 | None:intergenic | 15.0% |
| !! | GAAAAGATATAACATAATTA+CGG | + | chr4_2:61276156-61276175 | None:intergenic | 15.0% |
| !!! | AGTAACAATAAAATATTTTG+AGG | - | chr4_2:61276316-61276335 | Msa0612760:intron | 15.0% |
| !! | TTAAATTTACAAATTACTCA+TGG | + | chr4_2:61276680-61276699 | None:intergenic | 15.0% |
| !! | ACTAAATAAAGTAAGTAAAC+TGG | + | chr4_2:61272457-61272476 | None:intergenic | 20.0% |
| !! | CAAGTTAGAATTAATAATAG+AGG | - | chr4_2:61273305-61273324 | Msa0612760:intron | 20.0% |
| !! | CATAAACACTTATCATAAAA+GGG | - | chr4_2:61275026-61275045 | Msa0612760:intron | 20.0% |
| !!! | ATTGATTTCATAAGCTATTA+TGG | - | chr4_2:61275094-61275113 | Msa0612760:intron | 20.0% |
| !! | ATTTAAAAAATTGAAAGCAG+AGG | - | chr4_2:61275172-61275191 | Msa0612760:intron | 20.0% |
| !! | AATCTGAACATTCATATTTA+AGG | - | chr4_2:61275954-61275973 | Msa0612760:intron | 20.0% |
| !! | TCATATTTAAGGACAAATAT+TGG | - | chr4_2:61275965-61275984 | Msa0612760:intron | 20.0% |
| !! | GAAAGAAGTCATATAAAAAA+GGG | + | chr4_2:61276064-61276083 | None:intergenic | 20.0% |
| !! | TGAAAGAAGTCATATAAAAA+AGG | + | chr4_2:61276065-61276084 | None:intergenic | 20.0% |
| !! | ACAAAGTATAGAGATTTATT+GGG | - | chr4_2:61276496-61276515 | Msa0612760:intron | 20.0% |
| !!! | AGTTTTTCAAAAGCTAATAA+TGG | - | chr4_2:61276619-61276638 | Msa0612760:CDS | 20.0% |
| !! | CTATGGTCTTTAATTAAATT+TGG | - | chr4_2:61276832-61276851 | Msa0612760:intron | 20.0% |
| ! | TTTATTAGAATAGAACAACC+TGG | + | chr4_2:61272576-61272595 | None:intergenic | 25.0% |
| !!! | CTTGTTGTATTTCTGAAATT+AGG | - | chr4_2:61272943-61272962 | Msa0612760:intron | 25.0% |
| ! | AGTCACTTGAACAATAAATT+AGG | - | chr4_2:61273235-61273254 | Msa0612760:intron | 25.0% |
| ! | GTCACTTGAACAATAAATTA+GGG | - | chr4_2:61273236-61273255 | Msa0612760:intron | 25.0% |
| !! | TGTAAAAATCACACGTTTTA+GGG | - | chr4_2:61273259-61273278 | Msa0612760:intron | 25.0% |
| !!! | AAAATTGATTTTGGCATGTT+TGG | + | chr4_2:61273356-61273375 | None:intergenic | 25.0% |
| !! | AACAACTCTTTTCTATTAAG+TGG | + | chr4_2:61273417-61273436 | None:intergenic | 25.0% |
| ! | TATAATCAAAAGCTGGATAT+AGG | - | chr4_2:61273737-61273756 | Msa0612760:CDS | 25.0% |
| ! | GACACAATAATGACATAATA+TGG | - | chr4_2:61273913-61273932 | Msa0612760:intron | 25.0% |
| ! | ATATTTGGAAGGGTTTATTT+AGG | - | chr4_2:61274118-61274137 | Msa0612760:intron | 25.0% |
| !!! | TTTTTTTGAGGAGCTTATTA+TGG | + | chr4_2:61274148-61274167 | None:intergenic | 25.0% |
| ! | GAGGTAAAAAAAACACATTT+CGG | + | chr4_2:61274257-61274276 | None:intergenic | 25.0% |
| ! | CATCAAAAACTTAGTCATAA+AGG | - | chr4_2:61274322-61274341 | Msa0612760:intron | 25.0% |
| !! | TTTTGTAAGAGACTGATTAA+GGG | - | chr4_2:61274391-61274410 | Msa0612760:intron | 25.0% |
| !! | GTTTAGTTCAATGAGTTTAA+TGG | + | chr4_2:61274529-61274548 | None:intergenic | 25.0% |
| ! | GCATTTGAATCATTTATACT+TGG | + | chr4_2:61274589-61274608 | None:intergenic | 25.0% |
| ! | TTAAAAAAAAACTCGGTATC+CGG | + | chr4_2:61274729-61274748 | None:intergenic | 25.0% |
| ! | AAACACAAAATTTATAGGTG+AGG | - | chr4_2:61274761-61274780 | Msa0612760:intron | 25.0% |
| ! | ATAAGTGTTTATGCTATAAG+CGG | + | chr4_2:61275019-61275038 | None:intergenic | 25.0% |
| ! | GCATAAACACTTATCATAAA+AGG | - | chr4_2:61275025-61275044 | Msa0612760:intron | 25.0% |
| ! | AGGCAAAGTAATAATTATTG+TGG | + | chr4_2:61275338-61275357 | None:intergenic | 25.0% |
| ! | ATTATTACTTTGCCTATAGT+TGG | - | chr4_2:61275343-61275362 | Msa0612760:intron | 25.0% |
| ! | TTATTACTTTGCCTATAGTT+GGG | - | chr4_2:61275344-61275363 | Msa0612760:intron | 25.0% |
| ! | AATATGAATGTTCAGATTGT+CGG | + | chr4_2:61275952-61275971 | None:intergenic | 25.0% |
| ! | AAACATAATTACGGGTATAT+TGG | + | chr4_2:61276117-61276136 | None:intergenic | 25.0% |
| ! | GTAACATGTGATAAATTCTA+TGG | - | chr4_2:61276178-61276197 | Msa0612760:intron | 25.0% |
| ! | ACAAGAGAAAACATCAAATT+TGG | + | chr4_2:61276369-61276388 | None:intergenic | 25.0% |
| ! | TGTTATCTAGTAATTCTTGA+TGG | - | chr4_2:61276386-61276405 | Msa0612760:intron | 25.0% |
| ! | GTTATCTAGTAATTCTTGAT+GGG | - | chr4_2:61276387-61276406 | Msa0612760:intron | 25.0% |
| ! | ATAAATCTCTATACTTTGTG+TGG | + | chr4_2:61276495-61276514 | None:intergenic | 25.0% |
| ! | CACAAAGTATAGAGATTTAT+TGG | - | chr4_2:61276495-61276514 | Msa0612760:intron | 25.0% |
| !! | TTTTCAAAAGCTAATAATGG+TGG | - | chr4_2:61276622-61276641 | Msa0612760:CDS | 25.0% |
| ! | TATTAACATGGCTTATTACA+TGG | - | chr4_2:61276741-61276760 | Msa0612760:intron | 25.0% |
| !! | TTTGTTTAGAGTTTAGACTA+TGG | - | chr4_2:61276815-61276834 | Msa0612760:intron | 25.0% |
| ! | GTACTTGCTTGAAATTTGTT+TGG | - | chr4_2:61272549-61272568 | Msa0612760:three_prime_UTR | 30.0% |
| !!! | CTTTCTAGTTTTCCTTTACT+TGG | - | chr4_2:61272900-61272919 | Msa0612760:intron | 30.0% |
| CAACTTTCTTAACCAAGTAA+AGG | + | chr4_2:61272915-61272934 | None:intergenic | 30.0% | |
| !! | TTGGTTAAGAAAGTTGATGA+AGG | - | chr4_2:61272919-61272938 | Msa0612760:intron | 30.0% |
| !! | TGGTTAAGAAAGTTGATGAA+GGG | - | chr4_2:61272920-61272939 | Msa0612760:intron | 30.0% |
| !! | TGTATTTCTGAAATTAGGAG+AGG | - | chr4_2:61272948-61272967 | Msa0612760:intron | 30.0% |
| ! | ACACTTGCAAAATTTTCGAT+CGG | + | chr4_2:61273127-61273146 | None:intergenic | 30.0% |
| ! | AAATTTTGCAAGTGTGTGTT+TGG | - | chr4_2:61273132-61273151 | Msa0612760:intron | 30.0% |
| TAACTGATTGTGATTAGAAG+TGG | - | chr4_2:61273183-61273202 | Msa0612760:intron | 30.0% | |
| ! | GTGTAAAAATCACACGTTTT+AGG | - | chr4_2:61273258-61273277 | Msa0612760:intron | 30.0% |
| CAGAAAGAAGATTCGTTAAT+GGG | + | chr4_2:61273449-61273468 | None:intergenic | 30.0% | |
| TATCACCAAAACTTATAGAC+TGG | - | chr4_2:61273471-61273490 | Msa0612760:intron | 30.0% | |
| ATCACCAAAACTTATAGACT+GGG | - | chr4_2:61273472-61273491 | Msa0612760:intron | 30.0% | |
| CAATCATTCCAAAGCATAAA+AGG | + | chr4_2:61273503-61273522 | None:intergenic | 30.0% | |
| !!! | CTTTTATGCTTTGGAATGAT+TGG | - | chr4_2:61273501-61273520 | Msa0612760:intron | 30.0% |
| TAATGCTGTAAACTGAATTC+TGG | - | chr4_2:61273571-61273590 | Msa0612760:CDS | 30.0% | |
| TCTGAGTAGACTTAAAAAAC+AGG | + | chr4_2:61273614-61273633 | None:intergenic | 30.0% | |
| ! | TTAGAAATGTAGAAGTGTGT+AGG | - | chr4_2:61273704-61273723 | Msa0612760:CDS | 30.0% |
| AACAGAATCTATTCTCACAT+TGG | + | chr4_2:61273862-61273881 | None:intergenic | 30.0% | |
| TTTCAGCTGTTGTAATTAAC+AGG | - | chr4_2:61273880-61273899 | Msa0612760:intron | 30.0% | |
| GTTGTAATTAACAGGCAAAT+AGG | - | chr4_2:61273888-61273907 | Msa0612760:intron | 30.0% | |
| ! | GAATCCTCTAAAGAGATATT+TGG | - | chr4_2:61274103-61274122 | Msa0612760:intron | 30.0% |
| ! | CTCTAAAGAGATATTTGGAA+GGG | - | chr4_2:61274108-61274127 | Msa0612760:intron | 30.0% |
| TTTATGGAAAGCTTAAGCTA+TGG | - | chr4_2:61274181-61274200 | Msa0612760:intron | 30.0% | |
| TAAAAAAAACACATTTCGGC+GGG | + | chr4_2:61274253-61274272 | None:intergenic | 30.0% | |
| GTAAAAAAAACACATTTCGG+CGG | + | chr4_2:61274254-61274273 | None:intergenic | 30.0% | |
| TATAAGGGTGAAAAGATGTA+GGG | + | chr4_2:61274281-61274300 | None:intergenic | 30.0% | |
| ATATAAGGGTGAAAAGATGT+AGG | + | chr4_2:61274282-61274301 | None:intergenic | 30.0% | |
| ACAAACTCTTATAGCTTAAG+TGG | - | chr4_2:61274368-61274387 | Msa0612760:intron | 30.0% | |
| ! | GTTTTGTAAGAGACTGATTA+AGG | - | chr4_2:61274390-61274409 | Msa0612760:intron | 30.0% |
| TTTGTAAGAGACTGATTAAG+GGG | - | chr4_2:61274392-61274411 | Msa0612760:intron | 30.0% | |
| TTACAAGTTCTTTCACAAGA+TGG | + | chr4_2:61274423-61274442 | None:intergenic | 30.0% | |
| ATCTTGTGAAAGAACTTGTA+AGG | - | chr4_2:61274422-61274441 | Msa0612760:intron | 30.0% | |
| ACATTAATAGCACTAGATGT+TGG | + | chr4_2:61274462-61274481 | None:intergenic | 30.0% | |
| CATTGAACTAAACCAAACTT+AGG | - | chr4_2:61274536-61274555 | Msa0612760:intron | 30.0% | |
| TCAATACTAACTCCTAAGTT+TGG | + | chr4_2:61274551-61274570 | None:intergenic | 30.0% | |
| AATGCAAACTTAATATCTCC+CGG | - | chr4_2:61274604-61274623 | Msa0612760:intron | 30.0% | |
| ! | CTTGCAAATCAAAGTATTTG+GGG | + | chr4_2:61274847-61274866 | None:intergenic | 30.0% |
| ! | CCTTGCAAATCAAAGTATTT+GGG | + | chr4_2:61274848-61274867 | None:intergenic | 30.0% |
| ! | ACCTTGCAAATCAAAGTATT+TGG | + | chr4_2:61274849-61274868 | None:intergenic | 30.0% |
| TATCGAAATAGGGACTTAAT+CGG | + | chr4_2:61274982-61275001 | None:intergenic | 30.0% | |
| TTAAGCTGCTTATCGAAATA+GGG | + | chr4_2:61274992-61275011 | None:intergenic | 30.0% | |
| ATTAAGCTGCTTATCGAAAT+AGG | + | chr4_2:61274993-61275012 | None:intergenic | 30.0% | |
| AATGACATTACCATCATATG+AGG | - | chr4_2:61275214-61275233 | Msa0612760:intron | 30.0% | |
| ATGACATTACCATCATATGA+GGG | - | chr4_2:61275215-61275234 | Msa0612760:intron | 30.0% | |
| AGTGTACACAAGTCAATAAT+AGG | + | chr4_2:61275313-61275332 | None:intergenic | 30.0% | |
| AATGAAGAGACTGAGTTATA+GGG | + | chr4_2:61275379-61275398 | None:intergenic | 30.0% | |
| AAATGAAGAGACTGAGTTAT+AGG | + | chr4_2:61275380-61275399 | None:intergenic | 30.0% | |
| TTTGTTTATTCATCACTACC+TGG | - | chr4_2:61275728-61275747 | Msa0612760:intron | 30.0% | |
| ! | ATGTTTGTTGACAATGAGTT+TGG | - | chr4_2:61275833-61275852 | Msa0612760:intron | 30.0% |
| ! | TTTAGAGCTTCATAGAATCA+CGG | + | chr4_2:61275875-61275894 | None:intergenic | 30.0% |
| ! | GTATAGCTTTTCCAGAATAA+CGG | - | chr4_2:61275895-61275914 | Msa0612760:intron | 30.0% |
| GGACAAGAAAAAGTTTCAAA+AGG | + | chr4_2:61276043-61276062 | None:intergenic | 30.0% | |
| ! | TTATCCTCATGAGAGAATTT+TGG | + | chr4_2:61276220-61276239 | None:intergenic | 30.0% |
| CAATATCAGATTTAGTCATC+AGG | - | chr4_2:61276250-61276269 | Msa0612760:intron | 30.0% | |
| ! | GAAGTGTGTTACTATTAACA+TGG | - | chr4_2:61276729-61276748 | Msa0612760:intron | 30.0% |
| TATTACATGGATGTGAATTG+TGG | - | chr4_2:61276754-61276773 | Msa0612760:intron | 30.0% | |
| ATTACATGGATGTGAATTGT+GGG | - | chr4_2:61276755-61276774 | Msa0612760:intron | 30.0% | |
| CTACTTGTAATTATGAAGCT+AGG | - | chr4_2:61276781-61276800 | Msa0612760:intron | 30.0% | |
| TGAAACGAAACAGAAACGTA+CGG | + | chr4_2:61272500-61272519 | None:intergenic | 35.0% | |
| ! | ACTTGCAAAATTTTCGATCG+GGG | + | chr4_2:61273125-61273144 | None:intergenic | 35.0% |
| ! | CACTTGCAAAATTTTCGATC+GGG | + | chr4_2:61273126-61273145 | None:intergenic | 35.0% |
| AGAGGCAACATGAATTCTAA+TGG | - | chr4_2:61273323-61273342 | Msa0612760:intron | 35.0% | |
| !! | ATTGATTTTGGCATGTTTGG+AGG | + | chr4_2:61273353-61273372 | None:intergenic | 35.0% |
| ! | TCTATTAAGTGGTTCCCTTT+TGG | + | chr4_2:61273406-61273425 | None:intergenic | 35.0% |
| CCAGAAAGAAGATTCGTTAA+TGG | + | chr4_2:61273450-61273469 | None:intergenic | 35.0% | |
| CCATTAACGAATCTTCTTTC+TGG | - | chr4_2:61273447-61273466 | Msa0612760:intron | 35.0% | |
| GATAAATACTCCTACTTGCT+TGG | - | chr4_2:61273533-61273552 | Msa0612760:intron | 35.0% | |
| GTCTACTCAGACATCATAAT+AGG | - | chr4_2:61273623-61273642 | Msa0612760:CDS | 35.0% | |
| TACTCAGACATCATAATAGG+TGG | - | chr4_2:61273626-61273645 | Msa0612760:CDS | 35.0% | |
| ACTCAGACATCATAATAGGT+GGG | - | chr4_2:61273627-61273646 | Msa0612760:CDS | 35.0% | |
| ATAATAGGTGGGGTAATTGT+AGG | - | chr4_2:61273638-61273657 | Msa0612760:CDS | 35.0% | |
| GCTGAGTTATAATCAAAAGC+TGG | - | chr4_2:61273730-61273749 | Msa0612760:CDS | 35.0% | |
| GTAATTAACAGGCAAATAGG+TGG | - | chr4_2:61273891-61273910 | Msa0612760:intron | 35.0% | |
| ATGGTTAAAGTGCAGAAAGA+TGG | - | chr4_2:61273932-61273951 | Msa0612760:intron | 35.0% | |
| TAATAAGTGCAGATGTCAAC+CGG | - | chr4_2:61273968-61273987 | Msa0612760:intron | 35.0% | |
| CCTTCCAAATATCTCTTTAG+AGG | + | chr4_2:61274110-61274129 | None:intergenic | 35.0% | |
| ! | CCTCTAAAGAGATATTTGGA+AGG | - | chr4_2:61274107-61274126 | Msa0612760:intron | 35.0% |
| AAAAAAAACACATTTCGGCG+GGG | + | chr4_2:61274252-61274271 | None:intergenic | 35.0% | |
| ATAAGGGTGAAAAGATGTAG+GGG | + | chr4_2:61274280-61274299 | None:intergenic | 35.0% | |
| !! | ATGGACTAGCCAACAAAAAT+TGG | + | chr4_2:61274632-61274651 | None:intergenic | 35.0% |
| !! | CCCAAATACTTTGATTTGCA+AGG | - | chr4_2:61274845-61274864 | Msa0612760:intron | 35.0% |
| TTGATTAGGAAGGGAGTTTA+CGG | + | chr4_2:61274923-61274942 | None:intergenic | 35.0% | |
| ! | CAACTGTCATTGATTAGGAA+GGG | + | chr4_2:61274932-61274951 | None:intergenic | 35.0% |
| ! | TCAACTGTCATTGATTAGGA+AGG | + | chr4_2:61274933-61274952 | None:intergenic | 35.0% |
| ! | CAGTTCAACTGTCATTGATT+AGG | + | chr4_2:61274937-61274956 | None:intergenic | 35.0% |
| CTAATCAATGACAGTTGAAC+TGG | - | chr4_2:61274935-61274954 | Msa0612760:intron | 35.0% | |
| AAATAGGGACTTAATCGGAA+GGG | + | chr4_2:61274977-61274996 | None:intergenic | 35.0% | |
| GCAATGCATTCAGTAATTTC+AGG | - | chr4_2:61275274-61275293 | Msa0612760:intron | 35.0% | |
| !! | TTCAGTGTTTTGGGCTAAAT+TGG | + | chr4_2:61275551-61275570 | None:intergenic | 35.0% |
| AATTTAGCCCAAAACACTGA+AGG | - | chr4_2:61275550-61275569 | Msa0612760:intron | 35.0% | |
| ! | CTTTCTACCTTCAGTGTTTT+GGG | + | chr4_2:61275560-61275579 | None:intergenic | 35.0% |
| ! | ACTTTCTACCTTCAGTGTTT+TGG | + | chr4_2:61275561-61275580 | None:intergenic | 35.0% |
| ACTTGCAACAAGGATAAAGA+GGG | + | chr4_2:61275629-61275648 | None:intergenic | 35.0% | |
| TGCAAGTCAAGTGATCATTA+TGG | - | chr4_2:61275642-61275661 | Msa0612760:intron | 35.0% | |
| TAAACAAATTGCCCATGATC+TGG | + | chr4_2:61275716-61275735 | None:intergenic | 35.0% | |
| AAAGTTGTGCAATACATACC+AGG | + | chr4_2:61275749-61275768 | None:intergenic | 35.0% | |
| TGAGTTTGGCAAAATCAAAG+TGG | - | chr4_2:61275847-61275866 | Msa0612760:intron | 35.0% | |
| TAAGCCAAAATTCTCTCATG+AGG | - | chr4_2:61276213-61276232 | Msa0612760:intron | 35.0% | |
| TATCAGATTTAGTCATCAGG+TGG | - | chr4_2:61276253-61276272 | Msa0612760:intron | 35.0% | |
| ATCAGATTTAGTCATCAGGT+GGG | - | chr4_2:61276254-61276273 | Msa0612760:intron | 35.0% | |
| AGGTGGGTCATACATATATA+TGG | - | chr4_2:61276270-61276289 | Msa0612760:intron | 35.0% | |
| TAATGCAATGTATCCCACTT+AGG | - | chr4_2:61276697-61276716 | Msa0612760:intron | 35.0% | |
| AAACGAAACAGAAACGTACG+GGG | + | chr4_2:61272498-61272517 | None:intergenic | 40.0% | |
| GAAACGAAACAGAAACGTAC+GGG | + | chr4_2:61272499-61272518 | None:intergenic | 40.0% | |
| ! | GCTTGAAATTTGTTTGGACC+AGG | - | chr4_2:61272555-61272574 | Msa0612760:three_prime_UTR | 40.0% |
| AGATCTTGAGCTGATAGCTA+TGG | - | chr4_2:61272663-61272682 | Msa0612760:CDS | 40.0% | |
| TATGGCTTCTTCTCTGTTAC+TGG | - | chr4_2:61272681-61272700 | Msa0612760:CDS | 40.0% | |
| ! | TTCTTCTCTGTTACTGGTTG+TGG | - | chr4_2:61272687-61272706 | Msa0612760:CDS | 40.0% |
| GAGGACTTGAAGCAACAATA+AGG | + | chr4_2:61273066-61273085 | None:intergenic | 40.0% | |
| !! | ACTTGCTATCGAAACAGTTG+AGG | + | chr4_2:61273085-61273104 | None:intergenic | 40.0% |
| !! | CAAGTGTGTGTTTGGTTCTA+AGG | - | chr4_2:61273140-61273159 | Msa0612760:intron | 40.0% |
| !!! | ATCACACGTTTTAGGGCAAA+AGG | - | chr4_2:61273266-61273285 | Msa0612760:intron | 40.0% |
| ! | GCATCCCAGTCTATAAGTTT+TGG | + | chr4_2:61273479-61273498 | None:intergenic | 40.0% |
| CTCAGACATCATAATAGGTG+GGG | - | chr4_2:61273628-61273647 | Msa0612760:CDS | 40.0% | |
| ! | AAATGTAGAAGTGTGTAGGC+TGG | - | chr4_2:61273708-61273727 | Msa0612760:CDS | 40.0% |
| ACTACATGTACAAGAGCAAC+CGG | + | chr4_2:61274014-61274033 | None:intergenic | 40.0% | |
| TGCTCTTGTACATGTAGTCA+TGG | - | chr4_2:61274016-61274035 | Msa0612760:intron | 40.0% | |
| !!! | CCAGACCAGTTTCTGTTTTT+TGG | + | chr4_2:61274062-61274081 | None:intergenic | 40.0% |
| CCAAAAAACAGAAACTGGTC+TGG | - | chr4_2:61274059-61274078 | Msa0612760:intron | 40.0% | |
| TAAGGGTGAAAAGATGTAGG+GGG | + | chr4_2:61274279-61274298 | None:intergenic | 40.0% | |
| ! | GAAAGAACTTGTAAGGCACT+AGG | - | chr4_2:61274429-61274448 | Msa0612760:intron | 40.0% |
| TAGCCAACAAAAATTGGCAC+CGG | + | chr4_2:61274626-61274645 | None:intergenic | 40.0% | |
| TCCAAAGACAGACTAATCTG+GGG | + | chr4_2:61274706-61274725 | None:intergenic | 40.0% | |
| GTCCAAAGACAGACTAATCT+GGG | + | chr4_2:61274707-61274726 | None:intergenic | 40.0% | |
| !! | AGATTAGTCTGTCTTTGGAC+CGG | - | chr4_2:61274707-61274726 | Msa0612760:intron | 40.0% |
| GAAATAGGGACTTAATCGGA+AGG | + | chr4_2:61274978-61274997 | None:intergenic | 40.0% | |
| !! | AGCTATTATGGAGAGTGTTC+TGG | - | chr4_2:61275106-61275125 | Msa0612760:intron | 40.0% |
| ! | TGTTCTGGTCTAGAACACAA+AGG | - | chr4_2:61275121-61275140 | Msa0612760:intron | 40.0% |
| GAACACAAAGGTCTGTGATT+TGG | - | chr4_2:61275133-61275152 | Msa0612760:intron | 40.0% | |
| CATTGTCAGACAACAATCAC+AGG | + | chr4_2:61275198-61275217 | None:intergenic | 40.0% | |
| ! | TTAGCTCTTCCCTCATATGA+TGG | + | chr4_2:61275227-61275246 | None:intergenic | 40.0% |
| CATATGAGGGAAGAGCTAAT+TGG | - | chr4_2:61275228-61275247 | Msa0612760:intron | 40.0% | |
| GGATTCTGCGTTGAATAGAT+AGG | - | chr4_2:61275249-61275268 | Msa0612760:intron | 40.0% | |
| TTACTTTGCCTATAGTTGGG+TGG | - | chr4_2:61275347-61275366 | Msa0612760:intron | 40.0% | |
| ! | CAATACAGCATTTTCCTGCA+TGG | - | chr4_2:61275425-61275444 | Msa0612760:intron | 40.0% |
| TATGATTCTGACATTGCCAC+CGG | - | chr4_2:61275589-61275608 | Msa0612760:intron | 40.0% | |
| GACTTGCAACAAGGATAAAG+AGG | + | chr4_2:61275630-61275649 | None:intergenic | 40.0% | |
| !! | TGATCACTTGACTTGCAACA+AGG | + | chr4_2:61275639-61275658 | None:intergenic | 40.0% |
| TAACTAGATGCTTGTGCTGT+GGG | - | chr4_2:61275668-61275687 | Msa0612760:intron | 40.0% | |
| GAGGAACAAAACAAGCAGAA+AGG | - | chr4_2:61276335-61276354 | Msa0612760:intron | 40.0% | |
| TGTTTGTGATGTTGATGCTC+AGG | - | chr4_2:61276413-61276432 | Msa0612760:intron | 40.0% | |
| TTCCTCAAGGTTTGACATGA+AGG | + | chr4_2:61276532-61276551 | None:intergenic | 40.0% | |
| TCATGTCAAACCTTGAGGAA+AGG | - | chr4_2:61276532-61276551 | Msa0612760:intron | 40.0% | |
| !! | ACCTTGAGGAAAGGAGTATT+TGG | - | chr4_2:61276541-61276560 | Msa0612760:CDS | 40.0% |
| TCCAAATACTCCTTTCCTCA+AGG | + | chr4_2:61276545-61276564 | None:intergenic | 40.0% | |
| GCAGCTTTCATTGTTCTTAC+AGG | - | chr4_2:61276571-61276590 | Msa0612760:CDS | 40.0% | |
| AATGTATCCCACTTAGGACT+TGG | - | chr4_2:61276703-61276722 | Msa0612760:intron | 40.0% | |
| ATGTATCCCACTTAGGACTT+GGG | - | chr4_2:61276704-61276723 | Msa0612760:intron | 40.0% | |
| !! | GTGTGTGTTTGGTTCTAAGG+TGG | - | chr4_2:61273143-61273162 | Msa0612760:intron | 45.0% |
| TCACTTCCGACTCTTCCAAA+AGG | - | chr4_2:61273388-61273407 | Msa0612760:intron | 45.0% | |
| CACTTCCGACTCTTCCAAAA+GGG | - | chr4_2:61273389-61273408 | Msa0612760:intron | 45.0% | |
| !! | TGGTTCCCTTTTGGAAGAGT+CGG | + | chr4_2:61273397-61273416 | None:intergenic | 45.0% |
| ! | GGGATGCACCTTTTATGCTT+TGG | - | chr4_2:61273492-61273511 | Msa0612760:intron | 45.0% |
| TAAGCACACACCAAGCAAGT+AGG | + | chr4_2:61273546-61273565 | None:intergenic | 45.0% | |
| AGCTGGATATAGGCAGTTGA+AGG | - | chr4_2:61273747-61273766 | Msa0612760:intron | 45.0% | |
| ATCTCAGAAGTTCATCGCTC+TGG | - | chr4_2:61273775-61273794 | Msa0612760:intron | 45.0% | |
| TCTCAGAAGTTCATCGCTCT+GGG | - | chr4_2:61273776-61273795 | Msa0612760:intron | 45.0% | |
| AAGGTTCAGATGATTCGCAC+CGG | - | chr4_2:61273992-61274011 | Msa0612760:intron | 45.0% | |
| GCGTGCCAAAAAACAGAAAC+TGG | - | chr4_2:61274054-61274073 | Msa0612760:intron | 45.0% | |
| AGCCAACAAAAATTGGCACC+GGG | + | chr4_2:61274625-61274644 | None:intergenic | 45.0% | |
| GTCCATGCAGAACTTTGTTG+TGG | - | chr4_2:61274646-61274665 | Msa0612760:intron | 45.0% | |
| AGCCACAACAAAGTTCTGCA+TGG | + | chr4_2:61274651-61274670 | None:intergenic | 45.0% | |
| GGTCCAAAGACAGACTAATC+TGG | + | chr4_2:61274708-61274727 | None:intergenic | 45.0% | |
| ! | GCAACAACAAACTGGTGATG+AGG | + | chr4_2:61274821-61274840 | None:intergenic | 45.0% |
| TGGGGATTGCAACAACAAAC+TGG | + | chr4_2:61274829-61274848 | None:intergenic | 45.0% | |
| ACCTGCAGGAAACATGAGTA+TGG | - | chr4_2:61274880-61274899 | Msa0612760:intron | 45.0% | |
| ACCATACTCATGTTTCCTGC+AGG | + | chr4_2:61274884-61274903 | None:intergenic | 45.0% | |
| GGAAGGGACGTTGAAGATAT+AGG | + | chr4_2:61274961-61274980 | None:intergenic | 45.0% | |
| TTTGCCTATAGTTGGGTGGA+TGG | - | chr4_2:61275351-61275370 | Msa0612760:intron | 45.0% | |
| TTGCCTATAGTTGGGTGGAT+GGG | - | chr4_2:61275352-61275371 | Msa0612760:intron | 45.0% | |
| ! | ACAGCATTTTCCTGCATGGT+AGG | - | chr4_2:61275429-61275448 | Msa0612760:intron | 45.0% |
| ! | ATTTTCCTGCATGGTAGGCA+CGG | - | chr4_2:61275434-61275453 | Msa0612760:intron | 45.0% |
| GTAACTAGATGCTTGTGCTG+TGG | - | chr4_2:61275667-61275686 | Msa0612760:intron | 45.0% | |
| ! | ACCTAGTGGATCCAGATCAT+GGG | - | chr4_2:61275702-61275721 | Msa0612760:intron | 45.0% |
| GATCCTATATCTAAGCGCAG+AGG | + | chr4_2:61276021-61276040 | None:intergenic | 45.0% | |
| CACCTTCATGTCAAACCTTG+AGG | - | chr4_2:61276527-61276546 | Msa0612760:intron | 45.0% | |
| !! | AGGAAAGGAGTATTTGGAGC+TGG | - | chr4_2:61276547-61276566 | Msa0612760:CDS | 45.0% |
| ACACCTGTGTCTCTAGCATA+GGG | + | chr4_2:61276655-61276674 | None:intergenic | 45.0% | |
| !!! | ATATTTGATTTTAAATATAA+GGG | + | chr4_2:61274296-61274315 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTAAAAAAAAACT+CGG | + | chr4_2:61274736-61274755 | None:intergenic | 5.0% |
| GCGAATCATCTGAACCTTGC+CGG | + | chr4_2:61273990-61274009 | None:intergenic | 50.0% | |
| AAACACATTTCGGCGGGGTT+GGG | + | chr4_2:61274247-61274266 | None:intergenic | 50.0% | |
| AAAACACATTTCGGCGGGGT+TGG | + | chr4_2:61274248-61274267 | None:intergenic | 50.0% | |
| !! | CTCCCGGTGCCAATTTTTGT+TGG | - | chr4_2:61274620-61274639 | Msa0612760:intron | 50.0% |
| CTTTAATTGTGCCCCGCTAG+TGG | - | chr4_2:61274669-61274688 | Msa0612760:intron | 50.0% | |
| !! | GCCCCAGATTAGTCTGTCTT+TGG | - | chr4_2:61274702-61274721 | Msa0612760:intron | 50.0% |
| TAAAGAGGGACCCAACACCT+AGG | + | chr4_2:61275615-61275634 | None:intergenic | 50.0% | |
| TCTGGATCCACTAGGTCTCA+TGG | + | chr4_2:61275698-61275717 | None:intergenic | 50.0% | |
| ! | GACCTAGTGGATCCAGATCA+TGG | - | chr4_2:61275701-61275720 | Msa0612760:intron | 50.0% |
| ACGACGAGTAGCCGTTATTC+TGG | + | chr4_2:61275909-61275928 | None:intergenic | 50.0% | |
| TATCTAAGCGCAGAGGTGGT+AGG | + | chr4_2:61276014-61276033 | None:intergenic | 50.0% | |
| CCTATATCTAAGCGCAGAGG+TGG | + | chr4_2:61276018-61276037 | None:intergenic | 50.0% | |
| CCACCTCTGCGCTTAGATAT+AGG | - | chr4_2:61276015-61276034 | Msa0612760:intron | 50.0% | |
| TGCTGCGTCATGTCTTCTAG+CGG | - | chr4_2:61276450-61276469 | Msa0612760:intron | 50.0% | |
| CTGTGTCTCTAGCATAGGGA+GGG | + | chr4_2:61276651-61276670 | None:intergenic | 50.0% | |
| CACACCTGTGTCTCTAGCAT+AGG | + | chr4_2:61276656-61276675 | None:intergenic | 50.0% | |
| TATCCCACTTAGGACTTGGG+AGG | - | chr4_2:61276707-61276726 | Msa0612760:intron | 50.0% | |
| CTTCCTCCCAAGTCCTAAGT+GGG | + | chr4_2:61276713-61276732 | None:intergenic | 50.0% | |
| ACTTCCTCCCAAGTCCTAAG+TGG | + | chr4_2:61276714-61276733 | None:intergenic | 50.0% | |
| CTGTTGCTGCTGAGCAGAGA+AGG | - | chr4_2:61272743-61272762 | Msa0612760:CDS | 55.0% | |
| AGTGCAGATGTCAACCGGCA+AGG | - | chr4_2:61273973-61273992 | Msa0612760:intron | 55.0% | |
| AACACATTTCGGCGGGGTTG+GGG | + | chr4_2:61274246-61274265 | None:intergenic | 55.0% | |
| GGGTGAAAAGATGTAGGGGG+AGG | + | chr4_2:61274276-61274295 | None:intergenic | 55.0% | |
| AATTGTGCCCCGCTAGTGGA+CGG | - | chr4_2:61274673-61274692 | Msa0612760:intron | 55.0% | |
| GGTTTGTAGCAGTCACCTGC+AGG | - | chr4_2:61274866-61274885 | Msa0612760:intron | 55.0% | |
| GGACCCATCCACCCAACTAT+AGG | + | chr4_2:61275358-61275377 | None:intergenic | 55.0% | |
| GCCCATGATCTGGATCCACT+AGG | + | chr4_2:61275706-61275725 | None:intergenic | 55.0% | |
| GCTGCGTCATGTCTTCTAGC+GGG | - | chr4_2:61276451-61276470 | Msa0612760:intron | 55.0% | |
| CCTGTGTCTCTAGCATAGGG+AGG | + | chr4_2:61276652-61276671 | None:intergenic | 55.0% | |
| CCTCCCTATGCTAGAGACAC+AGG | - | chr4_2:61276649-61276668 | Msa0612760:intron | 55.0% | |
| ! | ATTGTGCCCCGCTAGTGGAC+GGG | - | chr4_2:61274674-61274693 | Msa0612760:intron | 60.0% |
| CAACTCCGTGCCTACCATGC+AGG | + | chr4_2:61275442-61275461 | None:intergenic | 60.0% | |
| TCTGACATTGCCACCGGCCT+AGG | - | chr4_2:61275595-61275614 | Msa0612760:intron | 60.0% | |
| ATTGCCACCGGCCTAGGTGT+TGG | - | chr4_2:61275601-61275620 | Msa0612760:intron | 60.0% | |
| TTGCCACCGGCCTAGGTGTT+GGG | - | chr4_2:61275602-61275621 | Msa0612760:intron | 60.0% | |
| GGGAGAGCCATGAGACCTAG+TGG | - | chr4_2:61275688-61275707 | Msa0612760:intron | 60.0% | |
| ATTTCGGCGGGGTTGGGGAG+GGG | + | chr4_2:61274241-61274260 | None:intergenic | 65.0% | |
| CATTTCGGCGGGGTTGGGGA+GGG | + | chr4_2:61274242-61274261 | None:intergenic | 65.0% | |
| ACATTTCGGCGGGGTTGGGG+AGG | + | chr4_2:61274243-61274262 | None:intergenic | 65.0% | |
| ! | TTGTGCCCCGCTAGTGGACG+GGG | - | chr4_2:61274675-61274694 | Msa0612760:intron | 65.0% |
| CTAACCCCCGTCCACTAGCG+GGG | + | chr4_2:61274683-61274702 | None:intergenic | 65.0% | |
| GCTAACCCCCGTCCACTAGC+GGG | + | chr4_2:61274684-61274703 | None:intergenic | 65.0% | |
| GGCTAACCCCCGTCCACTAG+CGG | + | chr4_2:61274685-61274704 | None:intergenic | 65.0% | |
| GAGGGACCCAACACCTAGGC+CGG | + | chr4_2:61275611-61275630 | None:intergenic | 65.0% | |
| CGGGGTTGGGGAGGGGTCTT+TGG | + | chr4_2:61274234-61274253 | None:intergenic | 70.0% | |
| ! | TGTGCCCCGCTAGTGGACGG+GGG | - | chr4_2:61274676-61274695 | Msa0612760:intron | 70.0% |
| GGACCCAACACCTAGGCCGG+TGG | + | chr4_2:61275608-61275627 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61272392 | 61276914 | 61272392 | ID=Msa0612760;Name=Msa0612760 |
| chr4_2 | mRNA | 61272392 | 61276914 | 61272392 | ID=Msa0612760-mRNA-1;Parent=Msa0612760;Name=Msa0612760-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.66|0.75|1|1|1|4|221|190 |
| chr4_2 | exon | 61272392 | 61272871 | 61272392 | ID=Msa0612760-mRNA-1:exon:16648;Parent=Msa0612760-mRNA-1 |
| chr4_2 | exon | 61273557 | 61273759 | 61273557 | ID=Msa0612760-mRNA-1:exon:16647;Parent=Msa0612760-mRNA-1 |
| chr4_2 | exon | 61276535 | 61276641 | 61276535 | ID=Msa0612760-mRNA-1:exon:16646;Parent=Msa0612760-mRNA-1 |
| chr4_2 | exon | 61276911 | 61276914 | 61276911 | ID=Msa0612760-mRNA-1:exon:16645;Parent=Msa0612760-mRNA-1 |
| chr4_2 | CDS | 61276911 | 61276914 | 61276911 | ID=Msa0612760-mRNA-1:cds;Parent=Msa0612760-mRNA-1 |
| chr4_2 | CDS | 61276535 | 61276641 | 61276535 | ID=Msa0612760-mRNA-1:cds;Parent=Msa0612760-mRNA-1 |
| chr4_2 | CDS | 61273557 | 61273759 | 61273557 | ID=Msa0612760-mRNA-1:cds;Parent=Msa0612760-mRNA-1 |
| chr4_2 | CDS | 61272613 | 61272871 | 61272613 | ID=Msa0612760-mRNA-1:cds;Parent=Msa0612760-mRNA-1 |
| chr4_2 | three_prime_UTR | 61272392 | 61272612 | 61272392 | ID=Msa0612760-mRNA-1:three_prime_utr;Parent=Msa0612760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
