Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664410 | XP_004507018.1 | 86.777 | 121 | 15 | 1 | 1 | 120 | 178 | 298 | 2.02e-67 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664410 | sp|Q8H1G0|GAT28_ARATH | 60.684 | 117 | 46 | 0 | 1 | 117 | 179 | 295 | 6.02e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664410 | A0A1S2YMG4 | 86.777 | 121 | 15 | 1 | 1 | 120 | 178 | 298 | 9.64e-68 | 215 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0664410 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044260 | Msa0664410 | 0.802344 | 5.865916e-49 | -8.615850e-47 |
| Msa0044330 | Msa0664410 | 0.800535 | 1.377247e-48 | -8.615850e-47 |
| Msa0095970 | Msa0664410 | 0.808698 | 2.725299e-50 | -8.615850e-47 |
| Msa0116770 | Msa0664410 | 0.804188 | 2.434783e-49 | -8.615850e-47 |
| Msa0626090 | Msa0664410 | 0.804524 | 2.072842e-49 | -8.615850e-47 |
| Msa0626330 | Msa0664410 | 0.824247 | 8.948992e-54 | -8.615850e-47 |
| Msa0664410 | Msa0735170 | 0.802571 | 5.266870e-49 | -8.615850e-47 |
| Msa0664410 | Msa0735660 | 0.811260 | 7.652755e-51 | -8.615850e-47 |
| Msa0664410 | Msa0753720 | 0.816026 | 6.835082e-52 | -8.615850e-47 |
| Msa0664410 | Msa0766630 | 0.804003 | 2.660748e-49 | -8.615850e-47 |
| Msa0664410 | Msa0975220 | 0.800051 | 1.727945e-48 | -8.615850e-47 |
| Msa0664410 | Msa1014540 | 0.806198 | 9.243886e-50 | -8.615850e-47 |
| Msa0664410 | Msa1030970 | 0.812322 | 4.493390e-51 | -8.615850e-47 |
| Msa0664410 | Msa1075220 | -0.802391 | 5.736629e-49 | -8.615850e-47 |
| Msa0664410 | Msa1075540 | 0.814571 | 1.440023e-51 | -8.615850e-47 |
| Msa0664410 | Msa1121490 | 0.810004 | 1.429818e-50 | -8.615850e-47 |
| Msa0664410 | Msa1134450 | 0.812849 | 3.446773e-51 | -8.615850e-47 |
| Msa0664410 | Msa1137570 | 0.819715 | 1.003929e-52 | -8.615850e-47 |
| Msa0664410 | Msa1174040 | 0.803085 | 4.123973e-49 | -8.615850e-47 |
| Msa0664410 | Msa1276890 | 0.802124 | 6.509053e-49 | -8.615850e-47 |
| Msa0664410 | Msa1284680 | 0.826361 | 2.829196e-54 | -8.615850e-47 |
| Msa0664410 | Msa1353470 | 0.818649 | 1.755338e-52 | -8.615850e-47 |
| Msa0664410 | Msa1466540 | 0.804635 | 1.964928e-49 | -8.615850e-47 |
| Msa0165210 | Msa0664410 | 0.822468 | 2.331673e-53 | -8.615850e-47 |
| Msa0165220 | Msa0664410 | 0.800164 | 1.638682e-48 | -8.615850e-47 |
| Msa0198340 | Msa0664410 | 0.809765 | 1.609336e-50 | -8.615850e-47 |
| Msa0223260 | Msa0664410 | 0.834548 | 2.811859e-56 | -8.615850e-47 |
| Msa0443260 | Msa0664410 | 0.811570 | 6.555121e-51 | -8.615850e-47 |
| Msa0512750 | Msa0664410 | 0.805318 | 1.414364e-49 | -8.615850e-47 |
| Msa0543490 | Msa0664410 | 0.897459 | 1.378076e-76 | -8.615850e-47 |
| Msa0543500 | Msa0664410 | 0.868241 | 7.557465e-66 | -8.615850e-47 |
| Msa0586300 | Msa0664410 | 0.856449 | 3.193918e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664410 | MtrunA17_Chr4g0002231 | 87.342 | 79 | 10 | 0 | 1 | 79 | 57 | 135 | 9.66e-48 | 150 |
| Msa0664410 | MtrunA17_Chr4g0002251 | 67.606 | 71 | 15 | 1 | 43 | 113 | 7 | 69 | 3.76e-28 | 98.2 |
| Msa0664410 | MtrunA17_Chr5g0427661 | 48.718 | 117 | 30 | 4 | 1 | 95 | 167 | 275 | 1.70e-26 | 99.8 |
| Msa0664410 | MtrunA17_Chr3g0132761 | 58.621 | 87 | 26 | 2 | 1 | 86 | 164 | 241 | 2.14e-25 | 97.1 |
| Msa0664410 | MtrunA17_Chr3g0132751 | 51.724 | 87 | 37 | 1 | 1 | 87 | 163 | 244 | 1.44e-23 | 93.2 |
| Msa0664410 | MtrunA17_Chr4g0049741 | 49.020 | 102 | 39 | 3 | 1 | 99 | 140 | 231 | 2.58e-23 | 92.0 |
| Msa0664410 | MtrunA17_Chr3g0102511 | 42.529 | 87 | 43 | 2 | 1 | 87 | 11 | 90 | 6.67e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664410 | AT1G51600.1 | 60.684 | 117 | 46 | 0 | 1 | 117 | 179 | 295 | 6.12e-46 | 150 |
| Msa0664410 | AT1G51600.2 | 60.684 | 117 | 46 | 0 | 1 | 117 | 179 | 295 | 6.12e-46 | 150 |
| Msa0664410 | AT3G21175.2 | 59.649 | 114 | 43 | 2 | 1 | 112 | 173 | 285 | 5.08e-40 | 135 |
| Msa0664410 | AT3G21175.1 | 59.649 | 114 | 43 | 2 | 1 | 112 | 175 | 287 | 5.32e-40 | 135 |
| Msa0664410 | AT4G24470.3 | 57.471 | 87 | 29 | 2 | 1 | 87 | 178 | 256 | 3.03e-27 | 102 |
| Msa0664410 | AT4G24470.1 | 57.471 | 87 | 29 | 2 | 1 | 87 | 178 | 256 | 3.39e-27 | 102 |
| Msa0664410 | AT4G24470.2 | 57.471 | 87 | 29 | 2 | 1 | 87 | 178 | 256 | 3.39e-27 | 102 |
Find 38 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTCATTCTTGTTTAA+TGG | 0.137752 | 4_4:+3406388 | None:intergenic |
| TGGACTTATGTGGGCAAATA+AGG | 0.243603 | 4_4:-3406794 | Msa0664410:intron |
| TGGACTTGGCAGATGTAAAT+TGG | 0.265787 | 4_4:+3407150 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_4:+3406826 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_4:+3406817 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.321682 | 4_4:-3407173 | None:intergenic |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_4:+3406844 | None:intergenic |
| ATCAAGGACAGCAACCTTGC+CGG | 0.414254 | 4_4:-3406422 | Msa0664410:CDS |
| ATCTCTAAGCACTGTCTGAT+TGG | 0.416220 | 4_4:+3406261 | None:intergenic |
| TGAACCACAGGGAGCGCTTA+GGG | 0.440040 | 4_4:-3406449 | Msa0664410:intron |
| TCAGCTGATGCAGACTCATC+AGG | 0.441839 | 4_4:+3407125 | None:intergenic |
| GCAAGGTTGCTGTCCTTGAT+AGG | 0.445283 | 4_4:+3406425 | None:intergenic |
| TTGAACCACAGGGAGCGCTT+AGG | 0.472073 | 4_4:-3406450 | Msa0664410:intron |
| TTACACGGTATCTTGCTGTT+GGG | 0.489725 | 4_4:+3407055 | None:intergenic |
| GCAATGCTTGTGGACTTATG+TGG | 0.493003 | 4_4:-3406804 | Msa0664410:CDS |
| CGGAACAAGTGAAGGTTTGA+CGG | 0.497532 | 4_4:-3407093 | Msa0664410:CDS |
| CTTACACGGTATCTTGCTGT+TGG | 0.501886 | 4_4:+3407054 | None:intergenic |
| GGTTTGACGGTAGACAATAA+TGG | 0.505445 | 4_4:-3407080 | Msa0664410:CDS |
| AAGCACTGTCTGATTGGCCT+CGG | 0.507209 | 4_4:+3406267 | None:intergenic |
| AGACTCATCAGGATTGGACT+TGG | 0.520027 | 4_4:+3407136 | None:intergenic |
| TTCTCCATTAAACAAGAATG+AGG | 0.532237 | 4_4:-3406392 | Msa0664410:intron |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_4:-3406841 | Msa0664410:CDS |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_4:-3406814 | Msa0664410:CDS |
| TGATGCAGACTCATCAGGAT+TGG | 0.539391 | 4_4:+3407130 | None:intergenic |
| ATAAATTGCGGAACAAGTGA+AGG | 0.554129 | 4_4:-3407101 | Msa0664410:CDS |
| GAGCGCTTAGGGACCTATCA+AGG | 0.562951 | 4_4:-3406438 | Msa0664410:CDS |
| TGGAGAATTATGTGCCGGCA+AGG | 0.571633 | 4_4:+3406408 | None:intergenic |
| CAATGCTTGTGGACTTATGT+GGG | 0.580586 | 4_4:-3406803 | Msa0664410:CDS |
| TTTAATGGAGAATTATGTGC+CGG | 0.581798 | 4_4:+3406403 | None:intergenic |
| TAATGTAAAGGTCTGTCATG+AGG | 0.590668 | 4_4:+3406228 | None:intergenic |
| AATGTAAAGGTCTGTCATGA+GGG | 0.591336 | 4_4:+3406229 | None:intergenic |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_4:-3406840 | Msa0664410:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_4:-3406855 | Msa0664410:CDS |
| CATGTCAGTTGTAGGCATTG+TGG | 0.641895 | 4_4:-3406886 | Msa0664410:intron |
| GCATCAGCTGAAATAAATTG+CGG | 0.642078 | 4_4:-3407113 | Msa0664410:CDS |
| TAAGTCCACAAGCATTGCAG+AGG | 0.655536 | 4_4:+3406809 | None:intergenic |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_4:-3406850 | Msa0664410:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.674174 | 4_4:+3406810 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_4:3406423-3406442 | Msa0664410:CDS | 15.0% |
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_4:3406423-3406442 | Msa0664410:CDS | 15.0% |
| !! | TCTAATCTATATATTATGGT+TGG | - | chr4_4:3406427-3406446 | Msa0664410:CDS | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | + | chr4_4:3406693-3406712 | None:intergenic | 20.0% |
| !! | AAACGAATAAATCAAAAAGA+AGG | + | chr4_4:3406925-3406944 | None:intergenic | 20.0% |
| !! | TCTAATCTATATATTATGGT+TGG | - | chr4_4:3406427-3406446 | Msa0664410:CDS | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | + | chr4_4:3406693-3406712 | None:intergenic | 20.0% |
| !! | AAACGAATAAATCAAAAAGA+AGG | + | chr4_4:3406925-3406944 | None:intergenic | 20.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | + | chr4_4:3406477-3406496 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | + | chr4_4:3406784-3406803 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | - | chr4_4:3406950-3406969 | Msa0664410:intron | 25.0% |
| !! | TTTTCAGAATAATAATTCCG+AGG | - | chr4_4:3407126-3407145 | Msa0664410:CDS | 25.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | + | chr4_4:3406477-3406496 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | + | chr4_4:3406784-3406803 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | - | chr4_4:3406950-3406969 | Msa0664410:intron | 25.0% |
| !! | TTTTCAGAATAATAATTCCG+AGG | - | chr4_4:3407126-3407145 | Msa0664410:CDS | 25.0% |
| !!! | TGGCTCATTTTTTATCAAGA+GGG | - | chr4_4:3406384-3406403 | Msa0664410:intron | 30.0% |
| !! | ATATATTATGGTTGGCTTGA+TGG | - | chr4_4:3406435-3406454 | Msa0664410:CDS | 30.0% |
| AATTTCAACCTACACTGAAA+TGG | - | chr4_4:3406487-3406506 | Msa0664410:intron | 30.0% | |
| AAAAGATAGCAATTGACATG+AGG | + | chr4_4:3406663-3406682 | None:intergenic | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | - | chr4_4:3406720-3406739 | Msa0664410:intron | 30.0% | |
| !! | GGACCTTTTCGATTATTTTT+CGG | + | chr4_4:3406726-3406745 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | + | chr4_4:3406853-3406872 | None:intergenic | 30.0% |
| CATTCAACTTGATTCAGATT+TGG | - | chr4_4:3406851-3406870 | Msa0664410:CDS | 30.0% | |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | - | chr4_4:3406949-3406968 | Msa0664410:intron | 30.0% |
| TTTAATGGAGAATTATGTGC+CGG | + | chr4_4:3407010-3407029 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | - | chr4_4:3407018-3407037 | Msa0664410:intron | 30.0% | |
| ! | TCAACCTCATTCTTGTTTAA+TGG | + | chr4_4:3407025-3407044 | None:intergenic | 30.0% |
| !!! | TGGCTCATTTTTTATCAAGA+GGG | - | chr4_4:3406384-3406403 | Msa0664410:intron | 30.0% |
| !! | ATATATTATGGTTGGCTTGA+TGG | - | chr4_4:3406435-3406454 | Msa0664410:CDS | 30.0% |
| AATTTCAACCTACACTGAAA+TGG | - | chr4_4:3406487-3406506 | Msa0664410:intron | 30.0% | |
| AAAAGATAGCAATTGACATG+AGG | + | chr4_4:3406663-3406682 | None:intergenic | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | - | chr4_4:3406720-3406739 | Msa0664410:intron | 30.0% | |
| !! | GGACCTTTTCGATTATTTTT+CGG | + | chr4_4:3406726-3406745 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | + | chr4_4:3406853-3406872 | None:intergenic | 30.0% |
| CATTCAACTTGATTCAGATT+TGG | - | chr4_4:3406851-3406870 | Msa0664410:CDS | 30.0% | |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | - | chr4_4:3406949-3406968 | Msa0664410:intron | 30.0% |
| TTTAATGGAGAATTATGTGC+CGG | + | chr4_4:3407010-3407029 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | - | chr4_4:3407018-3407037 | Msa0664410:intron | 30.0% | |
| ! | TCAACCTCATTCTTGTTTAA+TGG | + | chr4_4:3407025-3407044 | None:intergenic | 30.0% |
| GCATCAGCTGAAATAAATTG+CGG | - | chr4_4:3406297-3406316 | Msa0664410:intron | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | - | chr4_4:3406309-3406328 | Msa0664410:intron | 35.0% | |
| !!! | CTGGCTCATTTTTTATCAAG+AGG | - | chr4_4:3406383-3406402 | Msa0664410:intron | 35.0% |
| AAGAAAGACCATTTCAGTGT+AGG | + | chr4_4:3406498-3406517 | None:intergenic | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | - | chr4_4:3406516-3406535 | Msa0664410:intron | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | - | chr4_4:3406623-3406642 | Msa0664410:intron | 35.0% | |
| TGTGGGCAAATAAGGTAAAT+GGG | - | chr4_4:3406624-3406643 | Msa0664410:intron | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | + | chr4_4:3406833-3406852 | None:intergenic | 35.0% | |
| GAAGATCTAAGTTCCTATGT+TGG | + | chr4_4:3407088-3407107 | None:intergenic | 35.0% | |
| GCATCAGCTGAAATAAATTG+CGG | - | chr4_4:3406297-3406316 | Msa0664410:intron | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | - | chr4_4:3406309-3406328 | Msa0664410:intron | 35.0% | |
| !!! | CTGGCTCATTTTTTATCAAG+AGG | - | chr4_4:3406383-3406402 | Msa0664410:intron | 35.0% |
| AAGAAAGACCATTTCAGTGT+AGG | + | chr4_4:3406498-3406517 | None:intergenic | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | - | chr4_4:3406516-3406535 | Msa0664410:intron | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | - | chr4_4:3406623-3406642 | Msa0664410:intron | 35.0% | |
| TGTGGGCAAATAAGGTAAAT+GGG | - | chr4_4:3406624-3406643 | Msa0664410:intron | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | + | chr4_4:3406833-3406852 | None:intergenic | 35.0% | |
| GAAGATCTAAGTTCCTATGT+TGG | + | chr4_4:3407088-3407107 | None:intergenic | 35.0% | |
| TGGACTTGGCAGATGTAAAT+TGG | + | chr4_4:3406263-3406282 | None:intergenic | 40.0% | |
| GGTTTGACGGTAGACAATAA+TGG | - | chr4_4:3406330-3406349 | Msa0664410:intron | 40.0% | |
| !! | TTACACGGTATCTTGCTGTT+GGG | + | chr4_4:3406358-3406377 | None:intergenic | 40.0% |
| AAGATACCGTGTAAGTTCAC+TGG | - | chr4_4:3406364-3406383 | Msa0664410:intron | 40.0% | |
| AATGAGCCAGTGAACTTACA+CGG | + | chr4_4:3406373-3406392 | None:intergenic | 40.0% | |
| CAATGCTTGTGGACTTATGT+GGG | - | chr4_4:3406607-3406626 | Msa0664410:intron | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | - | chr4_4:3406616-3406635 | Msa0664410:intron | 40.0% | |
| ! | TTCAGATTTGGCTTCTCGAA+TGG | - | chr4_4:3406863-3406882 | Msa0664410:CDS | 40.0% |
| ! | AGGCACAGTTGTTTGTTGAA+AGG | + | chr4_4:3406905-3406924 | None:intergenic | 40.0% |
| GATGTTTCTCTTGCCAACAT+AGG | - | chr4_4:3407072-3407091 | Msa0664410:CDS | 40.0% | |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | + | chr4_4:3407152-3407171 | None:intergenic | 40.0% |
| TGGACTTGGCAGATGTAAAT+TGG | + | chr4_4:3406263-3406282 | None:intergenic | 40.0% | |
| GGTTTGACGGTAGACAATAA+TGG | - | chr4_4:3406330-3406349 | Msa0664410:intron | 40.0% | |
| !! | TTACACGGTATCTTGCTGTT+GGG | + | chr4_4:3406358-3406377 | None:intergenic | 40.0% |
| AAGATACCGTGTAAGTTCAC+TGG | - | chr4_4:3406364-3406383 | Msa0664410:intron | 40.0% | |
| AATGAGCCAGTGAACTTACA+CGG | + | chr4_4:3406373-3406392 | None:intergenic | 40.0% | |
| CAATGCTTGTGGACTTATGT+GGG | - | chr4_4:3406607-3406626 | Msa0664410:intron | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | - | chr4_4:3406616-3406635 | Msa0664410:intron | 40.0% | |
| ! | TTCAGATTTGGCTTCTCGAA+TGG | - | chr4_4:3406863-3406882 | Msa0664410:CDS | 40.0% |
| ! | AGGCACAGTTGTTTGTTGAA+AGG | + | chr4_4:3406905-3406924 | None:intergenic | 40.0% |
| GATGTTTCTCTTGCCAACAT+AGG | - | chr4_4:3407072-3407091 | Msa0664410:CDS | 40.0% | |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | + | chr4_4:3407152-3407171 | None:intergenic | 40.0% |
| AGACTCATCAGGATTGGACT+TGG | + | chr4_4:3406277-3406296 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAGGAT+TGG | + | chr4_4:3406283-3406302 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | - | chr4_4:3406317-3406336 | Msa0664410:intron | 45.0% | |
| ! | CTTACACGGTATCTTGCTGT+TGG | + | chr4_4:3406359-3406378 | None:intergenic | 45.0% |
| ! | CATGTCAGTTGTAGGCATTG+TGG | - | chr4_4:3406524-3406543 | Msa0664410:intron | 45.0% |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_4:3406603-3406622 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | + | chr4_4:3406604-3406623 | None:intergenic | 45.0% |
| GCAATGCTTGTGGACTTATG+TGG | - | chr4_4:3406606-3406625 | Msa0664410:intron | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | - | chr4_4:3406733-3406752 | Msa0664410:intron | 45.0% | |
| AGACTCATCAGGATTGGACT+TGG | + | chr4_4:3406277-3406296 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAGGAT+TGG | + | chr4_4:3406283-3406302 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | - | chr4_4:3406317-3406336 | Msa0664410:intron | 45.0% | |
| ! | CTTACACGGTATCTTGCTGT+TGG | + | chr4_4:3406359-3406378 | None:intergenic | 45.0% |
| ! | CATGTCAGTTGTAGGCATTG+TGG | - | chr4_4:3406524-3406543 | Msa0664410:intron | 45.0% |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_4:3406603-3406622 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | + | chr4_4:3406604-3406623 | None:intergenic | 45.0% |
| GCAATGCTTGTGGACTTATG+TGG | - | chr4_4:3406606-3406625 | Msa0664410:intron | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | - | chr4_4:3406733-3406752 | Msa0664410:intron | 45.0% | |
| TCAGCTGATGCAGACTCATC+AGG | + | chr4_4:3406288-3406307 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_4:3406555-3406574 | Msa0664410:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_4:3406596-3406615 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_4:3406596-3406615 | Msa0664410:intron | 50.0% | |
| GCAAGGTTGCTGTCCTTGAT+AGG | + | chr4_4:3406988-3407007 | None:intergenic | 50.0% | |
| ATCAAGGACAGCAACCTTGC+CGG | - | chr4_4:3406988-3407007 | Msa0664410:intron | 50.0% | |
| ! | TGGAGAATTATGTGCCGGCA+AGG | + | chr4_4:3407005-3407024 | None:intergenic | 50.0% |
| !! | AAGCACTGTCTGATTGGCCT+CGG | + | chr4_4:3407146-3407165 | None:intergenic | 50.0% |
| TCAGCTGATGCAGACTCATC+AGG | + | chr4_4:3406288-3406307 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_4:3406555-3406574 | Msa0664410:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_4:3406596-3406615 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_4:3406596-3406615 | Msa0664410:intron | 50.0% | |
| GCAAGGTTGCTGTCCTTGAT+AGG | + | chr4_4:3406988-3407007 | None:intergenic | 50.0% | |
| ATCAAGGACAGCAACCTTGC+CGG | - | chr4_4:3406988-3407007 | Msa0664410:intron | 50.0% | |
| ! | TGGAGAATTATGTGCCGGCA+AGG | + | chr4_4:3407005-3407024 | None:intergenic | 50.0% |
| !! | AAGCACTGTCTGATTGGCCT+CGG | + | chr4_4:3407146-3407165 | None:intergenic | 50.0% |
| ! | AGGTCCATGACTGTGGACTG+TGG | - | chr4_4:3406740-3406759 | Msa0664410:intron | 55.0% |
| CAGTCCACAGTCCACAGTCA+TGG | + | chr4_4:3406747-3406766 | None:intergenic | 55.0% | |
| ! | TGACTGTGGACTGTGGACTG+TGG | - | chr4_4:3406747-3406766 | Msa0664410:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | - | chr4_4:3406960-3406979 | Msa0664410:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | - | chr4_4:3406961-3406980 | Msa0664410:intron | 55.0% |
| GAGCGCTTAGGGACCTATCA+AGG | - | chr4_4:3406972-3406991 | Msa0664410:intron | 55.0% | |
| ! | AGGTCCATGACTGTGGACTG+TGG | - | chr4_4:3406740-3406759 | Msa0664410:intron | 55.0% |
| CAGTCCACAGTCCACAGTCA+TGG | + | chr4_4:3406747-3406766 | None:intergenic | 55.0% | |
| ! | TGACTGTGGACTGTGGACTG+TGG | - | chr4_4:3406747-3406766 | Msa0664410:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | - | chr4_4:3406960-3406979 | Msa0664410:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | - | chr4_4:3406961-3406980 | Msa0664410:intron | 55.0% |
| GAGCGCTTAGGGACCTATCA+AGG | - | chr4_4:3406972-3406991 | Msa0664410:intron | 55.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_4:3406569-3406588 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_4:3406569-3406588 | Msa0664410:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_4:3406570-3406589 | Msa0664410:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_4:3406587-3406606 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_4:3406569-3406588 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_4:3406569-3406588 | Msa0664410:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_4:3406570-3406589 | Msa0664410:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_4:3406587-3406606 | None:intergenic | 60.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_4:3406560-3406579 | Msa0664410:intron | 65.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | + | chr4_4:3406968-3406987 | None:intergenic | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_4:3406560-3406579 | Msa0664410:intron | 65.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | + | chr4_4:3406968-3406987 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3406243 | 3407189 | 3406243 | ID=Msa0664410;Name=Msa0664410 |
| chr4_4 | mRNA | 3406243 | 3407189 | 3406243 | ID=Msa0664410-mRNA-1;Parent=Msa0664410;Name=Msa0664410-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.5|1|0.75|4|0|120 |
| chr4_4 | exon | 3407059 | 3407189 | 3407059 | ID=Msa0664410-mRNA-1:exon:1137;Parent=Msa0664410-mRNA-1 |
| chr4_4 | exon | 3406795 | 3406900 | 3406795 | ID=Msa0664410-mRNA-1:exon:1136;Parent=Msa0664410-mRNA-1 |
| chr4_4 | exon | 3406393 | 3406461 | 3406393 | ID=Msa0664410-mRNA-1:exon:1135;Parent=Msa0664410-mRNA-1 |
| chr4_4 | exon | 3406243 | 3406299 | 3406243 | ID=Msa0664410-mRNA-1:exon:1134;Parent=Msa0664410-mRNA-1 |
| chr4_4 | CDS | 3407059 | 3407189 | 3407059 | ID=Msa0664410-mRNA-1:cds;Parent=Msa0664410-mRNA-1 |
| chr4_4 | CDS | 3406795 | 3406900 | 3406795 | ID=Msa0664410-mRNA-1:cds;Parent=Msa0664410-mRNA-1 |
| chr4_4 | CDS | 3406393 | 3406461 | 3406393 | ID=Msa0664410-mRNA-1:cds;Parent=Msa0664410-mRNA-1 |
| chr4_4 | CDS | 3406243 | 3406299 | 3406243 | ID=Msa0664410-mRNA-1:cds;Parent=Msa0664410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
