Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665610 | XP_013454680.1 | 94.578 | 166 | 7 | 1 | 1 | 166 | 1 | 164 | 2.93e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665610 | sp|O49816|LEA1_CICAR | 72.727 | 176 | 24 | 2 | 1 | 154 | 1 | 174 | 2.04e-74 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665610 | A0A072UH01 | 94.578 | 166 | 7 | 1 | 1 | 166 | 1 | 164 | 1.40e-95 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0665610 | Msa1085860 | 0.810113 | 1.354806e-50 | -8.615850e-47 |
| Msa0665610 | Msa1219790 | 0.808805 | 2.585161e-50 | -8.615850e-47 |
| Msa0665610 | Msa1267080 | 0.816448 | 5.502047e-52 | -8.615850e-47 |
| Msa0665610 | Msa1401550 | 0.812784 | 3.561289e-51 | -8.615850e-47 |
| Msa0268070 | Msa0665610 | 0.815311 | 9.863780e-52 | -8.615850e-47 |
| Msa0530790 | Msa0665610 | 0.941387 | 4.544458e-101 | -8.615850e-47 |
| Msa0587630 | Msa0665610 | 0.938909 | 3.079914e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665610 | MtrunA17_Chr4g0003721 | 94.578 | 166 | 7 | 1 | 1 | 166 | 1 | 164 | 2.70e-99 | 283 |
| Msa0665610 | MtrunA17_Chr4g0003741 | 94.578 | 166 | 7 | 1 | 1 | 166 | 1 | 164 | 5.81e-99 | 282 |
| Msa0665610 | MtrunA17_Chr4g0003751 | 70.370 | 162 | 19 | 3 | 1 | 162 | 1 | 133 | 5.91e-68 | 202 |
| Msa0665610 | MtrunA17_Chr1g0168911 | 35.135 | 148 | 71 | 3 | 1 | 141 | 1 | 130 | 5.92e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665610 | AT1G52690.1 | 50.943 | 159 | 67 | 5 | 1 | 154 | 1 | 153 | 1.39e-37 | 127 |
| Msa0665610 | AT1G52690.2 | 50.943 | 159 | 67 | 5 | 1 | 154 | 1 | 153 | 1.39e-37 | 127 |
| Msa0665610 | AT3G15670.1 | 43.842 | 203 | 61 | 7 | 1 | 152 | 1 | 201 | 2.40e-32 | 115 |
| Msa0665610 | AT4G13560.1 | 46.392 | 97 | 48 | 1 | 46 | 142 | 15 | 107 | 6.81e-17 | 72.4 |
| Msa0665610 | AT4G13560.2 | 46.392 | 97 | 48 | 1 | 46 | 142 | 15 | 107 | 6.81e-17 | 72.4 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTGGGCTGTTTGC+TGG | 0.217726 | 4_4:+5230556 | None:intergenic |
| TCCTGATTGGGCAGTTTCTT+TGG | 0.242344 | 4_4:+5230470 | None:intergenic |
| TTACTGCTTGGGCTGTTTGC+TGG | 0.254500 | 4_4:+5230589 | None:intergenic |
| CTGAGTTGTCCTTTCCTGAT+TGG | 0.261169 | 4_4:+5230457 | None:intergenic |
| GAGGCTGTTAAGAACACTTT+AGG | 0.327547 | 4_4:-5230378 | Msa0665610:CDS |
| AGCTTGACCAGTTGTGTCTT+GGG | 0.346499 | 4_4:+5230524 | None:intergenic |
| TAGCTTGACCAGTTGTGTCT+TGG | 0.346890 | 4_4:+5230523 | None:intergenic |
| TACTGCTTGGGCTGTTTGCT+GGG | 0.347910 | 4_4:+5230590 | None:intergenic |
| CACCTATGTTGCCCATCATC+TGG | 0.349304 | 4_4:+5230706 | None:intergenic |
| CTGTCTTCTCCTTAGCTGCT+TGG | 0.355767 | 4_4:+5230643 | None:intergenic |
| TGAGTTGTCCTTTCCTGATT+GGG | 0.358541 | 4_4:+5230458 | None:intergenic |
| GGGCAGTTTCTTTGGTAGCC+TGG | 0.369272 | 4_4:+5230478 | None:intergenic |
| TGTCTTCTCCTTAGCTGCTT+GGG | 0.380418 | 4_4:+5230644 | None:intergenic |
| TGTTGCTTGGGCTGTTTGCT+GGG | 0.405323 | 4_4:+5230557 | None:intergenic |
| ACAGACAGGTGAAAAGGTTA+AGG | 0.409547 | 4_4:-5230421 | Msa0665610:CDS |
| CAGCTTTGTAACTTTGGTCG+TGG | 0.418960 | 4_4:+5231268 | None:intergenic |
| ACCAAAGAAACTGCCCAATC+AGG | 0.426421 | 4_4:-5230471 | Msa0665610:CDS |
| TTGTACCTCAGTTCTGCCCA+TGG | 0.458836 | 4_4:+5231239 | None:intergenic |
| GCAAACAGCCCAAGCAGTAA+AGG | 0.474093 | 4_4:-5230586 | Msa0665610:CDS |
| GGAAAAGTCAAACCAGATGA+TGG | 0.474776 | 4_4:-5230718 | Msa0665610:CDS |
| AGCCCAAGCTGCAAAGGAAA+AGG | 0.475347 | 4_4:-5230679 | Msa0665610:CDS |
| TTTCACCAGCTTTGTAACTT+TGG | 0.484833 | 4_4:+5231262 | None:intergenic |
| TTTGCAACAGACAGGTGAAA+AGG | 0.484901 | 4_4:-5230427 | Msa0665610:CDS |
| TCAGGAAAGGACAACTCAGC+TGG | 0.488267 | 4_4:-5230453 | Msa0665610:CDS |
| CAGACAGGTGAAAAGGTTAA+GGG | 0.501139 | 4_4:-5230420 | Msa0665610:CDS |
| GATAAAACCCAAGACACAAC+TGG | 0.501444 | 4_4:-5230531 | Msa0665610:CDS |
| AGCTTTGTAACTTTGGTCGT+GGG | 0.503041 | 4_4:+5231269 | None:intergenic |
| ACAGACAGCCCAAGCTGCAA+AGG | 0.520144 | 4_4:-5230619 | Msa0665610:CDS |
| ACAAACAGCCCAAGCAGCTA+AGG | 0.522462 | 4_4:-5230652 | Msa0665610:CDS |
| AGGTGAAAAGGTTAAGGGTA+TGG | 0.530822 | 4_4:-5230415 | Msa0665610:CDS |
| TAGAGACAAGGGTTATGAGA+TGG | 0.536052 | 4_4:-5230502 | Msa0665610:CDS |
| CAAGCAGCTAAGGAGAAGAC+AGG | 0.539522 | 4_4:-5230642 | Msa0665610:CDS |
| AGAGACAAGGGTTATGAGAT+GGG | 0.559398 | 4_4:-5230501 | Msa0665610:CDS |
| GCAAACAGCCCAAGCAACAA+AGG | 0.560474 | 4_4:-5230553 | Msa0665610:CDS |
| TGACAAAGCCCAAGCTGCAA+AGG | 0.561029 | 4_4:-5230685 | Msa0665610:CDS |
| CACGACCAAAGTTACAAAGC+TGG | 0.573882 | 4_4:-5231267 | Msa0665610:CDS |
| GAAAAGTCAAACCAGATGAT+GGG | 0.578776 | 4_4:-5230717 | Msa0665610:CDS |
| CAAGGGTTATGAGATGGGCC+AGG | 0.585538 | 4_4:-5230496 | Msa0665610:CDS |
| TTACAAAGCTGGTGAAACCA+TGG | 0.588708 | 4_4:-5231256 | Msa0665610:CDS |
| TCAATCAACAACGTTACGAC+GGG | 0.588754 | 4_4:+5230293 | None:intergenic |
| AACCAGATGATGGGCAACAT+AGG | 0.591141 | 4_4:-5230708 | Msa0665610:CDS |
| CTCAATCAACAACGTTACGA+CGG | 0.597111 | 4_4:+5230292 | None:intergenic |
| TACAAAGCTGGTGAAACCAT+GGG | 0.608239 | 4_4:-5231255 | Msa0665610:CDS |
| AGAAACTGCCCAATCAGGAA+AGG | 0.617206 | 4_4:-5230466 | Msa0665610:CDS |
| AACTGGTCAAGCTAGAGACA+AGG | 0.623107 | 4_4:-5230514 | Msa0665610:CDS |
| AAGGTTAAGGGTATGGCACA+AGG | 0.628466 | 4_4:-5230408 | Msa0665610:CDS |
| AAATCAAGAAGATGAAGACA+AGG | 0.638128 | 4_4:-5230346 | Msa0665610:CDS |
| TATGGCACAAGGTGCTACTG+AGG | 0.642781 | 4_4:-5230397 | Msa0665610:CDS |
| ACTGGTCAAGCTAGAGACAA+GGG | 0.688619 | 4_4:-5230513 | Msa0665610:CDS |
| TGAAACCATGGGCAGAACTG+AGG | 0.692681 | 4_4:-5231244 | Msa0665610:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTATAGTTGAATTTT+TGG | - | chr4_4:5230792-5230811 | Msa0665610:intron | 10.0% |
| !!! | TATATTTATAGTTGAATTTT+TGG | - | chr4_4:5230792-5230811 | Msa0665610:intron | 10.0% |
| !! | AATAAATCTTGAGTAAAAAA+TGG | + | chr4_4:5230409-5230428 | None:intergenic | 15.0% |
| !! | TAATAATAAAATAGATTTCC+GGG | + | chr4_4:5230697-5230716 | None:intergenic | 15.0% |
| !! | CTAATAATAAAATAGATTTC+CGG | + | chr4_4:5230698-5230717 | None:intergenic | 15.0% |
| !!! | TATAAATTAGGTAAATTTTG+TGG | + | chr4_4:5230741-5230760 | None:intergenic | 15.0% |
| !! | ATTTACCTAATTTATATTGA+TGG | - | chr4_4:5230745-5230764 | Msa0665610:intron | 15.0% |
| !! | AATAAATCTTGAGTAAAAAA+TGG | + | chr4_4:5230409-5230428 | None:intergenic | 15.0% |
| !! | TAATAATAAAATAGATTTCC+GGG | + | chr4_4:5230697-5230716 | None:intergenic | 15.0% |
| !! | CTAATAATAAAATAGATTTC+CGG | + | chr4_4:5230698-5230717 | None:intergenic | 15.0% |
| !!! | TATAAATTAGGTAAATTTTG+TGG | + | chr4_4:5230741-5230760 | None:intergenic | 15.0% |
| !! | ATTTACCTAATTTATATTGA+TGG | - | chr4_4:5230745-5230764 | Msa0665610:intron | 15.0% |
| !! | AGTAAAAAATGGAAGAAATT+AGG | + | chr4_4:5230398-5230417 | None:intergenic | 20.0% |
| !!! | TCAAGATTTATTATCTTTTG+AGG | - | chr4_4:5230417-5230436 | Msa0665610:CDS | 20.0% |
| !!! | CAAGATTTATTATCTTTTGA+GGG | - | chr4_4:5230418-5230437 | Msa0665610:CDS | 20.0% |
| !!! | AAGATTTATTATCTTTTGAG+GGG | - | chr4_4:5230419-5230438 | Msa0665610:CDS | 20.0% |
| !! | ATAATGTATAGTATAAGTAG+GGG | + | chr4_4:5230657-5230676 | None:intergenic | 20.0% |
| !! | GATAATGTATAGTATAAGTA+GGG | + | chr4_4:5230658-5230677 | None:intergenic | 20.0% |
| !! | AGATAATGTATAGTATAAGT+AGG | + | chr4_4:5230659-5230678 | None:intergenic | 20.0% |
| !! | CATTACCATCAATATAAATT+AGG | + | chr4_4:5230753-5230772 | None:intergenic | 20.0% |
| !! | TCAACTATAAATATAGTACT+TGG | + | chr4_4:5230787-5230806 | None:intergenic | 20.0% |
| !! | AGTAAAAAATGGAAGAAATT+AGG | + | chr4_4:5230398-5230417 | None:intergenic | 20.0% |
| !!! | TCAAGATTTATTATCTTTTG+AGG | - | chr4_4:5230417-5230436 | Msa0665610:CDS | 20.0% |
| !!! | CAAGATTTATTATCTTTTGA+GGG | - | chr4_4:5230418-5230437 | Msa0665610:CDS | 20.0% |
| !!! | AAGATTTATTATCTTTTGAG+GGG | - | chr4_4:5230419-5230438 | Msa0665610:CDS | 20.0% |
| !! | ATAATGTATAGTATAAGTAG+GGG | + | chr4_4:5230657-5230676 | None:intergenic | 20.0% |
| !! | GATAATGTATAGTATAAGTA+GGG | + | chr4_4:5230658-5230677 | None:intergenic | 20.0% |
| !! | AGATAATGTATAGTATAAGT+AGG | + | chr4_4:5230659-5230678 | None:intergenic | 20.0% |
| !! | CATTACCATCAATATAAATT+AGG | + | chr4_4:5230753-5230772 | None:intergenic | 20.0% |
| !! | TCAACTATAAATATAGTACT+TGG | + | chr4_4:5230787-5230806 | None:intergenic | 20.0% |
| !!! | ATATGCATAACAGTTTTTTG+TGG | - | chr4_4:5230508-5230527 | Msa0665610:CDS | 25.0% |
| !!! | TATGCATAACAGTTTTTTGT+GGG | - | chr4_4:5230509-5230528 | Msa0665610:CDS | 25.0% |
| ! | AAAGTGTGTTAGATATATGT+TGG | + | chr4_4:5230591-5230610 | None:intergenic | 25.0% |
| !! | TTAACATAACTGTGATTTGT+TGG | - | chr4_4:5230816-5230835 | Msa0665610:intron | 25.0% |
| !!! | TTGTTGTTTTTGTTGTGAAA+TGG | + | chr4_4:5231250-5231269 | None:intergenic | 25.0% |
| !!! | ATATGCATAACAGTTTTTTG+TGG | - | chr4_4:5230508-5230527 | Msa0665610:CDS | 25.0% |
| !!! | TATGCATAACAGTTTTTTGT+GGG | - | chr4_4:5230509-5230528 | Msa0665610:CDS | 25.0% |
| ! | AAAGTGTGTTAGATATATGT+TGG | + | chr4_4:5230591-5230610 | None:intergenic | 25.0% |
| !! | TTAACATAACTGTGATTTGT+TGG | - | chr4_4:5230816-5230835 | Msa0665610:intron | 25.0% |
| !!! | TTGTTGTTTTTGTTGTGAAA+TGG | + | chr4_4:5231250-5231269 | None:intergenic | 25.0% |
| TTGAATGTAAATGATCCTTG+AGG | - | chr4_4:5230455-5230474 | Msa0665610:CDS | 30.0% | |
| TGAATGTAAATGATCCTTGA+GGG | - | chr4_4:5230456-5230475 | Msa0665610:CDS | 30.0% | |
| AAATCAAGAAGATGAAGACA+AGG | - | chr4_4:5231223-5231242 | Msa0665610:intron | 30.0% | |
| TTGAATGTAAATGATCCTTG+AGG | - | chr4_4:5230455-5230474 | Msa0665610:CDS | 30.0% | |
| TGAATGTAAATGATCCTTGA+GGG | - | chr4_4:5230456-5230475 | Msa0665610:CDS | 30.0% | |
| AAATCAAGAAGATGAAGACA+AGG | - | chr4_4:5231223-5231242 | Msa0665610:intron | 30.0% | |
| ! | TTTCACCAGCTTTGTAACTT+TGG | + | chr4_4:5230310-5230329 | None:intergenic | 35.0% |
| GAATGTAAATGATCCTTGAG+GGG | - | chr4_4:5230457-5230476 | Msa0665610:CDS | 35.0% | |
| !!! | ATATGTTGGTAGCAGTTTTC+TGG | + | chr4_4:5230577-5230596 | None:intergenic | 35.0% |
| ! | TTTTCCTAAGTTTCGAACTC+CGG | - | chr4_4:5230631-5230650 | Msa0665610:CDS | 35.0% |
| GAAAAGTCAAACCAGATGAT+GGG | - | chr4_4:5230852-5230871 | Msa0665610:intron | 35.0% | |
| !! | GGTTTTATCCTTTGTTGCTT+GGG | + | chr4_4:5231027-5231046 | None:intergenic | 35.0% |
| ! | TTTCACCAGCTTTGTAACTT+TGG | + | chr4_4:5230310-5230329 | None:intergenic | 35.0% |
| GAATGTAAATGATCCTTGAG+GGG | - | chr4_4:5230457-5230476 | Msa0665610:CDS | 35.0% | |
| !!! | ATATGTTGGTAGCAGTTTTC+TGG | + | chr4_4:5230577-5230596 | None:intergenic | 35.0% |
| ! | TTTTCCTAAGTTTCGAACTC+CGG | - | chr4_4:5230631-5230650 | Msa0665610:CDS | 35.0% |
| GAAAAGTCAAACCAGATGAT+GGG | - | chr4_4:5230852-5230871 | Msa0665610:intron | 35.0% | |
| !! | GGTTTTATCCTTTGTTGCTT+GGG | + | chr4_4:5231027-5231046 | None:intergenic | 35.0% |
| ! | AGCTTTGTAACTTTGGTCGT+GGG | + | chr4_4:5230303-5230322 | None:intergenic | 40.0% |
| TTACAAAGCTGGTGAAACCA+TGG | - | chr4_4:5230313-5230332 | Msa0665610:CDS | 40.0% | |
| TACAAAGCTGGTGAAACCAT+GGG | - | chr4_4:5230314-5230333 | Msa0665610:CDS | 40.0% | |
| GATGATAAATCTTCCCCTCA+AGG | + | chr4_4:5230435-5230454 | None:intergenic | 40.0% | |
| TGTATAGTATAAGTAGGGGC+CGG | + | chr4_4:5230653-5230672 | None:intergenic | 40.0% | |
| ! | ATTTGTTGGATGTGTTGACC+AGG | - | chr4_4:5230830-5230849 | Msa0665610:intron | 40.0% |
| !! | TCATCTGGTTTGACTTTTCC+TGG | + | chr4_4:5230851-5230870 | None:intergenic | 40.0% |
| GGAAAAGTCAAACCAGATGA+TGG | - | chr4_4:5230851-5230870 | Msa0665610:intron | 40.0% | |
| !! | GGTTTTGTCCTTTACTGCTT+GGG | + | chr4_4:5230994-5231013 | None:intergenic | 40.0% |
| !! | GGGTTTTATCCTTTGTTGCT+TGG | + | chr4_4:5231028-5231047 | None:intergenic | 40.0% |
| GATAAAACCCAAGACACAAC+TGG | - | chr4_4:5231038-5231057 | Msa0665610:intron | 40.0% | |
| TAGAGACAAGGGTTATGAGA+TGG | - | chr4_4:5231067-5231086 | Msa0665610:intron | 40.0% | |
| AGAGACAAGGGTTATGAGAT+GGG | - | chr4_4:5231068-5231087 | Msa0665610:intron | 40.0% | |
| TGAGTTGTCCTTTCCTGATT+GGG | + | chr4_4:5231114-5231133 | None:intergenic | 40.0% | |
| TTTGCAACAGACAGGTGAAA+AGG | - | chr4_4:5231142-5231161 | Msa0665610:intron | 40.0% | |
| ACAGACAGGTGAAAAGGTTA+AGG | - | chr4_4:5231148-5231167 | Msa0665610:intron | 40.0% | |
| CAGACAGGTGAAAAGGTTAA+GGG | - | chr4_4:5231149-5231168 | Msa0665610:intron | 40.0% | |
| AGGTGAAAAGGTTAAGGGTA+TGG | - | chr4_4:5231154-5231173 | Msa0665610:intron | 40.0% | |
| GAGGCTGTTAAGAACACTTT+AGG | - | chr4_4:5231191-5231210 | Msa0665610:intron | 40.0% | |
| TCAATCAACAACGTTACGAC+GGG | + | chr4_4:5231279-5231298 | None:intergenic | 40.0% | |
| ! | AGCTTTGTAACTTTGGTCGT+GGG | + | chr4_4:5230303-5230322 | None:intergenic | 40.0% |
| TTACAAAGCTGGTGAAACCA+TGG | - | chr4_4:5230313-5230332 | Msa0665610:CDS | 40.0% | |
| TACAAAGCTGGTGAAACCAT+GGG | - | chr4_4:5230314-5230333 | Msa0665610:CDS | 40.0% | |
| GATGATAAATCTTCCCCTCA+AGG | + | chr4_4:5230435-5230454 | None:intergenic | 40.0% | |
| TGTATAGTATAAGTAGGGGC+CGG | + | chr4_4:5230653-5230672 | None:intergenic | 40.0% | |
| ! | ATTTGTTGGATGTGTTGACC+AGG | - | chr4_4:5230830-5230849 | Msa0665610:intron | 40.0% |
| !! | TCATCTGGTTTGACTTTTCC+TGG | + | chr4_4:5230851-5230870 | None:intergenic | 40.0% |
| GGAAAAGTCAAACCAGATGA+TGG | - | chr4_4:5230851-5230870 | Msa0665610:intron | 40.0% | |
| !! | GGTTTTGTCCTTTACTGCTT+GGG | + | chr4_4:5230994-5231013 | None:intergenic | 40.0% |
| !! | GGGTTTTATCCTTTGTTGCT+TGG | + | chr4_4:5231028-5231047 | None:intergenic | 40.0% |
| GATAAAACCCAAGACACAAC+TGG | - | chr4_4:5231038-5231057 | Msa0665610:intron | 40.0% | |
| TAGAGACAAGGGTTATGAGA+TGG | - | chr4_4:5231067-5231086 | Msa0665610:intron | 40.0% | |
| AGAGACAAGGGTTATGAGAT+GGG | - | chr4_4:5231068-5231087 | Msa0665610:intron | 40.0% | |
| TGAGTTGTCCTTTCCTGATT+GGG | + | chr4_4:5231114-5231133 | None:intergenic | 40.0% | |
| TTTGCAACAGACAGGTGAAA+AGG | - | chr4_4:5231142-5231161 | Msa0665610:intron | 40.0% | |
| ACAGACAGGTGAAAAGGTTA+AGG | - | chr4_4:5231148-5231167 | Msa0665610:intron | 40.0% | |
| CAGACAGGTGAAAAGGTTAA+GGG | - | chr4_4:5231149-5231168 | Msa0665610:intron | 40.0% | |
| AGGTGAAAAGGTTAAGGGTA+TGG | - | chr4_4:5231154-5231173 | Msa0665610:intron | 40.0% | |
| GAGGCTGTTAAGAACACTTT+AGG | - | chr4_4:5231191-5231210 | Msa0665610:intron | 40.0% | |
| TCAATCAACAACGTTACGAC+GGG | + | chr4_4:5231279-5231298 | None:intergenic | 40.0% | |
| ! | CAGCTTTGTAACTTTGGTCG+TGG | + | chr4_4:5230304-5230323 | None:intergenic | 45.0% |
| CACGACCAAAGTTACAAAGC+TGG | - | chr4_4:5230302-5230321 | Msa0665610:CDS | 45.0% | |
| TCTCTCACTAATGAGCTACC+CGG | - | chr4_4:5230676-5230695 | Msa0665610:CDS | 45.0% | |
| !! | AACCAGATGATGGGCAACAT+AGG | - | chr4_4:5230861-5230880 | Msa0665610:intron | 45.0% |
| ! | AGCCTTTTCCTTTGCAGCTT+GGG | + | chr4_4:5230895-5230914 | None:intergenic | 45.0% |
| TGTCTTCTCCTTAGCTGCTT+GGG | + | chr4_4:5230928-5230947 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCCTTTGCAGCTT+GGG | + | chr4_4:5230961-5230980 | None:intergenic | 45.0% |
| !! | GGGTTTTGTCCTTTACTGCT+TGG | + | chr4_4:5230995-5231014 | None:intergenic | 45.0% |
| AGCTTGACCAGTTGTGTCTT+GGG | + | chr4_4:5231048-5231067 | None:intergenic | 45.0% | |
| TAGCTTGACCAGTTGTGTCT+TGG | + | chr4_4:5231049-5231068 | None:intergenic | 45.0% | |
| AACTGGTCAAGCTAGAGACA+AGG | - | chr4_4:5231055-5231074 | Msa0665610:intron | 45.0% | |
| ACTGGTCAAGCTAGAGACAA+GGG | - | chr4_4:5231056-5231075 | Msa0665610:intron | 45.0% | |
| ACCAAAGAAACTGCCCAATC+AGG | - | chr4_4:5231098-5231117 | Msa0665610:intron | 45.0% | |
| TCCTGATTGGGCAGTTTCTT+TGG | + | chr4_4:5231102-5231121 | None:intergenic | 45.0% | |
| AGAAACTGCCCAATCAGGAA+AGG | - | chr4_4:5231103-5231122 | Msa0665610:intron | 45.0% | |
| CTGAGTTGTCCTTTCCTGAT+TGG | + | chr4_4:5231115-5231134 | None:intergenic | 45.0% | |
| ! | GCTGGATTTTTGCAACAGAC+AGG | - | chr4_4:5231134-5231153 | Msa0665610:intron | 45.0% |
| ! | AAGGTTAAGGGTATGGCACA+AGG | - | chr4_4:5231161-5231180 | Msa0665610:intron | 45.0% |
| ! | CAGCTTTGTAACTTTGGTCG+TGG | + | chr4_4:5230304-5230323 | None:intergenic | 45.0% |
| CACGACCAAAGTTACAAAGC+TGG | - | chr4_4:5230302-5230321 | Msa0665610:CDS | 45.0% | |
| TCTCTCACTAATGAGCTACC+CGG | - | chr4_4:5230676-5230695 | Msa0665610:CDS | 45.0% | |
| !! | AACCAGATGATGGGCAACAT+AGG | - | chr4_4:5230861-5230880 | Msa0665610:intron | 45.0% |
| ! | AGCCTTTTCCTTTGCAGCTT+GGG | + | chr4_4:5230895-5230914 | None:intergenic | 45.0% |
| TGTCTTCTCCTTAGCTGCTT+GGG | + | chr4_4:5230928-5230947 | None:intergenic | 45.0% | |
| ! | GGTTTTCTCCTTTGCAGCTT+GGG | + | chr4_4:5230961-5230980 | None:intergenic | 45.0% |
| !! | GGGTTTTGTCCTTTACTGCT+TGG | + | chr4_4:5230995-5231014 | None:intergenic | 45.0% |
| AGCTTGACCAGTTGTGTCTT+GGG | + | chr4_4:5231048-5231067 | None:intergenic | 45.0% | |
| TAGCTTGACCAGTTGTGTCT+TGG | + | chr4_4:5231049-5231068 | None:intergenic | 45.0% | |
| AACTGGTCAAGCTAGAGACA+AGG | - | chr4_4:5231055-5231074 | Msa0665610:intron | 45.0% | |
| ACTGGTCAAGCTAGAGACAA+GGG | - | chr4_4:5231056-5231075 | Msa0665610:intron | 45.0% | |
| ACCAAAGAAACTGCCCAATC+AGG | - | chr4_4:5231098-5231117 | Msa0665610:intron | 45.0% | |
| TCCTGATTGGGCAGTTTCTT+TGG | + | chr4_4:5231102-5231121 | None:intergenic | 45.0% | |
| AGAAACTGCCCAATCAGGAA+AGG | - | chr4_4:5231103-5231122 | Msa0665610:intron | 45.0% | |
| CTGAGTTGTCCTTTCCTGAT+TGG | + | chr4_4:5231115-5231134 | None:intergenic | 45.0% | |
| ! | GCTGGATTTTTGCAACAGAC+AGG | - | chr4_4:5231134-5231153 | Msa0665610:intron | 45.0% |
| ! | AAGGTTAAGGGTATGGCACA+AGG | - | chr4_4:5231161-5231180 | Msa0665610:intron | 45.0% |
| TGAAACCATGGGCAGAACTG+AGG | - | chr4_4:5230325-5230344 | Msa0665610:CDS | 50.0% | |
| TTGTACCTCAGTTCTGCCCA+TGG | + | chr4_4:5230333-5230352 | None:intergenic | 50.0% | |
| CACCTATGTTGCCCATCATC+TGG | + | chr4_4:5230866-5230885 | None:intergenic | 50.0% | |
| TGACAAAGCCCAAGCTGCAA+AGG | - | chr4_4:5230884-5230903 | Msa0665610:intron | 50.0% | |
| AGCCCAAGCTGCAAAGGAAA+AGG | - | chr4_4:5230890-5230909 | Msa0665610:intron | 50.0% | |
| ! | GAGCCTTTTCCTTTGCAGCT+TGG | + | chr4_4:5230896-5230915 | None:intergenic | 50.0% |
| ACAAACAGCCCAAGCAGCTA+AGG | - | chr4_4:5230917-5230936 | Msa0665610:intron | 50.0% | |
| CTGTCTTCTCCTTAGCTGCT+TGG | + | chr4_4:5230929-5230948 | None:intergenic | 50.0% | |
| CAAGCAGCTAAGGAGAAGAC+AGG | - | chr4_4:5230927-5230946 | Msa0665610:intron | 50.0% | |
| ! | GGGTTTTCTCCTTTGCAGCT+TGG | + | chr4_4:5230962-5230981 | None:intergenic | 50.0% |
| TACTGCTTGGGCTGTTTGCT+GGG | + | chr4_4:5230982-5231001 | None:intergenic | 50.0% | |
| TTACTGCTTGGGCTGTTTGC+TGG | + | chr4_4:5230983-5231002 | None:intergenic | 50.0% | |
| GCAAACAGCCCAAGCAGTAA+AGG | - | chr4_4:5230983-5231002 | Msa0665610:intron | 50.0% | |
| ! | TGTTGCTTGGGCTGTTTGCT+GGG | + | chr4_4:5231015-5231034 | None:intergenic | 50.0% |
| ! | TTGTTGCTTGGGCTGTTTGC+TGG | + | chr4_4:5231016-5231035 | None:intergenic | 50.0% |
| GCAAACAGCCCAAGCAACAA+AGG | - | chr4_4:5231016-5231035 | Msa0665610:intron | 50.0% | |
| TCAGGAAAGGACAACTCAGC+TGG | - | chr4_4:5231116-5231135 | Msa0665610:intron | 50.0% | |
| !! | TATGGCACAAGGTGCTACTG+AGG | - | chr4_4:5231172-5231191 | Msa0665610:intron | 50.0% |
| TGAAACCATGGGCAGAACTG+AGG | - | chr4_4:5230325-5230344 | Msa0665610:CDS | 50.0% | |
| TTGTACCTCAGTTCTGCCCA+TGG | + | chr4_4:5230333-5230352 | None:intergenic | 50.0% | |
| CACCTATGTTGCCCATCATC+TGG | + | chr4_4:5230866-5230885 | None:intergenic | 50.0% | |
| TGACAAAGCCCAAGCTGCAA+AGG | - | chr4_4:5230884-5230903 | Msa0665610:intron | 50.0% | |
| AGCCCAAGCTGCAAAGGAAA+AGG | - | chr4_4:5230890-5230909 | Msa0665610:intron | 50.0% | |
| ! | GAGCCTTTTCCTTTGCAGCT+TGG | + | chr4_4:5230896-5230915 | None:intergenic | 50.0% |
| ACAAACAGCCCAAGCAGCTA+AGG | - | chr4_4:5230917-5230936 | Msa0665610:intron | 50.0% | |
| CTGTCTTCTCCTTAGCTGCT+TGG | + | chr4_4:5230929-5230948 | None:intergenic | 50.0% | |
| CAAGCAGCTAAGGAGAAGAC+AGG | - | chr4_4:5230927-5230946 | Msa0665610:intron | 50.0% | |
| ! | GGGTTTTCTCCTTTGCAGCT+TGG | + | chr4_4:5230962-5230981 | None:intergenic | 50.0% |
| TACTGCTTGGGCTGTTTGCT+GGG | + | chr4_4:5230982-5231001 | None:intergenic | 50.0% | |
| TTACTGCTTGGGCTGTTTGC+TGG | + | chr4_4:5230983-5231002 | None:intergenic | 50.0% | |
| GCAAACAGCCCAAGCAGTAA+AGG | - | chr4_4:5230983-5231002 | Msa0665610:intron | 50.0% | |
| ! | TGTTGCTTGGGCTGTTTGCT+GGG | + | chr4_4:5231015-5231034 | None:intergenic | 50.0% |
| ! | TTGTTGCTTGGGCTGTTTGC+TGG | + | chr4_4:5231016-5231035 | None:intergenic | 50.0% |
| GCAAACAGCCCAAGCAACAA+AGG | - | chr4_4:5231016-5231035 | Msa0665610:intron | 50.0% | |
| TCAGGAAAGGACAACTCAGC+TGG | - | chr4_4:5231116-5231135 | Msa0665610:intron | 50.0% | |
| !! | TATGGCACAAGGTGCTACTG+AGG | - | chr4_4:5231172-5231191 | Msa0665610:intron | 50.0% |
| ACAGACAGCCCAAGCTGCAA+AGG | - | chr4_4:5230950-5230969 | Msa0665610:intron | 55.0% | |
| CAAGGGTTATGAGATGGGCC+AGG | - | chr4_4:5231073-5231092 | Msa0665610:intron | 55.0% | |
| ! | GGGCAGTTTCTTTGGTAGCC+TGG | + | chr4_4:5231094-5231113 | None:intergenic | 55.0% |
| ACAGACAGCCCAAGCTGCAA+AGG | - | chr4_4:5230950-5230969 | Msa0665610:intron | 55.0% | |
| CAAGGGTTATGAGATGGGCC+AGG | - | chr4_4:5231073-5231092 | Msa0665610:intron | 55.0% | |
| ! | GGGCAGTTTCTTTGGTAGCC+TGG | + | chr4_4:5231094-5231113 | None:intergenic | 55.0% |
| GGGGCCGGAGTTCGAAACTT+AGG | + | chr4_4:5230638-5230657 | None:intergenic | 60.0% | |
| GGGGCCGGAGTTCGAAACTT+AGG | + | chr4_4:5230638-5230657 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 5230293 | 5231298 | 5230293 | ID=Msa0665610;Name=Msa0665610 |
| chr4_4 | mRNA | 5230293 | 5231298 | 5230293 | ID=Msa0665610-mRNA-1;Parent=Msa0665610;Name=Msa0665610-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.5|1|1|2|0|166 |
| chr4_4 | exon | 5231245 | 5231298 | 5231245 | ID=Msa0665610-mRNA-1:exon:1712;Parent=Msa0665610-mRNA-1 |
| chr4_4 | exon | 5230293 | 5230739 | 5230293 | ID=Msa0665610-mRNA-1:exon:1711;Parent=Msa0665610-mRNA-1 |
| chr4_4 | CDS | 5231245 | 5231298 | 5231245 | ID=Msa0665610-mRNA-1:cds;Parent=Msa0665610-mRNA-1 |
| chr4_4 | CDS | 5230293 | 5230739 | 5230293 | ID=Msa0665610-mRNA-1:cds;Parent=Msa0665610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
