AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558240 MtrunA17_Chr4g0047771 98.361 183 3 0 1 183 1 183 1.22e-131 366
Msa0558240 MtrunA17_Chr2g0318011 59.064 171 69 1 1 170 1 171 2.30e-62 191
Msa0558240 MtrunA17_Chr5g0423771 47.904 167 84 2 2 166 6 171 5.02e-53 167
Msa0558240 MtrunA17_Chr1g0209281 43.373 166 93 1 3 167 4 169 6.81e-42 139
Msa0558240 MtrunA17_Chr1g0209321 34.132 167 102 4 3 167 5 165 2.30e-18 78.6
Msa0558240 MtrunA17_Chr4g0039411 27.607 163 114 3 9 170 11 170 1.22e-12 63.5
Msa0558240 MtrunA17_Chr1g0209311 36.842 95 58 2 4 98 6 98 2.17e-12 60.5
Msa0558240 MtrunA17_Chr1g0209301 44.615 65 36 0 101 165 18 82 9.99e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558240 AT1G61065.1 67.760 183 56 2 1 183 1 180 1.99e-77 229
Msa0558240 AT4G27435.1 57.803 173 72 1 1 172 1 173 4.38e-71 213
Msa0558240 AT1G52910.1 52.299 174 81 2 1 172 1 174 2.13e-63 193
Msa0558240 AT3G15480.1 50.289 173 84 2 1 171 1 173 3.40e-59 183
Msa0558240 AT1G13380.1 43.716 183 96 4 2 183 6 182 7.07e-46 149
Msa0558240 AT1G68220.1 38.953 172 103 2 6 175 7 178 1.36e-37 129
Msa0558240 AT5G17210.1 29.379 177 116 5 9 180 11 183 3.39e-14 68.2

Find 71 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGGTCTTTAATTAAATT+TGG 0.118983 4_1:-56842964 Msa0558240:three_prime_UTR
TATGGCTTCTTCTCTGTTAC+TGG 0.161308 4_1:-56847110 Msa0558240:CDS
ACTTTCTACCTTCAGTGTTT+TGG 0.167759 4_1:+56844169 None:intergenic
CACAAAGTATAGAGATTTAT+TGG 0.188851 4_1:-56843301 Msa0558240:CDS
GCAGCTTTCATTGTTCTTAC+AGG 0.247267 4_1:-56843225 Msa0558240:CDS
ACCTTGAGGAAAGGAGTATT+TGG 0.252984 4_1:-56843255 Msa0558240:CDS
AAACAAATAAAAGTGGAGTT+TGG 0.267207 4_1:+56847575 None:intergenic
TGAATCGATCCAATAATAAA+AGG 0.305268 4_1:+56847517 None:intergenic
TTCTTCTCTGTTACTGGTTG+TGG 0.346559 4_1:-56847104 Msa0558240:CDS
TATTAACTTGGCTTATTACA+TGG 0.364738 4_1:-56843055 Msa0558240:three_prime_UTR
AACAAATAAAAGTGGAGTTT+GGG 0.365836 4_1:+56847576 None:intergenic
TTCCTCAAGGTTTGACATGA+AGG 0.384581 4_1:+56843267 None:intergenic
TTGCCACCGGCCTAGGTGTT+GGG 0.395204 4_1:-56844125 Msa0558240:CDS
CGTTTGAAGCTGTGCGGGAG+CGG 0.396900 4_1:+56847618 None:intergenic
GTTTGAAGCTGTGCGGGAGC+GGG 0.399627 4_1:+56847619 None:intergenic
TCTGACATTGCCACCGGCCT+AGG 0.400328 4_1:-56844132 Msa0558240:CDS
ACTAATTAAAGTAAGTAAAC+TGG 0.406768 4_1:+56847334 None:intergenic
TAAACAAATTGCCCATGATC+TGG 0.409000 4_1:+56844014 None:intergenic
ACAAAGTATAGAGATTTATT+GGG 0.411928 4_1:-56843300 Msa0558240:CDS
ATTGCCACCGGCCTAGGTGT+TGG 0.437881 4_1:-56844126 Msa0558240:CDS
AATTAAAATTAAAATGCGTA+GGG 0.441420 4_1:-56847409 Msa0558240:five_prime_UTR
TGCAAGTCAAGTGATCATTA+TGG 0.441738 4_1:-56844085 Msa0558240:CDS
GACCTAGTGGATCCAGATCA+TGG 0.481470 4_1:-56844026 Msa0558240:CDS
ATTACACAAACAAATAAAAG+TGG 0.492052 4_1:+56847568 None:intergenic
CTGTTGCTGCTGAGCAGAGA+AGG 0.494310 4_1:-56847048 Msa0558240:CDS
AATGTATCCCACTTAGGACT+TGG 0.496644 4_1:-56843093 Msa0558240:three_prime_UTR
TTTGTTTAGAGTTTAGACTA+TGG 0.496787 4_1:-56842981 Msa0558240:three_prime_UTR
TAATTAAAATTAAAATGCGT+AGG 0.506152 4_1:-56847410 Msa0558240:five_prime_UTR
TAATGCAATGTATCCCACTT+AGG 0.509849 4_1:-56843099 Msa0558240:three_prime_UTR
GACTTGCAACAAGGATAAAG+AGG 0.511852 4_1:+56844100 None:intergenic
AGGAAAGGAGTATTTGGAGC+TGG 0.522435 4_1:-56843249 Msa0558240:CDS
GCTGCGTCATGTCTTCTAGC+GGG 0.522839 4_1:-56843345 Msa0558240:CDS
TAACTAGATGCTTGTGCTGT+GGG 0.523620 4_1:-56844059 Msa0558240:CDS
CTACTTGTAATTATGAAGCT+AGG 0.525615 4_1:-56843015 Msa0558240:three_prime_UTR
TCCAAATACTCCTTTCCTCA+AGG 0.531125 4_1:+56843254 None:intergenic
TTTGAAGCTGTGCGGGAGCG+GGG 0.533161 4_1:+56847620 None:intergenic
GAAGTGTGTTACTATTAACT+TGG 0.539644 4_1:-56843067 Msa0558240:three_prime_UTR
TAAAAGGAAAAGTATTGAAG+TGG 0.540145 4_1:+56847533 None:intergenic
AGATCTTGAGCTGATAGCTA+TGG 0.543948 4_1:-56847128 Msa0558240:exon
TATTACATGGATGTGAATTG+TGG 0.545400 4_1:-56843042 Msa0558240:three_prime_UTR
ATTACATGGATGTGAATTGT+GGG 0.545568 4_1:-56843041 Msa0558240:three_prime_UTR
GAGGGACCCAACACCTAGGC+CGG 0.547158 4_1:+56844119 None:intergenic
CACAACGTTTGAAGCTGTGC+GGG 0.549100 4_1:+56847613 None:intergenic
TTAAATTTACAAATTACTCA+TGG 0.553734 4_1:+56843119 None:intergenic
GTAACTAGATGCTTGTGCTG+TGG 0.554303 4_1:-56844060 Msa0558240:CDS
TGCTGCGTCATGTCTTCTAG+CGG 0.556620 4_1:-56843346 Msa0558240:CDS
TCTGGATCCACTAGGTCTCA+TGG 0.558877 4_1:+56844032 None:intergenic
ACTTCCTCCCAAGTCCTAAG+TGG 0.559346 4_1:+56843085 None:intergenic
ACCTAGTGGATCCAGATCAT+GGG 0.563046 4_1:-56844025 Msa0558240:CDS
CACACCTGTGTCTCTAGCAT+AGG 0.565825 4_1:+56843143 None:intergenic
ACACCTGTGTCTCTAGCATA+GGG 0.569459 4_1:+56843144 None:intergenic
ATAAATCTCTATACTTTGTG+TGG 0.577844 4_1:+56843304 None:intergenic
ATGTATCCCACTTAGGACTT+GGG 0.585015 4_1:-56843092 Msa0558240:three_prime_UTR
TTTGTTTATTCATCACTACC+TGG 0.599794 4_1:-56843999 Msa0558240:intron
TATGATTCTGACATTGCCAC+CGG 0.606011 4_1:-56844138 Msa0558240:CDS
TCATGTCAAACCTTGAGGAA+AGG 0.610389 4_1:-56843264 Msa0558240:CDS
CACCTTCATGTCAAACCTTG+AGG 0.611145 4_1:-56843269 Msa0558240:CDS
CCTCCCTATGCTAGAGACAC+AGG 0.615801 4_1:-56843147 Msa0558240:CDS
CTTCCTCCCAAGTCCTAAGT+GGG 0.616951 4_1:+56843086 None:intergenic
GGGAGAGCCATGAGACCTAG+TGG 0.628075 4_1:-56844039 Msa0558240:CDS
GGACCCAACACCTAGGCCGG+TGG 0.639370 4_1:+56844122 None:intergenic
ACTTGCAACAAGGATAAAGA+GGG 0.642274 4_1:+56844101 None:intergenic
ATTAAAATTAAAATGCGTAG+GGG 0.642918 4_1:-56847408 Msa0558240:five_prime_UTR
CTGTGTCTCTAGCATAGGGA+GGG 0.646357 4_1:+56843148 None:intergenic
AATTTAGCCCAAAACACTGA+AGG 0.648878 4_1:-56844177 Msa0558240:CDS
TATCCCACTTAGGACTTGGG+AGG 0.657443 4_1:-56843089 Msa0558240:three_prime_UTR
TAAAGAGGGACCCAACACCT+AGG 0.661021 4_1:+56844115 None:intergenic
GCCCATGATCTGGATCCACT+AGG 0.663327 4_1:+56844024 None:intergenic
TGATCACTTGACTTGCAACA+AGG 0.664373 4_1:+56844091 None:intergenic
CCTGTGTCTCTAGCATAGGG+AGG 0.667869 4_1:+56843147 None:intergenic
ACACAACGTTTGAAGCTGTG+CGG 0.709469 4_1:+56847612 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTTAATTTTG+TGG - chr4_1:56843407-56843426 Msa0558240:intron 10.0%
!!! AACTTTAAATAGATTTTTAA+CGG + chr4_1:56843592-56843611 None:intergenic 10.0%
!!! ACATTTGATTTTAAATATAA+GGG + chr4_1:56845144-56845163 None:intergenic 10.0%
!! AAAAAAAACATAAAATTTCT+AGG - chr4_1:56845594-56845613 Msa0558240:intron 10.0%
!!! AATACAATATTTTATACTAT+TGG + chr4_1:56845636-56845655 None:intergenic 10.0%
!! TAAAAAAAAAACATAATTAC+GGG + chr4_1:56846958-56846977 None:intergenic 10.0%
!!! TTAAACAATAAAATATTTTG+AGG - chr4_1:56847080-56847099 Msa0558240:CDS 10.0%
!!! AATACTTTTCCTTTTATTAT+TGG - chr4_1:56843034-56843053 Msa0558240:three_prime_UTR 15.0%
!! TAATTAAAATTAAAATGCGT+AGG - chr4_1:56843150-56843169 Msa0558240:CDS 15.0%
!! AATTAAAATTAAAATGCGTA+GGG - chr4_1:56843151-56843170 Msa0558240:CDS 15.0%
!! AATTAAAACACTAAAAAACT+TGG - chr4_1:56843189-56843208 Msa0558240:CDS 15.0%
!!! TTTTTGTTTAGTAGTATAAA+AGG - chr4_1:56843635-56843654 Msa0558240:intron 15.0%
!!! TAGAGAATTAAAATTGATTT+TGG + chr4_1:56844141-56844160 None:intergenic 15.0%
!!! AATCAAATATCTAATTTTCT+CGG + chr4_1:56844594-56844613 None:intergenic 15.0%
!!! GACATTTGATTTTAAATATA+AGG + chr4_1:56845145-56845164 None:intergenic 15.0%
!!! AATGTTTCTAATGTTAAAAT+TGG - chr4_1:56846312-56846331 Msa0558240:intron 15.0%
!!! TTATTTGTTTTTCTAATAAC+AGG - chr4_1:56846358-56846377 Msa0558240:intron 15.0%
!!! ATTTTTAGCAATAATTAGTT+TGG - chr4_1:56846606-56846625 Msa0558240:intron 15.0%
!! AAAAGATATAACATAATTAC+GGG + chr4_1:56846990-56847009 None:intergenic 15.0%
!! GAAAAGATATAACATAATTA+CGG + chr4_1:56846991-56847010 None:intergenic 15.0%
!! TTAAATTTACAAATTACTCA+TGG + chr4_1:56847444-56847463 None:intergenic 15.0%
!! ATTACACAAACAAATAAAAG+TGG + chr4_1:56842995-56843014 None:intergenic 20.0%
!! ATTAAAATTAAAATGCGTAG+GGG - chr4_1:56843152-56843171 Msa0558240:CDS 20.0%
!! ACTAATTAAAGTAAGTAAAC+TGG + chr4_1:56843229-56843248 None:intergenic 20.0%
!!! TGTCTTGTTTTGTTTTTATT+TGG - chr4_1:56843293-56843312 Msa0558240:CDS 20.0%
!! AAATGATTCATAACTTAAAG+TGG + chr4_1:56843873-56843892 None:intergenic 20.0%
!! CAAGTTAGAATTAATAATAG+AGG - chr4_1:56844081-56844100 Msa0558240:CDS 20.0%
!! TTCAAAAAAAATCTCTTTAG+AGG + chr4_1:56844932-56844951 None:intergenic 20.0%
!!! TCTAAAGAGATTTTTTTTGA+AGG - chr4_1:56844931-56844950 Msa0558240:intron 20.0%
!!! TGTTTCCATTTATTTTATTG+AGG + chr4_1:56845012-56845031 None:intergenic 20.0%
!! TATACACACTTATCATAAAA+GGG - chr4_1:56845867-56845886 Msa0558240:intron 20.0%
!!! ATTGATTTCATAAGCTATTA+TGG - chr4_1:56845935-56845954 Msa0558240:intron 20.0%
!! ATTTAAAAAATTGAAAGCAG+AGG - chr4_1:56846013-56846032 Msa0558240:intron 20.0%
!! AATCTGAACATTCATATTTA+AGG - chr4_1:56846787-56846806 Msa0558240:intron 20.0%
!! TCATATTTAAGGACAAATAT+TGG - chr4_1:56846798-56846817 Msa0558240:intron 20.0%
!! GAAAGAAGTCATATAAAAAA+GGG + chr4_1:56846897-56846916 None:intergenic 20.0%
!! TGAAAGAAGTCATATAAAAA+AGG + chr4_1:56846898-56846917 None:intergenic 20.0%
!! ACAAAGTATAGAGATTTATT+GGG - chr4_1:56847260-56847279 Msa0558240:intron 20.0%
!!! AGTTTTTCAAAAGCTAATAA+TGG - chr4_1:56847383-56847402 Msa0558240:five_prime_UTR 20.0%
!! CTATGGTCTTTAATTAAATT+TGG - chr4_1:56847596-56847615 Msa0558240:five_prime_UTR 20.0%
! AACAAATAAAAGTGGAGTTT+GGG + chr4_1:56842987-56843006 None:intergenic 25.0%
! AAACAAATAAAAGTGGAGTT+TGG + chr4_1:56842988-56843007 None:intergenic 25.0%
!!! TAAAAGGAAAAGTATTGAAG+TGG + chr4_1:56843030-56843049 None:intergenic 25.0%
! TGAATCGATCCAATAATAAA+AGG + chr4_1:56843046-56843065 None:intergenic 25.0%
! TTTATTAGAATAGAACAACC+TGG + chr4_1:56843345-56843364 None:intergenic 25.0%
!!! CTTGTTGTATTTCTGAAATT+AGG - chr4_1:56843724-56843743 Msa0558240:intron 25.0%
!! ACTTACAAAATTTTCGATTG+GGG + chr4_1:56843901-56843920 None:intergenic 25.0%
!! CACTTACAAAATTTTCGATT+GGG + chr4_1:56843902-56843921 None:intergenic 25.0%
!! ACACTTACAAAATTTTCGAT+TGG + chr4_1:56843903-56843922 None:intergenic 25.0%
!! AAATTTTGTAAGTGTGTGTT+TGG - chr4_1:56843908-56843927 Msa0558240:intron 25.0%
! TAACTGATTGTAATTACAAG+TGG - chr4_1:56843959-56843978 Msa0558240:intron 25.0%
! AGTCACTTGAACAATAAATT+AGG - chr4_1:56844011-56844030 Msa0558240:CDS 25.0%
! GTCACTTGAACAATAAATTA+GGG - chr4_1:56844012-56844031 Msa0558240:CDS 25.0%
!! TGTAAAAATCACACGTTTTA+GGG - chr4_1:56844035-56844054 Msa0558240:CDS 25.0%
!!! AAAATTGATTTTGGCATGTT+TGG + chr4_1:56844132-56844151 None:intergenic 25.0%
!! AACAACTCTTTTCAATTAAG+TGG + chr4_1:56844193-56844212 None:intergenic 25.0%
! TATAATCAAAAGCTGGATAT+AGG - chr4_1:56844513-56844532 Msa0558240:intron 25.0%
! AACAGAATCTATTCTCATAT+TGG + chr4_1:56844660-56844679 None:intergenic 25.0%
! GTTGTAATTAACAAGCAAAT+AGG - chr4_1:56844686-56844705 Msa0558240:intron 25.0%
!! AGATAAATGGTTGATATTCA+TGG - chr4_1:56844743-56844762 Msa0558240:intron 25.0%
!! TTTTATTGAGGAGCTAATTA+AGG + chr4_1:56845000-56845019 None:intergenic 25.0%
! TAGCTCCTCAATAAAATAAA+TGG - chr4_1:56845004-56845023 Msa0558240:intron 25.0%
! AAATAAATGGAAACAGCTTA+TGG - chr4_1:56845017-56845036 Msa0558240:intron 25.0%
! TTATTCAATGAGCTTATCAT+AGG + chr4_1:56845052-56845071 None:intergenic 25.0%
! TATAAGGGTGAAAAAATGTA+GGG + chr4_1:56845129-56845148 None:intergenic 25.0%
! ATATAAGGGTGAAAAAATGT+AGG + chr4_1:56845130-56845149 None:intergenic 25.0%
! CATCAAAAACTTAGTCATAA+AGG - chr4_1:56845170-56845189 Msa0558240:intron 25.0%
! GAGTTTGTAAATTCAATAAC+AGG + chr4_1:56845204-56845223 None:intergenic 25.0%
! TTACAAGTTCTTTCACAAAA+TGG + chr4_1:56845267-56845286 None:intergenic 25.0%
!! ATTTTGTGAAAGAACTTGTA+AGG - chr4_1:56845266-56845285 Msa0558240:intron 25.0%
!! GTTTAGTTCAATGAGTTTAA+TGG + chr4_1:56845373-56845392 None:intergenic 25.0%
! GTGTTTGAATCATTTATACT+TGG + chr4_1:56845426-56845445 None:intergenic 25.0%
!! AAACATAAAATTTCTAGGTG+AGG - chr4_1:56845599-56845618 Msa0558240:intron 25.0%
!! AGTTAATTAAGCTGCTTTAT+CGG + chr4_1:56845839-56845858 None:intergenic 25.0%
! GTATACACACTTATCATAAA+AGG - chr4_1:56845866-56845885 Msa0558240:intron 25.0%
! AGGCAAAGTAATAATTATTG+TGG + chr4_1:56846171-56846190 None:intergenic 25.0%
! ATTATTACTTTGCCTATAGT+TGG - chr4_1:56846176-56846195 Msa0558240:intron 25.0%
! TTATTACTTTGCCTATAGTT+GGG - chr4_1:56846177-56846196 Msa0558240:intron 25.0%
! AATATGAATGTTCAGATTGT+CGG + chr4_1:56846785-56846804 None:intergenic 25.0%
! AAACATAATTACGGGTATAT+TGG + chr4_1:56846950-56846969 None:intergenic 25.0%
! GTAACATGTGATAAATTCTA+TGG - chr4_1:56847013-56847032 Msa0558240:intron 25.0%
! ACAAGAGAAAACATCAAATT+TGG + chr4_1:56847133-56847152 None:intergenic 25.0%
! TGTTATCTAGTAATTCTTGA+TGG - chr4_1:56847150-56847169 Msa0558240:intron 25.0%
! GTTATCTAGTAATTCTTGAT+GGG - chr4_1:56847151-56847170 Msa0558240:intron 25.0%
! ATAAATCTCTATACTTTGTG+TGG + chr4_1:56847259-56847278 None:intergenic 25.0%
! CACAAAGTATAGAGATTTAT+TGG - chr4_1:56847259-56847278 Msa0558240:intron 25.0%
!! TTTTCAAAAGCTAATAATGG+TGG - chr4_1:56847386-56847405 Msa0558240:five_prime_UTR 25.0%
!! TATTAACTTGGCTTATTACA+TGG - chr4_1:56847505-56847524 Msa0558240:five_prime_UTR 25.0%
!! TTTGTTTAGAGTTTAGACTA+TGG - chr4_1:56847579-56847598 Msa0558240:five_prime_UTR 25.0%
!! GATTCACGTACTTTTAGAAA+TGG - chr4_1:56843060-56843079 Msa0558240:three_prime_UTR 30.0%
! GTACTTGCTTGAAATTTGTT+TGG - chr4_1:56843318-56843337 Msa0558240:CDS 30.0%
!!! CTTTCTAGTTTTCCTTTACT+TGG - chr4_1:56843681-56843700 Msa0558240:intron 30.0%
CAACTTTCTTAACCAAGTAA+AGG + chr4_1:56843696-56843715 None:intergenic 30.0%
!! TTGGTTAAGAAAGTTGATGA+AGG - chr4_1:56843700-56843719 Msa0558240:intron 30.0%
!! TGGTTAAGAAAGTTGATGAA+GGG - chr4_1:56843701-56843720 Msa0558240:intron 30.0%
!! TGTATTTCTGAAATTAGGAG+AGG - chr4_1:56843729-56843748 Msa0558240:intron 30.0%
AAGAACTATCAAAACAGTTG+AGG + chr4_1:56843840-56843859 None:intergenic 30.0%
! GTGTAAAAATCACACGTTTT+AGG - chr4_1:56844034-56844053 Msa0558240:CDS 30.0%
! TCAATTAAGTGGATCACTTT+TGG + chr4_1:56844182-56844201 None:intergenic 30.0%
CAGAAAGAAGATTCGTTAAT+GGG + chr4_1:56844225-56844244 None:intergenic 30.0%
TATCACCAAAACTTATAGAC+TGG - chr4_1:56844247-56844266 Msa0558240:intron 30.0%
ATCACCAAAACTTATAGACT+GGG - chr4_1:56844248-56844267 Msa0558240:intron 30.0%
CAATCATTCCAAAGCATAAA+AGG + chr4_1:56844279-56844298 None:intergenic 30.0%
!!! CTTTTATGCTTTGGAATGAT+TGG - chr4_1:56844277-56844296 Msa0558240:intron 30.0%
TAATGCTGTAAACTGAATTC+TGG - chr4_1:56844347-56844366 Msa0558240:intron 30.0%
TCTGAGTAGACTTAAAAAAC+AGG + chr4_1:56844390-56844409 None:intergenic 30.0%
! TTAGAAATGTAGAAGTGTGT+AGG - chr4_1:56844480-56844499 Msa0558240:intron 30.0%
! AAGTACAAAATTTTGTCGTG+TGG - chr4_1:56844624-56844643 Msa0558240:intron 30.0%
GTAATTAACAAGCAAATAGG+TGG - chr4_1:56844689-56844708 Msa0558240:intron 30.0%
GACACAATAATGACGTAATA+CGG - chr4_1:56844711-56844730 Msa0558240:intron 30.0%
! CTCTAAAGAGATATTTGCAA+GGG - chr4_1:56844960-56844979 Msa0558240:intron 30.0%
! ATATTTGCAAGGGTTTGTTT+AGG - chr4_1:56844970-56844989 Msa0558240:intron 30.0%
ATAAGGGTGAAAAAATGTAG+GGG + chr4_1:56845128-56845147 None:intergenic 30.0%
!!! TGGTTTTGTAAGAGATTAAG+AGG - chr4_1:56845236-56845255 Msa0558240:intron 30.0%
ACATTAATAGCACTAGATGT+TGG + chr4_1:56845306-56845325 None:intergenic 30.0%
CATAATCTCAATCCTAAGTT+CGG + chr4_1:56845395-56845414 None:intergenic 30.0%
AAACACAACTTTATATCTCC+CGG - chr4_1:56845440-56845459 Msa0558240:intron 30.0%
! TTTTTCCTTCTCAAAAAACC+TGG + chr4_1:56845576-56845595 None:intergenic 30.0%
AATGAAGAGACTGAGTTATA+GGG + chr4_1:56846212-56846231 None:intergenic 30.0%
AAATGAAGAGACTGAGTTAT+AGG + chr4_1:56846213-56846232 None:intergenic 30.0%
TTTGTTTATTCATCACTACC+TGG - chr4_1:56846561-56846580 Msa0558240:intron 30.0%
! ATGTTTGTTGACAATGAGTT+TGG - chr4_1:56846666-56846685 Msa0558240:intron 30.0%
! TTTAGAGCTTCATAGAATCA+CGG + chr4_1:56846708-56846727 None:intergenic 30.0%
! GTATAGCTTTTCCAGAATAA+CGG - chr4_1:56846728-56846747 Msa0558240:intron 30.0%
GGACAAGAAAAAGTTTCAAA+AGG + chr4_1:56846876-56846895 None:intergenic 30.0%
! TTATCCTCATGAGAGAATTT+TGG + chr4_1:56847055-56847074 None:intergenic 30.0%
! GAAGTGTGTTACTATTAACT+TGG - chr4_1:56847493-56847512 Msa0558240:five_prime_UTR 30.0%
TATTACATGGATGTGAATTG+TGG - chr4_1:56847518-56847537 Msa0558240:five_prime_UTR 30.0%
ATTACATGGATGTGAATTGT+GGG - chr4_1:56847519-56847538 Msa0558240:five_prime_UTR 30.0%
CTACTTGTAATTATGAAGCT+AGG - chr4_1:56847545-56847564 Msa0558240:five_prime_UTR 30.0%
TGAAACGAAACAGAAACGTA+CGG + chr4_1:56843272-56843291 None:intergenic 35.0%
!! TAAGTGTGTGTTTGGTTCTA+AGG - chr4_1:56843916-56843935 Msa0558240:intron 35.0%
AGAGGCAACATGAATTCTAA+TGG - chr4_1:56844099-56844118 Msa0558240:CDS 35.0%
!! ATTGATTTTGGCATGTTTGG+AGG + chr4_1:56844129-56844148 None:intergenic 35.0%
CCAGAAAGAAGATTCGTTAA+TGG + chr4_1:56844226-56844245 None:intergenic 35.0%
CCATTAACGAATCTTCTTTC+TGG - chr4_1:56844223-56844242 Msa0558240:intron 35.0%
GATAAATACTCCTACTTGCT+TGG - chr4_1:56844309-56844328 Msa0558240:intron 35.0%
GTCTACTCAGACATCATAAT+AGG - chr4_1:56844399-56844418 Msa0558240:intron 35.0%
TACTCAGACATCATAATAGG+TGG - chr4_1:56844402-56844421 Msa0558240:intron 35.0%
ACTCAGACATCATAATAGGT+GGG - chr4_1:56844403-56844422 Msa0558240:intron 35.0%
ATAATAGGTGGGGTAATTGT+AGG - chr4_1:56844414-56844433 Msa0558240:intron 35.0%
GCTGAGTTATAATCAAAAGC+TGG - chr4_1:56844506-56844525 Msa0558240:intron 35.0%
! GCAGTTGAAGGAGAAATTTT+TGG - chr4_1:56844535-56844554 Msa0558240:intron 35.0%
!!! GAAATTTTTGGCTTTACCAC+TGG - chr4_1:56844547-56844566 Msa0558240:intron 35.0%
ACGGTTAAATCGCAGATAAA+TGG - chr4_1:56844730-56844749 Msa0558240:intron 35.0%
ACACTAATTACTACTCTCCA+TGG + chr4_1:56844858-56844877 None:intergenic 35.0%
CCTTGCAAATATCTCTTTAG+AGG + chr4_1:56844962-56844981 None:intergenic 35.0%
! CCTCTAAAGAGATATTTGCA+AGG - chr4_1:56844959-56844978 Msa0558240:intron 35.0%
AGGTAAAAAACACATTTCGG+CGG + chr4_1:56845104-56845123 None:intergenic 35.0%
GGGAGGTAAAAAACACATTT+CGG + chr4_1:56845107-56845126 None:intergenic 35.0%
TAAGGGTGAAAAAATGTAGG+GGG + chr4_1:56845127-56845146 None:intergenic 35.0%
ACAAACTCTTACAGCTTAAG+TGG - chr4_1:56845216-56845235 Msa0558240:intron 35.0%
CATTGAACTAAACCGAACTT+AGG - chr4_1:56845380-56845399 Msa0558240:intron 35.0%
!! ATGGACTAGCCAACAAAAAT+TGG + chr4_1:56845468-56845487 None:intergenic 35.0%
! CTTGCAAATCAAAGTGTTTG+GGG + chr4_1:56845685-56845704 None:intergenic 35.0%
! CCTTGCAAATCAAAGTGTTT+GGG + chr4_1:56845686-56845705 None:intergenic 35.0%
! ACCTTGCAAATCAAAGTGTT+TGG + chr4_1:56845687-56845706 None:intergenic 35.0%
CATACTAATGTTTCTTGAGC+AGG + chr4_1:56845722-56845741 None:intergenic 35.0%
CTGCTCAAGAAACATTAGTA+TGG - chr4_1:56845720-56845739 Msa0558240:intron 35.0%
TTGATTAGGAAGGGAGTTTA+CGG + chr4_1:56845763-56845782 None:intergenic 35.0%
! CAACTGTCATTGATTAGGAA+GGG + chr4_1:56845772-56845791 None:intergenic 35.0%
! TCAACTGTCATTGATTAGGA+AGG + chr4_1:56845773-56845792 None:intergenic 35.0%
! CAGTTCAACTGTCATTGATT+AGG + chr4_1:56845777-56845796 None:intergenic 35.0%
CTAATCAATGACAGTTGAAC+TGG - chr4_1:56845775-56845794 Msa0558240:intron 35.0%
! TAAGCTGCTTTATCGGAATA+GGG + chr4_1:56845832-56845851 None:intergenic 35.0%
! TTAAGCTGCTTTATCGGAAT+AGG + chr4_1:56845833-56845852 None:intergenic 35.0%
AAGGACATTACCATCATATG+AGG - chr4_1:56846055-56846074 Msa0558240:intron 35.0%
AGGACATTACCATCATATGA+GGG - chr4_1:56846056-56846075 Msa0558240:intron 35.0%
TTAGCTATTCCCTCATATGA+TGG + chr4_1:56846068-56846087 None:intergenic 35.0%
CATATGAGGGAATAGCTAAT+TGG - chr4_1:56846069-56846088 Msa0558240:intron 35.0%
GCAATGCATTCAGTAATTTC+AGG - chr4_1:56846115-56846134 Msa0558240:intron 35.0%
!! TTCAGTGTTTTGGGCTAAAT+TGG + chr4_1:56846384-56846403 None:intergenic 35.0%
AATTTAGCCCAAAACACTGA+AGG - chr4_1:56846383-56846402 Msa0558240:intron 35.0%
! CTTTCTACCTTCAGTGTTTT+GGG + chr4_1:56846393-56846412 None:intergenic 35.0%
! ACTTTCTACCTTCAGTGTTT+TGG + chr4_1:56846394-56846413 None:intergenic 35.0%
ACTTGCAACAAGGATAAAGA+GGG + chr4_1:56846462-56846481 None:intergenic 35.0%
TGCAAGTCAAGTGATCATTA+TGG - chr4_1:56846475-56846494 Msa0558240:intron 35.0%
TAAACAAATTGCCCATGATC+TGG + chr4_1:56846549-56846568 None:intergenic 35.0%
AAAGTTGTGCAATACATACC+AGG + chr4_1:56846582-56846601 None:intergenic 35.0%
TGAGTTTGGCAAAATCAAAG+TGG - chr4_1:56846680-56846699 Msa0558240:intron 35.0%
TAAGCCAAAATTCTCTCATG+AGG - chr4_1:56847048-56847067 Msa0558240:CDS 35.0%
TAATGCAATGTATCCCACTT+AGG - chr4_1:56847461-56847480 Msa0558240:five_prime_UTR 35.0%
AAACGAAACAGAAACGTACG+GGG + chr4_1:56843270-56843289 None:intergenic 40.0%
GAAACGAAACAGAAACGTAC+GGG + chr4_1:56843271-56843290 None:intergenic 40.0%
! GCTTGAAATTTGTTTGGACC+AGG - chr4_1:56843324-56843343 Msa0558240:CDS 40.0%
AGATCTTGAGCTGATAGCTA+TGG - chr4_1:56843432-56843451 Msa0558240:intron 40.0%
TATGGCTTCTTCTCTGTTAC+TGG - chr4_1:56843450-56843469 Msa0558240:intron 40.0%
! TTCTTCTCTGTTACTGGTTG+TGG - chr4_1:56843456-56843475 Msa0558240:intron 40.0%
GAGGACTTGAAGCAACAATA+AGG + chr4_1:56843821-56843840 None:intergenic 40.0%
!!! ATCACACGTTTTAGGGCAAA+AGG - chr4_1:56844042-56844061 Msa0558240:CDS 40.0%
!! TGGATCACTTTTGGAAGAGT+CGG + chr4_1:56844173-56844192 None:intergenic 40.0%
! GCATCCCAGTCTATAAGTTT+TGG + chr4_1:56844255-56844274 None:intergenic 40.0%
CTCAGACATCATAATAGGTG+GGG - chr4_1:56844404-56844423 Msa0558240:intron 40.0%
! AAATGTAGAAGTGTGTAGGC+TGG - chr4_1:56844484-56844503 Msa0558240:intron 40.0%
AACTAAGTGCAGATGTCAAC+CGG - chr4_1:56844790-56844809 Msa0558240:intron 40.0%
AAGGTTCAGATGATTCACAC+CGG - chr4_1:56844814-56844833 Msa0558240:intron 40.0%
GTGTGCCAAAAAACAGAAAC+TGG - chr4_1:56844876-56844895 Msa0558240:intron 40.0%
!!! CCAGACCAGTTTCTGTTTTT+TGG + chr4_1:56844884-56844903 None:intergenic 40.0%
CCAAAAAACAGAAACTGGTC+TGG - chr4_1:56844881-56844900 Msa0558240:intron 40.0%
TAAAAAACACATTTCGGCGG+GGG + chr4_1:56845101-56845120 None:intergenic 40.0%
GTAAAAAACACATTTCGGCG+GGG + chr4_1:56845102-56845121 None:intergenic 40.0%
GGTAAAAAACACATTTCGGC+GGG + chr4_1:56845103-56845122 None:intergenic 40.0%
! GAAAGAACTTGTAAGGCACT+AGG - chr4_1:56845273-56845292 Msa0558240:intron 40.0%
TAGCCAACAAAAATTGGCAC+CGG + chr4_1:56845462-56845481 None:intergenic 40.0%
!! AACTTTGCCGTGGCTTTAAT+TGG - chr4_1:56845492-56845511 Msa0558240:intron 40.0%
!! ACTTTGCCGTGGCTTTAATT+GGG - chr4_1:56845493-56845512 Msa0558240:intron 40.0%
TCCAAAACCGATTAATCTGG+GGG + chr4_1:56845546-56845565 None:intergenic 40.0%
GTCCAAAACCGATTAATCTG+GGG + chr4_1:56845547-56845566 None:intergenic 40.0%
GGTCCAAAACCGATTAATCT+GGG + chr4_1:56845548-56845567 None:intergenic 40.0%
!!! CAGATTAATCGGTTTTGGAC+CGG - chr4_1:56845547-56845566 Msa0558240:intron 40.0%
!!! AGATTAATCGGTTTTGGACC+GGG - chr4_1:56845548-56845567 Msa0558240:intron 40.0%
TTCTCAAAAAACCTGGTACC+CGG + chr4_1:56845569-56845588 None:intergenic 40.0%
!! CCCAAACACTTTGATTTGCA+AGG - chr4_1:56845683-56845702 Msa0558240:intron 40.0%
AATGTTTCTTGAGCAGGTGA+CGG + chr4_1:56845716-56845735 None:intergenic 40.0%
AGGAGGGACATTGAAGATAT+AGG + chr4_1:56845801-56845820 None:intergenic 40.0%
GAATAGGGACTTAATCAGGA+GGG + chr4_1:56845817-56845836 None:intergenic 40.0%
ATCGGAATAGGGACTTAATC+AGG + chr4_1:56845821-56845840 None:intergenic 40.0%
!! AGCTATTATGGAGAGTGTTC+TGG - chr4_1:56845947-56845966 Msa0558240:intron 40.0%
! TGTTCTGGTCTAGAACACAA+AGG - chr4_1:56845962-56845981 Msa0558240:intron 40.0%
AGAACACAAAGGTCTGTGAT+TGG - chr4_1:56845973-56845992 Msa0558240:intron 40.0%
GAACACAAAGGTCTGTGATT+GGG - chr4_1:56845974-56845993 Msa0558240:intron 40.0%
TCTGTGATTGTTGTCTGACA+AGG - chr4_1:56846036-56846055 Msa0558240:intron 40.0%
TTACTTTGCCTATAGTTGGG+TGG - chr4_1:56846180-56846199 Msa0558240:intron 40.0%
! CAATACAGCATTTTCCTGCA+TGG - chr4_1:56846258-56846277 Msa0558240:intron 40.0%
TATGATTCTGACATTGCCAC+CGG - chr4_1:56846422-56846441 Msa0558240:intron 40.0%
GACTTGCAACAAGGATAAAG+AGG + chr4_1:56846463-56846482 None:intergenic 40.0%
!! TGATCACTTGACTTGCAACA+AGG + chr4_1:56846472-56846491 None:intergenic 40.0%
TAACTAGATGCTTGTGCTGT+GGG - chr4_1:56846501-56846520 Msa0558240:intron 40.0%
GAGGAACAAAACAAGCAGAA+AGG - chr4_1:56847099-56847118 Msa0558240:CDS 40.0%
TGTTTGTGATGTTGATGCTC+AGG - chr4_1:56847177-56847196 Msa0558240:intron 40.0%
TTCCTCAAGGTTTGACATGA+AGG + chr4_1:56847296-56847315 None:intergenic 40.0%
TCATGTCAAACCTTGAGGAA+AGG - chr4_1:56847296-56847315 Msa0558240:intron 40.0%
!! ACCTTGAGGAAAGGAGTATT+TGG - chr4_1:56847305-56847324 Msa0558240:intron 40.0%
TCCAAATACTCCTTTCCTCA+AGG + chr4_1:56847309-56847328 None:intergenic 40.0%
GCAGCTTTCATTGTTCTTAC+AGG - chr4_1:56847335-56847354 Msa0558240:five_prime_UTR 40.0%
AATGTATCCCACTTAGGACT+TGG - chr4_1:56847467-56847486 Msa0558240:five_prime_UTR 40.0%
ATGTATCCCACTTAGGACTT+GGG - chr4_1:56847468-56847487 Msa0558240:five_prime_UTR 40.0%
! ACACAACGTTTGAAGCTGTG+CGG + chr4_1:56842951-56842970 None:intergenic 45.0%
!! GTGTGTGTTTGGTTCTAAGG+TGG - chr4_1:56843919-56843938 Msa0558240:intron 45.0%
! GGGATGCACCTTTTATGCTT+TGG - chr4_1:56844268-56844287 Msa0558240:intron 45.0%
TAAGCACACACCAAGCAAGT+AGG + chr4_1:56844322-56844341 None:intergenic 45.0%
AGCTGGATATAGGCAGTTGA+AGG - chr4_1:56844523-56844542 Msa0558240:intron 45.0%
GTGAATCATCTGAACCTTGC+CGG + chr4_1:56844812-56844831 None:intergenic 45.0%
GCTACATGTACAAGAGCAAC+CGG + chr4_1:56844836-56844855 None:intergenic 45.0%
TGCTCTTGTACATGTAGCCA+TGG - chr4_1:56844838-56844857 Msa0558240:intron 45.0%
AGCCAACAAAAATTGGCACC+GGG + chr4_1:56845461-56845480 None:intergenic 45.0%
! GATTAGCCCCCCAGATTAAT+CGG - chr4_1:56845536-56845555 Msa0558240:intron 45.0%
CCAAAACCGATTAATCTGGG+GGG + chr4_1:56845545-56845564 None:intergenic 45.0%
CGGTCCAAAACCGATTAATC+TGG + chr4_1:56845549-56845568 None:intergenic 45.0%
!!! GGGTACCAGGTTTTTTGAGA+AGG - chr4_1:56845568-56845587 Msa0558240:intron 45.0%
TGGGGATTGCAACAACAAAC+TGG + chr4_1:56845667-56845686 None:intergenic 45.0%
GGAATAGGGACTTAATCAGG+AGG + chr4_1:56845818-56845837 None:intergenic 45.0%
TTTGCCTATAGTTGGGTGGA+TGG - chr4_1:56846184-56846203 Msa0558240:intron 45.0%
TTGCCTATAGTTGGGTGGAT+GGG - chr4_1:56846185-56846204 Msa0558240:intron 45.0%
! ACAGCATTTTCCTGCATGGT+AGG - chr4_1:56846262-56846281 Msa0558240:intron 45.0%
! ATTTTCCTGCATGGTAGGCA+CGG - chr4_1:56846267-56846286 Msa0558240:intron 45.0%
GTAACTAGATGCTTGTGCTG+TGG - chr4_1:56846500-56846519 Msa0558240:intron 45.0%
! ACCTAGTGGATCCAGATCAT+GGG - chr4_1:56846535-56846554 Msa0558240:intron 45.0%
GATCCTATATCAAAGCGCAG+AGG + chr4_1:56846854-56846873 None:intergenic 45.0%
CACCTTCATGTCAAACCTTG+AGG - chr4_1:56847291-56847310 Msa0558240:intron 45.0%
!! AGGAAAGGAGTATTTGGAGC+TGG - chr4_1:56847311-56847330 Msa0558240:intron 45.0%
ACACCTGTGTCTCTAGCATA+GGG + chr4_1:56847419-56847438 None:intergenic 45.0%
!! TTAAAAAAAAAACATAATTA+CGG + chr4_1:56846959-56846978 None:intergenic 5.0%
! CACAACGTTTGAAGCTGTGC+GGG + chr4_1:56842950-56842969 None:intergenic 50.0%
TGAACAGCTGAGATCTCCAG+TGG + chr4_1:56844566-56844585 None:intergenic 50.0%
GGGTGAAAAAATGTAGGGGG+AGG + chr4_1:56845124-56845143 None:intergenic 50.0%
!! CTCCCGGTGCCAATTTTTGT+TGG - chr4_1:56845456-56845475 Msa0558240:intron 50.0%
!! CCCCCCAGATTAATCGGTTT+TGG - chr4_1:56845542-56845561 Msa0558240:intron 50.0%
! GCAACAACAAACTGGTGACG+AGG + chr4_1:56845659-56845678 None:intergenic 50.0%
TAAAGAGGGACCCAACACCT+AGG + chr4_1:56846448-56846467 None:intergenic 50.0%
TCTGGATCCACTAGGTCTCA+TGG + chr4_1:56846531-56846550 None:intergenic 50.0%
! GACCTAGTGGATCCAGATCA+TGG - chr4_1:56846534-56846553 Msa0558240:intron 50.0%
ACGACGAGTAGCCGTTATTC+TGG + chr4_1:56846742-56846761 None:intergenic 50.0%
TATCAAAGCGCAGAGGTGGT+AGG + chr4_1:56846847-56846866 None:intergenic 50.0%
CCTATATCAAAGCGCAGAGG+TGG + chr4_1:56846851-56846870 None:intergenic 50.0%
CCACCTCTGCGCTTTGATAT+AGG - chr4_1:56846848-56846867 Msa0558240:intron 50.0%
TGCTGCGTCATGTCTTCTAG+CGG - chr4_1:56847214-56847233 Msa0558240:intron 50.0%
CTGTGTCTCTAGCATAGGGA+GGG + chr4_1:56847415-56847434 None:intergenic 50.0%
CACACCTGTGTCTCTAGCAT+AGG + chr4_1:56847420-56847439 None:intergenic 50.0%
TATCCCACTTAGGACTTGGG+AGG - chr4_1:56847471-56847490 Msa0558240:five_prime_UTR 50.0%
CTTCCTCCCAAGTCCTAAGT+GGG + chr4_1:56847477-56847496 None:intergenic 50.0%
ACTTCCTCCCAAGTCCTAAG+TGG + chr4_1:56847478-56847497 None:intergenic 50.0%
CTGTTGCTGCTGAGCAGAGA+AGG - chr4_1:56843512-56843531 Msa0558240:intron 55.0%
AGTGCAGATGTCAACCGGCA+AGG - chr4_1:56844795-56844814 Msa0558240:intron 55.0%
AAACACATTTCGGCGGGGGT+GGG + chr4_1:56845097-56845116 None:intergenic 55.0%
AAAACACATTTCGGCGGGGG+TGG + chr4_1:56845098-56845117 None:intergenic 55.0%
GTCCATGCAGAACTTTGCCG+TGG - chr4_1:56845482-56845501 Msa0558240:intron 55.0%
AGCCACGGCAAAGTTCTGCA+TGG + chr4_1:56845487-56845506 None:intergenic 55.0%
GGACCCATCCACCCAACTAT+AGG + chr4_1:56846191-56846210 None:intergenic 55.0%
GCCCATGATCTGGATCCACT+AGG + chr4_1:56846539-56846558 None:intergenic 55.0%
GCTGCGTCATGTCTTCTAGC+GGG - chr4_1:56847215-56847234 Msa0558240:intron 55.0%
CCTGTGTCTCTAGCATAGGG+AGG + chr4_1:56847416-56847435 None:intergenic 55.0%
CCTCCCTATGCTAGAGACAC+AGG - chr4_1:56847413-56847432 Msa0558240:five_prime_UTR 55.0%
! TTTGAAGCTGTGCGGGAGCG+GGG + chr4_1:56842943-56842962 None:intergenic 60.0%
! GTTTGAAGCTGTGCGGGAGC+GGG + chr4_1:56842944-56842963 None:intergenic 60.0%
! CGTTTGAAGCTGTGCGGGAG+CGG + chr4_1:56842945-56842964 None:intergenic 60.0%
AACACATTTCGGCGGGGGTG+GGG + chr4_1:56845096-56845115 None:intergenic 60.0%
GGGGGGCCCAATTAAAGCCA+CGG + chr4_1:56845502-56845521 None:intergenic 60.0%
TTAATTGGGCCCCCCGCTAG+TGG - chr4_1:56845507-56845526 Msa0558240:intron 60.0%
TAATCCCCCGTCCACTAGCG+GGG + chr4_1:56845521-56845540 None:intergenic 60.0%
CTAATCCCCCGTCCACTAGC+GGG + chr4_1:56845522-56845541 None:intergenic 60.0%
GCTAATCCCCCGTCCACTAG+CGG + chr4_1:56845523-56845542 None:intergenic 60.0%
!!! TCGGTTTTGGACCGGGTACC+AGG - chr4_1:56845555-56845574 Msa0558240:intron 60.0%
CAACTCCGTGCCTACCATGC+AGG + chr4_1:56846275-56846294 None:intergenic 60.0%
TCTGACATTGCCACCGGCCT+AGG - chr4_1:56846428-56846447 Msa0558240:intron 60.0%
ATTGCCACCGGCCTAGGTGT+TGG - chr4_1:56846434-56846453 Msa0558240:intron 60.0%
TTGCCACCGGCCTAGGTGTT+GGG - chr4_1:56846435-56846454 Msa0558240:intron 60.0%
GGGAGAGCCATGAGACCTAG+TGG - chr4_1:56846521-56846540 Msa0558240:intron 60.0%
AATCCCCCGTCCACTAGCGG+GGG + chr4_1:56845520-56845539 None:intergenic 65.0%
GAGGGACCCAACACCTAGGC+CGG + chr4_1:56846444-56846463 None:intergenic 65.0%
CGGGGGTGGGGAGGAGTCTT+TGG + chr4_1:56845084-56845103 None:intergenic 70.0%
ACATTTCGGCGGGGGTGGGG+AGG + chr4_1:56845093-56845112 None:intergenic 70.0%
TTGGGCCCCCCGCTAGTGGA+CGG - chr4_1:56845511-56845530 Msa0558240:intron 70.0%
ATCCCCCGTCCACTAGCGGG+GGG + chr4_1:56845519-56845538 None:intergenic 70.0%
GGACCCAACACCTAGGCCGG+TGG + chr4_1:56846441-56846460 None:intergenic 70.0%
! TGGGCCCCCCGCTAGTGGAC+GGG - chr4_1:56845512-56845531 Msa0558240:intron 75.0%
!! GGGCCCCCCGCTAGTGGACG+GGG - chr4_1:56845513-56845532 Msa0558240:intron 80.0%
!! GGCCCCCCGCTAGTGGACGG+GGG - chr4_1:56845514-56845533 Msa0558240:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 56842904 56847678 56842904 ID=Msa0558240;Name=Msa0558240
chr4_1 mRNA 56842904 56847678 56842904 ID=Msa0558240-mRNA-1;Parent=Msa0558240;Name=Msa0558240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=384|1|1|1|0.66|0.75|4|221|183
chr4_1 exon 56842904 56843383 56842904 ID=Msa0558240-mRNA-1:exon:17198;Parent=Msa0558240-mRNA-1
chr4_1 exon 56844000 56844202 56844000 ID=Msa0558240-mRNA-1:exon:17197;Parent=Msa0558240-mRNA-1
chr4_1 exon 56847042 56847148 56847042 ID=Msa0558240-mRNA-1:exon:17196;Parent=Msa0558240-mRNA-1
chr4_1 exon 56847312 56847678 56847312 ID=Msa0558240-mRNA-1:exon:17195;Parent=Msa0558240-mRNA-1
chr4_1 five_prime_UTR 56847312 56847678 56847312 ID=Msa0558240-mRNA-1:five_prime_utr;Parent=Msa0558240-mRNA-1
chr4_1 five_prime_UTR 56847132 56847148 56847132 ID=Msa0558240-mRNA-1:five_prime_utr;Parent=Msa0558240-mRNA-1
chr4_1 CDS 56847042 56847131 56847042 ID=Msa0558240-mRNA-1:cds;Parent=Msa0558240-mRNA-1
chr4_1 CDS 56844000 56844202 56844000 ID=Msa0558240-mRNA-1:cds;Parent=Msa0558240-mRNA-1
chr4_1 CDS 56843125 56843383 56843125 ID=Msa0558240-mRNA-1:cds;Parent=Msa0558240-mRNA-1
chr4_1 three_prime_UTR 56842904 56843124 56842904 ID=Msa0558240-mRNA-1:three_prime_utr;Parent=Msa0558240-mRNA-1
Gene Sequence

>Msa0558240

ATGGCTTCTTCTCTGTTACTGGTTGTGGTGTTTGTGTTTGATCTTATTGCTTTTGCTCTTGCTGTTGCTGCTGAGCAGAGAAGGAGTTCTGCCAATTTAGCCCAAAACACTGAAGGTAGAAAGTATTGTCAATATGATTCTGACATTGCCACCGGCCTAGGTGTTGGGTCCCTCTTTATCCTTGTTGCAAGTCAAGTGATCATTATGGTTGTAACTAGATGCTTGTGCTGTGGGAGAGCCATGAGACCTAGTGGATCCAGATCATGGGCAATTTGTTTATTCATCACTACCTGGTTGACATTTCTTATTGCTGCGTCATGTCTTCTAGCGGGTTCAGTGAAAAATGCTTACCACACAAAGTATAGAGATTTATTGGGAGATAGAGCACCTTCATGTCAAACCTTGAGGAAAGGAGTATTTGGAGCTGGAGCAGCTTTCATTGTTCTTACAGGAATAGTCTCTGAGCTTTACTATGTTAGTTTTTCAAAAGCTAATAATGGTGGAGTCCCTCCCTATGCTAGAGACACAGGTGTGACCATGAGTAATTTGTAA
Protein sequence

>Msa0558240

MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAQNTEGRKYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGDRAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTMSNL*