Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626330 | XP_004507018.1 | 72.340 | 329 | 36 | 6 | 1 | 315 | 11 | 298 | 2.05e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626330 | sp|Q8H1G0|GAT28_ARATH | 51.220 | 328 | 101 | 7 | 1 | 312 | 11 | 295 | 2.03e-97 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626330 | A0A1S2YMG4 | 72.340 | 329 | 36 | 6 | 1 | 315 | 11 | 298 | 9.78e-155 | 444 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0626330 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626330 | Msa0664410 | 0.824247 | 8.948992e-54 | -8.615850e-47 |
| Msa0543490 | Msa0626330 | 0.804797 | 1.817832e-49 | -8.615850e-47 |
| Msa0543500 | Msa0626330 | 0.827720 | 1.338619e-54 | -8.615850e-47 |
| Msa0586300 | Msa0626330 | 0.854721 | 1.018998e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626330 | MtrunA17_Chr3g0132761 | 42.045 | 264 | 87 | 5 | 62 | 314 | 57 | 265 | 8.70e-49 | 165 |
| Msa0626330 | MtrunA17_Chr5g0427661 | 39.145 | 304 | 90 | 11 | 31 | 289 | 22 | 275 | 7.72e-47 | 159 |
| Msa0626330 | MtrunA17_Chr3g0132751 | 41.935 | 217 | 74 | 3 | 76 | 281 | 69 | 244 | 2.97e-44 | 154 |
| Msa0626330 | MtrunA17_Chr4g0002231 | 59.091 | 132 | 14 | 2 | 144 | 273 | 42 | 135 | 4.21e-44 | 147 |
| Msa0626330 | MtrunA17_Chr4g0049741 | 39.744 | 234 | 84 | 5 | 74 | 293 | 41 | 231 | 1.20e-40 | 144 |
| Msa0626330 | MtrunA17_Chr4g0002261 | 60.577 | 104 | 2 | 2 | 104 | 206 | 1 | 66 | 3.09e-29 | 106 |
| Msa0626330 | MtrunA17_Chr4g0002251 | 75.806 | 62 | 7 | 1 | 239 | 300 | 9 | 62 | 9.30e-25 | 95.1 |
| Msa0626330 | MtrunA17_Chr3g0102511 | 41.176 | 85 | 45 | 1 | 197 | 281 | 11 | 90 | 4.82e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626330 | AT1G51600.1 | 51.220 | 328 | 101 | 7 | 1 | 312 | 11 | 295 | 2.07e-98 | 292 |
| Msa0626330 | AT1G51600.2 | 51.220 | 328 | 101 | 7 | 1 | 312 | 11 | 295 | 2.07e-98 | 292 |
| Msa0626330 | AT3G21175.2 | 50.621 | 322 | 97 | 7 | 1 | 307 | 11 | 285 | 1.39e-91 | 275 |
| Msa0626330 | AT3G21175.1 | 50.309 | 324 | 97 | 8 | 1 | 307 | 11 | 287 | 1.16e-89 | 270 |
| Msa0626330 | AT3G21175.3 | 45.418 | 251 | 81 | 3 | 1 | 240 | 11 | 216 | 5.28e-59 | 189 |
| Msa0626330 | AT4G24470.3 | 39.914 | 233 | 84 | 5 | 61 | 281 | 68 | 256 | 6.42e-44 | 153 |
| Msa0626330 | AT4G24470.1 | 39.914 | 233 | 84 | 5 | 61 | 281 | 68 | 256 | 8.88e-44 | 152 |
| Msa0626330 | AT4G24470.2 | 39.914 | 233 | 84 | 5 | 61 | 281 | 68 | 256 | 8.88e-44 | 152 |
Find 89 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTCATTCTTGTTTAA+TGG | 0.137752 | 4_3:+5773204 | None:intergenic |
| TCAATCTGTACTACTGTTAT+TGG | 0.235229 | 4_3:-5774923 | Msa0626330:CDS |
| TGGACTTATGTGGGCAAATA+AGG | 0.243603 | 4_3:-5773608 | Msa0626330:intron |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_3:+5773640 | None:intergenic |
| TCAGAATAATAATAATTTAG+AGG | 0.279716 | 4_3:-5773092 | Msa0626330:intron |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_3:+5773631 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.321682 | 4_3:-5773984 | Msa0626330:intron |
| TGACAATCACACTTTAATAA+TGG | 0.323443 | 4_3:-5775343 | Msa0626330:CDS |
| TCTCATTCCCATTGCTCATA+TGG | 0.350967 | 4_3:+5775463 | None:intergenic |
| ATGGATCAAGGGAATGATAT+TGG | 0.357672 | 4_3:-5775324 | Msa0626330:CDS |
| CAATCTGTACTACTGTTATT+GGG | 0.360369 | 4_3:-5774922 | Msa0626330:CDS |
| ATCAAGGGCAGCAACCTTGC+CGG | 0.382086 | 4_3:-5773238 | Msa0626330:CDS |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_3:+5773658 | None:intergenic |
| GCAAGGTTGCTGCCCTTGAT+AGG | 0.404698 | 4_3:+5773241 | None:intergenic |
| GTCATGAAGATTTCCATTGT+TGG | 0.406240 | 4_3:+5775362 | None:intergenic |
| ATCTCTAAGCACTGTCTGAT+TGG | 0.416220 | 4_3:+5773069 | None:intergenic |
| ACCTTCCATGCCAATTTCTC+CGG | 0.421602 | 4_3:-5774875 | Msa0626330:CDS |
| TGAACCACAGGGAGCGCTTA+GGG | 0.440040 | 4_3:-5773265 | Msa0626330:intron |
| TGGACTTGGCAGATGTGAAT+TGG | 0.440859 | 4_3:+5773961 | None:intergenic |
| ATTGGCATGGAAGGTAAGGT+TGG | 0.459291 | 4_3:+5774883 | None:intergenic |
| CACACTTTAATAATGGATCA+AGG | 0.459438 | 4_3:-5775336 | Msa0626330:CDS |
| CCTGTGTTCCACCCTTTCAC+TGG | 0.460574 | 4_3:+5774509 | None:intergenic |
| AGACTCATCCGGATTGGACT+TGG | 0.463085 | 4_3:+5773947 | None:intergenic |
| GAGCGCTTAGGGACCTATCA+AGG | 0.466145 | 4_3:-5773254 | Msa0626330:CDS |
| TTGAACCACAGGGAGCGCTT+AGG | 0.472073 | 4_3:-5773266 | Msa0626330:intron |
| TCAGCTGATGCAGACTCATC+CGG | 0.472877 | 4_3:+5773936 | None:intergenic |
| TTACACAGTATCTTGCTGTT+GGG | 0.474472 | 4_3:+5773866 | None:intergenic |
| TTCCACCCTTTCACTGGTAT+CGG | 0.480598 | 4_3:+5774515 | None:intergenic |
| CACATCTGCCAAGTCCAATC+CGG | 0.483186 | 4_3:-5773955 | Msa0626330:CDS |
| TTCGTAAAGAAGTAGCATTA+AGG | 0.488066 | 4_3:-5774646 | Msa0626330:intron |
| CGGAACAAGTGAAGGTTTGA+CGG | 0.488246 | 4_3:-5773904 | Msa0626330:CDS |
| GCAATGCTTGTGGACTTATG+TGG | 0.493003 | 4_3:-5773618 | Msa0626330:CDS |
| CTTACACAGTATCTTGCTGT+TGG | 0.493662 | 4_3:+5773865 | None:intergenic |
| GGTTTGACGGCAGACAATAA+TGG | 0.494804 | 4_3:-5773891 | Msa0626330:CDS |
| CGTTACCGATACCAGTGAAA+GGG | 0.513718 | 4_3:-5774520 | Msa0626330:CDS |
| GGTTGCACCATATGAGCAAT+GGG | 0.518379 | 4_3:-5775470 | Msa0626330:CDS |
| TGTTCATATGGCATATGTAT+AGG | 0.519920 | 4_3:+5775498 | None:intergenic |
| GATCAAAATAACGGCGGTGG+CGG | 0.521917 | 4_3:-5775432 | Msa0626330:CDS |
| AGAAATTGGCATGGAAGGTA+AGG | 0.522598 | 4_3:+5774879 | None:intergenic |
| GAAGATTTCCATTGTTGGAG+TGG | 0.525496 | 4_3:+5775367 | None:intergenic |
| TATAGGATGCTGTTCATCAC+TGG | 0.526791 | 4_3:+5775515 | None:intergenic |
| GGTGAAATCCACTCCAACAA+TGG | 0.530034 | 4_3:-5775375 | Msa0626330:CDS |
| TTCTCCATTAAACAAGAATG+AGG | 0.532237 | 4_3:-5773208 | Msa0626330:intron |
| TGCAACCCGTGATGTTCATA+TGG | 0.534256 | 4_3:+5775486 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_3:-5773655 | Msa0626330:CDS |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_3:-5773628 | Msa0626330:CDS |
| ATAAATTGCGGAACAAGTGA+AGG | 0.554129 | 4_3:-5773912 | Msa0626330:CDS |
| TCCGGAGAAATTGGCATGGA+AGG | 0.555042 | 4_3:+5774874 | None:intergenic |
| TGATGCAGACTCATCCGGAT+TGG | 0.558123 | 4_3:+5773941 | None:intergenic |
| AAATGTAAAGGTCTGTCATG+AGG | 0.563085 | 4_3:+5773036 | None:intergenic |
| ACACTTTAATAATGGATCAA+GGG | 0.566567 | 4_3:-5775335 | Msa0626330:CDS |
| TCAATGAAGCTAATCTCTGA+GGG | 0.569675 | 4_3:+5774726 | None:intergenic |
| TGGAGAATTATGTGCCGGCA+AGG | 0.571633 | 4_3:+5773224 | None:intergenic |
| GGGTTGCACCATATGAGCAA+TGG | 0.573516 | 4_3:-5775471 | Msa0626330:CDS |
| GGCATGGAAGGTAAGGTTGG+AGG | 0.573711 | 4_3:+5774886 | None:intergenic |
| GACGATCAAAATAACGGCGG+TGG | 0.573965 | 4_3:-5775435 | Msa0626330:CDS |
| AATGTAAAGGTCTGTCATGA+GGG | 0.575457 | 4_3:+5773037 | None:intergenic |
| TCGTTACCGATACCAGTGAA+AGG | 0.576427 | 4_3:-5774521 | Msa0626330:CDS |
| GGAGGAAGTGAGCGTGCGGA+AGG | 0.580150 | 4_3:-5775396 | Msa0626330:CDS |
| CAATGCTTGTGGACTTATGT+GGG | 0.580586 | 4_3:-5773617 | Msa0626330:CDS |
| TTTAATGGAGAATTATGTGC+CGG | 0.581798 | 4_3:+5773219 | None:intergenic |
| TAGATTTCGTGAAAAGCGGA+AGG | 0.584600 | 4_3:-5774702 | Msa0626330:CDS |
| TTCCATGCCAATTTCTCCGG+AGG | 0.584851 | 4_3:-5774872 | Msa0626330:CDS |
| AAAGGGTGGAACACAGGACA+TGG | 0.585214 | 4_3:-5774503 | Msa0626330:CDS |
| ATATGCCATATGAACATCAC+GGG | 0.590381 | 4_3:-5775491 | Msa0626330:CDS |
| TGATTAGATTTCGTGAAAAG+CGG | 0.593015 | 4_3:-5774706 | Msa0626330:CDS |
| ATCAATGAAGCTAATCTCTG+AGG | 0.598501 | 4_3:+5774725 | None:intergenic |
| ATGGATGACGATCAAAATAA+CGG | 0.601177 | 4_3:-5775441 | Msa0626330:CDS |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_3:-5773654 | Msa0626330:CDS |
| CCAGTGAAAGGGTGGAACAC+AGG | 0.603935 | 4_3:-5774509 | Msa0626330:CDS |
| CTGTACTACTGTTATTGGGA+GGG | 0.609779 | 4_3:-5774918 | Msa0626330:CDS |
| TTCTCCGGAGGAAAATAACC+AGG | 0.618970 | 4_3:-5774860 | Msa0626330:intron |
| TACCGATACCAGTGAAAGGG+TGG | 0.622723 | 4_3:-5774517 | Msa0626330:CDS |
| AGCGCTTAGGGACCTATCAA+GGG | 0.623206 | 4_3:-5773253 | Msa0626330:CDS |
| GGCGGTGATTCTAACTGCGG+AGG | 0.624259 | 4_3:-5775414 | Msa0626330:CDS |
| CATATGCCATATGAACATCA+CGG | 0.625092 | 4_3:-5775492 | Msa0626330:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_3:-5773669 | Msa0626330:CDS |
| TCTGTACTACTGTTATTGGG+AGG | 0.631795 | 4_3:-5774919 | Msa0626330:CDS |
| TATGAGCAATGGGAATGAGA+TGG | 0.632606 | 4_3:-5775460 | Msa0626330:CDS |
| CATGTCAGTTGTAGGCATTG+TGG | 0.641895 | 4_3:-5773700 | Msa0626330:intron |
| GCATCAGCTGAAATAAATTG+CGG | 0.642078 | 4_3:-5773924 | Msa0626330:CDS |
| TTCCTCCGGAGAAATTGGCA+TGG | 0.644718 | 4_3:+5774870 | None:intergenic |
| CTGCGGAGGAAGTGAGCGTG+CGG | 0.653770 | 4_3:-5775400 | Msa0626330:CDS |
| TAAGTCCACAAGCATTGCAG+AGG | 0.655536 | 4_3:+5773623 | None:intergenic |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_3:-5773664 | Msa0626330:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.674174 | 4_3:+5773624 | None:intergenic |
| GGGTGGAACACAGGACATGG+TGG | 0.695925 | 4_3:-5774500 | Msa0626330:CDS |
| GGTGGCGGTGATTCTAACTG+CGG | 0.698443 | 4_3:-5775417 | Msa0626330:CDS |
| GATGACGATCAAAATAACGG+CGG | 0.778224 | 4_3:-5775438 | Msa0626330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTTATAATAATCTT+AGG | - | chr4_3:5774309-5774328 | Msa0626330:intron | 10.0% |
| !! | TAAAAATTGTAATAAGAAAA+TGG | - | chr4_3:5774982-5775001 | Msa0626330:intron | 10.0% |
| !!! | ATTATTATTATTCTGAAAAT+AGG | + | chr4_3:5776173-5776192 | None:intergenic | 10.0% |
| !!! | TTCATTTTAAATTTCTAACA+AGG | - | chr4_3:5774102-5774121 | Msa0626330:intron | 15.0% |
| !!! | ATATTATTTTAGACTTATCA+AGG | + | chr4_3:5774801-5774820 | None:intergenic | 15.0% |
| !!! | TTTTCAAAATTTCTGAAAAA+TGG | - | chr4_3:5774947-5774966 | Msa0626330:intron | 15.0% |
| !! | GTATTCTATTCTATATATTA+TGG | - | chr4_3:5775471-5775490 | Msa0626330:CDS | 15.0% |
| !! | AAACGAATAAATTAAAAAGA+AGG | + | chr4_3:5775968-5775987 | None:intergenic | 15.0% |
| !! | TCAGAATAATAATAATTTAG+AGG | - | chr4_3:5776177-5776196 | Msa0626330:intron | 15.0% |
| !! | TGGTTATAAATCAATTACTA+TGG | + | chr4_3:5773515-5773534 | None:intergenic | 20.0% |
| !! | CTATCTATGATAAAATAAGA+GGG | + | chr4_3:5774175-5774194 | None:intergenic | 20.0% |
| !! | ACTATCTATGATAAAATAAG+AGG | + | chr4_3:5774176-5774195 | None:intergenic | 20.0% |
| !!! | ACATTTTATTAGGGATTTAT+TGG | - | chr4_3:5774499-5774518 | Msa0626330:CDS | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | + | chr4_3:5775738-5775757 | None:intergenic | 20.0% |
| ! | ATGATACTTTACCTGTTAAT+TGG | - | chr4_3:5773343-5773362 | Msa0626330:intron | 25.0% |
| ! | CTACACATACAATAAGAAAA+AGG | + | chr4_3:5773379-5773398 | None:intergenic | 25.0% |
| ! | TTCTTATTGTATGTGTAGTT+TGG | - | chr4_3:5773381-5773400 | Msa0626330:intron | 25.0% |
| !!! | ATATCTGTTTCTGATATGTT+CGG | - | chr4_3:5773561-5773580 | Msa0626330:intron | 25.0% |
| !!! | CTTTTGTTGTTGATTTTCTT+TGG | - | chr4_3:5773639-5773658 | Msa0626330:CDS | 25.0% |
| ! | AGTGACATAAAGATTGTTAA+TGG | + | chr4_3:5773668-5773687 | None:intergenic | 25.0% |
| !! | AATCTTTATGTCACTTCTTT+AGG | - | chr4_3:5773673-5773692 | Msa0626330:CDS | 25.0% |
| ! | TGACAATCACACTTTAATAA+TGG | - | chr4_3:5773926-5773945 | Msa0626330:CDS | 25.0% |
| !!! | ACACTTTAATAATGGATCAA+GGG | - | chr4_3:5773934-5773953 | Msa0626330:CDS | 25.0% |
| !!! | ATTTTTAGATTGAACTTGCT+TGG | - | chr4_3:5774665-5774684 | Msa0626330:CDS | 25.0% |
| ! | AATTTGAGCACTATATTATG+AGG | + | chr4_3:5774844-5774863 | None:intergenic | 25.0% |
| ! | CCATTTCAACTAATAATCAT+AGG | + | chr4_3:5775034-5775053 | None:intergenic | 25.0% |
| ! | CCTATGATTATTAGTTGAAA+TGG | - | chr4_3:5775031-5775050 | Msa0626330:intron | 25.0% |
| ! | ATATAGCAAAATAACAACGT+CGG | + | chr4_3:5775232-5775251 | None:intergenic | 25.0% |
| ! | CAAATACGAAAAACTTCTTT+AGG | - | chr4_3:5775268-5775287 | Msa0626330:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_3:5775285-5775304 | Msa0626330:intron | 25.0% |
| ! | AATAAGGTAAATGGTAACTA+TGG | - | chr4_3:5775677-5775696 | Msa0626330:intron | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | + | chr4_3:5775822-5775841 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | - | chr4_3:5775993-5776012 | Msa0626330:intron | 25.0% |
| AGTATCATAACGAAGGTAAA+TGG | + | chr4_3:5773166-5773185 | None:intergenic | 30.0% | |
| TCATCATAGTATCATAACGA+AGG | + | chr4_3:5773173-5773192 | None:intergenic | 30.0% | |
| ! | GCATTGATATACCAATTAAC+AGG | + | chr4_3:5773357-5773376 | None:intergenic | 30.0% |
| TTCTTATTGTATGTGTAGCT+TGG | - | chr4_3:5773465-5773484 | Msa0626330:intron | 30.0% | |
| GATTTATAACCAATGAAGCA+TGG | - | chr4_3:5773523-5773542 | Msa0626330:intron | 30.0% | |
| ! | GTCACTTCTTTAGGTAATTT+TGG | - | chr4_3:5773682-5773701 | Msa0626330:CDS | 30.0% |
| TGTTCATATGGCATATGTAT+AGG | + | chr4_3:5773774-5773793 | None:intergenic | 30.0% | |
| ATGGATGACGATCAAAATAA+CGG | - | chr4_3:5773828-5773847 | Msa0626330:intron | 30.0% | |
| !! | CACACTTTAATAATGGATCA+AGG | - | chr4_3:5773933-5773952 | Msa0626330:CDS | 30.0% |
| !!! | ATAAGTTGATGAACCTTTTC+TGG | + | chr4_3:5774026-5774045 | None:intergenic | 30.0% |
| ATCCATTGTTAATCCTGTTA+TGG | - | chr4_3:5774256-5774275 | Msa0626330:intron | 30.0% | |
| TCAATCTGTACTACTGTTAT+TGG | - | chr4_3:5774346-5774365 | Msa0626330:intron | 30.0% | |
| CAATCTGTACTACTGTTATT+GGG | - | chr4_3:5774347-5774366 | Msa0626330:intron | 30.0% | |
| GTATTACTACATTACTTGGT+TGG | - | chr4_3:5774431-5774450 | Msa0626330:intron | 30.0% | |
| ! | GCTCACGAAACATTTTATTA+GGG | - | chr4_3:5774490-5774509 | Msa0626330:CDS | 30.0% |
| TGATTAGATTTCGTGAAAAG+CGG | - | chr4_3:5774563-5774582 | Msa0626330:intron | 30.0% | |
| TTCGTAAAGAAGTAGCATTA+AGG | - | chr4_3:5774623-5774642 | Msa0626330:intron | 30.0% | |
| AAAGAAGTAGCATTAAGGTA+TGG | - | chr4_3:5774628-5774647 | Msa0626330:intron | 30.0% | |
| ATTATCATACATACGGTGTT+AGG | + | chr4_3:5775083-5775102 | None:intergenic | 30.0% | |
| CCAGAAGATTATCATACATA+CGG | + | chr4_3:5775090-5775109 | None:intergenic | 30.0% | |
| !!! | TGGCTCATTTTTTAACAAGT+GGG | - | chr4_3:5775432-5775451 | Msa0626330:CDS | 30.0% |
| !! | ATATATTATGGTTGACTCGA+TGG | - | chr4_3:5775483-5775502 | Msa0626330:CDS | 30.0% |
| AATTTCAACCTACACTGAAA+TGG | - | chr4_3:5775532-5775551 | Msa0626330:intron | 30.0% | |
| AAAAGATAGCAATTGACATG+AGG | + | chr4_3:5775708-5775727 | None:intergenic | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | - | chr4_3:5775765-5775784 | Msa0626330:intron | 30.0% | |
| !! | GGACCTTTTCGATTATTTTT+CGG | + | chr4_3:5775771-5775790 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | + | chr4_3:5775891-5775910 | None:intergenic | 30.0% |
| CATTCAACTTGATTCAGATT+TGG | - | chr4_3:5775889-5775908 | Msa0626330:intron | 30.0% | |
| !!! | ATTTGGCTTTTATACTCGAA+TGG | - | chr4_3:5775906-5775925 | Msa0626330:intron | 30.0% |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | - | chr4_3:5775992-5776011 | Msa0626330:intron | 30.0% |
| TTTAATGGAGAATTATGTGC+CGG | + | chr4_3:5776053-5776072 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | - | chr4_3:5776061-5776080 | Msa0626330:intron | 30.0% | |
| ! | TCAACCTCATTCTTGTTTAA+TGG | + | chr4_3:5776068-5776087 | None:intergenic | 30.0% |
| ! | ACTATGATGAAGCACTAACA+TGG | - | chr4_3:5773183-5773202 | Msa0626330:intron | 35.0% |
| TTGAATGTAATCGCATGTGT+CGG | - | chr4_3:5773237-5773256 | Msa0626330:CDS | 35.0% | |
| TTCCAATGTTTCAACAGTGT+CGG | + | chr4_3:5773272-5773291 | None:intergenic | 35.0% | |
| ACTGTTGAAACATTGGAACA+CGG | - | chr4_3:5773274-5773293 | Msa0626330:intron | 35.0% | |
| ATGACAACACTTATGGTAGA+AGG | + | chr4_3:5773305-5773324 | None:intergenic | 35.0% | |
| ACTGACAATGACAACACTTA+TGG | + | chr4_3:5773312-5773331 | None:intergenic | 35.0% | |
| CATATGCCATATGAACATCA+CGG | - | chr4_3:5773777-5773796 | Msa0626330:intron | 35.0% | |
| ATATGCCATATGAACATCAC+GGG | - | chr4_3:5773778-5773797 | Msa0626330:intron | 35.0% | |
| GTCATGAAGATTTCCATTGT+TGG | + | chr4_3:5773910-5773929 | None:intergenic | 35.0% | |
| ATGGATCAAGGGAATGATAT+TGG | - | chr4_3:5773945-5773964 | Msa0626330:CDS | 35.0% | |
| ! | TCAGCTTACTTTGTCTTTTC+AGG | - | chr4_3:5773971-5773990 | Msa0626330:CDS | 35.0% |
| ! | CAGCTTACTTTGTCTTTTCA+GGG | - | chr4_3:5773972-5773991 | Msa0626330:CDS | 35.0% |
| AAATTATAACACACGCCTCA+AGG | + | chr4_3:5774214-5774233 | None:intergenic | 35.0% | |
| GTCCATAACAGGATTAACAA+TGG | + | chr4_3:5774261-5774280 | None:intergenic | 35.0% | |
| TAAAATCAAACCCTATGCAG+GGG | + | chr4_3:5774287-5774306 | None:intergenic | 35.0% | |
| CTAAAATCAAACCCTATGCA+GGG | + | chr4_3:5774288-5774307 | None:intergenic | 35.0% | |
| ! | TCTAAAATCAAACCCTATGC+AGG | + | chr4_3:5774289-5774308 | None:intergenic | 35.0% |
| !! | TAATCTTAGGTGTCATTGCT+AGG | - | chr4_3:5774322-5774341 | Msa0626330:intron | 35.0% |
| ! | TTATTTTCCTCCGGAGAAAT+TGG | + | chr4_3:5774407-5774426 | None:intergenic | 35.0% |
| !! | AATACCTGGTTATTTTCCTC+CGG | + | chr4_3:5774416-5774435 | None:intergenic | 35.0% |
| CCAAGTAATGTAGTAATACC+TGG | + | chr4_3:5774430-5774449 | None:intergenic | 35.0% | |
| CCAGGTATTACTACATTACT+TGG | - | chr4_3:5774427-5774446 | Msa0626330:intron | 35.0% | |
| ! | GGCTCACGAAACATTTTATT+AGG | - | chr4_3:5774489-5774508 | Msa0626330:CDS | 35.0% |
| TCAATGAAGCTAATCTCTGA+GGG | + | chr4_3:5774546-5774565 | None:intergenic | 35.0% | |
| ATCAATGAAGCTAATCTCTG+AGG | + | chr4_3:5774547-5774566 | None:intergenic | 35.0% | |
| CGAAATCCATAATTGATTGC+AGG | - | chr4_3:5774868-5774887 | Msa0626330:CDS | 35.0% | |
| AGTTTGCCTGCAATCAATTA+TGG | + | chr4_3:5774877-5774896 | None:intergenic | 35.0% | |
| CCGTATGTATGATAATCTTC+TGG | - | chr4_3:5775087-5775106 | Msa0626330:intron | 35.0% | |
| GCATCAGCTGAAATAAATTG+CGG | - | chr4_3:5775345-5775364 | Msa0626330:CDS | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | - | chr4_3:5775357-5775376 | Msa0626330:CDS | 35.0% | |
| !! | TTACACAGTATCTTGCTGTT+GGG | + | chr4_3:5775406-5775425 | None:intergenic | 35.0% |
| ! | AAGATACTGTGTAAGTTGAC+TGG | - | chr4_3:5775412-5775431 | Msa0626330:CDS | 35.0% |
| !!! | CTGGCTCATTTTTTAACAAG+TGG | - | chr4_3:5775431-5775450 | Msa0626330:CDS | 35.0% |
| AAGAAAGACCATTTCAGTGT+AGG | + | chr4_3:5775543-5775562 | None:intergenic | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | - | chr4_3:5775561-5775580 | Msa0626330:intron | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | - | chr4_3:5775668-5775687 | Msa0626330:intron | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | + | chr4_3:5775871-5775890 | None:intergenic | 35.0% | |
| !!! | AGGCACAGTTTTTTGTTGAA+AGG | + | chr4_3:5775948-5775967 | None:intergenic | 35.0% |
| GAAGATCTAAGTTCCTATGT+TGG | + | chr4_3:5776136-5776155 | None:intergenic | 35.0% | |
| TGTCAATGTCCATGCTTCAT+TGG | + | chr4_3:5773535-5773554 | None:intergenic | 40.0% | |
| !!! | ATTTTGGCTCTTCCAGTACA+TGG | - | chr4_3:5773698-5773717 | Msa0626330:intron | 40.0% |
| CATGAATACCATCCATGTAC+TGG | + | chr4_3:5773713-5773732 | None:intergenic | 40.0% | |
| CAGTACATGGATGGTATTCA+TGG | - | chr4_3:5773711-5773730 | Msa0626330:intron | 40.0% | |
| !! | GTATTCATGGTGTTGATTCG+CGG | - | chr4_3:5773724-5773743 | Msa0626330:intron | 40.0% |
| TATAGGATGCTGTTCATCAC+TGG | + | chr4_3:5773757-5773776 | None:intergenic | 40.0% | |
| TCTCATTCCCATTGCTCATA+TGG | + | chr4_3:5773809-5773828 | None:intergenic | 40.0% | |
| TATGAGCAATGGGAATGAGA+TGG | - | chr4_3:5773809-5773828 | Msa0626330:intron | 40.0% | |
| GATGACGATCAAAATAACGG+CGG | - | chr4_3:5773831-5773850 | Msa0626330:intron | 40.0% | |
| GAAGATTTCCATTGTTGGAG+TGG | + | chr4_3:5773905-5773924 | None:intergenic | 40.0% | |
| TCTGTACTACTGTTATTGGG+AGG | - | chr4_3:5774350-5774369 | Msa0626330:intron | 40.0% | |
| CTGTACTACTGTTATTGGGA+GGG | - | chr4_3:5774351-5774370 | Msa0626330:intron | 40.0% | |
| AGAAATTGGCATGGAAGGTA+AGG | + | chr4_3:5774393-5774412 | None:intergenic | 40.0% | |
| !! | TTCGATTGATAGCCTTTTGC+TGG | - | chr4_3:5774456-5774475 | Msa0626330:intron | 40.0% |
| CCAGATATTTGACCAGCAAA+AGG | + | chr4_3:5774471-5774490 | None:intergenic | 40.0% | |
| ! | CCTTTTGCTGGTCAAATATC+TGG | - | chr4_3:5774468-5774487 | Msa0626330:intron | 40.0% |
| TAGATTTCGTGAAAAGCGGA+AGG | - | chr4_3:5774567-5774586 | Msa0626330:intron | 40.0% | |
| !! | GTATGATAATCTTCTGGCTC+TGG | - | chr4_3:5775093-5775112 | Msa0626330:intron | 40.0% |
| ! | CTTACACAGTATCTTGCTGT+TGG | + | chr4_3:5775407-5775426 | None:intergenic | 40.0% |
| CAATGCTTGTGGACTTATGT+GGG | - | chr4_3:5775652-5775671 | Msa0626330:intron | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | - | chr4_3:5775661-5775680 | Msa0626330:intron | 40.0% | |
| GATGTTTCTCTTGCCAACAT+AGG | - | chr4_3:5776120-5776139 | Msa0626330:intron | 40.0% | |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | + | chr4_3:5776203-5776222 | None:intergenic | 40.0% |
| CACCGACACTGTTGAAACAT+TGG | - | chr4_3:5773267-5773286 | Msa0626330:intron | 45.0% | |
| TGCAACCCGTGATGTTCATA+TGG | + | chr4_3:5773786-5773805 | None:intergenic | 45.0% | |
| GGTTGCACCATATGAGCAAT+GGG | - | chr4_3:5773799-5773818 | Msa0626330:intron | 45.0% | |
| GGTGAAATCCACTCCAACAA+TGG | - | chr4_3:5773894-5773913 | Msa0626330:CDS | 45.0% | |
| ATGCAGTTTAACACGCCTTG+AGG | - | chr4_3:5774196-5774215 | Msa0626330:intron | 45.0% | |
| ! | TTATGGACTATCCCCTGCAT+AGG | - | chr4_3:5774273-5774292 | Msa0626330:intron | 45.0% |
| ! | TATGGACTATCCCCTGCATA+GGG | - | chr4_3:5774274-5774293 | Msa0626330:intron | 45.0% |
| ATTGGCATGGAAGGTAAGGT+TGG | + | chr4_3:5774389-5774408 | None:intergenic | 45.0% | |
| ACCTTCCATGCCAATTTCTC+CGG | - | chr4_3:5774394-5774413 | Msa0626330:intron | 45.0% | |
| TTCTCCGGAGGAAAATAACC+AGG | - | chr4_3:5774409-5774428 | Msa0626330:intron | 45.0% | |
| ! | TGAGGGACGCTGAATTTTTC+TGG | + | chr4_3:5774529-5774548 | None:intergenic | 45.0% |
| TCGTTACCGATACCAGTGAA+AGG | - | chr4_3:5774748-5774767 | Msa0626330:CDS | 45.0% | |
| CGTTACCGATACCAGTGAAA+GGG | - | chr4_3:5774749-5774768 | Msa0626330:CDS | 45.0% | |
| TTCCACCCTTTCACTGGTAT+CGG | + | chr4_3:5774757-5774776 | None:intergenic | 45.0% | |
| GTGTTAGGACAGAACTCCAT+TGG | + | chr4_3:5775068-5775087 | None:intergenic | 45.0% | |
| GTCGGTCATGATGTGGATTT+AGG | + | chr4_3:5775214-5775233 | None:intergenic | 45.0% | |
| TAACAACGTCGGTCATGATG+TGG | + | chr4_3:5775221-5775240 | None:intergenic | 45.0% | |
| TGGACTTGGCAGATGTGAAT+TGG | + | chr4_3:5775311-5775330 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | - | chr4_3:5775365-5775384 | Msa0626330:CDS | 45.0% | |
| GGTTTGACGGCAGACAATAA+TGG | - | chr4_3:5775378-5775397 | Msa0626330:CDS | 45.0% | |
| ! | CATGTCAGTTGTAGGCATTG+TGG | - | chr4_3:5775569-5775588 | Msa0626330:intron | 45.0% |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_3:5775648-5775667 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | + | chr4_3:5775649-5775668 | None:intergenic | 45.0% |
| GCAATGCTTGTGGACTTATG+TGG | - | chr4_3:5775651-5775670 | Msa0626330:intron | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | - | chr4_3:5775778-5775797 | Msa0626330:intron | 45.0% | |
| TAAACCACAGTCCACAGTCA+TGG | + | chr4_3:5775792-5775811 | None:intergenic | 45.0% | |
| TGGCTCTTCCAGTACATGGA+TGG | - | chr4_3:5773702-5773721 | Msa0626330:intron | 50.0% | |
| GGGTTGCACCATATGAGCAA+TGG | - | chr4_3:5773798-5773817 | Msa0626330:intron | 50.0% | |
| GACGATCAAAATAACGGCGG+TGG | - | chr4_3:5773834-5773853 | Msa0626330:intron | 50.0% | |
| GATCAAAATAACGGCGGTGG+CGG | - | chr4_3:5773837-5773856 | Msa0626330:intron | 50.0% | |
| TGACTCTGTGTCGCCAGAAA+AGG | - | chr4_3:5774010-5774029 | Msa0626330:intron | 50.0% | |
| TGCAGGGGATAGTCCATAAC+AGG | + | chr4_3:5774272-5774291 | None:intergenic | 50.0% | |
| TCCGGAGAAATTGGCATGGA+AGG | + | chr4_3:5774398-5774417 | None:intergenic | 50.0% | |
| TTCCATGCCAATTTCTCCGG+AGG | - | chr4_3:5774397-5774416 | Msa0626330:intron | 50.0% | |
| TTCCTCCGGAGAAATTGGCA+TGG | + | chr4_3:5774402-5774421 | None:intergenic | 50.0% | |
| TACCGATACCAGTGAAAGGG+TGG | - | chr4_3:5774752-5774771 | Msa0626330:CDS | 50.0% | |
| AAAGGGTGGAACACAGGACA+TGG | - | chr4_3:5774766-5774785 | Msa0626330:intron | 50.0% | |
| !! | AGAACTCCATTGGAGTGCTG+GGG | + | chr4_3:5775058-5775077 | None:intergenic | 50.0% |
| ! | CAGAACTCCATTGGAGTGCT+GGG | + | chr4_3:5775059-5775078 | None:intergenic | 50.0% |
| ACAGAACTCCATTGGAGTGC+TGG | + | chr4_3:5775060-5775079 | None:intergenic | 50.0% | |
| CACATCTGCCAAGTCCAATC+CGG | - | chr4_3:5775314-5775333 | Msa0626330:CDS | 50.0% | |
| ! | AGACTCATCCGGATTGGACT+TGG | + | chr4_3:5775325-5775344 | None:intergenic | 50.0% |
| TGATGCAGACTCATCCGGAT+TGG | + | chr4_3:5775331-5775350 | None:intergenic | 50.0% | |
| TCAGCTGATGCAGACTCATC+CGG | + | chr4_3:5775336-5775355 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_3:5775600-5775619 | Msa0626330:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_3:5775641-5775660 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_3:5775641-5775660 | Msa0626330:intron | 50.0% | |
| AGCGCTTAGGGACCTATCAA+GGG | - | chr4_3:5776016-5776035 | Msa0626330:intron | 50.0% | |
| ! | TGGAGAATTATGTGCCGGCA+AGG | + | chr4_3:5776048-5776067 | None:intergenic | 50.0% |
| ! | GGTGGCGGTGATTCTAACTG+CGG | - | chr4_3:5773852-5773871 | Msa0626330:intron | 55.0% |
| GGCATGGAAGGTAAGGTTGG+AGG | + | chr4_3:5774386-5774405 | None:intergenic | 55.0% | |
| CCTGTGTTCCACCCTTTCAC+TGG | + | chr4_3:5774763-5774782 | None:intergenic | 55.0% | |
| CCAGTGAAAGGGTGGAACAC+AGG | - | chr4_3:5774760-5774779 | Msa0626330:CDS | 55.0% | |
| AATGGACCCCAGCACTCCAA+TGG | - | chr4_3:5775049-5775068 | Msa0626330:intron | 55.0% | |
| ! | AGGTCCATGACTGTGGACTG+TGG | - | chr4_3:5775785-5775804 | Msa0626330:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | - | chr4_3:5776003-5776022 | Msa0626330:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | - | chr4_3:5776004-5776023 | Msa0626330:intron | 55.0% |
| GAGCGCTTAGGGACCTATCA+AGG | - | chr4_3:5776015-5776034 | Msa0626330:intron | 55.0% | |
| GCAAGGTTGCTGCCCTTGAT+AGG | + | chr4_3:5776031-5776050 | None:intergenic | 55.0% | |
| ATCAAGGGCAGCAACCTTGC+CGG | - | chr4_3:5776031-5776050 | Msa0626330:intron | 55.0% | |
| GGCGGTGATTCTAACTGCGG+AGG | - | chr4_3:5773855-5773874 | Msa0626330:intron | 60.0% | |
| GGGTGGAACACAGGACATGG+TGG | - | chr4_3:5774769-5774788 | Msa0626330:intron | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_3:5775614-5775633 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_3:5775614-5775633 | Msa0626330:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_3:5775615-5775634 | Msa0626330:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_3:5775632-5775651 | None:intergenic | 60.0% | |
| CTGCGGAGGAAGTGAGCGTG+CGG | - | chr4_3:5773869-5773888 | Msa0626330:intron | 65.0% | |
| GGAGGAAGTGAGCGTGCGGA+AGG | - | chr4_3:5773873-5773892 | Msa0626330:CDS | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_3:5775605-5775624 | Msa0626330:intron | 65.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | + | chr4_3:5776011-5776030 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5773051 | 5776240 | 5773051 | ID=Msa0626330;Name=Msa0626330 |
| chr4_3 | mRNA | 5773051 | 5776240 | 5773051 | ID=Msa0626330-mRNA-1;Parent=Msa0626330;Name=Msa0626330-mRNA-1;_AED=0.34;_eAED=0.37;_QI=0|0|0|0.6|0.44|0.7|10|0|315 |
| chr4_3 | exon | 5776235 | 5776240 | 5776235 | ID=Msa0626330-mRNA-1:exon:1651;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5775293 | 5775538 | 5775293 | ID=Msa0626330-mRNA-1:exon:1650;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5774861 | 5774947 | 5774861 | ID=Msa0626330-mRNA-1:exon:1649;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5774647 | 5774780 | 5774647 | ID=Msa0626330-mRNA-1:exon:1648;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5774597 | 5774618 | 5774597 | ID=Msa0626330-mRNA-1:exon:1647;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5774485 | 5774576 | 5774485 | ID=Msa0626330-mRNA-1:exon:1646;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5773870 | 5774001 | 5773870 | ID=Msa0626330-mRNA-1:exon:1645;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5773609 | 5773708 | 5773609 | ID=Msa0626330-mRNA-1:exon:1644;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5773209 | 5773277 | 5773209 | ID=Msa0626330-mRNA-1:exon:1643;Parent=Msa0626330-mRNA-1 |
| chr4_3 | exon | 5773051 | 5773110 | 5773051 | ID=Msa0626330-mRNA-1:exon:1642;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5776235 | 5776240 | 5776235 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5775293 | 5775538 | 5775293 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5774861 | 5774947 | 5774861 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5774647 | 5774780 | 5774647 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5774597 | 5774618 | 5774597 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5774485 | 5774576 | 5774485 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5773870 | 5774001 | 5773870 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5773609 | 5773708 | 5773609 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5773209 | 5773277 | 5773209 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| chr4_3 | CDS | 5773051 | 5773110 | 5773051 | ID=Msa0626330-mRNA-1:cds;Parent=Msa0626330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
