AlfalfaGEDB | Msa0586300

M. sativa cultivar zhongmu-4 / Msa0586300

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586300	XP_004507018.1	72.086	326	36	6	2	313	14	298	1.42e-152	439

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586300	sp\|Q8H1G0\|GAT28_ARATH	50.926	324	100	7	3	310	15	295	2.84e-95	287

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0586300	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0543500	Msa0586300	0.814040	1.886059e-51	-8.615850e-47
Msa0586300	Msa0626330	0.854721	1.018998e-61	-8.615850e-47
Msa0586300	Msa0664410	0.856449	3.193918e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586300	MtrunA17_Chr3g0132761	42.045	264	87	5	60	312	57	265	5.71e-49	165
Msa0586300	MtrunA17_Chr5g0427661	39.145	304	90	11	29	287	22	275	8.04e-47	159
Msa0586300	MtrunA17_Chr4g0002231	59.091	132	14	2	142	271	42	135	3.99e-44	147
Msa0586300	MtrunA17_Chr3g0132751	41.475	217	75	3	74	279	69	244	1.28e-43	153
Msa0586300	MtrunA17_Chr4g0049741	39.744	234	84	5	72	291	41	231	2.18e-40	144
Msa0586300	MtrunA17_Chr4g0002261	59.615	104	3	2	102	204	1	66	1.97e-28	104
Msa0586300	MtrunA17_Chr4g0002251	75.806	62	7	1	237	298	9	62	8.09e-25	95.5
Msa0586300	MtrunA17_Chr3g0102511	41.176	85	45	1	195	279	11	90	4.67e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586300	AT1G51600.1	50.926	324	100	7	3	310	15	295	2.88e-96	287
Msa0586300	AT1G51600.2	50.926	324	100	7	3	310	15	295	2.88e-96	287
Msa0586300	AT3G21175.2	50.316	316	95	7	5	305	17	285	5.61e-89	268
Msa0586300	AT3G21175.1	50.000	318	95	8	5	305	17	287	5.39e-87	263
Msa0586300	AT3G21175.3	44.898	245	79	3	5	238	17	216	1.97e-56	182
Msa0586300	AT4G24470.3	39.914	233	84	5	59	279	68	256	4.19e-44	153
Msa0586300	AT4G24470.1	39.914	233	84	5	59	279	68	256	5.38e-44	153
Msa0586300	AT4G24470.2	39.914	233	84	5	59	279	68	256	5.38e-44	153

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Find 89 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTGGAACACAGGACA+TGG	0.585214	4_2:-7401293	Msa0586300:CDS
AAATGTAAAGGTCTGTCATG+AGG	0.563085	4_2:+7399826	None:intergenic
AAGTCCACAAGCATTGCAGA+GGG	0.674174	4_2:+7400414	None:intergenic
AATGTAAAGGTCTGTCATGA+GGG	0.575457	4_2:+7399827	None:intergenic
ACACTTTAATAATGGATCAA+GGG	0.566567	4_2:-7402125	Msa0586300:CDS
ACCTTCCATGCCAATTTCTC+CGG	0.421602	4_2:-7401665	Msa0586300:CDS
AGAAATTGGCATGGAAGGTA+AGG	0.522598	4_2:+7401669	None:intergenic
AGAACCCTCTGCAATGCTTG+TGG	0.537519	4_2:-7400418	Msa0586300:CDS
AGAAGTGCACGCCAATGATG+CGG	0.629029	4_2:-7400459	Msa0586300:CDS
AGACTCATCCGGATTGGACT+TGG	0.463085	4_2:+7400737	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCATATGGCATATGTAT+AGG	+	chr4_2:7399862-7399881	None:intergenic	30.0%
ATGGATGACGATCAAAATAA+CGG	-	chr4_2:7399916-7399935	Msa0586300:intron	30.0%
ATCCATTGTTAATCCTGTTA+TGG	-	chr4_2:7400344-7400363	Msa0586300:intron	30.0%
TCAATCTGTACTACTGTTAT+TGG	-	chr4_2:7400434-7400453	Msa0586300:CDS	30.0%
CAATCTGTACTACTGTTATT+GGG	-	chr4_2:7400435-7400454	Msa0586300:CDS	30.0%
GTATTACTACATTACTTGGT+TGG	-	chr4_2:7400519-7400538	Msa0586300:intron	30.0%
TGATTAGATTTCGTGAAAAG+CGG	-	chr4_2:7400651-7400670	Msa0586300:intron	30.0%
TTCGTAAAGAAGTAGCATTA+AGG	-	chr4_2:7400711-7400730	Msa0586300:CDS	30.0%
AAAGAAGTAGCATTAAGGTA+TGG	-	chr4_2:7400716-7400735	Msa0586300:CDS	30.0%
ATTATCATACATACGGTGTT+AGG	+	chr4_2:7401171-7401190	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	7399841	7402328	7399841	ID=Msa0586300;Name=Msa0586300
chr4_2	mRNA	7399841	7402328	7399841	ID=Msa0586300-mRNA-1;Parent=Msa0586300;Name=Msa0586300-mRNA-1;_AED=0.54;_eAED=0.55;_QI=0\|0\|0\|0.66\|0.62\|0.77\|9\|0\|313
chr4_2	exon	7402083	7402328	7402083	ID=Msa0586300-mRNA-1:exon:1940;Parent=Msa0586300-mRNA-1
chr4_2	exon	7401651	7401737	7401651	ID=Msa0586300-mRNA-1:exon:1939;Parent=Msa0586300-mRNA-1
chr4_2	exon	7401437	7401570	7401437	ID=Msa0586300-mRNA-1:exon:1938;Parent=Msa0586300-mRNA-1
chr4_2	exon	7401387	7401408	7401387	ID=Msa0586300-mRNA-1:exon:1937;Parent=Msa0586300-mRNA-1
chr4_2	exon	7401275	7401366	7401275	ID=Msa0586300-mRNA-1:exon:1936;Parent=Msa0586300-mRNA-1
chr4_2	exon	7400660	7400791	7400660	ID=Msa0586300-mRNA-1:exon:1935;Parent=Msa0586300-mRNA-1
chr4_2	exon	7400399	7400498	7400399	ID=Msa0586300-mRNA-1:exon:1934;Parent=Msa0586300-mRNA-1
chr4_2	exon	7399999	7400067	7399999	ID=Msa0586300-mRNA-1:exon:1933;Parent=Msa0586300-mRNA-1
chr4_2	exon	7399841	7399900	7399841	ID=Msa0586300-mRNA-1:exon:1932;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7402083	7402328	7402083	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7401651	7401737	7401651	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7401437	7401570	7401437	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7401387	7401408	7401387	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7401275	7401366	7401275	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7400660	7400791	7400660	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7400399	7400498	7400399	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7399999	7400067	7399999	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1
chr4_2	CDS	7399841	7399900	7399841	ID=Msa0586300-mRNA-1:cds;Parent=Msa0586300-mRNA-1

Gene Sequence

>Msa0586300

ACCAGTGATGAACAACATCCTATACATATGCCATATGAACATCACGGGTTGCACCATATGAGCGATGGGAATGAGATGGATGACGATCAAAATAACGGCGGTGGCGGTGATTCTAACTGCGGAGGAAGTGAGCGTGCGGAAGGTGAAATCCACTCCAACAATGGAAATCTTCATGACAATCACACTTTAATAATGGATCAAGGGAATGATATTGGAGATCAGCTTACTTTGTCTTTTCAGGGACAAGTTCAATCTGTACTACTGTTATTGGGAGGGCGTGAAGTACCTCCAACCTTACCTTCCATGCCAATTTCTCCGGAGGAAAATAACCAGGCATTTATTGGTACACCAGAAAAATTCAGCGTCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCATTAAGATTGAACTTGCTTGGAATATTTTTCACTGTTTTGAATTATATTCGTAAATGCTTTTCGTTACCGATACCAGTGAAAGGGTGGAACACAGGACATGGTGGCAAGTTCCTTGATAAGATGCAAAGAAATAAAGGCCAATTCACATCTGCCAAGTCCAATCCGGATGAGTCTGCATCAGCTGAAATAAATTGCGGAACAAGTGAAGGTTTGACGGCAGACAATAATGGATCCCAACAGCAAGATACTGTGCATTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCGCTTAGGGACCTATCAAGGGCAGCAACCTTGCCGGCACATAATTCTCCATTAAACAAGAATGAGAATAATAATAATTTGGAGGCCAATCAGACAGTGCTTAGAGATGCTGCTGAACCCTCATGA

Protein sequence

>Msa0586300

TSDEQHPIHMPYEHHGLHHMSDGNEMDDDQNNGGGGDSNCGGSERAEGEIHSNNGNLHDNHTLIMDQGNDIGDQLTLSFQGQVQSVLLLLGGREVPPTLPSMPISPEENNQAFIGTPEKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRLNLLGIFFTVLNYIRKCFSLPIPVKGWNTGHGGKFLDKMQRNKGQFTSAKSNPDESASAEINCGTSEGLTADNNGSQQQDTVHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRAATLPAHNSPLNKNENNNNLEANQTVLRDAAEPS*