Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586300 | XP_004507018.1 | 72.086 | 326 | 36 | 6 | 2 | 313 | 14 | 298 | 1.42e-152 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586300 | sp|Q8H1G0|GAT28_ARATH | 50.926 | 324 | 100 | 7 | 3 | 310 | 15 | 295 | 2.84e-95 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0586300 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543500 | Msa0586300 | 0.814040 | 1.886059e-51 | -8.615850e-47 |
| Msa0586300 | Msa0626330 | 0.854721 | 1.018998e-61 | -8.615850e-47 |
| Msa0586300 | Msa0664410 | 0.856449 | 3.193918e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586300 | MtrunA17_Chr3g0132761 | 42.045 | 264 | 87 | 5 | 60 | 312 | 57 | 265 | 5.71e-49 | 165 |
| Msa0586300 | MtrunA17_Chr5g0427661 | 39.145 | 304 | 90 | 11 | 29 | 287 | 22 | 275 | 8.04e-47 | 159 |
| Msa0586300 | MtrunA17_Chr4g0002231 | 59.091 | 132 | 14 | 2 | 142 | 271 | 42 | 135 | 3.99e-44 | 147 |
| Msa0586300 | MtrunA17_Chr3g0132751 | 41.475 | 217 | 75 | 3 | 74 | 279 | 69 | 244 | 1.28e-43 | 153 |
| Msa0586300 | MtrunA17_Chr4g0049741 | 39.744 | 234 | 84 | 5 | 72 | 291 | 41 | 231 | 2.18e-40 | 144 |
| Msa0586300 | MtrunA17_Chr4g0002261 | 59.615 | 104 | 3 | 2 | 102 | 204 | 1 | 66 | 1.97e-28 | 104 |
| Msa0586300 | MtrunA17_Chr4g0002251 | 75.806 | 62 | 7 | 1 | 237 | 298 | 9 | 62 | 8.09e-25 | 95.5 |
| Msa0586300 | MtrunA17_Chr3g0102511 | 41.176 | 85 | 45 | 1 | 195 | 279 | 11 | 90 | 4.67e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586300 | AT1G51600.1 | 50.926 | 324 | 100 | 7 | 3 | 310 | 15 | 295 | 2.88e-96 | 287 |
| Msa0586300 | AT1G51600.2 | 50.926 | 324 | 100 | 7 | 3 | 310 | 15 | 295 | 2.88e-96 | 287 |
| Msa0586300 | AT3G21175.2 | 50.316 | 316 | 95 | 7 | 5 | 305 | 17 | 285 | 5.61e-89 | 268 |
| Msa0586300 | AT3G21175.1 | 50.000 | 318 | 95 | 8 | 5 | 305 | 17 | 287 | 5.39e-87 | 263 |
| Msa0586300 | AT3G21175.3 | 44.898 | 245 | 79 | 3 | 5 | 238 | 17 | 216 | 1.97e-56 | 182 |
| Msa0586300 | AT4G24470.3 | 39.914 | 233 | 84 | 5 | 59 | 279 | 68 | 256 | 4.19e-44 | 153 |
| Msa0586300 | AT4G24470.1 | 39.914 | 233 | 84 | 5 | 59 | 279 | 68 | 256 | 5.38e-44 | 153 |
| Msa0586300 | AT4G24470.2 | 39.914 | 233 | 84 | 5 | 59 | 279 | 68 | 256 | 5.38e-44 | 153 |
Find 89 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTCATTCTTGTTTAA+TGG | 0.137752 | 4_2:+7399994 | None:intergenic |
| TCAATCTGTACTACTGTTAT+TGG | 0.235229 | 4_2:-7401713 | Msa0586300:CDS |
| TGGACTTATGTGGGCAAATA+AGG | 0.243603 | 4_2:-7400398 | Msa0586300:intron |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_2:+7400430 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_2:+7400421 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.321682 | 4_2:-7400774 | Msa0586300:intron |
| TGACAATCACACTTTAATAA+TGG | 0.323443 | 4_2:-7402133 | Msa0586300:CDS |
| ATGGATCAAGGGAATGATAT+TGG | 0.357672 | 4_2:-7402114 | Msa0586300:CDS |
| CAATCTGTACTACTGTTATT+GGG | 0.360369 | 4_2:-7401712 | Msa0586300:CDS |
| ATCAAGGGCAGCAACCTTGC+CGG | 0.382086 | 4_2:-7400028 | Msa0586300:CDS |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_2:+7400448 | None:intergenic |
| GCAAGGTTGCTGCCCTTGAT+AGG | 0.404698 | 4_2:+7400031 | None:intergenic |
| GTCATGAAGATTTCCATTGT+TGG | 0.406240 | 4_2:+7402152 | None:intergenic |
| ATCTCTAAGCACTGTCTGAT+TGG | 0.416220 | 4_2:+7399859 | None:intergenic |
| ACCTTCCATGCCAATTTCTC+CGG | 0.421602 | 4_2:-7401665 | Msa0586300:CDS |
| TCTCATTCCCATCGCTCATA+TGG | 0.436958 | 4_2:+7402253 | None:intergenic |
| TGAACCACAGGGAGCGCTTA+GGG | 0.440040 | 4_2:-7400055 | Msa0586300:intron |
| TGGACTTGGCAGATGTGAAT+TGG | 0.440859 | 4_2:+7400751 | None:intergenic |
| ATTGGCATGGAAGGTAAGGT+TGG | 0.459291 | 4_2:+7401673 | None:intergenic |
| CACACTTTAATAATGGATCA+AGG | 0.459438 | 4_2:-7402126 | Msa0586300:CDS |
| CCTGTGTTCCACCCTTTCAC+TGG | 0.460574 | 4_2:+7401299 | None:intergenic |
| AGACTCATCCGGATTGGACT+TGG | 0.463085 | 4_2:+7400737 | None:intergenic |
| GAGCGCTTAGGGACCTATCA+AGG | 0.466145 | 4_2:-7400044 | Msa0586300:CDS |
| TTGAACCACAGGGAGCGCTT+AGG | 0.472073 | 4_2:-7400056 | Msa0586300:intron |
| TCAGCTGATGCAGACTCATC+CGG | 0.472877 | 4_2:+7400726 | None:intergenic |
| TTACACAGTATCTTGCTGTT+GGG | 0.474472 | 4_2:+7400656 | None:intergenic |
| TTCCACCCTTTCACTGGTAT+CGG | 0.480598 | 4_2:+7401305 | None:intergenic |
| TCAGAATAATAATAATTTGG+AGG | 0.481083 | 4_2:-7399882 | Msa0586300:intron |
| CACATCTGCCAAGTCCAATC+CGG | 0.483186 | 4_2:-7400745 | Msa0586300:CDS |
| TTCGTAAAGAAGTAGCATTA+AGG | 0.488066 | 4_2:-7401436 | Msa0586300:intron |
| CGGAACAAGTGAAGGTTTGA+CGG | 0.488246 | 4_2:-7400694 | Msa0586300:CDS |
| GCAATGCTTGTGGACTTATG+TGG | 0.493003 | 4_2:-7400408 | Msa0586300:CDS |
| CTTACACAGTATCTTGCTGT+TGG | 0.493662 | 4_2:+7400655 | None:intergenic |
| GGTTTGACGGCAGACAATAA+TGG | 0.494804 | 4_2:-7400681 | Msa0586300:CDS |
| CGTTACCGATACCAGTGAAA+GGG | 0.513718 | 4_2:-7401310 | Msa0586300:CDS |
| TATAGGATGTTGTTCATCAC+TGG | 0.518790 | 4_2:+7402305 | None:intergenic |
| TGTTCATATGGCATATGTAT+AGG | 0.519920 | 4_2:+7402288 | None:intergenic |
| GATCAAAATAACGGCGGTGG+CGG | 0.521917 | 4_2:-7402222 | Msa0586300:CDS |
| AGAAATTGGCATGGAAGGTA+AGG | 0.522598 | 4_2:+7401669 | None:intergenic |
| GAAGATTTCCATTGTTGGAG+TGG | 0.525496 | 4_2:+7402157 | None:intergenic |
| GGTGAAATCCACTCCAACAA+TGG | 0.530034 | 4_2:-7402165 | Msa0586300:CDS |
| TTCTCCATTAAACAAGAATG+AGG | 0.532237 | 4_2:-7399998 | Msa0586300:intron |
| TGCAACCCGTGATGTTCATA+TGG | 0.534256 | 4_2:+7402276 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_2:-7400445 | Msa0586300:CDS |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_2:-7400418 | Msa0586300:CDS |
| ATAAATTGCGGAACAAGTGA+AGG | 0.554129 | 4_2:-7400702 | Msa0586300:CDS |
| TCCGGAGAAATTGGCATGGA+AGG | 0.555042 | 4_2:+7401664 | None:intergenic |
| TGATGCAGACTCATCCGGAT+TGG | 0.558123 | 4_2:+7400731 | None:intergenic |
| AAATGTAAAGGTCTGTCATG+AGG | 0.563085 | 4_2:+7399826 | None:intergenic |
| ACACTTTAATAATGGATCAA+GGG | 0.566567 | 4_2:-7402125 | Msa0586300:CDS |
| TCAATGAAGCTAATCTCTGA+GGG | 0.569675 | 4_2:+7401516 | None:intergenic |
| TGGAGAATTATGTGCCGGCA+AGG | 0.571633 | 4_2:+7400014 | None:intergenic |
| GGGTTGCACCATATGAGCGA+TGG | 0.573302 | 4_2:-7402261 | Msa0586300:CDS |
| GGCATGGAAGGTAAGGTTGG+AGG | 0.573711 | 4_2:+7401676 | None:intergenic |
| GACGATCAAAATAACGGCGG+TGG | 0.573965 | 4_2:-7402225 | Msa0586300:CDS |
| AATGTAAAGGTCTGTCATGA+GGG | 0.575457 | 4_2:+7399827 | None:intergenic |
| TCGTTACCGATACCAGTGAA+AGG | 0.576427 | 4_2:-7401311 | Msa0586300:CDS |
| GGAGGAAGTGAGCGTGCGGA+AGG | 0.580150 | 4_2:-7402186 | Msa0586300:CDS |
| CAATGCTTGTGGACTTATGT+GGG | 0.580586 | 4_2:-7400407 | Msa0586300:CDS |
| TTTAATGGAGAATTATGTGC+CGG | 0.581798 | 4_2:+7400009 | None:intergenic |
| TAGATTTCGTGAAAAGCGGA+AGG | 0.584600 | 4_2:-7401492 | Msa0586300:CDS |
| TTCCATGCCAATTTCTCCGG+AGG | 0.584851 | 4_2:-7401662 | Msa0586300:CDS |
| AAAGGGTGGAACACAGGACA+TGG | 0.585214 | 4_2:-7401293 | Msa0586300:CDS |
| ATATGCCATATGAACATCAC+GGG | 0.590381 | 4_2:-7402281 | Msa0586300:CDS |
| TGATTAGATTTCGTGAAAAG+CGG | 0.593015 | 4_2:-7401496 | Msa0586300:CDS |
| GGTTGCACCATATGAGCGAT+GGG | 0.598338 | 4_2:-7402260 | Msa0586300:CDS |
| ATCAATGAAGCTAATCTCTG+AGG | 0.598501 | 4_2:+7401515 | None:intergenic |
| ATGGATGACGATCAAAATAA+CGG | 0.601177 | 4_2:-7402231 | Msa0586300:CDS |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_2:-7400444 | Msa0586300:CDS |
| CCAGTGAAAGGGTGGAACAC+AGG | 0.603935 | 4_2:-7401299 | Msa0586300:CDS |
| CTGTACTACTGTTATTGGGA+GGG | 0.609779 | 4_2:-7401708 | Msa0586300:CDS |
| TTCTCCGGAGGAAAATAACC+AGG | 0.618970 | 4_2:-7401650 | Msa0586300:intron |
| TACCGATACCAGTGAAAGGG+TGG | 0.622723 | 4_2:-7401307 | Msa0586300:CDS |
| AGCGCTTAGGGACCTATCAA+GGG | 0.623206 | 4_2:-7400043 | Msa0586300:CDS |
| GGCGGTGATTCTAACTGCGG+AGG | 0.624259 | 4_2:-7402204 | Msa0586300:CDS |
| CATATGCCATATGAACATCA+CGG | 0.625092 | 4_2:-7402282 | Msa0586300:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_2:-7400459 | Msa0586300:CDS |
| TCTGTACTACTGTTATTGGG+AGG | 0.631795 | 4_2:-7401709 | Msa0586300:CDS |
| TATGAGCGATGGGAATGAGA+TGG | 0.634902 | 4_2:-7402250 | Msa0586300:CDS |
| CATGTCAGTTGTAGGCATTG+TGG | 0.641895 | 4_2:-7400490 | Msa0586300:intron |
| GCATCAGCTGAAATAAATTG+CGG | 0.642078 | 4_2:-7400714 | Msa0586300:CDS |
| TTCCTCCGGAGAAATTGGCA+TGG | 0.644718 | 4_2:+7401660 | None:intergenic |
| CTGCGGAGGAAGTGAGCGTG+CGG | 0.653770 | 4_2:-7402190 | Msa0586300:CDS |
| TAAGTCCACAAGCATTGCAG+AGG | 0.655536 | 4_2:+7400413 | None:intergenic |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_2:-7400454 | Msa0586300:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.674174 | 4_2:+7400414 | None:intergenic |
| GGGTGGAACACAGGACATGG+TGG | 0.695925 | 4_2:-7401290 | Msa0586300:CDS |
| GGTGGCGGTGATTCTAACTG+CGG | 0.698443 | 4_2:-7402207 | Msa0586300:CDS |
| GATGACGATCAAAATAACGG+CGG | 0.778224 | 4_2:-7402228 | Msa0586300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTTATAATAATCTT+AGG | - | chr4_2:7400397-7400416 | Msa0586300:intron | 10.0% |
| !! | TAAAAATTGTAATAAGAAAA+TGG | - | chr4_2:7401070-7401089 | Msa0586300:intron | 10.0% |
| !!! | ATTATTATTATTCTGAAAAT+AGG | + | chr4_2:7402261-7402280 | None:intergenic | 10.0% |
| !!! | TTTTCAGAATAATAATAATT+TGG | - | chr4_2:7402262-7402281 | Msa0586300:CDS | 10.0% |
| !!! | TTCATTTTAAATTTCTAACA+AGG | - | chr4_2:7400190-7400209 | Msa0586300:intron | 15.0% |
| !!! | ATATTATTTTAGACTTATCA+AGG | + | chr4_2:7400889-7400908 | None:intergenic | 15.0% |
| !!! | TTTTCAAAATTTCTGAAAAA+TGG | - | chr4_2:7401035-7401054 | Msa0586300:intron | 15.0% |
| !! | GTATTCTATTCTATATATTA+TGG | - | chr4_2:7401559-7401578 | Msa0586300:intron | 15.0% |
| !! | AAACGAATAAATTAAAAAGA+AGG | + | chr4_2:7402056-7402075 | None:intergenic | 15.0% |
| !! | CTATCTATGATAAAATAAGA+GGG | + | chr4_2:7400263-7400282 | None:intergenic | 20.0% |
| !! | ACTATCTATGATAAAATAAG+AGG | + | chr4_2:7400264-7400283 | None:intergenic | 20.0% |
| !!! | ACATTTTATTAGGCATTTAT+TGG | - | chr4_2:7400587-7400606 | Msa0586300:intron | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | + | chr4_2:7401826-7401845 | None:intergenic | 20.0% |
| !! | TCAGAATAATAATAATTTGG+AGG | - | chr4_2:7402265-7402284 | Msa0586300:CDS | 20.0% |
| ! | TGACAATCACACTTTAATAA+TGG | - | chr4_2:7400014-7400033 | Msa0586300:CDS | 25.0% |
| !!! | ACACTTTAATAATGGATCAA+GGG | - | chr4_2:7400022-7400041 | Msa0586300:CDS | 25.0% |
| !!! | ATTTTTAGATTGAACTTGCT+TGG | - | chr4_2:7400753-7400772 | Msa0586300:CDS | 25.0% |
| ! | AATTTGAGCACTATATTATG+AGG | + | chr4_2:7400932-7400951 | None:intergenic | 25.0% |
| ! | CCATTTCAACTAATAATCAT+AGG | + | chr4_2:7401122-7401141 | None:intergenic | 25.0% |
| ! | CCTATGATTATTAGTTGAAA+TGG | - | chr4_2:7401119-7401138 | Msa0586300:intron | 25.0% |
| ! | ATATAGCAAAATAACAACGT+CGG | + | chr4_2:7401320-7401339 | None:intergenic | 25.0% |
| ! | CAAATACGAAAAACTTCTTT+AGG | - | chr4_2:7401356-7401375 | Msa0586300:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_2:7401373-7401392 | Msa0586300:intron | 25.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | + | chr4_2:7401610-7401629 | None:intergenic | 25.0% |
| !!! | GGAACTTTTCGATTATTTTT+CGG | + | chr4_2:7401859-7401878 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | + | chr4_2:7401910-7401929 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | - | chr4_2:7402081-7402100 | Msa0586300:intron | 25.0% |
| TGTTCATATGGCATATGTAT+AGG | + | chr4_2:7399862-7399881 | None:intergenic | 30.0% | |
| ATGGATGACGATCAAAATAA+CGG | - | chr4_2:7399916-7399935 | Msa0586300:intron | 30.0% | |
| !! | CACACTTTAATAATGGATCA+AGG | - | chr4_2:7400021-7400040 | Msa0586300:CDS | 30.0% |
| !!! | ATAAGTTGATGAACCTTTTC+TGG | + | chr4_2:7400114-7400133 | None:intergenic | 30.0% |
| ATCCATTGTTAATCCTGTTA+TGG | - | chr4_2:7400344-7400363 | Msa0586300:intron | 30.0% | |
| TCAATCTGTACTACTGTTAT+TGG | - | chr4_2:7400434-7400453 | Msa0586300:CDS | 30.0% | |
| CAATCTGTACTACTGTTATT+GGG | - | chr4_2:7400435-7400454 | Msa0586300:CDS | 30.0% | |
| GTATTACTACATTACTTGGT+TGG | - | chr4_2:7400519-7400538 | Msa0586300:intron | 30.0% | |
| ! | GGCTCATGAAACATTTTATT+AGG | - | chr4_2:7400577-7400596 | Msa0586300:intron | 30.0% |
| TGATTAGATTTCGTGAAAAG+CGG | - | chr4_2:7400651-7400670 | Msa0586300:intron | 30.0% | |
| TTCGTAAAGAAGTAGCATTA+AGG | - | chr4_2:7400711-7400730 | Msa0586300:CDS | 30.0% | |
| AAAGAAGTAGCATTAAGGTA+TGG | - | chr4_2:7400716-7400735 | Msa0586300:CDS | 30.0% | |
| ATTATCATACATACGGTGTT+AGG | + | chr4_2:7401171-7401190 | None:intergenic | 30.0% | |
| CCAGAAGATTATCATACATA+CGG | + | chr4_2:7401178-7401197 | None:intergenic | 30.0% | |
| !!! | TGGCTCATTTTTTAACAAGT+GGG | - | chr4_2:7401520-7401539 | Msa0586300:CDS | 30.0% |
| !! | ATATATTATGGTTGACTCGA+TGG | - | chr4_2:7401571-7401590 | Msa0586300:intron | 30.0% |
| AATTTCAACCTACACTGAAA+TGG | - | chr4_2:7401620-7401639 | Msa0586300:intron | 30.0% | |
| AAAAGATAGCAATTGACATG+AGG | + | chr4_2:7401796-7401815 | None:intergenic | 30.0% | |
| !! | CAAATCTGAATCAAGTTGAA+TGG | + | chr4_2:7401979-7401998 | None:intergenic | 30.0% |
| CATTCAACTTGATTCAGATT+TGG | - | chr4_2:7401977-7401996 | Msa0586300:intron | 30.0% | |
| !!! | ATTTGGCTTTTATACTCGAA+TGG | - | chr4_2:7401994-7402013 | Msa0586300:intron | 30.0% |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | - | chr4_2:7402080-7402099 | Msa0586300:intron | 30.0% |
| TTTAATGGAGAATTATGTGC+CGG | + | chr4_2:7402141-7402160 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | - | chr4_2:7402149-7402168 | Msa0586300:CDS | 30.0% | |
| ! | TCAACCTCATTCTTGTTTAA+TGG | + | chr4_2:7402156-7402175 | None:intergenic | 30.0% |
| TATAGGATGTTGTTCATCAC+TGG | + | chr4_2:7399845-7399864 | None:intergenic | 35.0% | |
| CATATGCCATATGAACATCA+CGG | - | chr4_2:7399865-7399884 | Msa0586300:CDS | 35.0% | |
| ATATGCCATATGAACATCAC+GGG | - | chr4_2:7399866-7399885 | Msa0586300:CDS | 35.0% | |
| GTCATGAAGATTTCCATTGT+TGG | + | chr4_2:7399998-7400017 | None:intergenic | 35.0% | |
| ATGGATCAAGGGAATGATAT+TGG | - | chr4_2:7400033-7400052 | Msa0586300:CDS | 35.0% | |
| ! | TCAGCTTACTTTGTCTTTTC+AGG | - | chr4_2:7400059-7400078 | Msa0586300:intron | 35.0% |
| ! | CAGCTTACTTTGTCTTTTCA+GGG | - | chr4_2:7400060-7400079 | Msa0586300:intron | 35.0% |
| AAATTATAACACACGCCTCA+AGG | + | chr4_2:7400302-7400321 | None:intergenic | 35.0% | |
| GTCCATAACAGGATTAACAA+TGG | + | chr4_2:7400349-7400368 | None:intergenic | 35.0% | |
| TAAAATCAAACCCTATGCAG+GGG | + | chr4_2:7400375-7400394 | None:intergenic | 35.0% | |
| CTAAAATCAAACCCTATGCA+GGG | + | chr4_2:7400376-7400395 | None:intergenic | 35.0% | |
| ! | TCTAAAATCAAACCCTATGC+AGG | + | chr4_2:7400377-7400396 | None:intergenic | 35.0% |
| !! | TAATCTTAGGTGTCATTGCT+AGG | - | chr4_2:7400410-7400429 | Msa0586300:CDS | 35.0% |
| ! | TTATTTTCCTCCGGAGAAAT+TGG | + | chr4_2:7400495-7400514 | None:intergenic | 35.0% |
| !! | AATACCTGGTTATTTTCCTC+CGG | + | chr4_2:7400504-7400523 | None:intergenic | 35.0% |
| CCAAGTAATGTAGTAATACC+TGG | + | chr4_2:7400518-7400537 | None:intergenic | 35.0% | |
| CCAGGTATTACTACATTACT+TGG | - | chr4_2:7400515-7400534 | Msa0586300:intron | 35.0% | |
| TCAATGAAGCTAATCTCTGA+GGG | + | chr4_2:7400634-7400653 | None:intergenic | 35.0% | |
| ATCAATGAAGCTAATCTCTG+AGG | + | chr4_2:7400635-7400654 | None:intergenic | 35.0% | |
| CGAAATCCATAATTGATTGC+AGG | - | chr4_2:7400956-7400975 | Msa0586300:intron | 35.0% | |
| AGTTTGCCTGCAATCAATTA+TGG | + | chr4_2:7400965-7400984 | None:intergenic | 35.0% | |
| CCGTATGTATGATAATCTTC+TGG | - | chr4_2:7401175-7401194 | Msa0586300:intron | 35.0% | |
| GCATCAGCTGAAATAAATTG+CGG | - | chr4_2:7401433-7401452 | Msa0586300:intron | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | - | chr4_2:7401445-7401464 | Msa0586300:CDS | 35.0% | |
| !! | TTACACAGTATCTTGCTGTT+GGG | + | chr4_2:7401494-7401513 | None:intergenic | 35.0% |
| ! | AAGATACTGTGTAAGTTGAC+TGG | - | chr4_2:7401500-7401519 | Msa0586300:CDS | 35.0% |
| !!! | CTGGCTCATTTTTTAACAAG+TGG | - | chr4_2:7401519-7401538 | Msa0586300:CDS | 35.0% |
| AAGAAAGACCATTTCAGTGT+AGG | + | chr4_2:7401631-7401650 | None:intergenic | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | - | chr4_2:7401649-7401668 | Msa0586300:intron | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | - | chr4_2:7401756-7401775 | Msa0586300:intron | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | + | chr4_2:7401959-7401978 | None:intergenic | 35.0% | |
| !!! | AGGCACAGTTTTTTGTTGAA+AGG | + | chr4_2:7402036-7402055 | None:intergenic | 35.0% |
| GAAGATCTAAGTTCCTATGT+TGG | + | chr4_2:7402224-7402243 | None:intergenic | 35.0% | |
| GATGACGATCAAAATAACGG+CGG | - | chr4_2:7399919-7399938 | Msa0586300:intron | 40.0% | |
| GAAGATTTCCATTGTTGGAG+TGG | + | chr4_2:7399993-7400012 | None:intergenic | 40.0% | |
| TCTGTACTACTGTTATTGGG+AGG | - | chr4_2:7400438-7400457 | Msa0586300:CDS | 40.0% | |
| CTGTACTACTGTTATTGGGA+GGG | - | chr4_2:7400439-7400458 | Msa0586300:CDS | 40.0% | |
| AGAAATTGGCATGGAAGGTA+AGG | + | chr4_2:7400481-7400500 | None:intergenic | 40.0% | |
| !! | TTCGATTGATAGCCTTTTGC+TGG | - | chr4_2:7400544-7400563 | Msa0586300:intron | 40.0% |
| CCAGATATTTGACCAGCAAA+AGG | + | chr4_2:7400559-7400578 | None:intergenic | 40.0% | |
| ! | CCTTTTGCTGGTCAAATATC+TGG | - | chr4_2:7400556-7400575 | Msa0586300:intron | 40.0% |
| TAGATTTCGTGAAAAGCGGA+AGG | - | chr4_2:7400655-7400674 | Msa0586300:intron | 40.0% | |
| !! | GTATGATAATCTTCTGGCTC+TGG | - | chr4_2:7401181-7401200 | Msa0586300:intron | 40.0% |
| ! | CTTACACAGTATCTTGCTGT+TGG | + | chr4_2:7401495-7401514 | None:intergenic | 40.0% |
| CAATGCTTGTGGACTTATGT+GGG | - | chr4_2:7401740-7401759 | Msa0586300:intron | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | - | chr4_2:7401749-7401768 | Msa0586300:intron | 40.0% | |
| ATCGAAAAGTTCCATGACTG+TGG | - | chr4_2:7401866-7401885 | Msa0586300:intron | 40.0% | |
| GATGTTTCTCTTGCCAACAT+AGG | - | chr4_2:7402208-7402227 | Msa0586300:CDS | 40.0% | |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | + | chr4_2:7402291-7402310 | None:intergenic | 40.0% |
| TGCAACCCGTGATGTTCATA+TGG | + | chr4_2:7399874-7399893 | None:intergenic | 45.0% | |
| TCTCATTCCCATCGCTCATA+TGG | + | chr4_2:7399897-7399916 | None:intergenic | 45.0% | |
| TATGAGCGATGGGAATGAGA+TGG | - | chr4_2:7399897-7399916 | Msa0586300:intron | 45.0% | |
| GGTGAAATCCACTCCAACAA+TGG | - | chr4_2:7399982-7400001 | Msa0586300:intron | 45.0% | |
| ATGCAGTTTAACACGCCTTG+AGG | - | chr4_2:7400284-7400303 | Msa0586300:intron | 45.0% | |
| ! | TTATGGACTATCCCCTGCAT+AGG | - | chr4_2:7400361-7400380 | Msa0586300:intron | 45.0% |
| ! | TATGGACTATCCCCTGCATA+GGG | - | chr4_2:7400362-7400381 | Msa0586300:intron | 45.0% |
| ATTGGCATGGAAGGTAAGGT+TGG | + | chr4_2:7400477-7400496 | None:intergenic | 45.0% | |
| ACCTTCCATGCCAATTTCTC+CGG | - | chr4_2:7400482-7400501 | Msa0586300:intron | 45.0% | |
| TTCTCCGGAGGAAAATAACC+AGG | - | chr4_2:7400497-7400516 | Msa0586300:intron | 45.0% | |
| ! | TGAGGGACGCTGAATTTTTC+TGG | + | chr4_2:7400617-7400636 | None:intergenic | 45.0% |
| TCGTTACCGATACCAGTGAA+AGG | - | chr4_2:7400836-7400855 | Msa0586300:intron | 45.0% | |
| CGTTACCGATACCAGTGAAA+GGG | - | chr4_2:7400837-7400856 | Msa0586300:intron | 45.0% | |
| TTCCACCCTTTCACTGGTAT+CGG | + | chr4_2:7400845-7400864 | None:intergenic | 45.0% | |
| GTGTTAGGACAGAACTCCAT+TGG | + | chr4_2:7401156-7401175 | None:intergenic | 45.0% | |
| GTCGGTCATGATGTGGATTT+AGG | + | chr4_2:7401302-7401321 | None:intergenic | 45.0% | |
| TAACAACGTCGGTCATGATG+TGG | + | chr4_2:7401309-7401328 | None:intergenic | 45.0% | |
| TGGACTTGGCAGATGTGAAT+TGG | + | chr4_2:7401399-7401418 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | - | chr4_2:7401453-7401472 | Msa0586300:CDS | 45.0% | |
| GGTTTGACGGCAGACAATAA+TGG | - | chr4_2:7401466-7401485 | Msa0586300:CDS | 45.0% | |
| ! | CATGTCAGTTGTAGGCATTG+TGG | - | chr4_2:7401657-7401676 | Msa0586300:CDS | 45.0% |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_2:7401736-7401755 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | + | chr4_2:7401737-7401756 | None:intergenic | 45.0% |
| GCAATGCTTGTGGACTTATG+TGG | - | chr4_2:7401739-7401758 | Msa0586300:intron | 45.0% | |
| TAAACCACAGTCCACAGTCA+TGG | + | chr4_2:7401880-7401899 | None:intergenic | 45.0% | |
| GGTTGCACCATATGAGCGAT+GGG | - | chr4_2:7399887-7399906 | Msa0586300:intron | 50.0% | |
| GACGATCAAAATAACGGCGG+TGG | - | chr4_2:7399922-7399941 | Msa0586300:intron | 50.0% | |
| GATCAAAATAACGGCGGTGG+CGG | - | chr4_2:7399925-7399944 | Msa0586300:intron | 50.0% | |
| TGACTCTGTGTCGCCAGAAA+AGG | - | chr4_2:7400098-7400117 | Msa0586300:intron | 50.0% | |
| TGCAGGGGATAGTCCATAAC+AGG | + | chr4_2:7400360-7400379 | None:intergenic | 50.0% | |
| TCCGGAGAAATTGGCATGGA+AGG | + | chr4_2:7400486-7400505 | None:intergenic | 50.0% | |
| TTCCATGCCAATTTCTCCGG+AGG | - | chr4_2:7400485-7400504 | Msa0586300:intron | 50.0% | |
| TTCCTCCGGAGAAATTGGCA+TGG | + | chr4_2:7400490-7400509 | None:intergenic | 50.0% | |
| TACCGATACCAGTGAAAGGG+TGG | - | chr4_2:7400840-7400859 | Msa0586300:intron | 50.0% | |
| AAAGGGTGGAACACAGGACA+TGG | - | chr4_2:7400854-7400873 | Msa0586300:intron | 50.0% | |
| !! | AGAACTCCATTGGAGTGCTG+GGG | + | chr4_2:7401146-7401165 | None:intergenic | 50.0% |
| ! | CAGAACTCCATTGGAGTGCT+GGG | + | chr4_2:7401147-7401166 | None:intergenic | 50.0% |
| ACAGAACTCCATTGGAGTGC+TGG | + | chr4_2:7401148-7401167 | None:intergenic | 50.0% | |
| CACATCTGCCAAGTCCAATC+CGG | - | chr4_2:7401402-7401421 | Msa0586300:intron | 50.0% | |
| ! | AGACTCATCCGGATTGGACT+TGG | + | chr4_2:7401413-7401432 | None:intergenic | 50.0% |
| TGATGCAGACTCATCCGGAT+TGG | + | chr4_2:7401419-7401438 | None:intergenic | 50.0% | |
| TCAGCTGATGCAGACTCATC+CGG | + | chr4_2:7401424-7401443 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_2:7401688-7401707 | Msa0586300:CDS | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_2:7401729-7401748 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_2:7401729-7401748 | Msa0586300:intron | 50.0% | |
| ! | AGTTCCATGACTGTGGACTG+TGG | - | chr4_2:7401873-7401892 | Msa0586300:intron | 50.0% |
| AGCGCTTAGGGACCTATCAA+GGG | - | chr4_2:7402104-7402123 | Msa0586300:CDS | 50.0% | |
| ! | TGGAGAATTATGTGCCGGCA+AGG | + | chr4_2:7402136-7402155 | None:intergenic | 50.0% |
| GGGTTGCACCATATGAGCGA+TGG | - | chr4_2:7399886-7399905 | Msa0586300:intron | 55.0% | |
| ! | GGTGGCGGTGATTCTAACTG+CGG | - | chr4_2:7399940-7399959 | Msa0586300:intron | 55.0% |
| GGCATGGAAGGTAAGGTTGG+AGG | + | chr4_2:7400474-7400493 | None:intergenic | 55.0% | |
| CCTGTGTTCCACCCTTTCAC+TGG | + | chr4_2:7400851-7400870 | None:intergenic | 55.0% | |
| CCAGTGAAAGGGTGGAACAC+AGG | - | chr4_2:7400848-7400867 | Msa0586300:intron | 55.0% | |
| AATGGACCCCAGCACTCCAA+TGG | - | chr4_2:7401137-7401156 | Msa0586300:intron | 55.0% | |
| !! | TTGAACCACAGGGAGCGCTT+AGG | - | chr4_2:7402091-7402110 | Msa0586300:CDS | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | - | chr4_2:7402092-7402111 | Msa0586300:CDS | 55.0% |
| GAGCGCTTAGGGACCTATCA+AGG | - | chr4_2:7402103-7402122 | Msa0586300:CDS | 55.0% | |
| GCAAGGTTGCTGCCCTTGAT+AGG | + | chr4_2:7402119-7402138 | None:intergenic | 55.0% | |
| ATCAAGGGCAGCAACCTTGC+CGG | - | chr4_2:7402119-7402138 | Msa0586300:CDS | 55.0% | |
| GGCGGTGATTCTAACTGCGG+AGG | - | chr4_2:7399943-7399962 | Msa0586300:intron | 60.0% | |
| GGGTGGAACACAGGACATGG+TGG | - | chr4_2:7400857-7400876 | Msa0586300:intron | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_2:7401702-7401721 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_2:7401702-7401721 | Msa0586300:CDS | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_2:7401703-7401722 | Msa0586300:CDS | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_2:7401720-7401739 | None:intergenic | 60.0% | |
| CTGCGGAGGAAGTGAGCGTG+CGG | - | chr4_2:7399957-7399976 | Msa0586300:intron | 65.0% | |
| GGAGGAAGTGAGCGTGCGGA+AGG | - | chr4_2:7399961-7399980 | Msa0586300:intron | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_2:7401693-7401712 | Msa0586300:CDS | 65.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | + | chr4_2:7402099-7402118 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 7399841 | 7402328 | 7399841 | ID=Msa0586300;Name=Msa0586300 |
| chr4_2 | mRNA | 7399841 | 7402328 | 7399841 | ID=Msa0586300-mRNA-1;Parent=Msa0586300;Name=Msa0586300-mRNA-1;_AED=0.54;_eAED=0.55;_QI=0|0|0|0.66|0.62|0.77|9|0|313 |
| chr4_2 | exon | 7402083 | 7402328 | 7402083 | ID=Msa0586300-mRNA-1:exon:1940;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7401651 | 7401737 | 7401651 | ID=Msa0586300-mRNA-1:exon:1939;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7401437 | 7401570 | 7401437 | ID=Msa0586300-mRNA-1:exon:1938;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7401387 | 7401408 | 7401387 | ID=Msa0586300-mRNA-1:exon:1937;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7401275 | 7401366 | 7401275 | ID=Msa0586300-mRNA-1:exon:1936;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7400660 | 7400791 | 7400660 | ID=Msa0586300-mRNA-1:exon:1935;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7400399 | 7400498 | 7400399 | ID=Msa0586300-mRNA-1:exon:1934;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7399999 | 7400067 | 7399999 | ID=Msa0586300-mRNA-1:exon:1933;Parent=Msa0586300-mRNA-1 |
| chr4_2 | exon | 7399841 | 7399900 | 7399841 | ID=Msa0586300-mRNA-1:exon:1932;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7402083 | 7402328 | 7402083 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7401651 | 7401737 | 7401651 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7401437 | 7401570 | 7401437 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7401387 | 7401408 | 7401387 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7401275 | 7401366 | 7401275 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7400660 | 7400791 | 7400660 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7400399 | 7400498 | 7400399 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7399999 | 7400067 | 7399999 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| chr4_2 | CDS | 7399841 | 7399900 | 7399841 | ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
