Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587630 | XP_013454680.1 | 95.758 | 165 | 6 | 1 | 1 | 165 | 1 | 164 | 3.25e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587630 | sp|O49816|LEA1_CICAR | 73.714 | 175 | 23 | 2 | 1 | 153 | 1 | 174 | 2.29e-75 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0268070 | Msa0587630 | 0.813300 | 2.744900e-51 | -8.615850e-47 |
| Msa0530790 | Msa0587630 | 0.990485 | 7.345065e-183 | -8.615850e-47 |
| Msa0587630 | Msa0665610 | 0.938909 | 3.079914e-99 | -8.615850e-47 |
| Msa0587630 | Msa1219790 | 0.806771 | 6.997063e-50 | -8.615850e-47 |
| Msa0587630 | Msa1267080 | 0.813545 | 2.423990e-51 | -8.615850e-47 |
| Msa0587630 | Msa1401550 | 0.803707 | 3.066311e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587630 | MtrunA17_Chr4g0003721 | 95.758 | 165 | 6 | 1 | 1 | 165 | 1 | 164 | 2.98e-100 | 285 |
| Msa0587630 | MtrunA17_Chr4g0003741 | 95.758 | 165 | 6 | 1 | 1 | 165 | 1 | 164 | 8.37e-100 | 284 |
| Msa0587630 | MtrunA17_Chr4g0003751 | 70.807 | 161 | 19 | 3 | 1 | 161 | 1 | 133 | 4.47e-68 | 202 |
| Msa0587630 | MtrunA17_Chr1g0168911 | 35.135 | 148 | 71 | 3 | 1 | 141 | 1 | 130 | 5.60e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587630 | AT1G52690.1 | 51.266 | 158 | 67 | 5 | 1 | 153 | 1 | 153 | 7.36e-38 | 127 |
| Msa0587630 | AT1G52690.2 | 51.266 | 158 | 67 | 5 | 1 | 153 | 1 | 153 | 7.36e-38 | 127 |
| Msa0587630 | AT3G15670.1 | 43.564 | 202 | 62 | 7 | 1 | 151 | 1 | 201 | 3.53e-32 | 115 |
| Msa0587630 | AT4G13560.1 | 46.392 | 97 | 48 | 1 | 46 | 142 | 15 | 107 | 6.84e-17 | 72.4 |
| Msa0587630 | AT4G13560.2 | 46.392 | 97 | 48 | 1 | 46 | 142 | 15 | 107 | 6.84e-17 | 72.4 |
Find 50 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTGGGCTGTTTGC+TGG | 0.217726 | 4_2:-9260751 | None:intergenic |
| TCCTGATTGGGCAGTTTCTT+TGG | 0.242344 | 4_2:-9260837 | None:intergenic |
| TTACTGCTTGGGCTGTTTGC+TGG | 0.254500 | 4_2:-9260718 | None:intergenic |
| CTGAGTTGTCCTTTCCTGAT+TGG | 0.261169 | 4_2:-9260850 | None:intergenic |
| GAGGCTGTTAAGAACACTTT+AGG | 0.327547 | 4_2:+9260929 | Msa0587630:CDS |
| AGCTTGACCAGTTGTGTCTT+GGG | 0.346499 | 4_2:-9260783 | None:intergenic |
| TAGCTTGACCAGTTGTGTCT+TGG | 0.346890 | 4_2:-9260784 | None:intergenic |
| TACTGCTTGGGCTGTTTGCT+GGG | 0.347910 | 4_2:-9260717 | None:intergenic |
| CACCTATGTTGCCCATCATC+TGG | 0.349304 | 4_2:-9260601 | None:intergenic |
| CTGTCTTCTCCTTAGCTGCT+TGG | 0.355767 | 4_2:-9260664 | None:intergenic |
| TGAGTTGTCCTTTCCTGATT+GGG | 0.358541 | 4_2:-9260849 | None:intergenic |
| GGGCAGTTTCTTTGGTAGCC+TGG | 0.369272 | 4_2:-9260829 | None:intergenic |
| TGTCTTCTCCTTAGCTGCTT+GGG | 0.380418 | 4_2:-9260663 | None:intergenic |
| TGTTGCTTGGGCTGTTTGCT+GGG | 0.405323 | 4_2:-9260750 | None:intergenic |
| ACAGACAGGTGAAAAGGTTA+AGG | 0.409547 | 4_2:+9260886 | Msa0587630:CDS |
| CAGCTTTGTAACTTTGGTCG+TGG | 0.418960 | 4_2:-9260047 | None:intergenic |
| ACCAAAGAAACTGCCCAATC+AGG | 0.426421 | 4_2:+9260836 | Msa0587630:CDS |
| TTGTACCTCAGTTCTGCCCA+TGG | 0.456664 | 4_2:-9260076 | None:intergenic |
| GCAAACAGCCCAAGCAGTAA+AGG | 0.474093 | 4_2:+9260721 | Msa0587630:CDS |
| GGAAAAGTCAAACCAGATGA+TGG | 0.474776 | 4_2:+9260589 | Msa0587630:intron |
| AGCCCAAGCTGCAAAGGAAA+AGG | 0.475347 | 4_2:+9260628 | Msa0587630:CDS |
| TCTCACCAGCTTTGTAACTT+TGG | 0.482660 | 4_2:-9260053 | None:intergenic |
| TTTGCAACAGACAGGTGAAA+AGG | 0.484901 | 4_2:+9260880 | Msa0587630:CDS |
| TCAGGAAAGGACAACTCAGC+TGG | 0.488267 | 4_2:+9260854 | Msa0587630:CDS |
| CAGACAGGTGAAAAGGTTAA+GGG | 0.501139 | 4_2:+9260887 | Msa0587630:CDS |
| GATAAAACCCAAGACACAAC+TGG | 0.501444 | 4_2:+9260776 | Msa0587630:CDS |
| AGCTTTGTAACTTTGGTCGT+GGG | 0.503041 | 4_2:-9260046 | None:intergenic |
| ACAGACAGCCCAAGCTGCAA+AGG | 0.520144 | 4_2:+9260688 | Msa0587630:CDS |
| ACAAACAGCCCAAGCAGCTA+AGG | 0.522462 | 4_2:+9260655 | Msa0587630:CDS |
| AGGTGAAAAGGTTAAGGGTA+TGG | 0.530822 | 4_2:+9260892 | Msa0587630:CDS |
| TAGAGACAAGGGTTATGAGA+TGG | 0.536052 | 4_2:+9260805 | Msa0587630:CDS |
| CAAGCAGCTAAGGAGAAGAC+AGG | 0.539522 | 4_2:+9260665 | Msa0587630:CDS |
| AGAGACAAGGGTTATGAGAT+GGG | 0.559398 | 4_2:+9260806 | Msa0587630:CDS |
| GCAAACAGCCCAAGCAACAA+AGG | 0.560474 | 4_2:+9260754 | Msa0587630:CDS |
| TGACAAAGCCCAAGCTGCAA+AGG | 0.561029 | 4_2:+9260622 | Msa0587630:CDS |
| CACGACCAAAGTTACAAAGC+TGG | 0.573882 | 4_2:+9260048 | Msa0587630:CDS |
| GAAAAGTCAAACCAGATGAT+GGG | 0.578776 | 4_2:+9260590 | Msa0587630:CDS |
| CAAGGGTTATGAGATGGGCC+AGG | 0.585538 | 4_2:+9260811 | Msa0587630:CDS |
| TCAATCAACAACGTTACGAC+GGG | 0.588754 | 4_2:-9261011 | None:intergenic |
| TACAAAGCTGGTGAGACCAT+GGG | 0.589989 | 4_2:+9260060 | Msa0587630:CDS |
| AACCAGATGATGGGCAACAT+AGG | 0.591141 | 4_2:+9260599 | Msa0587630:CDS |
| CTCAATCAACAACGTTACGA+CGG | 0.597111 | 4_2:-9261012 | None:intergenic |
| TTACAAAGCTGGTGAGACCA+TGG | 0.601289 | 4_2:+9260059 | Msa0587630:CDS |
| AGAAACTGCCCAATCAGGAA+AGG | 0.617206 | 4_2:+9260841 | Msa0587630:CDS |
| AACTGGTCAAGCTAGAGACA+AGG | 0.623107 | 4_2:+9260793 | Msa0587630:CDS |
| AAGGTTAAGGGTATGGCACA+AGG | 0.628466 | 4_2:+9260899 | Msa0587630:CDS |
| TGAAAATCAAGATGAAGACA+AGG | 0.635276 | 4_2:+9260958 | Msa0587630:CDS |
| TATGGCACAAGGTGCTACTG+AGG | 0.642781 | 4_2:+9260910 | Msa0587630:CDS |
| TGAGACCATGGGCAGAACTG+AGG | 0.684250 | 4_2:+9260071 | Msa0587630:CDS |
| ACTGGTCAAGCTAGAGACAA+GGG | 0.688619 | 4_2:+9260794 | Msa0587630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATGTATATTAACAAAA+AGG | - | chr4_2:9260240-9260259 | None:intergenic | 10.0% |
| !!! | TATATTTATAGTTGAATTTT+TGG | + | chr4_2:9260530-9260549 | Msa0587630:intron | 10.0% |
| !! | TATTATGTATATTAACAAAA+AGG | - | chr4_2:9260240-9260259 | None:intergenic | 10.0% |
| !!! | TATATTTATAGTTGAATTTT+TGG | + | chr4_2:9260530-9260549 | Msa0587630:intron | 10.0% |
| !! | AATAAATCTTGAGTAAAAAA+TGG | - | chr4_2:9260160-9260179 | None:intergenic | 15.0% |
| !!! | ATATACATAATAGTTTTTTG+TGG | + | chr4_2:9260248-9260267 | Msa0587630:intron | 15.0% |
| !!! | TATACATAATAGTTTTTTGT+GGG | + | chr4_2:9260249-9260268 | Msa0587630:intron | 15.0% |
| !!! | TATAAATTAGGTAAATTTTG+TGG | - | chr4_2:9260479-9260498 | None:intergenic | 15.0% |
| !! | ATTTACCTAATTTATATTGA+TGG | + | chr4_2:9260483-9260502 | Msa0587630:intron | 15.0% |
| !! | AATAAATCTTGAGTAAAAAA+TGG | - | chr4_2:9260160-9260179 | None:intergenic | 15.0% |
| !!! | ATATACATAATAGTTTTTTG+TGG | + | chr4_2:9260248-9260267 | Msa0587630:intron | 15.0% |
| !!! | TATACATAATAGTTTTTTGT+GGG | + | chr4_2:9260249-9260268 | Msa0587630:intron | 15.0% |
| !!! | TATAAATTAGGTAAATTTTG+TGG | - | chr4_2:9260479-9260498 | None:intergenic | 15.0% |
| !! | ATTTACCTAATTTATATTGA+TGG | + | chr4_2:9260483-9260502 | Msa0587630:intron | 15.0% |
| !!! | TCAAGATTTATTATCTTTTG+AGG | + | chr4_2:9260168-9260187 | Msa0587630:intron | 20.0% |
| !!! | CAAGATTTATTATCTTTTGA+GGG | + | chr4_2:9260169-9260188 | Msa0587630:intron | 20.0% |
| !!! | AAGATTTATTATCTTTTGAG+GGG | + | chr4_2:9260170-9260189 | Msa0587630:intron | 20.0% |
| !!! | AACATGCTCAATTTTTTTTT+CGG | + | chr4_2:9260353-9260372 | Msa0587630:intron | 20.0% |
| !! | AATAAAATAGATTATGTCTC+CGG | - | chr4_2:9260435-9260454 | None:intergenic | 20.0% |
| !! | CATTACCATCAATATAAATT+AGG | - | chr4_2:9260491-9260510 | None:intergenic | 20.0% |
| !! | TCAACTATAAATATAGTACT+TGG | - | chr4_2:9260525-9260544 | None:intergenic | 20.0% |
| !!! | TCAAGATTTATTATCTTTTG+AGG | + | chr4_2:9260168-9260187 | Msa0587630:intron | 20.0% |
| !!! | CAAGATTTATTATCTTTTGA+GGG | + | chr4_2:9260169-9260188 | Msa0587630:intron | 20.0% |
| !!! | AAGATTTATTATCTTTTGAG+GGG | + | chr4_2:9260170-9260189 | Msa0587630:intron | 20.0% |
| !!! | AACATGCTCAATTTTTTTTT+CGG | + | chr4_2:9260353-9260372 | Msa0587630:intron | 20.0% |
| !! | AATAAAATAGATTATGTCTC+CGG | - | chr4_2:9260435-9260454 | None:intergenic | 20.0% |
| !! | CATTACCATCAATATAAATT+AGG | - | chr4_2:9260491-9260510 | None:intergenic | 20.0% |
| !! | TCAACTATAAATATAGTACT+TGG | - | chr4_2:9260525-9260544 | None:intergenic | 20.0% |
| ! | GAGTAAAAAATGGAAGAATT+AGG | - | chr4_2:9260150-9260169 | None:intergenic | 25.0% |
| ! | AAAGTGTGTTAGATATATGT+TGG | - | chr4_2:9260331-9260350 | None:intergenic | 25.0% |
| ! | GAAAATGTATAGTATAAGCA+GGG | - | chr4_2:9260395-9260414 | None:intergenic | 25.0% |
| ! | AGAAAATGTATAGTATAAGC+AGG | - | chr4_2:9260396-9260415 | None:intergenic | 25.0% |
| ! | ATAAAATAGATTATGTCTCC+GGG | - | chr4_2:9260434-9260453 | None:intergenic | 25.0% |
| !! | TTAACATAACTGTGATTTGT+TGG | + | chr4_2:9260554-9260573 | Msa0587630:intron | 25.0% |
| !!! | TTGTTGTTTTTGTTGTGAAA+TGG | - | chr4_2:9260985-9261004 | None:intergenic | 25.0% |
| ! | GAGTAAAAAATGGAAGAATT+AGG | - | chr4_2:9260150-9260169 | None:intergenic | 25.0% |
| ! | AAAGTGTGTTAGATATATGT+TGG | - | chr4_2:9260331-9260350 | None:intergenic | 25.0% |
| ! | GAAAATGTATAGTATAAGCA+GGG | - | chr4_2:9260395-9260414 | None:intergenic | 25.0% |
| ! | AGAAAATGTATAGTATAAGC+AGG | - | chr4_2:9260396-9260415 | None:intergenic | 25.0% |
| ! | ATAAAATAGATTATGTCTCC+GGG | - | chr4_2:9260434-9260453 | None:intergenic | 25.0% |
| !! | TTAACATAACTGTGATTTGT+TGG | + | chr4_2:9260554-9260573 | Msa0587630:intron | 25.0% |
| !!! | TTGTTGTTTTTGTTGTGAAA+TGG | - | chr4_2:9260985-9261004 | None:intergenic | 25.0% |
| TGAAAATCAAGATGAAGACA+AGG | + | chr4_2:9260958-9260977 | Msa0587630:CDS | 30.0% | |
| TGAAAATCAAGATGAAGACA+AGG | + | chr4_2:9260958-9260977 | Msa0587630:CDS | 30.0% | |
| GAAAAGTCAAACCAGATGAT+GGG | + | chr4_2:9260590-9260609 | Msa0587630:CDS | 35.0% | |
| !! | GGTTTTATCCTTTGTTGCTT+GGG | - | chr4_2:9260765-9260784 | None:intergenic | 35.0% |
| GAAAAGTCAAACCAGATGAT+GGG | + | chr4_2:9260590-9260609 | Msa0587630:CDS | 35.0% | |
| !! | GGTTTTATCCTTTGTTGCTT+GGG | - | chr4_2:9260765-9260784 | None:intergenic | 35.0% |
| ! | AGCTTTGTAACTTTGGTCGT+GGG | - | chr4_2:9260049-9260068 | None:intergenic | 40.0% |
| ! | TCTCACCAGCTTTGTAACTT+TGG | - | chr4_2:9260056-9260075 | None:intergenic | 40.0% |
| TGTATAGTATAAGCAGGGTC+TGG | - | chr4_2:9260390-9260409 | None:intergenic | 40.0% | |
| TCTCTTACTAATGAGCTACC+CGG | + | chr4_2:9260413-9260432 | Msa0587630:intron | 40.0% | |
| ! | ATTTGTTGGATGTGTTGACC+AGG | + | chr4_2:9260568-9260587 | Msa0587630:intron | 40.0% |
| !! | TCATCTGGTTTGACTTTTCC+TGG | - | chr4_2:9260589-9260608 | None:intergenic | 40.0% |
| GGAAAAGTCAAACCAGATGA+TGG | + | chr4_2:9260589-9260608 | Msa0587630:intron | 40.0% | |
| !! | GGTTTTGTCCTTTACTGCTT+GGG | - | chr4_2:9260732-9260751 | None:intergenic | 40.0% |
| !! | GGGTTTTATCCTTTGTTGCT+TGG | - | chr4_2:9260766-9260785 | None:intergenic | 40.0% |
| GATAAAACCCAAGACACAAC+TGG | + | chr4_2:9260776-9260795 | Msa0587630:CDS | 40.0% | |
| TAGAGACAAGGGTTATGAGA+TGG | + | chr4_2:9260805-9260824 | Msa0587630:CDS | 40.0% | |
| AGAGACAAGGGTTATGAGAT+GGG | + | chr4_2:9260806-9260825 | Msa0587630:CDS | 40.0% | |
| TGAGTTGTCCTTTCCTGATT+GGG | - | chr4_2:9260852-9260871 | None:intergenic | 40.0% | |
| TTTGCAACAGACAGGTGAAA+AGG | + | chr4_2:9260880-9260899 | Msa0587630:CDS | 40.0% | |
| ACAGACAGGTGAAAAGGTTA+AGG | + | chr4_2:9260886-9260905 | Msa0587630:CDS | 40.0% | |
| CAGACAGGTGAAAAGGTTAA+GGG | + | chr4_2:9260887-9260906 | Msa0587630:CDS | 40.0% | |
| AGGTGAAAAGGTTAAGGGTA+TGG | + | chr4_2:9260892-9260911 | Msa0587630:CDS | 40.0% | |
| GAGGCTGTTAAGAACACTTT+AGG | + | chr4_2:9260929-9260948 | Msa0587630:CDS | 40.0% | |
| TCAATCAACAACGTTACGAC+GGG | - | chr4_2:9261014-9261033 | None:intergenic | 40.0% | |
| ! | AGCTTTGTAACTTTGGTCGT+GGG | - | chr4_2:9260049-9260068 | None:intergenic | 40.0% |
| ! | TCTCACCAGCTTTGTAACTT+TGG | - | chr4_2:9260056-9260075 | None:intergenic | 40.0% |
| TGTATAGTATAAGCAGGGTC+TGG | - | chr4_2:9260390-9260409 | None:intergenic | 40.0% | |
| TCTCTTACTAATGAGCTACC+CGG | + | chr4_2:9260413-9260432 | Msa0587630:intron | 40.0% | |
| ! | ATTTGTTGGATGTGTTGACC+AGG | + | chr4_2:9260568-9260587 | Msa0587630:intron | 40.0% |
| !! | TCATCTGGTTTGACTTTTCC+TGG | - | chr4_2:9260589-9260608 | None:intergenic | 40.0% |
| GGAAAAGTCAAACCAGATGA+TGG | + | chr4_2:9260589-9260608 | Msa0587630:intron | 40.0% | |
| !! | GGTTTTGTCCTTTACTGCTT+GGG | - | chr4_2:9260732-9260751 | None:intergenic | 40.0% |
| !! | GGGTTTTATCCTTTGTTGCT+TGG | - | chr4_2:9260766-9260785 | None:intergenic | 40.0% |
| GATAAAACCCAAGACACAAC+TGG | + | chr4_2:9260776-9260795 | Msa0587630:CDS | 40.0% | |
| TAGAGACAAGGGTTATGAGA+TGG | + | chr4_2:9260805-9260824 | Msa0587630:CDS | 40.0% | |
| AGAGACAAGGGTTATGAGAT+GGG | + | chr4_2:9260806-9260825 | Msa0587630:CDS | 40.0% | |
| TGAGTTGTCCTTTCCTGATT+GGG | - | chr4_2:9260852-9260871 | None:intergenic | 40.0% | |
| TTTGCAACAGACAGGTGAAA+AGG | + | chr4_2:9260880-9260899 | Msa0587630:CDS | 40.0% | |
| ACAGACAGGTGAAAAGGTTA+AGG | + | chr4_2:9260886-9260905 | Msa0587630:CDS | 40.0% | |
| CAGACAGGTGAAAAGGTTAA+GGG | + | chr4_2:9260887-9260906 | Msa0587630:CDS | 40.0% | |
| AGGTGAAAAGGTTAAGGGTA+TGG | + | chr4_2:9260892-9260911 | Msa0587630:CDS | 40.0% | |
| GAGGCTGTTAAGAACACTTT+AGG | + | chr4_2:9260929-9260948 | Msa0587630:CDS | 40.0% | |
| TCAATCAACAACGTTACGAC+GGG | - | chr4_2:9261014-9261033 | None:intergenic | 40.0% | |
| ! | CAGCTTTGTAACTTTGGTCG+TGG | - | chr4_2:9260050-9260069 | None:intergenic | 45.0% |
| CACGACCAAAGTTACAAAGC+TGG | + | chr4_2:9260048-9260067 | Msa0587630:CDS | 45.0% | |
| TTACAAAGCTGGTGAGACCA+TGG | + | chr4_2:9260059-9260078 | Msa0587630:CDS | 45.0% | |
| TACAAAGCTGGTGAGACCAT+GGG | + | chr4_2:9260060-9260079 | Msa0587630:CDS | 45.0% | |
| ! | TATAAGCAGGGTCTGGAGTT+CGG | - | chr4_2:9260383-9260402 | None:intergenic | 45.0% |
| !! | AACCAGATGATGGGCAACAT+AGG | + | chr4_2:9260599-9260618 | Msa0587630:CDS | 45.0% |
| ! | AGCCTTTTCCTTTGCAGCTT+GGG | - | chr4_2:9260633-9260652 | None:intergenic | 45.0% |
| TGTCTTCTCCTTAGCTGCTT+GGG | - | chr4_2:9260666-9260685 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCCTTTGCAGCTT+GGG | - | chr4_2:9260699-9260718 | None:intergenic | 45.0% |
| !! | GGGTTTTGTCCTTTACTGCT+TGG | - | chr4_2:9260733-9260752 | None:intergenic | 45.0% |
| AGCTTGACCAGTTGTGTCTT+GGG | - | chr4_2:9260786-9260805 | None:intergenic | 45.0% | |
| TAGCTTGACCAGTTGTGTCT+TGG | - | chr4_2:9260787-9260806 | None:intergenic | 45.0% | |
| AACTGGTCAAGCTAGAGACA+AGG | + | chr4_2:9260793-9260812 | Msa0587630:CDS | 45.0% | |
| ACTGGTCAAGCTAGAGACAA+GGG | + | chr4_2:9260794-9260813 | Msa0587630:CDS | 45.0% | |
| ACCAAAGAAACTGCCCAATC+AGG | + | chr4_2:9260836-9260855 | Msa0587630:CDS | 45.0% | |
| TCCTGATTGGGCAGTTTCTT+TGG | - | chr4_2:9260840-9260859 | None:intergenic | 45.0% | |
| AGAAACTGCCCAATCAGGAA+AGG | + | chr4_2:9260841-9260860 | Msa0587630:CDS | 45.0% | |
| CTGAGTTGTCCTTTCCTGAT+TGG | - | chr4_2:9260853-9260872 | None:intergenic | 45.0% | |
| ! | GCTGGATTTTTGCAACAGAC+AGG | + | chr4_2:9260872-9260891 | Msa0587630:CDS | 45.0% |
| ! | AAGGTTAAGGGTATGGCACA+AGG | + | chr4_2:9260899-9260918 | Msa0587630:CDS | 45.0% |
| ! | CAGCTTTGTAACTTTGGTCG+TGG | - | chr4_2:9260050-9260069 | None:intergenic | 45.0% |
| CACGACCAAAGTTACAAAGC+TGG | + | chr4_2:9260048-9260067 | Msa0587630:CDS | 45.0% | |
| TTACAAAGCTGGTGAGACCA+TGG | + | chr4_2:9260059-9260078 | Msa0587630:CDS | 45.0% | |
| TACAAAGCTGGTGAGACCAT+GGG | + | chr4_2:9260060-9260079 | Msa0587630:CDS | 45.0% | |
| ! | TATAAGCAGGGTCTGGAGTT+CGG | - | chr4_2:9260383-9260402 | None:intergenic | 45.0% |
| !! | AACCAGATGATGGGCAACAT+AGG | + | chr4_2:9260599-9260618 | Msa0587630:CDS | 45.0% |
| ! | AGCCTTTTCCTTTGCAGCTT+GGG | - | chr4_2:9260633-9260652 | None:intergenic | 45.0% |
| TGTCTTCTCCTTAGCTGCTT+GGG | - | chr4_2:9260666-9260685 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCCTTTGCAGCTT+GGG | - | chr4_2:9260699-9260718 | None:intergenic | 45.0% |
| !! | GGGTTTTGTCCTTTACTGCT+TGG | - | chr4_2:9260733-9260752 | None:intergenic | 45.0% |
| AGCTTGACCAGTTGTGTCTT+GGG | - | chr4_2:9260786-9260805 | None:intergenic | 45.0% | |
| TAGCTTGACCAGTTGTGTCT+TGG | - | chr4_2:9260787-9260806 | None:intergenic | 45.0% | |
| AACTGGTCAAGCTAGAGACA+AGG | + | chr4_2:9260793-9260812 | Msa0587630:CDS | 45.0% | |
| ACTGGTCAAGCTAGAGACAA+GGG | + | chr4_2:9260794-9260813 | Msa0587630:CDS | 45.0% | |
| ACCAAAGAAACTGCCCAATC+AGG | + | chr4_2:9260836-9260855 | Msa0587630:CDS | 45.0% | |
| TCCTGATTGGGCAGTTTCTT+TGG | - | chr4_2:9260840-9260859 | None:intergenic | 45.0% | |
| AGAAACTGCCCAATCAGGAA+AGG | + | chr4_2:9260841-9260860 | Msa0587630:CDS | 45.0% | |
| CTGAGTTGTCCTTTCCTGAT+TGG | - | chr4_2:9260853-9260872 | None:intergenic | 45.0% | |
| ! | GCTGGATTTTTGCAACAGAC+AGG | + | chr4_2:9260872-9260891 | Msa0587630:CDS | 45.0% |
| ! | AAGGTTAAGGGTATGGCACA+AGG | + | chr4_2:9260899-9260918 | Msa0587630:CDS | 45.0% |
| TTGTACCTCAGTTCTGCCCA+TGG | - | chr4_2:9260079-9260098 | None:intergenic | 50.0% | |
| CACCTATGTTGCCCATCATC+TGG | - | chr4_2:9260604-9260623 | None:intergenic | 50.0% | |
| TGACAAAGCCCAAGCTGCAA+AGG | + | chr4_2:9260622-9260641 | Msa0587630:CDS | 50.0% | |
| AGCCCAAGCTGCAAAGGAAA+AGG | + | chr4_2:9260628-9260647 | Msa0587630:CDS | 50.0% | |
| ! | GAGCCTTTTCCTTTGCAGCT+TGG | - | chr4_2:9260634-9260653 | None:intergenic | 50.0% |
| ACAAACAGCCCAAGCAGCTA+AGG | + | chr4_2:9260655-9260674 | Msa0587630:CDS | 50.0% | |
| CTGTCTTCTCCTTAGCTGCT+TGG | - | chr4_2:9260667-9260686 | None:intergenic | 50.0% | |
| CAAGCAGCTAAGGAGAAGAC+AGG | + | chr4_2:9260665-9260684 | Msa0587630:CDS | 50.0% | |
| ! | GGGTTTTCTCCTTTGCAGCT+TGG | - | chr4_2:9260700-9260719 | None:intergenic | 50.0% |
| TACTGCTTGGGCTGTTTGCT+GGG | - | chr4_2:9260720-9260739 | None:intergenic | 50.0% | |
| TTACTGCTTGGGCTGTTTGC+TGG | - | chr4_2:9260721-9260740 | None:intergenic | 50.0% | |
| GCAAACAGCCCAAGCAGTAA+AGG | + | chr4_2:9260721-9260740 | Msa0587630:CDS | 50.0% | |
| ! | TGTTGCTTGGGCTGTTTGCT+GGG | - | chr4_2:9260753-9260772 | None:intergenic | 50.0% |
| ! | TTGTTGCTTGGGCTGTTTGC+TGG | - | chr4_2:9260754-9260773 | None:intergenic | 50.0% |
| GCAAACAGCCCAAGCAACAA+AGG | + | chr4_2:9260754-9260773 | Msa0587630:CDS | 50.0% | |
| TCAGGAAAGGACAACTCAGC+TGG | + | chr4_2:9260854-9260873 | Msa0587630:CDS | 50.0% | |
| !! | TATGGCACAAGGTGCTACTG+AGG | + | chr4_2:9260910-9260929 | Msa0587630:CDS | 50.0% |
| TTGTACCTCAGTTCTGCCCA+TGG | - | chr4_2:9260079-9260098 | None:intergenic | 50.0% | |
| CACCTATGTTGCCCATCATC+TGG | - | chr4_2:9260604-9260623 | None:intergenic | 50.0% | |
| TGACAAAGCCCAAGCTGCAA+AGG | + | chr4_2:9260622-9260641 | Msa0587630:CDS | 50.0% | |
| AGCCCAAGCTGCAAAGGAAA+AGG | + | chr4_2:9260628-9260647 | Msa0587630:CDS | 50.0% | |
| ! | GAGCCTTTTCCTTTGCAGCT+TGG | - | chr4_2:9260634-9260653 | None:intergenic | 50.0% |
| ACAAACAGCCCAAGCAGCTA+AGG | + | chr4_2:9260655-9260674 | Msa0587630:CDS | 50.0% | |
| CTGTCTTCTCCTTAGCTGCT+TGG | - | chr4_2:9260667-9260686 | None:intergenic | 50.0% | |
| CAAGCAGCTAAGGAGAAGAC+AGG | + | chr4_2:9260665-9260684 | Msa0587630:CDS | 50.0% | |
| ! | GGGTTTTCTCCTTTGCAGCT+TGG | - | chr4_2:9260700-9260719 | None:intergenic | 50.0% |
| TACTGCTTGGGCTGTTTGCT+GGG | - | chr4_2:9260720-9260739 | None:intergenic | 50.0% | |
| TTACTGCTTGGGCTGTTTGC+TGG | - | chr4_2:9260721-9260740 | None:intergenic | 50.0% | |
| GCAAACAGCCCAAGCAGTAA+AGG | + | chr4_2:9260721-9260740 | Msa0587630:CDS | 50.0% | |
| ! | TGTTGCTTGGGCTGTTTGCT+GGG | - | chr4_2:9260753-9260772 | None:intergenic | 50.0% |
| ! | TTGTTGCTTGGGCTGTTTGC+TGG | - | chr4_2:9260754-9260773 | None:intergenic | 50.0% |
| GCAAACAGCCCAAGCAACAA+AGG | + | chr4_2:9260754-9260773 | Msa0587630:CDS | 50.0% | |
| TCAGGAAAGGACAACTCAGC+TGG | + | chr4_2:9260854-9260873 | Msa0587630:CDS | 50.0% | |
| !! | TATGGCACAAGGTGCTACTG+AGG | + | chr4_2:9260910-9260929 | Msa0587630:CDS | 50.0% |
| TGAGACCATGGGCAGAACTG+AGG | + | chr4_2:9260071-9260090 | Msa0587630:CDS | 55.0% | |
| ACAGACAGCCCAAGCTGCAA+AGG | + | chr4_2:9260688-9260707 | Msa0587630:CDS | 55.0% | |
| CAAGGGTTATGAGATGGGCC+AGG | + | chr4_2:9260811-9260830 | Msa0587630:CDS | 55.0% | |
| ! | GGGCAGTTTCTTTGGTAGCC+TGG | - | chr4_2:9260832-9260851 | None:intergenic | 55.0% |
| TGAGACCATGGGCAGAACTG+AGG | + | chr4_2:9260071-9260090 | Msa0587630:CDS | 55.0% | |
| ACAGACAGCCCAAGCTGCAA+AGG | + | chr4_2:9260688-9260707 | Msa0587630:CDS | 55.0% | |
| CAAGGGTTATGAGATGGGCC+AGG | + | chr4_2:9260811-9260830 | Msa0587630:CDS | 55.0% | |
| ! | GGGCAGTTTCTTTGGTAGCC+TGG | - | chr4_2:9260832-9260851 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 9260039 | 9261033 | 9260039 | ID=Msa0587630;Name=Msa0587630 |
| chr4_2 | mRNA | 9260039 | 9261033 | 9260039 | ID=Msa0587630-mRNA-1;Parent=Msa0587630;Name=Msa0587630-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.5|1|1|2|0|165 |
| chr4_2 | exon | 9260039 | 9260092 | 9260039 | ID=Msa0587630-mRNA-1:exon:2532;Parent=Msa0587630-mRNA-1 |
| chr4_2 | exon | 9260590 | 9261033 | 9260590 | ID=Msa0587630-mRNA-1:exon:2533;Parent=Msa0587630-mRNA-1 |
| chr4_2 | CDS | 9260039 | 9260092 | 9260039 | ID=Msa0587630-mRNA-1:cds;Parent=Msa0587630-mRNA-1 |
| chr4_2 | CDS | 9260590 | 9261033 | 9260590 | ID=Msa0587630-mRNA-1:cds;Parent=Msa0587630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
