AlfalfaGEDB | Msa0665610

M. sativa cultivar zhongmu-4 / Msa0665610

KEGG: -
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665610	XP_013454680.1	94.578	166	7	1	1	166	1	164	2.93e-95	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665610	sp\|O49816\|LEA1_CICAR	72.727	176	24	2	1	154	1	174	2.04e-74	223

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665610	A0A072UH01	94.578	166	7	1	1	166	1	164	1.40e-95	283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0268070	Msa0665610	0.815311	9.863780e-52	-8.615850e-47
Msa0530790	Msa0665610	0.941387	4.544458e-101	-8.615850e-47
Msa0587630	Msa0665610	0.938909	3.079914e-99	-8.615850e-47
Msa0665610	Msa1085860	0.810113	1.354806e-50	-8.615850e-47
Msa0665610	Msa1219790	0.808805	2.585161e-50	-8.615850e-47
Msa0665610	Msa1267080	0.816448	5.502047e-52	-8.615850e-47
Msa0665610	Msa1401550	0.812784	3.561289e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665610	MtrunA17_Chr4g0003721	94.578	166	7	1	1	166	1	164	2.70e-99	283
Msa0665610	MtrunA17_Chr4g0003741	94.578	166	7	1	1	166	1	164	5.81e-99	282
Msa0665610	MtrunA17_Chr4g0003751	70.370	162	19	3	1	162	1	133	5.91e-68	202
Msa0665610	MtrunA17_Chr1g0168911	35.135	148	71	3	1	141	1	130	5.92e-13	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0665610	AT1G52690.1	50.943	159	67	5	1	154	1	153	1.39e-37	127
Msa0665610	AT1G52690.2	50.943	159	67	5	1	154	1	153	1.39e-37	127
Msa0665610	AT3G15670.1	43.842	203	61	7	1	152	1	201	2.40e-32	115
Msa0665610	AT4G13560.1	46.392	97	48	1	46	142	15	107	6.81e-17	72.4
Msa0665610	AT4G13560.2	46.392	97	48	1	46	142	15	107	6.81e-17	72.4

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Find 50 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAGAAGATGAAGACA+AGG	0.638128	4_4:-5230346	Msa0665610:CDS
AACCAGATGATGGGCAACAT+AGG	0.591141	4_4:-5230708	Msa0665610:CDS
AACTGGTCAAGCTAGAGACA+AGG	0.623107	4_4:-5230514	Msa0665610:CDS
AAGGTTAAGGGTATGGCACA+AGG	0.628466	4_4:-5230408	Msa0665610:CDS
ACAAACAGCCCAAGCAGCTA+AGG	0.522462	4_4:-5230652	Msa0665610:CDS
ACAGACAGCCCAAGCTGCAA+AGG	0.520144	4_4:-5230619	Msa0665610:CDS
ACAGACAGGTGAAAAGGTTA+AGG	0.409547	4_4:-5230421	Msa0665610:CDS
ACCAAAGAAACTGCCCAATC+AGG	0.426421	4_4:-5230471	Msa0665610:CDS
ACTGGTCAAGCTAGAGACAA+GGG	0.688619	4_4:-5230513	Msa0665610:CDS
AGAAACTGCCCAATCAGGAA+AGG	0.617206	4_4:-5230466	Msa0665610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATGTAAATGATCCTTG+AGG	-	chr4_4:5230455-5230474	Msa0665610:CDS	30.0%
TGAATGTAAATGATCCTTGA+GGG	-	chr4_4:5230456-5230475	Msa0665610:CDS	30.0%
AAATCAAGAAGATGAAGACA+AGG	-	chr4_4:5231223-5231242	Msa0665610:intron	30.0%
TTGAATGTAAATGATCCTTG+AGG	-	chr4_4:5230455-5230474	Msa0665610:CDS	30.0%
TGAATGTAAATGATCCTTGA+GGG	-	chr4_4:5230456-5230475	Msa0665610:CDS	30.0%
AAATCAAGAAGATGAAGACA+AGG	-	chr4_4:5231223-5231242	Msa0665610:intron	30.0%
GAATGTAAATGATCCTTGAG+GGG	-	chr4_4:5230457-5230476	Msa0665610:CDS	35.0%
GAAAAGTCAAACCAGATGAT+GGG	-	chr4_4:5230852-5230871	Msa0665610:intron	35.0%
GAATGTAAATGATCCTTGAG+GGG	-	chr4_4:5230457-5230476	Msa0665610:CDS	35.0%
GAAAAGTCAAACCAGATGAT+GGG	-	chr4_4:5230852-5230871	Msa0665610:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	5230293	5231298	5230293	ID=Msa0665610;Name=Msa0665610
chr4_4	mRNA	5230293	5231298	5230293	ID=Msa0665610-mRNA-1;Parent=Msa0665610;Name=Msa0665610-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|166
chr4_4	exon	5231245	5231298	5231245	ID=Msa0665610-mRNA-1:exon:1712;Parent=Msa0665610-mRNA-1
chr4_4	exon	5230293	5230739	5230293	ID=Msa0665610-mRNA-1:exon:1711;Parent=Msa0665610-mRNA-1
chr4_4	CDS	5231245	5231298	5231245	ID=Msa0665610-mRNA-1:cds;Parent=Msa0665610-mRNA-1
chr4_4	CDS	5230293	5230739	5230293	ID=Msa0665610-mRNA-1:cds;Parent=Msa0665610-mRNA-1

Gene Sequence

>Msa0665610

ATGGCATCCCACGACCAAAGTTACAAAGCTGGTGAAACCATGGGCAGAACTGAGGAAAAGTCAAACCAGATGATGGGCAACATAGGTGACAAAGCCCAAGCTGCAAAGGAAAAGGCTCAACAAACAGCCCAAGCAGCTAAGGAGAAGACAGGACAGACAGCCCAAGCTGCAAAGGAGAAAACCCAGCAAACAGCCCAAGCAGTAAAGGACAAAACCCAGCAAACAGCCCAAGCAACAAAGGATAAAACCCAAGACACAACTGGTCAAGCTAGAGACAAGGGTTATGAGATGGGCCAGGCTACCAAAGAAACTGCCCAATCAGGAAAGGACAACTCAGCTGGATTTTTGCAACAGACAGGTGAAAAGGTTAAGGGTATGGCACAAGGTGCTACTGAGGCTGTTAAGAACACTTTAGGAATGAATGAAAATCAAGAAGATGAAGACAAGGACCATTTCACAACAAAAACAACAACAACAACCCGTCGTAACGTTGTTGATTGA

Protein sequence

>Msa0665610

MASHDQSYKAGETMGRTEEKSNQMMGNIGDKAQAAKEKAQQTAQAAKEKTGQTAQAAKEKTQQTAQAVKDKTQQTAQATKDKTQDTTGQARDKGYEMGQATKETAQSGKDNSAGFLQQTGEKVKGMAQGATEAVKNTLGMNENQEDEDKDHFTTKTTTTTRRNVVD*