Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584580 | KEH29628.1 | 96.364 | 110 | 4 | 0 | 1 | 110 | 1 | 110 | 3.70e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584580 | A0A072UKK4 | 96.364 | 110 | 4 | 0 | 1 | 110 | 1 | 110 | 1.77e-68 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0584580 | 0.802682 | 4.996007e-49 | -8.615850e-47 |
| Msa0004480 | Msa0584580 | 0.848825 | 4.788720e-60 | -8.615850e-47 |
| Msa0005260 | Msa0584580 | 0.804292 | 2.317272e-49 | -8.615850e-47 |
| Msa0011050 | Msa0584580 | 0.864433 | 1.220597e-64 | -8.615850e-47 |
| Msa0043850 | Msa0584580 | 0.806908 | 6.544309e-50 | -8.615850e-47 |
| Msa0048390 | Msa0584580 | 0.835717 | 1.425992e-56 | -8.615850e-47 |
| Msa0059900 | Msa0584580 | 0.805694 | 1.179496e-49 | -8.615850e-47 |
| Msa0060070 | Msa0584580 | 0.833759 | 4.433494e-56 | -8.615850e-47 |
| Msa0077370 | Msa0584580 | 0.804513 | 2.084058e-49 | -8.615850e-47 |
| Msa0090380 | Msa0584580 | 0.851969 | 6.274838e-61 | -8.615850e-47 |
| Msa0094710 | Msa0584580 | 0.819473 | 1.140365e-52 | -8.615850e-47 |
| Msa0104760 | Msa0584580 | 0.811293 | 7.528930e-51 | -8.615850e-47 |
| Msa0104810 | Msa0584580 | 0.841966 | 3.447923e-58 | -8.615850e-47 |
| Msa0136630 | Msa0584580 | 0.804483 | 2.113758e-49 | -8.615850e-47 |
| Msa0137860 | Msa0584580 | 0.851735 | 7.312568e-61 | -8.615850e-47 |
| Msa0137980 | Msa0584580 | 0.809262 | 2.063738e-50 | -8.615850e-47 |
| Msa0138900 | Msa0584580 | 0.832873 | 7.372589e-56 | -8.615850e-47 |
| Msa0147790 | Msa0584580 | 0.822142 | 2.774817e-53 | -8.615850e-47 |
| Msa0151220 | Msa0584580 | 0.865890 | 4.252105e-65 | -8.615850e-47 |
| Msa0170770 | Msa0584580 | 0.814063 | 1.864744e-51 | -8.615850e-47 |
| Msa0176260 | Msa0584580 | 0.850481 | 1.651638e-60 | -8.615850e-47 |
| Msa0187310 | Msa0584580 | 0.803293 | 3.734757e-49 | -8.615850e-47 |
| Msa0196880 | Msa0584580 | 0.832823 | 7.588552e-56 | -8.615850e-47 |
| Msa0213430 | Msa0584580 | 0.808729 | 2.684314e-50 | -8.615850e-47 |
| Msa0223130 | Msa0584580 | 0.816490 | 5.384244e-52 | -8.615850e-47 |
| Msa0223140 | Msa0584580 | 0.869867 | 2.244358e-66 | -8.615850e-47 |
| Msa0224130 | Msa0584580 | 0.816225 | 6.172406e-52 | -8.615850e-47 |
| Msa0225850 | Msa0584580 | 0.829841 | 4.106477e-55 | -8.615850e-47 |
| Msa0364790 | Msa0584580 | 0.838734 | 2.411564e-57 | -8.615850e-47 |
| Msa0365950 | Msa0584580 | 0.831052 | 2.076959e-55 | -8.615850e-47 |
| Msa0380600 | Msa0584580 | 0.816295 | 5.951739e-52 | -8.615850e-47 |
| Msa0402800 | Msa0584580 | 0.810930 | 9.024342e-51 | -8.615850e-47 |
| Msa0412260 | Msa0584580 | 0.825248 | 5.199303e-54 | -8.615850e-47 |
| Msa0413870 | Msa0584580 | 0.819128 | 1.366479e-52 | -8.615850e-47 |
| Msa0430240 | Msa0584580 | 0.814475 | 1.511589e-51 | -8.615850e-47 |
| Msa0443450 | Msa0584580 | 0.813096 | 3.042489e-51 | -8.615850e-47 |
| Msa0456770 | Msa0584580 | 0.854171 | 1.470272e-61 | -8.615850e-47 |
| Msa0259440 | Msa0584580 | 0.800156 | 1.644777e-48 | -8.615850e-47 |
| Msa0260520 | Msa0584580 | 0.832822 | 7.591285e-56 | -8.615850e-47 |
| Msa0260530 | Msa0584580 | 0.814623 | 1.401893e-51 | -8.615850e-47 |
| Msa0264500 | Msa0584580 | 0.839139 | 1.894655e-57 | -8.615850e-47 |
| Msa0264520 | Msa0584580 | 0.818608 | 1.794033e-52 | -8.615850e-47 |
| Msa0264680 | Msa0584580 | 0.868570 | 5.919892e-66 | -8.615850e-47 |
| Msa0265270 | Msa0584580 | 0.815264 | 1.010449e-51 | -8.615850e-47 |
| Msa0272400 | Msa0584580 | 0.802795 | 4.734897e-49 | -8.615850e-47 |
| Msa0276430 | Msa0584580 | 0.837770 | 4.271349e-57 | -8.615850e-47 |
| Msa0279430 | Msa0584580 | 0.805890 | 1.072973e-49 | -8.615850e-47 |
| Msa0302510 | Msa0584580 | 0.828394 | 9.211225e-55 | -8.615850e-47 |
| Msa0302730 | Msa0584580 | 0.879361 | 1.326588e-69 | -8.615850e-47 |
| Msa0302840 | Msa0584580 | 0.804038 | 2.616785e-49 | -8.615850e-47 |
| Msa0306310 | Msa0584580 | 0.823493 | 1.344539e-53 | -8.615850e-47 |
| Msa0312590 | Msa0584580 | 0.804449 | 2.148587e-49 | -8.615850e-47 |
| Msa0316470 | Msa0584580 | 0.837547 | 4.874474e-57 | -8.615850e-47 |
| Msa0319020 | Msa0584580 | 0.815484 | 9.029872e-52 | -8.615850e-47 |
| Msa0330030 | Msa0584580 | 0.804155 | 2.473995e-49 | -8.615850e-47 |
| Msa0339720 | Msa0584580 | 0.865538 | 5.492180e-65 | -8.615850e-47 |
| Msa0339730 | Msa0584580 | 0.803948 | 2.731855e-49 | -8.615850e-47 |
| Msa0484800 | Msa0584580 | 0.817088 | 3.953530e-52 | -8.615850e-47 |
| Msa0488580 | Msa0584580 | 0.824486 | 7.866256e-54 | -8.615850e-47 |
| Msa0497860 | Msa0584580 | 0.811367 | 7.254935e-51 | -8.615850e-47 |
| Msa0529000 | Msa0584580 | 0.806603 | 7.591357e-50 | -8.615850e-47 |
| Msa0534870 | Msa0584580 | 0.812717 | 3.683802e-51 | -8.615850e-47 |
| Msa0545050 | Msa0584580 | 0.827200 | 1.784305e-54 | -8.615850e-47 |
| Msa0549140 | Msa0584580 | 0.829775 | 4.261271e-55 | -8.615850e-47 |
| Msa0558390 | Msa0584580 | 0.800579 | 1.348661e-48 | -8.615850e-47 |
| Msa0579670 | Msa0584580 | 0.800106 | 1.684036e-48 | -8.615850e-47 |
| Msa0584580 | Msa0584600 | 0.982830 | 4.101024e-156 | -8.615850e-47 |
| Msa0584580 | Msa0585240 | 0.806267 | 8.937134e-50 | -8.615850e-47 |
| Msa0584580 | Msa0588670 | 0.862414 | 5.155089e-64 | -8.615850e-47 |
| Msa0584580 | Msa0588710 | 0.835633 | 1.498139e-56 | -8.615850e-47 |
| Msa0584580 | Msa0600590 | 0.834908 | 2.282735e-56 | -8.615850e-47 |
| Msa0584580 | Msa0611060 | 0.830025 | 3.705233e-55 | -8.615850e-47 |
| Msa0584580 | Msa0615210 | 0.822668 | 2.094570e-53 | -8.615850e-47 |
| Msa0584580 | Msa0628810 | 0.817781 | 2.759101e-52 | -8.615850e-47 |
| Msa0584580 | Msa0631320 | 0.815736 | 7.935683e-52 | -8.615850e-47 |
| Msa0584580 | Msa0635270 | 0.808380 | 3.186113e-50 | -8.615850e-47 |
| Msa0584580 | Msa0641130 | 0.826269 | 2.976014e-54 | -8.615850e-47 |
| Msa0584580 | Msa0645560 | 0.802174 | 6.359529e-49 | -8.615850e-47 |
| Msa0584580 | Msa0666530 | 0.808695 | 2.728931e-50 | -8.615850e-47 |
| Msa0584580 | Msa0679670 | 0.817847 | 2.666809e-52 | -8.615850e-47 |
| Msa0584580 | Msa0685240 | 0.802030 | 6.805277e-49 | -8.615850e-47 |
| Msa0584580 | Msa0696100 | 0.809541 | 1.798597e-50 | -8.615850e-47 |
| Msa0584580 | Msa0698450 | 0.808483 | 3.029941e-50 | -8.615850e-47 |
| Msa0584580 | Msa0698460 | 0.814209 | 1.731044e-51 | -8.615850e-47 |
| Msa0584580 | Msa0713060 | 0.858363 | 8.673062e-63 | -8.615850e-47 |
| Msa0584580 | Msa0729350 | 0.827320 | 1.669595e-54 | -8.615850e-47 |
| Msa0584580 | Msa0737430 | 0.823674 | 1.220047e-53 | -8.615850e-47 |
| Msa0584580 | Msa0743510 | 0.805099 | 1.572055e-49 | -8.615850e-47 |
| Msa0584580 | Msa0743870 | 0.804419 | 2.179825e-49 | -8.615850e-47 |
| Msa0584580 | Msa0744640 | 0.832748 | 7.919171e-56 | -8.615850e-47 |
| Msa0584580 | Msa0769720 | 0.818980 | 1.476728e-52 | -8.615850e-47 |
| Msa0584580 | Msa0772280 | 0.804323 | 2.282429e-49 | -8.615850e-47 |
| Msa0584580 | Msa0787790 | 0.834349 | 3.154775e-56 | -8.615850e-47 |
| Msa0584580 | Msa0790920 | 0.804908 | 1.723166e-49 | -8.615850e-47 |
| Msa0584580 | Msa0798450 | 0.802885 | 4.536887e-49 | -8.615850e-47 |
| Msa0584580 | Msa0807670 | 0.821826 | 3.284193e-53 | -8.615850e-47 |
| Msa0584580 | Msa0807680 | 0.821484 | 3.940585e-53 | -8.615850e-47 |
| Msa0584580 | Msa0810440 | 0.827286 | 1.701198e-54 | -8.615850e-47 |
| Msa0584580 | Msa0812530 | 0.812071 | 5.097422e-51 | -8.615850e-47 |
| Msa0584580 | Msa0816630 | 0.845711 | 3.425825e-59 | -8.615850e-47 |
| Msa0584580 | Msa0824930 | 0.812671 | 3.770820e-51 | -8.615850e-47 |
| Msa0584580 | Msa0841730 | 0.832626 | 8.490876e-56 | -8.615850e-47 |
| Msa0584580 | Msa0852790 | 0.801174 | 1.019762e-48 | -8.615850e-47 |
| Msa0584580 | Msa0853440 | 0.804265 | 2.346812e-49 | -8.615850e-47 |
| Msa0584580 | Msa0863940 | 0.820080 | 8.286834e-53 | -8.615850e-47 |
| Msa0584580 | Msa0863990 | 0.858176 | 9.860386e-63 | -8.615850e-47 |
| Msa0584580 | Msa0870510 | 0.821260 | 4.438596e-53 | -8.615850e-47 |
| Msa0584580 | Msa0930740 | 0.808695 | 2.729610e-50 | -8.615850e-47 |
| Msa0584580 | Msa0945130 | 0.852608 | 4.129308e-61 | -8.615850e-47 |
| Msa0584580 | Msa0968050 | 0.817766 | 2.780658e-52 | -8.615850e-47 |
| Msa0584580 | Msa1011250 | 0.820172 | 7.893755e-53 | -8.615850e-47 |
| Msa0584580 | Msa1016960 | 0.842760 | 2.123679e-58 | -8.615850e-47 |
| Msa0584580 | Msa1023310 | 0.810702 | 1.010588e-50 | -8.615850e-47 |
| Msa0584580 | Msa1025750 | 0.814327 | 1.629763e-51 | -8.615850e-47 |
| Msa0584580 | Msa1031460 | 0.814152 | 1.781734e-51 | -8.615850e-47 |
| Msa0584580 | Msa1034450 | 0.800163 | 1.639184e-48 | -8.615850e-47 |
| Msa0584580 | Msa1058200 | 0.850077 | 2.143388e-60 | -8.615850e-47 |
| Msa0584580 | Msa1062040 | 0.823189 | 1.583678e-53 | -8.615850e-47 |
| Msa0584580 | Msa1068380 | 0.806416 | 8.314764e-50 | -8.615850e-47 |
| Msa0584580 | Msa1070540 | 0.830726 | 2.496828e-55 | -8.615850e-47 |
| Msa0584580 | Msa1089190 | 0.802658 | 5.054642e-49 | -8.615850e-47 |
| Msa0584580 | Msa1101240 | 0.831206 | 1.903357e-55 | -8.615850e-47 |
| Msa0584580 | Msa1107200 | 0.827349 | 1.643559e-54 | -8.615850e-47 |
| Msa0584580 | Msa1109670 | 0.807037 | 6.147228e-50 | -8.615850e-47 |
| Msa0584580 | Msa1109810 | 0.814777 | 1.296330e-51 | -8.615850e-47 |
| Msa0584580 | Msa1113100 | 0.847363 | 1.212692e-59 | -8.615850e-47 |
| Msa0584580 | Msa1114670 | 0.803183 | 3.936596e-49 | -8.615850e-47 |
| Msa0584580 | Msa1128790 | 0.809125 | 2.208392e-50 | -8.615850e-47 |
| Msa0584580 | Msa1131430 | 0.816019 | 6.862147e-52 | -8.615850e-47 |
| Msa0584580 | Msa1131790 | 0.848339 | 6.528569e-60 | -8.615850e-47 |
| Msa0584580 | Msa1150780 | 0.821242 | 4.479610e-53 | -8.615850e-47 |
| Msa0584580 | Msa1156820 | 0.803143 | 4.012183e-49 | -8.615850e-47 |
| Msa0584580 | Msa1157670 | 0.814275 | 1.673698e-51 | -8.615850e-47 |
| Msa0584580 | Msa1159170 | 0.803101 | 4.092596e-49 | -8.615850e-47 |
| Msa0584580 | Msa1180720 | 0.810929 | 9.026028e-51 | -8.615850e-47 |
| Msa0584580 | Msa1180930 | 0.801571 | 8.457651e-49 | -8.615850e-47 |
| Msa0584580 | Msa1183140 | 0.836569 | 8.665121e-57 | -8.615850e-47 |
| Msa0584580 | Msa1199870 | 0.829173 | 5.970024e-55 | -8.615850e-47 |
| Msa0584580 | Msa1208990 | 0.822895 | 1.854630e-53 | -8.615850e-47 |
| Msa0584580 | Msa1212470 | 0.825499 | 4.534270e-54 | -8.615850e-47 |
| Msa0584580 | Msa1214170 | 0.832259 | 1.046892e-55 | -8.615850e-47 |
| Msa0584580 | Msa1217260 | 0.805875 | 1.080718e-49 | -8.615850e-47 |
| Msa0584580 | Msa1218160 | 0.863551 | 2.297169e-64 | -8.615850e-47 |
| Msa0584580 | Msa1221220 | 0.834160 | 3.518575e-56 | -8.615850e-47 |
| Msa0584580 | Msa1221240 | 0.826886 | 2.120779e-54 | -8.615850e-47 |
| Msa0584580 | Msa1225580 | 0.877169 | 7.794119e-69 | -8.615850e-47 |
| Msa0584580 | Msa1229480 | 0.805278 | 1.442028e-49 | -8.615850e-47 |
| Msa0584580 | Msa1238680 | 0.813151 | 2.959790e-51 | -8.615850e-47 |
| Msa0584580 | Msa1246780 | 0.817670 | 2.923603e-52 | -8.615850e-47 |
| Msa0584580 | Msa1246790 | 0.827639 | 1.400042e-54 | -8.615850e-47 |
| Msa0584580 | Msa1252810 | 0.862170 | 6.126482e-64 | -8.615850e-47 |
| Msa0584580 | Msa1259860 | 0.827649 | 1.392149e-54 | -8.615850e-47 |
| Msa0584580 | Msa1260060 | 0.802435 | 5.618060e-49 | -8.615850e-47 |
| Msa0584580 | Msa1260680 | 0.822011 | 2.976312e-53 | -8.615850e-47 |
| Msa0584580 | Msa1284090 | 0.836975 | 6.828512e-57 | -8.615850e-47 |
| Msa0584580 | Msa1286210 | 0.819338 | 1.224004e-52 | -8.615850e-47 |
| Msa0584580 | Msa1286220 | 0.856777 | 2.557028e-62 | -8.615850e-47 |
| Msa0584580 | Msa1309760 | 0.838042 | 3.637313e-57 | -8.615850e-47 |
| Msa0584580 | Msa1312440 | 0.809596 | 1.749949e-50 | -8.615850e-47 |
| Msa0584580 | Msa1329900 | 0.816045 | 6.770045e-52 | -8.615850e-47 |
| Msa0584580 | Msa1355510 | 0.867923 | 9.564016e-66 | -8.615850e-47 |
| Msa0584580 | Msa1360020 | 0.832816 | 7.618677e-56 | -8.615850e-47 |
| Msa0584580 | Msa1364080 | 0.805423 | 1.344316e-49 | -8.615850e-47 |
| Msa0584580 | Msa1369320 | 0.834612 | 2.710779e-56 | -8.615850e-47 |
| Msa0584580 | Msa1369920 | -0.800785 | 1.224293e-48 | -8.615850e-47 |
| Msa0584580 | Msa1386000 | 0.803951 | 2.728322e-49 | -8.615850e-47 |
| Msa0584580 | Msa1389640 | 0.802983 | 4.330425e-49 | -8.615850e-47 |
| Msa0584580 | Msa1397390 | 0.841238 | 5.364850e-58 | -8.615850e-47 |
| Msa0584580 | Msa1407880 | 0.800751 | 1.244280e-48 | -8.615850e-47 |
| Msa0584580 | Msa1413800 | 0.801396 | 9.185473e-49 | -8.615850e-47 |
| Msa0584580 | Msa1420930 | 0.807627 | 4.607585e-50 | -8.615850e-47 |
| Msa0584580 | Msa1420940 | 0.846769 | 1.763496e-59 | -8.615850e-47 |
| Msa0584580 | Msa1433410 | 0.850962 | 1.209223e-60 | -8.615850e-47 |
| Msa0584580 | Msa1435320 | 0.823565 | 1.293654e-53 | -8.615850e-47 |
| Msa0584580 | Msa1443400 | 0.822358 | 2.472303e-53 | -8.615850e-47 |
| Msa0584580 | Msa1443620 | 0.858296 | 9.081461e-63 | -8.615850e-47 |
| Msa0584580 | Msa1446070 | 0.802946 | 4.405954e-49 | -8.615850e-47 |
| Msa0584580 | Msa1448040 | 0.823856 | 1.105660e-53 | -8.615850e-47 |
| Msa0584580 | Msa1451990 | 0.804251 | 2.363071e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584580 | MtrunA17_Chr4g0021961 | 96.364 | 110 | 4 | 0 | 1 | 110 | 1 | 110 | 3.41e-72 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 19 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCAACCCTCTTTATCTT+AGG | 0.308528 | 4_2:+4317028 | None:intergenic |
| GATAAAGAGGGTTGCTGTTA+AGG | 0.330238 | 4_2:-4317023 | Msa0584580:CDS |
| AGACAAGGATATGAGCTTCT+TGG | 0.379115 | 4_2:-4317178 | Msa0584580:CDS |
| CTAAAAGACCTAAGATAAAG+AGG | 0.402553 | 4_2:-4317036 | Msa0584580:CDS |
| CTAGCTCCCCTCTTCCTACT+AGG | 0.437842 | 4_2:-4316919 | Msa0584580:CDS |
| TATGAGCTTCTTGGTTTACA+AGG | 0.464864 | 4_2:-4317169 | Msa0584580:CDS |
| CCTACTAGGAAGATCCTTTG+AGG | 0.470260 | 4_2:-4316905 | None:intergenic |
| CCTCAAAGGATCTTCCTAGT+AGG | 0.477106 | 4_2:+4316905 | None:intergenic |
| GTTGCGAACGAGTGTGTTCA+TGG | 0.491971 | 4_2:+4317222 | None:intergenic |
| ATATCCTTGTCTCCTGCTGA+AGG | 0.525798 | 4_2:+4317189 | None:intergenic |
| GGATCTTCCTAGTAGGAAGA+GGG | 0.550819 | 4_2:+4316912 | None:intergenic |
| ACACCACTCTCACCTTCAGC+AGG | 0.551528 | 4_2:-4317201 | Msa0584580:CDS |
| AGGATCTTCCTAGTAGGAAG+AGG | 0.558203 | 4_2:+4316911 | None:intergenic |
| TCTCCTGCTGAAGGTGAGAG+TGG | 0.568581 | 4_2:+4317198 | None:intergenic |
| CTCACCTTCAGCAGGAGACA+AGG | 0.589904 | 4_2:-4317193 | Msa0584580:CDS |
| ATGAGCTTCTTGGTTTACAA+GGG | 0.601511 | 4_2:-4317168 | Msa0584580:CDS |
| TAAAAGACCTAAGATAAAGA+GGG | 0.605297 | 4_2:-4317035 | Msa0584580:CDS |
| GACGCAGAAGAGCCAAACAA+AGG | 0.632309 | 4_2:-4317114 | Msa0584580:CDS |
| GATCTTCCTAGTAGGAAGAG+GGG | 0.633617 | 4_2:+4316913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAAAAGACCTAAGATAAAGA+GGG | - | chr4_2:4317092-4317111 | Msa0584580:CDS | 25.0% |
| ! | GAGAAAGATTTTCCTTTGTT+TGG | + | chr4_2:4317028-4317047 | None:intergenic | 30.0% |
| ! | CTCTTTATCTTAGGTCTTTT+AGG | + | chr4_2:4317093-4317112 | None:intergenic | 30.0% |
| CTAAAAGACCTAAGATAAAG+AGG | - | chr4_2:4317091-4317110 | Msa0584580:CDS | 30.0% | |
| !!! | GTTTTGTTGTTTATGAGAAC+TGG | - | chr4_2:4317147-4317166 | Msa0584580:CDS | 30.0% |
| TATGAGCTTCTTGGTTTACA+AGG | - | chr4_2:4316958-4316977 | Msa0584580:CDS | 35.0% | |
| ATGAGCTTCTTGGTTTACAA+GGG | - | chr4_2:4316959-4316978 | Msa0584580:CDS | 35.0% | |
| AGACAAGGATATGAGCTTCT+TGG | - | chr4_2:4316949-4316968 | Msa0584580:CDS | 40.0% | |
| ACAGCAACCCTCTTTATCTT+AGG | + | chr4_2:4317102-4317121 | None:intergenic | 40.0% | |
| ! | GATAAAGAGGGTTGCTGTTA+AGG | - | chr4_2:4317104-4317123 | Msa0584580:CDS | 40.0% |
| ATATCCTTGTCTCCTGCTGA+AGG | + | chr4_2:4316941-4316960 | None:intergenic | 45.0% | |
| GATCTTCCTAGTAGGAAGAG+GGG | + | chr4_2:4317217-4317236 | None:intergenic | 45.0% | |
| GGATCTTCCTAGTAGGAAGA+GGG | + | chr4_2:4317218-4317237 | None:intergenic | 45.0% | |
| AGGATCTTCCTAGTAGGAAG+AGG | + | chr4_2:4317219-4317238 | None:intergenic | 45.0% | |
| GACGCAGAAGAGCCAAACAA+AGG | - | chr4_2:4317013-4317032 | Msa0584580:CDS | 50.0% | |
| ACACCACTCTCACCTTCAGC+AGG | - | chr4_2:4316926-4316945 | Msa0584580:CDS | 55.0% | |
| TCTCCTGCTGAAGGTGAGAG+TGG | + | chr4_2:4316932-4316951 | None:intergenic | 55.0% | |
| CTCACCTTCAGCAGGAGACA+AGG | - | chr4_2:4316934-4316953 | Msa0584580:CDS | 55.0% | |
| CTAGCTCCCCTCTTCCTACT+AGG | - | chr4_2:4317208-4317227 | Msa0584580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 4316907 | 4317242 | 4316907 | ID=Msa0584580;Name=Msa0584580 |
| chr4_2 | mRNA | 4316907 | 4317242 | 4316907 | ID=Msa0584580-mRNA-1;Parent=Msa0584580;Name=Msa0584580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|111 |
| chr4_2 | exon | 4316907 | 4317242 | 4316907 | ID=Msa0584580-mRNA-1:exon:1132;Parent=Msa0584580-mRNA-1 |
| chr4_2 | CDS | 4316907 | 4317242 | 4316907 | ID=Msa0584580-mRNA-1:cds;Parent=Msa0584580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
