Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543490 | Msa0543500 | 0.835599 | 1.527637e-56 | -8.615850e-47 |
| Msa0543500 | Msa0586300 | 0.814040 | 1.886059e-51 | -8.615850e-47 |
| Msa0543500 | Msa0626330 | 0.827720 | 1.338619e-54 | -8.615850e-47 |
| Msa0543500 | Msa0664410 | 0.868241 | 7.557465e-66 | -8.615850e-47 |
| Msa0543500 | Msa0877250 | 0.805258 | 1.456177e-49 | -8.615850e-47 |
| Msa0543500 | Msa1121490 | 0.814555 | 1.451400e-51 | -8.615850e-47 |
| Msa0543500 | Msa1284680 | 0.808359 | 3.219463e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTCTTTAGGTAATTT+TGG | 0.123176 | 4_1:-29861526 | None:intergenic |
| AATCTTTATGTCACTTCTTT+AGG | 0.204658 | 4_1:-29861535 | None:intergenic |
| CCGGGTATTACTACATTACT+TGG | 0.316056 | 4_1:-29860458 | Msa0543510:intron |
| TCTCATTCCCATTGCTCATA+TGG | 0.350967 | 4_1:+29861402 | Msa0543500:CDS |
| ACCTTCCATGCCAATTTCTC+CGG | 0.420398 | 4_1:-29860491 | Msa0543510:CDS |
| CAGTACATGGATGGTATTCA+TGG | 0.423116 | 4_1:-29861497 | None:intergenic |
| TTTCTCCGGACGAAAATAAC+CGG | 0.434754 | 4_1:-29860477 | Msa0543510:CDS |
| GTATTACTACATTACTTGGT+TGG | 0.455892 | 4_1:-29860454 | Msa0543510:intron |
| CATGAATACCATCCATGTAC+TGG | 0.495685 | 4_1:+29861498 | Msa0543500:CDS |
| GGTTGCACCATATGAGCAAT+GGG | 0.518379 | 4_1:-29861409 | None:intergenic |
| TATAGGATGTTGTTCATCAC+TGG | 0.518790 | 4_1:+29861454 | Msa0543500:CDS |
| TGTTCATATGGCATATGTAT+AGG | 0.519920 | 4_1:+29861437 | Msa0543500:CDS |
| GATCAAAATAACGGCGGTGG+CGG | 0.521917 | 4_1:-29861371 | None:intergenic |
| AGAAATTGGCATGGAAGGTA+AGG | 0.522598 | 4_1:+29860495 | Msa0543500:CDS |
| TGGCTCTTCCAGTACATGGA+TGG | 0.532259 | 4_1:-29861506 | None:intergenic |
| TGCAACCCGTGATGTTCATA+TGG | 0.534256 | 4_1:+29861425 | Msa0543500:CDS |
| GTATTCATGGTGTTGATTCG+CGG | 0.540049 | 4_1:-29861484 | None:intergenic |
| TCCGGAGAAATTGGCATGGA+AGG | 0.555042 | 4_1:+29860490 | Msa0543500:CDS |
| GGGTTGCACCATATGAGCAA+TGG | 0.573516 | 4_1:-29861410 | None:intergenic |
| GACGATCAAAATAACGGCGG+TGG | 0.573965 | 4_1:-29861374 | None:intergenic |
| CCAAGTAATGTAGTAATACC+CGG | 0.574627 | 4_1:+29860458 | Msa0543500:CDS |
| ATATGCCATATGAACATCAC+GGG | 0.590381 | 4_1:-29861430 | None:intergenic |
| ATGGATGACGATCAAAATAA+CGG | 0.601177 | 4_1:-29861380 | None:intergenic |
| CATATGCCATATGAACATCA+CGG | 0.625092 | 4_1:-29861431 | None:intergenic |
| TATGAGCAATGGGAATGAGA+TGG | 0.632606 | 4_1:-29861399 | None:intergenic |
| TTCGTCCGGAGAAATTGGCA+TGG | 0.650275 | 4_1:+29860486 | Msa0543500:CDS |
| TTCTCCGGACGAAAATAACC+GGG | 0.655712 | 4_1:-29860476 | Msa0543510:intron |
| GATGACGATCAAAATAACGG+CGG | 0.778224 | 4_1:-29861377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTTATAATAATCTT+AGG | - | chr4_1:29860579-29860598 | None:intergenic | 10.0% |
| !! | AAGTAATTTATAATAATCTT+AGG | - | chr4_1:29860579-29860598 | None:intergenic | 10.0% |
| !!! | ATTTTCAGAAATAATGAAAA+CGG | - | chr4_1:29861028-29861047 | None:intergenic | 15.0% |
| !!! | TTCATTTTAAATTTCTAACA+AGG | - | chr4_1:29861118-29861137 | None:intergenic | 15.0% |
| !!! | ATTTTCAGAAATAATGAAAA+CGG | - | chr4_1:29861028-29861047 | None:intergenic | 15.0% |
| !!! | TTCATTTTAAATTTCTAACA+AGG | - | chr4_1:29861118-29861137 | None:intergenic | 15.0% |
| !!! | ACATTTTATTAGGGATTTAT+TGG | - | chr4_1:29860390-29860409 | Msa0543510:intron | 20.0% |
| !! | CATACTATCTATGATAAAAT+AGG | + | chr4_1:29860709-29860728 | Msa0543500:intron | 20.0% |
| !! | TATATATATGCTTATGAACT+AGG | + | chr4_1:29860738-29860757 | Msa0543500:intron | 20.0% |
| !!! | TCATTTTCGTTTAGAATTTT+CGG | + | chr4_1:29860958-29860977 | Msa0543500:intron | 20.0% |
| !!! | TTGACTTTTTAAAACATTTC+TGG | - | chr4_1:29861001-29861020 | None:intergenic | 20.0% |
| !!! | ACATTTTATTAGGGATTTAT+TGG | - | chr4_1:29860390-29860409 | Msa0543510:intron | 20.0% |
| !! | CATACTATCTATGATAAAAT+AGG | + | chr4_1:29860709-29860728 | Msa0543500:intron | 20.0% |
| !! | TATATATATGCTTATGAACT+AGG | + | chr4_1:29860738-29860757 | Msa0543500:intron | 20.0% |
| !!! | TCATTTTCGTTTAGAATTTT+CGG | + | chr4_1:29860958-29860977 | Msa0543500:intron | 20.0% |
| !!! | TTGACTTTTTAAAACATTTC+TGG | - | chr4_1:29861001-29861020 | None:intergenic | 20.0% |
| !! | GCTCATGAAACATTTTATTA+GGG | - | chr4_1:29860399-29860418 | Msa0543510:intron | 25.0% |
| ! | ACTATCTATGATAAAATAGG+AGG | + | chr4_1:29860712-29860731 | Msa0543500:intron | 25.0% |
| ! | CTATCTATGATAAAATAGGA+GGG | + | chr4_1:29860713-29860732 | Msa0543500:intron | 25.0% |
| ! | AAAATGAAAACAGGATACAT+GGG | - | chr4_1:29860886-29860905 | None:intergenic | 25.0% |
| ! | ATTCTAAACGAAAATGATGA+GGG | - | chr4_1:29860955-29860974 | None:intergenic | 25.0% |
| ! | AATTCTAAACGAAAATGATG+AGG | - | chr4_1:29860956-29860975 | None:intergenic | 25.0% |
| !!! | ACACTTTAATAATGGATCAA+GGG | - | chr4_1:29861286-29861305 | None:intergenic | 25.0% |
| ! | TGACAATCACACTTTAATAA+TGG | - | chr4_1:29861294-29861313 | None:intergenic | 25.0% |
| !! | GCTCATGAAACATTTTATTA+GGG | - | chr4_1:29860399-29860418 | Msa0543510:intron | 25.0% |
| ! | ACTATCTATGATAAAATAGG+AGG | + | chr4_1:29860712-29860731 | Msa0543500:intron | 25.0% |
| ! | CTATCTATGATAAAATAGGA+GGG | + | chr4_1:29860713-29860732 | Msa0543500:intron | 25.0% |
| ! | AAAATGAAAACAGGATACAT+GGG | - | chr4_1:29860886-29860905 | None:intergenic | 25.0% |
| ! | ATTCTAAACGAAAATGATGA+GGG | - | chr4_1:29860955-29860974 | None:intergenic | 25.0% |
| ! | AATTCTAAACGAAAATGATG+AGG | - | chr4_1:29860956-29860975 | None:intergenic | 25.0% |
| !!! | ACACTTTAATAATGGATCAA+GGG | - | chr4_1:29861286-29861305 | None:intergenic | 25.0% |
| ! | TGACAATCACACTTTAATAA+TGG | - | chr4_1:29861294-29861313 | None:intergenic | 25.0% |
| TGATTAGATTTCGTGAAAAG+CGG | - | chr4_1:29860326-29860345 | Msa0543510:CDS | 30.0% | |
| ! | GGCTCATGAAACATTTTATT+AGG | - | chr4_1:29860400-29860419 | Msa0543510:intron | 30.0% |
| GTATTACTACATTACTTGGT+TGG | - | chr4_1:29860457-29860476 | Msa0543510:intron | 30.0% | |
| CAATCTGTACTACTGTTATT+GGG | - | chr4_1:29860541-29860560 | Msa0543510:CDS | 30.0% | |
| TCAATCTGTACTACTGTTAT+TGG | - | chr4_1:29860542-29860561 | Msa0543510:CDS | 30.0% | |
| ATCCATTGTTAATCCTGTTA+TGG | - | chr4_1:29860632-29860651 | None:intergenic | 30.0% | |
| ATATATGCTTATGAACTAGG+AGG | + | chr4_1:29860741-29860760 | Msa0543500:intron | 30.0% | |
| TATATGCTTATGAACTAGGA+GGG | + | chr4_1:29860742-29860761 | Msa0543500:intron | 30.0% | |
| ! | GACTAACTTTTCTTCTAACT+TGG | - | chr4_1:29860771-29860790 | None:intergenic | 30.0% |
| !!! | GATGTTTGGTTTTTCTTTTC+TGG | - | chr4_1:29860839-29860858 | None:intergenic | 30.0% |
| GAAAATGAAAACAGGATACA+TGG | - | chr4_1:29860887-29860906 | None:intergenic | 30.0% | |
| GTTGAAGTGAAAATGAAAAC+AGG | - | chr4_1:29860895-29860914 | None:intergenic | 30.0% | |
| ATGTAGTGAATAACTGTGAT+AGG | - | chr4_1:29861082-29861101 | None:intergenic | 30.0% | |
| !!! | ATAAGTTGATGAACCTTTTC+TGG | + | chr4_1:29861194-29861213 | Msa0543500:intron | 30.0% |
| !! | CACACTTTAATAATGGATCA+AGG | - | chr4_1:29861287-29861306 | None:intergenic | 30.0% |
| ATGGATGACGATCAAAATAA+CGG | - | chr4_1:29861383-29861402 | None:intergenic | 30.0% | |
| TGTTCATATGGCATATGTAT+AGG | + | chr4_1:29861437-29861456 | Msa0543500:CDS | 30.0% | |
| ! | GTCACTTCTTTAGGTAATTT+TGG | - | chr4_1:29861529-29861548 | None:intergenic | 30.0% |
| TGATTAGATTTCGTGAAAAG+CGG | - | chr4_1:29860326-29860345 | Msa0543510:CDS | 30.0% | |
| ! | GGCTCATGAAACATTTTATT+AGG | - | chr4_1:29860400-29860419 | Msa0543510:intron | 30.0% |
| GTATTACTACATTACTTGGT+TGG | - | chr4_1:29860457-29860476 | Msa0543510:intron | 30.0% | |
| CAATCTGTACTACTGTTATT+GGG | - | chr4_1:29860541-29860560 | Msa0543510:CDS | 30.0% | |
| TCAATCTGTACTACTGTTAT+TGG | - | chr4_1:29860542-29860561 | Msa0543510:CDS | 30.0% | |
| ATCCATTGTTAATCCTGTTA+TGG | - | chr4_1:29860632-29860651 | None:intergenic | 30.0% | |
| ATATATGCTTATGAACTAGG+AGG | + | chr4_1:29860741-29860760 | Msa0543500:intron | 30.0% | |
| TATATGCTTATGAACTAGGA+GGG | + | chr4_1:29860742-29860761 | Msa0543500:intron | 30.0% | |
| ! | GACTAACTTTTCTTCTAACT+TGG | - | chr4_1:29860771-29860790 | None:intergenic | 30.0% |
| !!! | GATGTTTGGTTTTTCTTTTC+TGG | - | chr4_1:29860839-29860858 | None:intergenic | 30.0% |
| GAAAATGAAAACAGGATACA+TGG | - | chr4_1:29860887-29860906 | None:intergenic | 30.0% | |
| GTTGAAGTGAAAATGAAAAC+AGG | - | chr4_1:29860895-29860914 | None:intergenic | 30.0% | |
| ATGTAGTGAATAACTGTGAT+AGG | - | chr4_1:29861082-29861101 | None:intergenic | 30.0% | |
| !!! | ATAAGTTGATGAACCTTTTC+TGG | + | chr4_1:29861194-29861213 | Msa0543500:intron | 30.0% |
| !! | CACACTTTAATAATGGATCA+AGG | - | chr4_1:29861287-29861306 | None:intergenic | 30.0% |
| ATGGATGACGATCAAAATAA+CGG | - | chr4_1:29861383-29861402 | None:intergenic | 30.0% | |
| TGTTCATATGGCATATGTAT+AGG | + | chr4_1:29861437-29861456 | Msa0543500:CDS | 30.0% | |
| ! | GTCACTTCTTTAGGTAATTT+TGG | - | chr4_1:29861529-29861548 | None:intergenic | 30.0% |
| AAAGAAGTAGCACTAAGGTA+TGG | - | chr4_1:29860261-29860280 | None:intergenic | 35.0% | |
| TTCGTAAAGAAGTAGCACTA+AGG | - | chr4_1:29860266-29860285 | Msa0543510:CDS | 35.0% | |
| ATCAATGAAGCTAATCTCTG+AGG | + | chr4_1:29860342-29860361 | Msa0543500:intron | 35.0% | |
| TCAATGAAGCTAATCTCTGA+GGG | + | chr4_1:29860343-29860362 | Msa0543500:intron | 35.0% | |
| ! | GTTTTTGCTGGTCAAATATC+TGG | - | chr4_1:29860421-29860440 | Msa0543510:intron | 35.0% |
| !! | GTTCGATTGATAGTTTTTGC+TGG | - | chr4_1:29860433-29860452 | Msa0543510:intron | 35.0% |
| CCAAGTAATGTAGTAATACC+CGG | + | chr4_1:29860458-29860477 | Msa0543500:CDS | 35.0% | |
| ! | TTATTTTCGTCCGGAGAAAT+TGG | + | chr4_1:29860481-29860500 | Msa0543500:CDS | 35.0% |
| !! | TAATCTTAGGTGTCATTGCT+AGG | - | chr4_1:29860566-29860585 | None:intergenic | 35.0% |
| ! | TCTAAAATCAAACCCTTTGC+AGG | + | chr4_1:29860599-29860618 | Msa0543500:intron | 35.0% |
| CTAAAATCAAACCCTTTGCA+GGG | + | chr4_1:29860600-29860619 | Msa0543500:intron | 35.0% | |
| GTCCATAACAGGATTAACAA+TGG | + | chr4_1:29860627-29860646 | Msa0543500:intron | 35.0% | |
| ! | GTACTTTGTTGTCGATGAAT+TGG | - | chr4_1:29860811-29860830 | None:intergenic | 35.0% |
| ACCAAACATCCTTAAAAGCA+AGG | + | chr4_1:29860849-29860868 | Msa0543500:intron | 35.0% | |
| TAACTGTGATAGGAAGAAGA+TGG | - | chr4_1:29861072-29861091 | None:intergenic | 35.0% | |
| ! | CAGCTTACTTTGTCTTTTCA+GGG | - | chr4_1:29861248-29861267 | None:intergenic | 35.0% |
| ! | TCAGCTTACTTTGTCTTTTC+AGG | - | chr4_1:29861249-29861268 | None:intergenic | 35.0% |
| ATGGATCAAGGGAATGATAT+TGG | - | chr4_1:29861275-29861294 | None:intergenic | 35.0% | |
| GTCATGAAGATTTCCATTGT+TGG | + | chr4_1:29861310-29861329 | Msa0543500:intron | 35.0% | |
| ATATGCCATATGAACATCAC+GGG | - | chr4_1:29861433-29861452 | None:intergenic | 35.0% | |
| CATATGCCATATGAACATCA+CGG | - | chr4_1:29861434-29861453 | None:intergenic | 35.0% | |
| TATAGGATGTTGTTCATCAC+TGG | + | chr4_1:29861454-29861473 | Msa0543500:CDS | 35.0% | |
| AAAGAAGTAGCACTAAGGTA+TGG | - | chr4_1:29860261-29860280 | None:intergenic | 35.0% | |
| TTCGTAAAGAAGTAGCACTA+AGG | - | chr4_1:29860266-29860285 | Msa0543510:CDS | 35.0% | |
| ATCAATGAAGCTAATCTCTG+AGG | + | chr4_1:29860342-29860361 | Msa0543500:intron | 35.0% | |
| TCAATGAAGCTAATCTCTGA+GGG | + | chr4_1:29860343-29860362 | Msa0543500:intron | 35.0% | |
| ! | GTTTTTGCTGGTCAAATATC+TGG | - | chr4_1:29860421-29860440 | Msa0543510:intron | 35.0% |
| !! | GTTCGATTGATAGTTTTTGC+TGG | - | chr4_1:29860433-29860452 | Msa0543510:intron | 35.0% |
| CCAAGTAATGTAGTAATACC+CGG | + | chr4_1:29860458-29860477 | Msa0543500:CDS | 35.0% | |
| ! | TTATTTTCGTCCGGAGAAAT+TGG | + | chr4_1:29860481-29860500 | Msa0543500:CDS | 35.0% |
| !! | TAATCTTAGGTGTCATTGCT+AGG | - | chr4_1:29860566-29860585 | None:intergenic | 35.0% |
| ! | TCTAAAATCAAACCCTTTGC+AGG | + | chr4_1:29860599-29860618 | Msa0543500:intron | 35.0% |
| CTAAAATCAAACCCTTTGCA+GGG | + | chr4_1:29860600-29860619 | Msa0543500:intron | 35.0% | |
| GTCCATAACAGGATTAACAA+TGG | + | chr4_1:29860627-29860646 | Msa0543500:intron | 35.0% | |
| ! | GTACTTTGTTGTCGATGAAT+TGG | - | chr4_1:29860811-29860830 | None:intergenic | 35.0% |
| ACCAAACATCCTTAAAAGCA+AGG | + | chr4_1:29860849-29860868 | Msa0543500:intron | 35.0% | |
| TAACTGTGATAGGAAGAAGA+TGG | - | chr4_1:29861072-29861091 | None:intergenic | 35.0% | |
| ! | CAGCTTACTTTGTCTTTTCA+GGG | - | chr4_1:29861248-29861267 | None:intergenic | 35.0% |
| ! | TCAGCTTACTTTGTCTTTTC+AGG | - | chr4_1:29861249-29861268 | None:intergenic | 35.0% |
| ATGGATCAAGGGAATGATAT+TGG | - | chr4_1:29861275-29861294 | None:intergenic | 35.0% | |
| GTCATGAAGATTTCCATTGT+TGG | + | chr4_1:29861310-29861329 | Msa0543500:intron | 35.0% | |
| ATATGCCATATGAACATCAC+GGG | - | chr4_1:29861433-29861452 | None:intergenic | 35.0% | |
| CATATGCCATATGAACATCA+CGG | - | chr4_1:29861434-29861453 | None:intergenic | 35.0% | |
| TATAGGATGTTGTTCATCAC+TGG | + | chr4_1:29861454-29861473 | Msa0543500:CDS | 35.0% | |
| TAGATTTCGTGAAAAGCGGA+AGG | - | chr4_1:29860322-29860341 | Msa0543510:CDS | 40.0% | |
| CCGGGTATTACTACATTACT+TGG | - | chr4_1:29860461-29860480 | Msa0543510:intron | 40.0% | |
| !! | AATACCCGGTTATTTTCGTC+CGG | + | chr4_1:29860472-29860491 | Msa0543500:CDS | 40.0% |
| TTTCTCCGGACGAAAATAAC+CGG | - | chr4_1:29860480-29860499 | Msa0543510:CDS | 40.0% | |
| AGAAATTGGCATGGAAGGTA+AGG | + | chr4_1:29860495-29860514 | Msa0543500:CDS | 40.0% | |
| CTGTACTACTGTTATTGGGA+GGG | - | chr4_1:29860537-29860556 | Msa0543510:CDS | 40.0% | |
| TCTGTACTACTGTTATTGGG+AGG | - | chr4_1:29860538-29860557 | Msa0543510:CDS | 40.0% | |
| ! | TATGGACTATTCCCTGCAAA+GGG | - | chr4_1:29860614-29860633 | None:intergenic | 40.0% |
| ! | TTATGGACTATTCCCTGCAA+AGG | - | chr4_1:29860615-29860634 | None:intergenic | 40.0% |
| !! | GCCTTGCTTTTAAGGATGTT+TGG | - | chr4_1:29860853-29860872 | None:intergenic | 40.0% |
| !! | GTAATGGAGCCTTGCTTTTA+AGG | - | chr4_1:29860861-29860880 | None:intergenic | 40.0% |
| ACAGGATACATGGGAAGTAA+TGG | - | chr4_1:29860877-29860896 | None:intergenic | 40.0% | |
| !! | ATGAACCTTTTCTGGTGACA+CGG | + | chr4_1:29861202-29861221 | Msa0543500:intron | 40.0% |
| GAAGATTTCCATTGTTGGAG+TGG | + | chr4_1:29861315-29861334 | Msa0543500:intron | 40.0% | |
| TGATTCTAACTGTGAGAGTG+CGG | - | chr4_1:29861351-29861370 | None:intergenic | 40.0% | |
| GATGACGATCAAAATAACGG+CGG | - | chr4_1:29861380-29861399 | None:intergenic | 40.0% | |
| TATGAGCAATGGGAATGAGA+TGG | - | chr4_1:29861402-29861421 | None:intergenic | 40.0% | |
| TCTCATTCCCATTGCTCATA+TGG | + | chr4_1:29861402-29861421 | Msa0543500:CDS | 40.0% | |
| !! | GTATTCATGGTGTTGATTCG+CGG | - | chr4_1:29861487-29861506 | None:intergenic | 40.0% |
| CAGTACATGGATGGTATTCA+TGG | - | chr4_1:29861500-29861519 | None:intergenic | 40.0% | |
| CATGAATACCATCCATGTAC+TGG | + | chr4_1:29861498-29861517 | Msa0543500:CDS | 40.0% | |
| !!! | ATTTTGGCTCTTCCAGTACA+TGG | - | chr4_1:29861513-29861532 | None:intergenic | 40.0% |
| TAGATTTCGTGAAAAGCGGA+AGG | - | chr4_1:29860322-29860341 | Msa0543510:CDS | 40.0% | |
| CCGGGTATTACTACATTACT+TGG | - | chr4_1:29860461-29860480 | Msa0543510:intron | 40.0% | |
| !! | AATACCCGGTTATTTTCGTC+CGG | + | chr4_1:29860472-29860491 | Msa0543500:CDS | 40.0% |
| TTTCTCCGGACGAAAATAAC+CGG | - | chr4_1:29860480-29860499 | Msa0543510:CDS | 40.0% | |
| AGAAATTGGCATGGAAGGTA+AGG | + | chr4_1:29860495-29860514 | Msa0543500:CDS | 40.0% | |
| CTGTACTACTGTTATTGGGA+GGG | - | chr4_1:29860537-29860556 | Msa0543510:CDS | 40.0% | |
| TCTGTACTACTGTTATTGGG+AGG | - | chr4_1:29860538-29860557 | Msa0543510:CDS | 40.0% | |
| ! | TATGGACTATTCCCTGCAAA+GGG | - | chr4_1:29860614-29860633 | None:intergenic | 40.0% |
| ! | TTATGGACTATTCCCTGCAA+AGG | - | chr4_1:29860615-29860634 | None:intergenic | 40.0% |
| !! | GCCTTGCTTTTAAGGATGTT+TGG | - | chr4_1:29860853-29860872 | None:intergenic | 40.0% |
| !! | GTAATGGAGCCTTGCTTTTA+AGG | - | chr4_1:29860861-29860880 | None:intergenic | 40.0% |
| ACAGGATACATGGGAAGTAA+TGG | - | chr4_1:29860877-29860896 | None:intergenic | 40.0% | |
| !! | ATGAACCTTTTCTGGTGACA+CGG | + | chr4_1:29861202-29861221 | Msa0543500:intron | 40.0% |
| GAAGATTTCCATTGTTGGAG+TGG | + | chr4_1:29861315-29861334 | Msa0543500:intron | 40.0% | |
| TGATTCTAACTGTGAGAGTG+CGG | - | chr4_1:29861351-29861370 | None:intergenic | 40.0% | |
| GATGACGATCAAAATAACGG+CGG | - | chr4_1:29861380-29861399 | None:intergenic | 40.0% | |
| TATGAGCAATGGGAATGAGA+TGG | - | chr4_1:29861402-29861421 | None:intergenic | 40.0% | |
| TCTCATTCCCATTGCTCATA+TGG | + | chr4_1:29861402-29861421 | Msa0543500:CDS | 40.0% | |
| !! | GTATTCATGGTGTTGATTCG+CGG | - | chr4_1:29861487-29861506 | None:intergenic | 40.0% |
| CAGTACATGGATGGTATTCA+TGG | - | chr4_1:29861500-29861519 | None:intergenic | 40.0% | |
| CATGAATACCATCCATGTAC+TGG | + | chr4_1:29861498-29861517 | Msa0543500:CDS | 40.0% | |
| !!! | ATTTTGGCTCTTCCAGTACA+TGG | - | chr4_1:29861513-29861532 | None:intergenic | 40.0% |
| TTCTCCGGACGAAAATAACC+GGG | - | chr4_1:29860479-29860498 | Msa0543510:CDS | 45.0% | |
| ACCTTCCATGCCAATTTCTC+CGG | - | chr4_1:29860494-29860513 | Msa0543510:CDS | 45.0% | |
| ATTGGCATGGAAGGTAAGGT+TGG | + | chr4_1:29860499-29860518 | Msa0543500:intron | 45.0% | |
| TGCAGGGAATAGTCCATAAC+AGG | + | chr4_1:29860616-29860635 | Msa0543500:intron | 45.0% | |
| CAATTATAACACGCGCCTCA+AGG | + | chr4_1:29860674-29860693 | Msa0543500:intron | 45.0% | |
| ATGCAGTTTAACACGCCTTG+AGG | - | chr4_1:29860692-29860711 | None:intergenic | 45.0% | |
| GGTGAAATCCACTCCAACAA+TGG | - | chr4_1:29861326-29861345 | None:intergenic | 45.0% | |
| GGTTGCACCATATGAGCAAT+GGG | - | chr4_1:29861412-29861431 | None:intergenic | 45.0% | |
| TGCAACCCGTGATGTTCATA+TGG | + | chr4_1:29861425-29861444 | Msa0543500:CDS | 45.0% | |
| TTCTCCGGACGAAAATAACC+GGG | - | chr4_1:29860479-29860498 | Msa0543510:CDS | 45.0% | |
| ACCTTCCATGCCAATTTCTC+CGG | - | chr4_1:29860494-29860513 | Msa0543510:CDS | 45.0% | |
| ATTGGCATGGAAGGTAAGGT+TGG | + | chr4_1:29860499-29860518 | Msa0543500:intron | 45.0% | |
| TGCAGGGAATAGTCCATAAC+AGG | + | chr4_1:29860616-29860635 | Msa0543500:intron | 45.0% | |
| CAATTATAACACGCGCCTCA+AGG | + | chr4_1:29860674-29860693 | Msa0543500:intron | 45.0% | |
| ATGCAGTTTAACACGCCTTG+AGG | - | chr4_1:29860692-29860711 | None:intergenic | 45.0% | |
| GGTGAAATCCACTCCAACAA+TGG | - | chr4_1:29861326-29861345 | None:intergenic | 45.0% | |
| GGTTGCACCATATGAGCAAT+GGG | - | chr4_1:29861412-29861431 | None:intergenic | 45.0% | |
| TGCAACCCGTGATGTTCATA+TGG | + | chr4_1:29861425-29861444 | Msa0543500:CDS | 45.0% | |
| ! | TGAGGGACGCTGAGTTTTTC+TGG | + | chr4_1:29860360-29860379 | Msa0543500:intron | 50.0% |
| TTCGTCCGGAGAAATTGGCA+TGG | + | chr4_1:29860486-29860505 | Msa0543500:CDS | 50.0% | |
| TCCGGAGAAATTGGCATGGA+AGG | + | chr4_1:29860490-29860509 | Msa0543500:CDS | 50.0% | |
| TGACTCCGTGTCACCAGAAA+AGG | - | chr4_1:29861210-29861229 | None:intergenic | 50.0% | |
| ! | TCTAACTGTGAGAGTGCGGA+AGG | - | chr4_1:29861347-29861366 | None:intergenic | 50.0% |
| GATCAAAATAACGGCGGTGG+CGG | - | chr4_1:29861374-29861393 | None:intergenic | 50.0% | |
| GACGATCAAAATAACGGCGG+TGG | - | chr4_1:29861377-29861396 | None:intergenic | 50.0% | |
| GGGTTGCACCATATGAGCAA+TGG | - | chr4_1:29861413-29861432 | None:intergenic | 50.0% | |
| TGGCTCTTCCAGTACATGGA+TGG | - | chr4_1:29861509-29861528 | None:intergenic | 50.0% | |
| ! | TGAGGGACGCTGAGTTTTTC+TGG | + | chr4_1:29860360-29860379 | Msa0543500:intron | 50.0% |
| TTCGTCCGGAGAAATTGGCA+TGG | + | chr4_1:29860486-29860505 | Msa0543500:CDS | 50.0% | |
| TCCGGAGAAATTGGCATGGA+AGG | + | chr4_1:29860490-29860509 | Msa0543500:CDS | 50.0% | |
| TGACTCCGTGTCACCAGAAA+AGG | - | chr4_1:29861210-29861229 | None:intergenic | 50.0% | |
| ! | TCTAACTGTGAGAGTGCGGA+AGG | - | chr4_1:29861347-29861366 | None:intergenic | 50.0% |
| GATCAAAATAACGGCGGTGG+CGG | - | chr4_1:29861374-29861393 | None:intergenic | 50.0% | |
| GACGATCAAAATAACGGCGG+TGG | - | chr4_1:29861377-29861396 | None:intergenic | 50.0% | |
| GGGTTGCACCATATGAGCAA+TGG | - | chr4_1:29861413-29861432 | None:intergenic | 50.0% | |
| TGGCTCTTCCAGTACATGGA+TGG | - | chr4_1:29861509-29861528 | None:intergenic | 50.0% | |
| GGCATGGAAGGTAAGGTTGG+AGG | + | chr4_1:29860502-29860521 | Msa0543500:intron | 55.0% | |
| GGCATGGAAGGTAAGGTTGG+AGG | + | chr4_1:29860502-29860521 | Msa0543500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 29860245 | 29861552 | 29860245 | ID=Msa0543500;Name=Msa0543500 |
| chr4_1 | mRNA | 29860245 | 29861552 | 29860245 | ID=Msa0543500-mRNA-1;Parent=Msa0543500;Name=Msa0543500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.5|0.33|3|0|95 |
| chr4_1 | exon | 29860245 | 29860250 | 29860245 | ID=Msa0543500-mRNA-1:exon:7901;Parent=Msa0543500-mRNA-1 |
| chr4_1 | exon | 29860422 | 29860516 | 29860422 | ID=Msa0543500-mRNA-1:exon:7902;Parent=Msa0543500-mRNA-1 |
| chr4_1 | exon | 29861366 | 29861552 | 29861366 | ID=Msa0543500-mRNA-1:exon:7903;Parent=Msa0543500-mRNA-1 |
| chr4_1 | CDS | 29860245 | 29860250 | 29860245 | ID=Msa0543500-mRNA-1:cds;Parent=Msa0543500-mRNA-1 |
| chr4_1 | CDS | 29860422 | 29860516 | 29860422 | ID=Msa0543500-mRNA-1:cds;Parent=Msa0543500-mRNA-1 |
| chr4_1 | CDS | 29861366 | 29861552 | 29861366 | ID=Msa0543500-mRNA-1:cds;Parent=Msa0543500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
