AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 21 sgRNAs with CRISPR-Local

Find 504 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTCTTCTTACAAATTT+TGG 0.083112 4_2:+10349072 Msa0588150:five_prime_UTR
TGTAATTGAGTTCCTTAATT+TGG 0.126873 4_2:-10348986 None:intergenic
TGTAATTGAGTTCCTTAATT+TGG 0.142886 4_2:-10345595 None:intergenic
AGGAAGCATAAAATGGTTTA+AGG 0.201148 4_2:+10349417 Msa0588150:CDS
GATGGATTATGAAGAAATAT+TGG 0.341180 4_2:-10349044 Msa0588170:CDS
ATGAGTTAGGAAGCATAAAA+TGG 0.344746 4_2:+10349410 Msa0588150:CDS
AAGAAAATAAGTCCAAATTA+AGG 0.353422 4_2:+10345583 Msa0588150:five_prime_UTR
AAGAAAATAAGTCCAAATTA+AGG 0.353422 4_2:+10348974 Msa0588150:five_prime_UTR
TGAATGTGTCAATGAACTTA+TGG 0.360049 4_2:-10349290 Msa0588170:CDS
GCTTAAGAAACAAAAGCATT+TGG 0.414343 4_2:-10349345 Msa0588170:CDS
TACTTACAAAACTTTGATGA+TGG 0.421556 4_2:-10349157 Msa0588170:CDS
TGGTCAAGTTACGAGAGAAT+TGG 0.432809 4_2:-10349325 Msa0588170:CDS
AGTTCATTGACACATTCAAT+AGG 0.443595 4_2:+10349295 Msa0588150:five_prime_UTR
GTGTATAGAGTAGATGAGTT+AGG 0.448425 4_2:+10349397 Msa0588150:CDS
TAAGAAGAATTCTGAAGTGA+TGG 0.452104 4_2:-10349062 Msa0588170:CDS
CTTGAAAATTGTGACTGTCT+AGG 0.512836 4_2:-10349367 Msa0588170:CDS
AGATTAAGAAAGAAAAGAAG+AGG 0.531815 4_2:-10349228 Msa0588170:CDS
AAGTATATGCATTGCTGAGG+TGG 0.584879 4_2:-10349546 None:intergenic
CTCATCTACTCTATACACCA+TGG 0.629251 4_2:-10349392 Msa0588170:CDS
TCAAAGTATATGCATTGCTG+AGG 0.660892 4_2:-10349549 None:intergenic
GCATTGCTGAGGTGGTGATG+AGG 0.699696 4_2:-10349538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAAATGAATAAAAATT+AGG - chr4_2:10346498-10346517 None:intergenic 10.0%
!! TTTCAAAATAAACTAATTAA+GGG - chr4_2:10346656-10346675 None:intergenic 10.0%
!! ATTTCAAAATAAACTAATTA+AGG - chr4_2:10346657-10346676 None:intergenic 10.0%
!!! CATAAAAAGTTTTTTTTTTT+AGG - chr4_2:10348560-10348579 None:intergenic 10.0%
!! TCAAAAAATGAATAAAAATT+AGG - chr4_2:10346498-10346517 None:intergenic 10.0%
!! TTTCAAAATAAACTAATTAA+GGG - chr4_2:10346656-10346675 None:intergenic 10.0%
!! ATTTCAAAATAAACTAATTA+AGG - chr4_2:10346657-10346676 None:intergenic 10.0%
!!! CATAAAAAGTTTTTTTTTTT+AGG - chr4_2:10348560-10348579 None:intergenic 10.0%
!!! TACTTAAAAAATTTTGATGA+TGG - chr4_2:10345772-10345791 Msa0588160:CDS 15.0%
!! GAAAAAGAAAAAAGTTAATA+TGG + chr4_2:10346204-10346223 Msa0588150:intron 15.0%
!!! AGTTTTAAGTATTGAATTTT+AGG - chr4_2:10347474-10347493 None:intergenic 15.0%
!!! GATACTTTTACTATAAATAT+AGG - chr4_2:10348060-10348079 None:intergenic 15.0%
!!! AATAAGATTTATGTTTTCAT+TGG - chr4_2:10348418-10348437 None:intergenic 15.0%
!!! TCTTTTTATGTTTTTGAATT+AGG - chr4_2:10348790-10348809 None:intergenic 15.0%
!!! TTAAATATTAGATTTTGGAA+AGG - chr4_2:10348871-10348890 None:intergenic 15.0%
!!! CAACTTTAAATATTAGATTT+TGG - chr4_2:10348876-10348895 None:intergenic 15.0%
!! GAAAAAGAAAAAAGTTAATT+TGG + chr4_2:10349593-10349612 Msa0588150:CDS 15.0%
!!! TACTTAAAAAATTTTGATGA+TGG - chr4_2:10345772-10345791 Msa0588160:CDS 15.0%
!! GAAAAAGAAAAAAGTTAATA+TGG + chr4_2:10346204-10346223 Msa0588150:intron 15.0%
!!! AGTTTTAAGTATTGAATTTT+AGG - chr4_2:10347474-10347493 None:intergenic 15.0%
!!! GATACTTTTACTATAAATAT+AGG - chr4_2:10348060-10348079 None:intergenic 15.0%
!!! AATAAGATTTATGTTTTCAT+TGG - chr4_2:10348418-10348437 None:intergenic 15.0%
!!! TCTTTTTATGTTTTTGAATT+AGG - chr4_2:10348790-10348809 None:intergenic 15.0%
!!! TTAAATATTAGATTTTGGAA+AGG - chr4_2:10348871-10348890 None:intergenic 15.0%
!!! CAACTTTAAATATTAGATTT+TGG - chr4_2:10348876-10348895 None:intergenic 15.0%
!! GAAAAAGAAAAAAGTTAATT+TGG + chr4_2:10349593-10349612 Msa0588150:CDS 15.0%
!! AAGAAAATAAGTCCAAATTA+AGG + chr4_2:10345583-10345602 Msa0588150:five_prime_UTR 20.0%
!! AAAATTCTTCTTACAAATCT+TGG + chr4_2:10345681-10345700 Msa0588150:intron 20.0%
!!! AAATTTTTTAAGTAAGAGCT+AGG + chr4_2:10345778-10345797 Msa0588150:intron 20.0%
!! TAACAAGCTTAAAAAAATTG+TGG - chr4_2:10345870-10345889 Msa0588160:CDS 20.0%
!!! TCTAATTTGTTGAAATATGA+TGG + chr4_2:10346776-10346795 Msa0588150:intron 20.0%
!! GAAGTTTACTATAACAAATA+TGG - chr4_2:10347077-10347096 None:intergenic 20.0%
!! TCCAACAAAATTTATAGTAA+AGG + chr4_2:10347401-10347420 Msa0588150:intron 20.0%
!!! TGAGATTCAGTTTTATATTT+GGG - chr4_2:10347449-10347468 None:intergenic 20.0%
!!! TTGAGATTCAGTTTTATATT+TGG - chr4_2:10347450-10347469 None:intergenic 20.0%
!!! TTTTTGAATTAGGTGTATTT+GGG - chr4_2:10348780-10348799 None:intergenic 20.0%
!!! TCTCAATTTTTTTGTCTTAT+AGG - chr4_2:10348820-10348839 None:intergenic 20.0%
!! CTAAAACTTTGTACAAATTA+AGG + chr4_2:10348921-10348940 Msa0588150:intron 20.0%
!!! ATTTGGACTTATTTTCTTTA+CGG - chr4_2:10345581-10345600 None:intergenic 20.0%
!! AAGAAAATAAGTCCAAATTA+AGG + chr4_2:10345583-10345602 Msa0588150:five_prime_UTR 20.0%
!!! AGAATTCTTCTTACAAATTT+TGG + chr4_2:10349072-10349091 Msa0588150:five_prime_UTR 20.0%
!! TAACAAGCTTAAAAAAATTG+TGG - chr4_2:10345870-10345889 Msa0588160:CDS 20.0%
!! AAGAAAATAAGTCCAAATTA+AGG + chr4_2:10345583-10345602 Msa0588150:five_prime_UTR 20.0%
!! AAAATTCTTCTTACAAATCT+TGG + chr4_2:10345681-10345700 Msa0588150:intron 20.0%
!!! AAATTTTTTAAGTAAGAGCT+AGG + chr4_2:10345778-10345797 Msa0588150:intron 20.0%
!! TAACAAGCTTAAAAAAATTG+TGG - chr4_2:10345870-10345889 Msa0588160:CDS 20.0%
!!! TCTAATTTGTTGAAATATGA+TGG + chr4_2:10346776-10346795 Msa0588150:intron 20.0%
!! GAAGTTTACTATAACAAATA+TGG - chr4_2:10347077-10347096 None:intergenic 20.0%
!! TCCAACAAAATTTATAGTAA+AGG + chr4_2:10347401-10347420 Msa0588150:intron 20.0%
!!! TGAGATTCAGTTTTATATTT+GGG - chr4_2:10347449-10347468 None:intergenic 20.0%
!!! TTGAGATTCAGTTTTATATT+TGG - chr4_2:10347450-10347469 None:intergenic 20.0%
!!! TTTTTGAATTAGGTGTATTT+GGG - chr4_2:10348780-10348799 None:intergenic 20.0%
!!! TCTCAATTTTTTTGTCTTAT+AGG - chr4_2:10348820-10348839 None:intergenic 20.0%
!! CTAAAACTTTGTACAAATTA+AGG + chr4_2:10348921-10348940 Msa0588150:intron 20.0%
!!! ATTTGGACTTATTTTCTTTA+CGG - chr4_2:10345581-10345600 None:intergenic 20.0%
!! AAGAAAATAAGTCCAAATTA+AGG + chr4_2:10345583-10345602 Msa0588150:five_prime_UTR 20.0%
!!! AGAATTCTTCTTACAAATTT+TGG + chr4_2:10349072-10349091 Msa0588150:five_prime_UTR 20.0%
!! TAACAAGCTTAAAAAAATTG+TGG - chr4_2:10345870-10345889 Msa0588160:CDS 20.0%
! TGTAATTGAGTTCCTTAATT+TGG - chr4_2:10345598-10345617 None:intergenic 25.0%
!!! AAGAAGAATTTTTGAAGTGA+TGG - chr4_2:10345673-10345692 None:intergenic 25.0%
! AATGACCTTGAAAAATTATC+AGG + chr4_2:10345730-10345749 Msa0588150:intron 25.0%
! ATGACCTTGAAAAATTATCA+GGG + chr4_2:10345731-10345750 Msa0588150:intron 25.0%
! AGATAAAGAAAGAAAAGAAG+AGG - chr4_2:10345843-10345862 Msa0588160:CDS 25.0%
! TAAAATGGTTTAAGGAATCA+AGG + chr4_2:10346037-10346056 Msa0588150:intron 25.0%
!! TGAAAAGGAATTTTTATTGC+TGG - chr4_2:10346235-10346254 None:intergenic 25.0%
! GTTTGAAAACATTCATTGTT+TGG - chr4_2:10346375-10346394 None:intergenic 25.0%
! AAAAAAAAATATCCGTAGCT+AGG - chr4_2:10346406-10346425 None:intergenic 25.0%
!!! TAGCTACGGATATTTTTTTT+TGG + chr4_2:10346405-10346424 Msa0588150:intron 25.0%
!!! AGCTACGGATATTTTTTTTT+GGG + chr4_2:10346406-10346425 Msa0588150:intron 25.0%
!! TTTGGGATAAAAATATCAGT+TGG + chr4_2:10346423-10346442 Msa0588150:intron 25.0%
!! GTTAAGTTTTCTTTCATTTG+AGG - chr4_2:10346476-10346495 None:intergenic 25.0%
! ATTAATGAACTTCAATGGAT+TGG - chr4_2:10346615-10346634 None:intergenic 25.0%
! AATAAACTAATTAAGGGAGT+GGG - chr4_2:10346650-10346669 None:intergenic 25.0%
! AAATAAACTAATTAAGGGAG+TGG - chr4_2:10346651-10346670 None:intergenic 25.0%
! ATAAACTAGTGTGTTCTTAT+TGG + chr4_2:10346692-10346711 Msa0588150:intron 25.0%
!!! TATAATGAGTGTTACTTGTT+AGG + chr4_2:10346836-10346855 Msa0588150:intron 25.0%
! CCTAATACAAAATAGAGTAA+TGG - chr4_2:10346917-10346936 None:intergenic 25.0%
!! CCATTACTCTATTTTGTATT+AGG + chr4_2:10346914-10346933 Msa0588150:intron 25.0%
!! AATCTCATTTTGTGAATCTT+TGG + chr4_2:10346988-10347007 Msa0588150:intron 25.0%
! ACTAACTAACTTCTAACAAA+TGG - chr4_2:10347183-10347202 None:intergenic 25.0%
! AGTTAGTTAGTTAAAGACTT+TGG + chr4_2:10347192-10347211 Msa0588150:intron 25.0%
! AAAGAGATTAGAGAAAGTTT+GGG - chr4_2:10347335-10347354 None:intergenic 25.0%
! AAAAGAGATTAGAGAAAGTT+TGG - chr4_2:10347336-10347355 None:intergenic 25.0%
!! GCCTTTACTATAAATTTTGT+TGG - chr4_2:10347405-10347424 None:intergenic 25.0%
!!! TTCAGTTTTATATTTGGGTT+AGG - chr4_2:10347444-10347463 None:intergenic 25.0%
!!! AAAAGTATCTCCCATAAAAT+TGG + chr4_2:10348071-10348090 Msa0588150:intron 25.0%
!!! CAGATTTGTTCCAATTTTAT+GGG - chr4_2:10348084-10348103 None:intergenic 25.0%
!!! TCAGATTTGTTCCAATTTTA+TGG - chr4_2:10348085-10348104 None:intergenic 25.0%
!!! TTTTTCGGAAACGTATTTTT+GGG - chr4_2:10348108-10348127 None:intergenic 25.0%
!!! ATTTTTCGGAAACGTATTTT+TGG - chr4_2:10348109-10348128 None:intergenic 25.0%
! TTTGCTGAAATTACAAATCA+GGG - chr4_2:10348242-10348261 None:intergenic 25.0%
!! ATTTCAGCAAACATCAATTT+TGG + chr4_2:10348251-10348270 Msa0588150:intron 25.0%
! TTTGACTACTGTAAACTTAA+CGG - chr4_2:10348359-10348378 None:intergenic 25.0%
!! GTTTTTGAATTAGGTGTATT+TGG - chr4_2:10348781-10348800 None:intergenic 25.0%
! TGTAATTGAGTTCCTTAATT+TGG - chr4_2:10345598-10345617 None:intergenic 25.0%
!!! GATGGATTATGAAGAAATAT+TGG - chr4_2:10349047-10349066 Msa0588170:CDS 25.0%
!! ATTCTTCTTACAAATTTTGG+AGG + chr4_2:10349075-10349094 Msa0588150:five_prime_UTR 25.0%
! AATGACCTTGAAAAATTATC+AGG + chr4_2:10345730-10345749 Msa0588150:intron 25.0%
! ATGACCTTGAAAAATTATCA+GGG + chr4_2:10345731-10345750 Msa0588150:intron 25.0%
! TACTTACAAAACTTTGATGA+TGG - chr4_2:10349160-10349179 Msa0588170:CDS 25.0%
! CTAGAATCATATAGAAAAAC+TGG + chr4_2:10349184-10349203 Msa0588150:five_prime_UTR 25.0%
! AGATTAAGAAAGAAAAGAAG+AGG - chr4_2:10349231-10349250 Msa0588170:CDS 25.0%
!! TTTAAGGAATCAAGTTTGTT+TGG + chr4_2:10349433-10349452 Msa0588150:intron 25.0%
! GAAAAAAGGAAAAGAAAAGT+GGG - chr4_2:10349513-10349532 None:intergenic 25.0%
! TGAAAAAAGGAAAAGAAAAG+TGG - chr4_2:10349514-10349533 None:intergenic 25.0%
!! TGAAAAGGAATTTTTATTGC+TGG - chr4_2:10346235-10346254 None:intergenic 25.0%
! TGTAATTGAGTTCCTTAATT+TGG - chr4_2:10345598-10345617 None:intergenic 25.0%
!!! AAGAAGAATTTTTGAAGTGA+TGG - chr4_2:10345673-10345692 None:intergenic 25.0%
! AATGACCTTGAAAAATTATC+AGG + chr4_2:10345730-10345749 Msa0588150:intron 25.0%
! ATGACCTTGAAAAATTATCA+GGG + chr4_2:10345731-10345750 Msa0588150:intron 25.0%
! AGATAAAGAAAGAAAAGAAG+AGG - chr4_2:10345843-10345862 Msa0588160:CDS 25.0%
! TAAAATGGTTTAAGGAATCA+AGG + chr4_2:10346037-10346056 Msa0588150:intron 25.0%
!! TGAAAAGGAATTTTTATTGC+TGG - chr4_2:10346235-10346254 None:intergenic 25.0%
! GTTTGAAAACATTCATTGTT+TGG - chr4_2:10346375-10346394 None:intergenic 25.0%
! AAAAAAAAATATCCGTAGCT+AGG - chr4_2:10346406-10346425 None:intergenic 25.0%
!!! TAGCTACGGATATTTTTTTT+TGG + chr4_2:10346405-10346424 Msa0588150:intron 25.0%
!!! AGCTACGGATATTTTTTTTT+GGG + chr4_2:10346406-10346425 Msa0588150:intron 25.0%
!! TTTGGGATAAAAATATCAGT+TGG + chr4_2:10346423-10346442 Msa0588150:intron 25.0%
!! GTTAAGTTTTCTTTCATTTG+AGG - chr4_2:10346476-10346495 None:intergenic 25.0%
! ATTAATGAACTTCAATGGAT+TGG - chr4_2:10346615-10346634 None:intergenic 25.0%
! AATAAACTAATTAAGGGAGT+GGG - chr4_2:10346650-10346669 None:intergenic 25.0%
! AAATAAACTAATTAAGGGAG+TGG - chr4_2:10346651-10346670 None:intergenic 25.0%
! ATAAACTAGTGTGTTCTTAT+TGG + chr4_2:10346692-10346711 Msa0588150:intron 25.0%
!!! TATAATGAGTGTTACTTGTT+AGG + chr4_2:10346836-10346855 Msa0588150:intron 25.0%
! CCTAATACAAAATAGAGTAA+TGG - chr4_2:10346917-10346936 None:intergenic 25.0%
!! CCATTACTCTATTTTGTATT+AGG + chr4_2:10346914-10346933 Msa0588150:intron 25.0%
!! AATCTCATTTTGTGAATCTT+TGG + chr4_2:10346988-10347007 Msa0588150:intron 25.0%
! ACTAACTAACTTCTAACAAA+TGG - chr4_2:10347183-10347202 None:intergenic 25.0%
! AGTTAGTTAGTTAAAGACTT+TGG + chr4_2:10347192-10347211 Msa0588150:intron 25.0%
! AAAGAGATTAGAGAAAGTTT+GGG - chr4_2:10347335-10347354 None:intergenic 25.0%
! AAAAGAGATTAGAGAAAGTT+TGG - chr4_2:10347336-10347355 None:intergenic 25.0%
!! GCCTTTACTATAAATTTTGT+TGG - chr4_2:10347405-10347424 None:intergenic 25.0%
!!! TTCAGTTTTATATTTGGGTT+AGG - chr4_2:10347444-10347463 None:intergenic 25.0%
!!! AAAAGTATCTCCCATAAAAT+TGG + chr4_2:10348071-10348090 Msa0588150:intron 25.0%
!!! CAGATTTGTTCCAATTTTAT+GGG - chr4_2:10348084-10348103 None:intergenic 25.0%
!!! TCAGATTTGTTCCAATTTTA+TGG - chr4_2:10348085-10348104 None:intergenic 25.0%
!!! TTTTTCGGAAACGTATTTTT+GGG - chr4_2:10348108-10348127 None:intergenic 25.0%
!!! ATTTTTCGGAAACGTATTTT+TGG - chr4_2:10348109-10348128 None:intergenic 25.0%
! TTTGCTGAAATTACAAATCA+GGG - chr4_2:10348242-10348261 None:intergenic 25.0%
!! ATTTCAGCAAACATCAATTT+TGG + chr4_2:10348251-10348270 Msa0588150:intron 25.0%
! TTTGACTACTGTAAACTTAA+CGG - chr4_2:10348359-10348378 None:intergenic 25.0%
!! GTTTTTGAATTAGGTGTATT+TGG - chr4_2:10348781-10348800 None:intergenic 25.0%
! TGTAATTGAGTTCCTTAATT+TGG - chr4_2:10345598-10345617 None:intergenic 25.0%
!!! GATGGATTATGAAGAAATAT+TGG - chr4_2:10349047-10349066 Msa0588170:CDS 25.0%
!! ATTCTTCTTACAAATTTTGG+AGG + chr4_2:10349075-10349094 Msa0588150:five_prime_UTR 25.0%
! AATGACCTTGAAAAATTATC+AGG + chr4_2:10345730-10345749 Msa0588150:intron 25.0%
! ATGACCTTGAAAAATTATCA+GGG + chr4_2:10345731-10345750 Msa0588150:intron 25.0%
! TACTTACAAAACTTTGATGA+TGG - chr4_2:10349160-10349179 Msa0588170:CDS 25.0%
! CTAGAATCATATAGAAAAAC+TGG + chr4_2:10349184-10349203 Msa0588150:five_prime_UTR 25.0%
! AGATTAAGAAAGAAAAGAAG+AGG - chr4_2:10349231-10349250 Msa0588170:CDS 25.0%
!! TTTAAGGAATCAAGTTTGTT+TGG + chr4_2:10349433-10349452 Msa0588150:intron 25.0%
! GAAAAAAGGAAAAGAAAAGT+GGG - chr4_2:10349513-10349532 None:intergenic 25.0%
! TGAAAAAAGGAAAAGAAAAG+TGG - chr4_2:10349514-10349533 None:intergenic 25.0%
!! TGAAAAGGAATTTTTATTGC+TGG - chr4_2:10346235-10346254 None:intergenic 25.0%
ATTCTTCTTACAAATCTTGG+AGG + chr4_2:10345684-10345703 Msa0588150:intron 30.0%
! TTAGACAGTTGCAATTTTCA+AGG + chr4_2:10345980-10345999 Msa0588150:intron 30.0%
! TTTAAGGAATCAAGGTGTTT+GGG + chr4_2:10346045-10346064 Msa0588150:intron 30.0%
ATCGCTATATAAATAGCCTT+CGG - chr4_2:10346094-10346113 None:intergenic 30.0%
ATCTGAAAAAAGGGAAAGAA+AGG - chr4_2:10346128-10346147 None:intergenic 30.0%
TGATGAGGAATCTGAAAAAA+GGG - chr4_2:10346137-10346156 None:intergenic 30.0%
GAGGAAGTTGTCTATTAATT+AGG - chr4_2:10346457-10346476 None:intergenic 30.0%
GGCAAATTAATGAACTTCAA+TGG - chr4_2:10346620-10346639 None:intergenic 30.0%
! TTCACACATCAAGTTGTTAT+TGG - chr4_2:10347578-10347597 None:intergenic 30.0%
!! TTGTTCCATACACTTTGTTT+TGG - chr4_2:10347620-10347639 None:intergenic 30.0%
!! AAGAATTTGTTGACTCAGTT+CGG + chr4_2:10347693-10347712 Msa0588150:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG - chr4_2:10347752-10347771 None:intergenic 30.0%
GGGTAGAATTAAACACTATT+AGG - chr4_2:10347864-10347883 None:intergenic 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - chr4_2:10347972-10347991 None:intergenic 30.0%
AGGGTTTAGAAATCAAACTA+GGG - chr4_2:10347995-10348014 None:intergenic 30.0%
AAGGGTTTAGAAATCAAACT+AGG - chr4_2:10347996-10348015 None:intergenic 30.0%
! GTTTGCTGAAATTACAAATC+AGG - chr4_2:10348243-10348262 None:intergenic 30.0%
TTGTGAAAGTGACTCAAAAT+TGG - chr4_2:10348287-10348306 None:intergenic 30.0%
!! TGTTTTCATTGGTTAAGATG+TGG - chr4_2:10348407-10348426 None:intergenic 30.0%
AATTTGCATTGCCAAAAACA+CGG + chr4_2:10348592-10348611 Msa0588150:intron 30.0%
!! TAAGAAGAATTCTGAAGTGA+TGG - chr4_2:10349065-10349084 Msa0588170:CDS 30.0%
!! TTCTTACAAATTTTGGAGGA+CGG + chr4_2:10349079-10349098 Msa0588150:five_prime_UTR 30.0%
TGAATGTGTCAATGAACTTA+TGG - chr4_2:10349293-10349312 Msa0588170:CDS 30.0%
AGTTCATTGACACATTCAAT+AGG + chr4_2:10349295-10349314 Msa0588150:five_prime_UTR 30.0%
!! GCTTAAGAAACAAAAGCATT+TGG - chr4_2:10349348-10349367 Msa0588170:CDS 30.0%
! ATGAGTTAGGAAGCATAAAA+TGG + chr4_2:10349410-10349429 Msa0588150:CDS 30.0%
! AGGAAGCATAAAATGGTTTA+AGG + chr4_2:10349417-10349436 Msa0588150:CDS 30.0%
GAAGGCTATTTATATAGTGA+TGG + chr4_2:10349482-10349501 Msa0588150:intron 30.0%
ATTCTTCTTACAAATCTTGG+AGG + chr4_2:10345684-10345703 Msa0588150:intron 30.0%
! TTAGACAGTTGCAATTTTCA+AGG + chr4_2:10345980-10345999 Msa0588150:intron 30.0%
! TTTAAGGAATCAAGGTGTTT+GGG + chr4_2:10346045-10346064 Msa0588150:intron 30.0%
ATCGCTATATAAATAGCCTT+CGG - chr4_2:10346094-10346113 None:intergenic 30.0%
ATCTGAAAAAAGGGAAAGAA+AGG - chr4_2:10346128-10346147 None:intergenic 30.0%
TGATGAGGAATCTGAAAAAA+GGG - chr4_2:10346137-10346156 None:intergenic 30.0%
GAGGAAGTTGTCTATTAATT+AGG - chr4_2:10346457-10346476 None:intergenic 30.0%
GGCAAATTAATGAACTTCAA+TGG - chr4_2:10346620-10346639 None:intergenic 30.0%
! TTCACACATCAAGTTGTTAT+TGG - chr4_2:10347578-10347597 None:intergenic 30.0%
!! TTGTTCCATACACTTTGTTT+TGG - chr4_2:10347620-10347639 None:intergenic 30.0%
!! AAGAATTTGTTGACTCAGTT+CGG + chr4_2:10347693-10347712 Msa0588150:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG - chr4_2:10347752-10347771 None:intergenic 30.0%
GGGTAGAATTAAACACTATT+AGG - chr4_2:10347864-10347883 None:intergenic 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - chr4_2:10347972-10347991 None:intergenic 30.0%
AGGGTTTAGAAATCAAACTA+GGG - chr4_2:10347995-10348014 None:intergenic 30.0%
AAGGGTTTAGAAATCAAACT+AGG - chr4_2:10347996-10348015 None:intergenic 30.0%
! GTTTGCTGAAATTACAAATC+AGG - chr4_2:10348243-10348262 None:intergenic 30.0%
TTGTGAAAGTGACTCAAAAT+TGG - chr4_2:10348287-10348306 None:intergenic 30.0%
!! TGTTTTCATTGGTTAAGATG+TGG - chr4_2:10348407-10348426 None:intergenic 30.0%
AATTTGCATTGCCAAAAACA+CGG + chr4_2:10348592-10348611 Msa0588150:intron 30.0%
!! TAAGAAGAATTCTGAAGTGA+TGG - chr4_2:10349065-10349084 Msa0588170:CDS 30.0%
!! TTCTTACAAATTTTGGAGGA+CGG + chr4_2:10349079-10349098 Msa0588150:five_prime_UTR 30.0%
TGAATGTGTCAATGAACTTA+TGG - chr4_2:10349293-10349312 Msa0588170:CDS 30.0%
AGTTCATTGACACATTCAAT+AGG + chr4_2:10349295-10349314 Msa0588150:five_prime_UTR 30.0%
!! GCTTAAGAAACAAAAGCATT+TGG - chr4_2:10349348-10349367 Msa0588170:CDS 30.0%
! ATGAGTTAGGAAGCATAAAA+TGG + chr4_2:10349410-10349429 Msa0588150:CDS 30.0%
! AGGAAGCATAAAATGGTTTA+AGG + chr4_2:10349417-10349436 Msa0588150:CDS 30.0%
GAAGGCTATTTATATAGTGA+TGG + chr4_2:10349482-10349501 Msa0588150:intron 30.0%
ATAAACGAAGAGAGTTAGCT+AGG - chr4_2:10345630-10345649 None:intergenic 35.0%
TTCTTACAAATCTTGGAGGA+CGG + chr4_2:10345688-10345707 Msa0588150:intron 35.0%
! CTGACCCTGATAATTTTTCA+AGG - chr4_2:10345738-10345757 Msa0588160:CDS 35.0%
TGAAAAATTATCAGGGTCAG+AGG + chr4_2:10345738-10345757 Msa0588150:intron 35.0%
CTAGGATCATATAGAAACAC+AGG + chr4_2:10345796-10345815 Msa0588150:intron 35.0%
TGTACGTGTCAATGAACTTA+TGG - chr4_2:10345905-10345924 Msa0588160:CDS 35.0%
AGTTCATTGACACGTACAAT+AGG + chr4_2:10345907-10345926 Msa0588150:intron 35.0%
GTTCATTGACACGTACAATA+GGG + chr4_2:10345908-10345927 Msa0588150:intron 35.0%
TGGTCAAGTTATGAGAGAAT+TGG - chr4_2:10345940-10345959 Msa0588160:CDS 35.0%
! AAGACATAGGAGGCATAAAA+TGG + chr4_2:10346022-10346041 Msa0588150:intron 35.0%
! AGGAGGCATAAAATGGTTTA+AGG + chr4_2:10346029-10346048 Msa0588150:intron 35.0%
! GTTTAAGGAATCAAGGTGTT+TGG + chr4_2:10346044-10346063 Msa0588150:intron 35.0%
! TTAAGGAATCAAGGTGTTTG+GGG + chr4_2:10346046-10346065 Msa0588150:intron 35.0%
GAAGGCTATTTATATAGCGA+TGG + chr4_2:10346093-10346112 Msa0588150:intron 35.0%
TGAAAAAAGGGAAAGAAAGG+TGG - chr4_2:10346125-10346144 None:intergenic 35.0%
GTGATGAGGAATCTGAAAAA+AGG - chr4_2:10346138-10346157 None:intergenic 35.0%
! GCATATGCTTTGAACTAGAT+AGG + chr4_2:10346170-10346189 Msa0588150:intron 35.0%
!! CTTGATTTGCTGACATGAAA+AGG - chr4_2:10346250-10346269 None:intergenic 35.0%
TACGTTGTAATACAGTCACT+AGG - chr4_2:10346301-10346320 None:intergenic 35.0%
AAAAATATCCGTAGCTAGGT+AGG - chr4_2:10346402-10346421 None:intergenic 35.0%
TTTGGCTGTAAAGTTGCTAT+AGG + chr4_2:10347210-10347229 Msa0588150:intron 35.0%
AGCAACCAAAACAAAGTGTA+TGG + chr4_2:10347612-10347631 Msa0588150:intron 35.0%
!! CTCTCGTTGTTTTCTACTTT+TGG - chr4_2:10347656-10347675 None:intergenic 35.0%
! TACTCATCATATAGTGGAAC+GGG - chr4_2:10347751-10347770 None:intergenic 35.0%
CAACGTTACTCATCATATAG+TGG - chr4_2:10347757-10347776 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr4_2:10347850-10347869 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr4_2:10347850-10347869 None:intergenic 35.0%
AATCCTAATAGTGTTTCCCA+AGG + chr4_2:10347917-10347936 Msa0588150:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG - chr4_2:10347936-10347955 None:intergenic 35.0%
TCCCAAAAACAGCCAAAATT+GGG + chr4_2:10348195-10348214 Msa0588150:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG - chr4_2:10348280-10348299 None:intergenic 35.0%
CGGTTACTAGGATCAAAAAA+AGG - chr4_2:10348339-10348358 None:intergenic 35.0%
CTGTAAACTTAACGGTTACT+AGG - chr4_2:10348351-10348370 None:intergenic 35.0%
!! AAGTTTTGCTGATTAGCTAG+AGG + chr4_2:10348378-10348397 Msa0588150:intron 35.0%
!! AGTTTTGCTGATTAGCTAGA+GGG + chr4_2:10348379-10348398 Msa0588150:intron 35.0%
ATTTGCATTGCCAAAAACAC+GGG + chr4_2:10348593-10348612 Msa0588150:intron 35.0%
CCTTGAAAAATTATCAGGGT+CGG + chr4_2:10345735-10345754 Msa0588150:intron 35.0%
CTTGAAAATTGTGACTGTCT+AGG - chr4_2:10349370-10349389 Msa0588170:CDS 35.0%
! CTAGACAGTCACAATTTTCA+AGG + chr4_2:10349368-10349387 Msa0588150:CDS 35.0%
GTGTATAGAGTAGATGAGTT+AGG + chr4_2:10349397-10349416 Msa0588150:CDS 35.0%
!! TGCTCTAAAACTAAGACTGA+AGG + chr4_2:10349464-10349483 Msa0588150:intron 35.0%
GTGATGAGGAAACTGAAAAA+AGG - chr4_2:10349527-10349546 None:intergenic 35.0%
TCAAAGTATATGCATTGCTG+AGG - chr4_2:10349552-10349571 None:intergenic 35.0%
ATAAACGAAGAGAGTTAGCT+AGG - chr4_2:10345630-10345649 None:intergenic 35.0%
TTCTTACAAATCTTGGAGGA+CGG + chr4_2:10345688-10345707 Msa0588150:intron 35.0%
! CTGACCCTGATAATTTTTCA+AGG - chr4_2:10345738-10345757 Msa0588160:CDS 35.0%
TGAAAAATTATCAGGGTCAG+AGG + chr4_2:10345738-10345757 Msa0588150:intron 35.0%
CTAGGATCATATAGAAACAC+AGG + chr4_2:10345796-10345815 Msa0588150:intron 35.0%
TGTACGTGTCAATGAACTTA+TGG - chr4_2:10345905-10345924 Msa0588160:CDS 35.0%
AGTTCATTGACACGTACAAT+AGG + chr4_2:10345907-10345926 Msa0588150:intron 35.0%
GTTCATTGACACGTACAATA+GGG + chr4_2:10345908-10345927 Msa0588150:intron 35.0%
TGGTCAAGTTATGAGAGAAT+TGG - chr4_2:10345940-10345959 Msa0588160:CDS 35.0%
! AAGACATAGGAGGCATAAAA+TGG + chr4_2:10346022-10346041 Msa0588150:intron 35.0%
! AGGAGGCATAAAATGGTTTA+AGG + chr4_2:10346029-10346048 Msa0588150:intron 35.0%
! GTTTAAGGAATCAAGGTGTT+TGG + chr4_2:10346044-10346063 Msa0588150:intron 35.0%
! TTAAGGAATCAAGGTGTTTG+GGG + chr4_2:10346046-10346065 Msa0588150:intron 35.0%
GAAGGCTATTTATATAGCGA+TGG + chr4_2:10346093-10346112 Msa0588150:intron 35.0%
TGAAAAAAGGGAAAGAAAGG+TGG - chr4_2:10346125-10346144 None:intergenic 35.0%
GTGATGAGGAATCTGAAAAA+AGG - chr4_2:10346138-10346157 None:intergenic 35.0%
! GCATATGCTTTGAACTAGAT+AGG + chr4_2:10346170-10346189 Msa0588150:intron 35.0%
!! CTTGATTTGCTGACATGAAA+AGG - chr4_2:10346250-10346269 None:intergenic 35.0%
TACGTTGTAATACAGTCACT+AGG - chr4_2:10346301-10346320 None:intergenic 35.0%
AAAAATATCCGTAGCTAGGT+AGG - chr4_2:10346402-10346421 None:intergenic 35.0%
TTTGGCTGTAAAGTTGCTAT+AGG + chr4_2:10347210-10347229 Msa0588150:intron 35.0%
AGCAACCAAAACAAAGTGTA+TGG + chr4_2:10347612-10347631 Msa0588150:intron 35.0%
!! CTCTCGTTGTTTTCTACTTT+TGG - chr4_2:10347656-10347675 None:intergenic 35.0%
! TACTCATCATATAGTGGAAC+GGG - chr4_2:10347751-10347770 None:intergenic 35.0%
CAACGTTACTCATCATATAG+TGG - chr4_2:10347757-10347776 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr4_2:10347850-10347869 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr4_2:10347850-10347869 None:intergenic 35.0%
AATCCTAATAGTGTTTCCCA+AGG + chr4_2:10347917-10347936 Msa0588150:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG - chr4_2:10347936-10347955 None:intergenic 35.0%
TCCCAAAAACAGCCAAAATT+GGG + chr4_2:10348195-10348214 Msa0588150:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG - chr4_2:10348280-10348299 None:intergenic 35.0%
CGGTTACTAGGATCAAAAAA+AGG - chr4_2:10348339-10348358 None:intergenic 35.0%
CTGTAAACTTAACGGTTACT+AGG - chr4_2:10348351-10348370 None:intergenic 35.0%
!! AAGTTTTGCTGATTAGCTAG+AGG + chr4_2:10348378-10348397 Msa0588150:intron 35.0%
!! AGTTTTGCTGATTAGCTAGA+GGG + chr4_2:10348379-10348398 Msa0588150:intron 35.0%
ATTTGCATTGCCAAAAACAC+GGG + chr4_2:10348593-10348612 Msa0588150:intron 35.0%
CCTTGAAAAATTATCAGGGT+CGG + chr4_2:10345735-10345754 Msa0588150:intron 35.0%
CTTGAAAATTGTGACTGTCT+AGG - chr4_2:10349370-10349389 Msa0588170:CDS 35.0%
! CTAGACAGTCACAATTTTCA+AGG + chr4_2:10349368-10349387 Msa0588150:CDS 35.0%
GTGTATAGAGTAGATGAGTT+AGG + chr4_2:10349397-10349416 Msa0588150:CDS 35.0%
!! TGCTCTAAAACTAAGACTGA+AGG + chr4_2:10349464-10349483 Msa0588150:intron 35.0%
GTGATGAGGAAACTGAAAAA+AGG - chr4_2:10349527-10349546 None:intergenic 35.0%
TCAAAGTATATGCATTGCTG+AGG - chr4_2:10349552-10349571 None:intergenic 35.0%
GCTCAAGAAACAACTGCATT+TGG - chr4_2:10345960-10345979 Msa0588160:CDS 40.0%
!! GTTGCAATTTTCAAGGTCCA+TGG + chr4_2:10345987-10346006 Msa0588150:intron 40.0%
!! TTTTCAAGGTCCATGGTGTA+TGG + chr4_2:10345994-10346013 Msa0588150:intron 40.0%
GTGTATGGAGTAGAAGACAT+AGG + chr4_2:10346009-10346028 Msa0588150:intron 40.0%
TATGGAGTAGAAGACATAGG+AGG + chr4_2:10346012-10346031 Msa0588150:intron 40.0%
!! TGCTCTAAAACTAAGACCGA+AGG + chr4_2:10346075-10346094 Msa0588150:intron 40.0%
TCAAAGCATATGCATTGCTG+AGG - chr4_2:10346163-10346182 None:intergenic 40.0%
AACGTAGTCACATGTGACAT+GGG + chr4_2:10346315-10346334 Msa0588150:intron 40.0%
ACAACTTGATGTGTGAAGCA+AGG + chr4_2:10347581-10347600 Msa0588150:intron 40.0%
CAACTTGATGTGTGAAGCAA+GGG + chr4_2:10347582-10347601 Msa0588150:intron 40.0%
TGATGAGTAACGTTGCAAAG+AGG + chr4_2:10347762-10347781 Msa0588150:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr4_2:10347844-10347863 None:intergenic 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr4_2:10347844-10347863 None:intergenic 40.0%
TCACCTTGGGAAACACTATT+AGG - chr4_2:10347923-10347942 None:intergenic 40.0%
! GTTTGAAGGTTGATTCACCT+TGG - chr4_2:10347937-10347956 None:intergenic 40.0%
TGTCTCTTGGCAACAAACAA+GGG - chr4_2:10347959-10347978 None:intergenic 40.0%
TTGTCTCTTGGCAACAAACA+AGG - chr4_2:10347960-10347979 None:intergenic 40.0%
GCATTGTATCAGTGTAAACC+GGG - chr4_2:10348038-10348057 None:intergenic 40.0%
GGCATTGTATCAGTGTAAAC+CGG - chr4_2:10348039-10348058 None:intergenic 40.0%
!!! TGTCGCGTGCTGTTATTTTT+CGG - chr4_2:10348123-10348142 None:intergenic 40.0%
AAAATAACAGCACGCGACAT+CGG + chr4_2:10348124-10348143 Msa0588150:intron 40.0%
!! CAGTTTGCTGCGGAAAAAAT+TGG - chr4_2:10348174-10348193 None:intergenic 40.0%
CTCCCAAAAACAGCCAAAAT+TGG + chr4_2:10348194-10348213 Msa0588150:intron 40.0%
!!! GCCCAATTTTGGCTGTTTTT+GGG - chr4_2:10348199-10348218 None:intergenic 40.0%
GACTCAAAATTGGAGTTTGG+AGG - chr4_2:10348277-10348296 None:intergenic 40.0%
! GAGTCACTTTCACAACATGT+TGG + chr4_2:10348292-10348311 Msa0588150:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + chr4_2:10348635-10348654 Msa0588150:intron 40.0%
GTCACCGTGACATTAAATCT+GGG + chr4_2:10348636-10348655 Msa0588150:intron 40.0%
ACACATTGCCACATAACATC+TGG + chr4_2:10348668-10348687 Msa0588150:intron 40.0%
CACATTGCCACATAACATCT+GGG + chr4_2:10348669-10348688 Msa0588150:intron 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr4_2:10348695-10348714 None:intergenic 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_2:10348647-10348666 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_2:10348636-10348655 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_2:10348635-10348654 None:intergenic 40.0%
! CCGACCCTGATAATTTTTCA+AGG - chr4_2:10349129-10349148 Msa0588170:CDS 40.0%
TGAAAAATTATCAGGGTCGG+TGG + chr4_2:10349129-10349148 Msa0588150:five_prime_UTR 40.0%
TGGTCAAGTTACGAGAGAAT+TGG - chr4_2:10349328-10349347 Msa0588170:CDS 40.0%
!! GTCACAATTTTCAAGGTCCA+TGG + chr4_2:10349375-10349394 Msa0588150:CDS 40.0%
CTCATCTACTCTATACACCA+TGG - chr4_2:10349395-10349414 Msa0588170:CDS 40.0%
AAGTATATGCATTGCTGAGG+TGG - chr4_2:10349549-10349568 None:intergenic 40.0%
GCTCAAGAAACAACTGCATT+TGG - chr4_2:10345960-10345979 Msa0588160:CDS 40.0%
!! GTTGCAATTTTCAAGGTCCA+TGG + chr4_2:10345987-10346006 Msa0588150:intron 40.0%
!! TTTTCAAGGTCCATGGTGTA+TGG + chr4_2:10345994-10346013 Msa0588150:intron 40.0%
GTGTATGGAGTAGAAGACAT+AGG + chr4_2:10346009-10346028 Msa0588150:intron 40.0%
TATGGAGTAGAAGACATAGG+AGG + chr4_2:10346012-10346031 Msa0588150:intron 40.0%
!! TGCTCTAAAACTAAGACCGA+AGG + chr4_2:10346075-10346094 Msa0588150:intron 40.0%
TCAAAGCATATGCATTGCTG+AGG - chr4_2:10346163-10346182 None:intergenic 40.0%
AACGTAGTCACATGTGACAT+GGG + chr4_2:10346315-10346334 Msa0588150:intron 40.0%
ACAACTTGATGTGTGAAGCA+AGG + chr4_2:10347581-10347600 Msa0588150:intron 40.0%
CAACTTGATGTGTGAAGCAA+GGG + chr4_2:10347582-10347601 Msa0588150:intron 40.0%
TGATGAGTAACGTTGCAAAG+AGG + chr4_2:10347762-10347781 Msa0588150:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr4_2:10347844-10347863 None:intergenic 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr4_2:10347844-10347863 None:intergenic 40.0%
TCACCTTGGGAAACACTATT+AGG - chr4_2:10347923-10347942 None:intergenic 40.0%
! GTTTGAAGGTTGATTCACCT+TGG - chr4_2:10347937-10347956 None:intergenic 40.0%
TGTCTCTTGGCAACAAACAA+GGG - chr4_2:10347959-10347978 None:intergenic 40.0%
TTGTCTCTTGGCAACAAACA+AGG - chr4_2:10347960-10347979 None:intergenic 40.0%
GCATTGTATCAGTGTAAACC+GGG - chr4_2:10348038-10348057 None:intergenic 40.0%
GGCATTGTATCAGTGTAAAC+CGG - chr4_2:10348039-10348058 None:intergenic 40.0%
!!! TGTCGCGTGCTGTTATTTTT+CGG - chr4_2:10348123-10348142 None:intergenic 40.0%
AAAATAACAGCACGCGACAT+CGG + chr4_2:10348124-10348143 Msa0588150:intron 40.0%
!! CAGTTTGCTGCGGAAAAAAT+TGG - chr4_2:10348174-10348193 None:intergenic 40.0%
CTCCCAAAAACAGCCAAAAT+TGG + chr4_2:10348194-10348213 Msa0588150:intron 40.0%
!!! GCCCAATTTTGGCTGTTTTT+GGG - chr4_2:10348199-10348218 None:intergenic 40.0%
GACTCAAAATTGGAGTTTGG+AGG - chr4_2:10348277-10348296 None:intergenic 40.0%
! GAGTCACTTTCACAACATGT+TGG + chr4_2:10348292-10348311 Msa0588150:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + chr4_2:10348635-10348654 Msa0588150:intron 40.0%
GTCACCGTGACATTAAATCT+GGG + chr4_2:10348636-10348655 Msa0588150:intron 40.0%
ACACATTGCCACATAACATC+TGG + chr4_2:10348668-10348687 Msa0588150:intron 40.0%
CACATTGCCACATAACATCT+GGG + chr4_2:10348669-10348688 Msa0588150:intron 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr4_2:10348695-10348714 None:intergenic 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_2:10348647-10348666 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_2:10348636-10348655 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_2:10348635-10348654 None:intergenic 40.0%
! CCGACCCTGATAATTTTTCA+AGG - chr4_2:10349129-10349148 Msa0588170:CDS 40.0%
TGAAAAATTATCAGGGTCGG+TGG + chr4_2:10349129-10349148 Msa0588150:five_prime_UTR 40.0%
TGGTCAAGTTACGAGAGAAT+TGG - chr4_2:10349328-10349347 Msa0588170:CDS 40.0%
!! GTCACAATTTTCAAGGTCCA+TGG + chr4_2:10349375-10349394 Msa0588150:CDS 40.0%
CTCATCTACTCTATACACCA+TGG - chr4_2:10349395-10349414 Msa0588170:CDS 40.0%
AAGTATATGCATTGCTGAGG+TGG - chr4_2:10349549-10349568 None:intergenic 40.0%
GTCTTCTACTCCATACACCA+TGG - chr4_2:10346007-10346026 Msa0588160:CDS 45.0%
AAGCATATGCATTGCTGAGG+TGG - chr4_2:10346160-10346179 None:intergenic 45.0%
CAACGTAGTCACATGTGACA+TGG + chr4_2:10346314-10346333 Msa0588150:intron 45.0%
AAACACCACCTACCTAGCTA+CGG + chr4_2:10346391-10346410 Msa0588150:intron 45.0%
AATATCCGTAGCTAGGTAGG+TGG - chr4_2:10346399-10346418 None:intergenic 45.0%
ATTAAGGGAGTGGGATGACA+AGG - chr4_2:10346641-10346660 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG + chr4_2:10347714-10347733 Msa0588150:intron 45.0%
GTCCAAATTGACCTAGTCTG+GGG + chr4_2:10347715-10347734 Msa0588150:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG + chr4_2:10347716-10347735 Msa0588150:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - chr4_2:10347811-10347830 None:intergenic 45.0%
GGGATTTGGGTAGAATTAGG+CGG - chr4_2:10347812-10347831 None:intergenic 45.0%
GCTGGGATTTGGGTAGAATT+AGG - chr4_2:10347815-10347834 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr4_2:10347843-10347862 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr4_2:10347843-10347862 None:intergenic 45.0%
GGCAACAAACAAGGGTTTGA+AGG - chr4_2:10347951-10347970 None:intergenic 45.0%
AGTGTAAACCGGGAGATAGA+GGG - chr4_2:10348028-10348047 None:intergenic 45.0%
AAATAACAGCACGCGACATC+GGG + chr4_2:10348125-10348144 Msa0588150:intron 45.0%
!!! TTTTTGGGAGCAGTTTGCTG+CGG - chr4_2:10348184-10348203 None:intergenic 45.0%
!!! GGCCCAATTTTGGCTGTTTT+TGG - chr4_2:10348200-10348219 None:intergenic 45.0%
TGCATGTGTCACGTATGTGT+TGG - chr4_2:10348459-10348478 None:intergenic 45.0%
!! CAAAAACACGGGAAGCACTT+GGG + chr4_2:10348604-10348623 Msa0588150:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr4_2:10348741-10348760 None:intergenic 45.0%
ATGTGGCAATGTGTGTTGTG+TGG - chr4_2:10348662-10348681 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG - chr4_2:10348722-10348741 None:intergenic 45.0%
CACAACACAACACCTTTGTG+TGG + chr4_2:10348722-10348741 Msa0588150:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_2:10348741-10348760 Msa0588150:intron 45.0%
GTCTTCTACTCCATACACCA+TGG - chr4_2:10346007-10346026 Msa0588160:CDS 45.0%
AAGCATATGCATTGCTGAGG+TGG - chr4_2:10346160-10346179 None:intergenic 45.0%
CAACGTAGTCACATGTGACA+TGG + chr4_2:10346314-10346333 Msa0588150:intron 45.0%
AAACACCACCTACCTAGCTA+CGG + chr4_2:10346391-10346410 Msa0588150:intron 45.0%
AATATCCGTAGCTAGGTAGG+TGG - chr4_2:10346399-10346418 None:intergenic 45.0%
ATTAAGGGAGTGGGATGACA+AGG - chr4_2:10346641-10346660 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG + chr4_2:10347714-10347733 Msa0588150:intron 45.0%
GTCCAAATTGACCTAGTCTG+GGG + chr4_2:10347715-10347734 Msa0588150:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG + chr4_2:10347716-10347735 Msa0588150:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - chr4_2:10347811-10347830 None:intergenic 45.0%
GGGATTTGGGTAGAATTAGG+CGG - chr4_2:10347812-10347831 None:intergenic 45.0%
GCTGGGATTTGGGTAGAATT+AGG - chr4_2:10347815-10347834 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr4_2:10347843-10347862 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr4_2:10347843-10347862 None:intergenic 45.0%
GGCAACAAACAAGGGTTTGA+AGG - chr4_2:10347951-10347970 None:intergenic 45.0%
AGTGTAAACCGGGAGATAGA+GGG - chr4_2:10348028-10348047 None:intergenic 45.0%
AAATAACAGCACGCGACATC+GGG + chr4_2:10348125-10348144 Msa0588150:intron 45.0%
!!! TTTTTGGGAGCAGTTTGCTG+CGG - chr4_2:10348184-10348203 None:intergenic 45.0%
!!! GGCCCAATTTTGGCTGTTTT+TGG - chr4_2:10348200-10348219 None:intergenic 45.0%
TGCATGTGTCACGTATGTGT+TGG - chr4_2:10348459-10348478 None:intergenic 45.0%
!! CAAAAACACGGGAAGCACTT+GGG + chr4_2:10348604-10348623 Msa0588150:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr4_2:10348741-10348760 None:intergenic 45.0%
ATGTGGCAATGTGTGTTGTG+TGG - chr4_2:10348662-10348681 None:intergenic 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG - chr4_2:10348722-10348741 None:intergenic 45.0%
CACAACACAACACCTTTGTG+TGG + chr4_2:10348722-10348741 Msa0588150:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_2:10348741-10348760 Msa0588150:intron 45.0%
!!! ATAAAAAGTTTTTTTTTTTA+GGG - chr4_2:10348559-10348578 None:intergenic 5.0%
!!! ATAAAAAGTTTTTTTTTTTA+GGG - chr4_2:10348559-10348578 None:intergenic 5.0%
GTCACATGTGACATGGGTCA+TGG + chr4_2:10346321-10346340 Msa0588150:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG + chr4_2:10347713-10347732 Msa0588150:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG - chr4_2:10347720-10347739 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr4_2:10347837-10347856 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr4_2:10347837-10347856 None:intergenic 50.0%
GATAGAGGGGGCTGAAACAA+GGG - chr4_2:10348014-10348033 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG - chr4_2:10348015-10348034 None:intergenic 50.0%
TGTAAACCGGGAGATAGAGG+GGG - chr4_2:10348026-10348045 None:intergenic 50.0%
GTGTAAACCGGGAGATAGAG+GGG - chr4_2:10348027-10348046 None:intergenic 50.0%
CAGTGTAAACCGGGAGATAG+AGG - chr4_2:10348029-10348048 None:intergenic 50.0%
GGAAAAAATTGGCGCCCGAA+GGG - chr4_2:10348163-10348182 None:intergenic 50.0%
! GCAAAATCGGGGCCCAATTT+TGG - chr4_2:10348210-10348229 None:intergenic 50.0%
TTACAAATCAGGGCCCGAAG+TGG - chr4_2:10348232-10348251 None:intergenic 50.0%
! CCAAGTGCTTCCCGTGTTTT+TGG - chr4_2:10348606-10348625 None:intergenic 50.0%
!! CCAAAAACACGGGAAGCACT+TGG + chr4_2:10348603-10348622 Msa0588150:intron 50.0%
TGTGTGGCCCAGATGTTATG+TGG - chr4_2:10348679-10348698 None:intergenic 50.0%
GTCACATGTGACATGGGTCA+TGG + chr4_2:10346321-10346340 Msa0588150:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG + chr4_2:10347713-10347732 Msa0588150:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG - chr4_2:10347720-10347739 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr4_2:10347837-10347856 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr4_2:10347837-10347856 None:intergenic 50.0%
GATAGAGGGGGCTGAAACAA+GGG - chr4_2:10348014-10348033 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG - chr4_2:10348015-10348034 None:intergenic 50.0%
TGTAAACCGGGAGATAGAGG+GGG - chr4_2:10348026-10348045 None:intergenic 50.0%
GTGTAAACCGGGAGATAGAG+GGG - chr4_2:10348027-10348046 None:intergenic 50.0%
CAGTGTAAACCGGGAGATAG+AGG - chr4_2:10348029-10348048 None:intergenic 50.0%
GGAAAAAATTGGCGCCCGAA+GGG - chr4_2:10348163-10348182 None:intergenic 50.0%
! GCAAAATCGGGGCCCAATTT+TGG - chr4_2:10348210-10348229 None:intergenic 50.0%
TTACAAATCAGGGCCCGAAG+TGG - chr4_2:10348232-10348251 None:intergenic 50.0%
! CCAAGTGCTTCCCGTGTTTT+TGG - chr4_2:10348606-10348625 None:intergenic 50.0%
!! CCAAAAACACGGGAAGCACT+TGG + chr4_2:10348603-10348622 Msa0588150:intron 50.0%
TGTGTGGCCCAGATGTTATG+TGG - chr4_2:10348679-10348698 None:intergenic 50.0%
! GCATTGCTGAGGTGGTGATG+AGG - chr4_2:10346152-10346171 None:intergenic 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - chr4_2:10347825-10347844 None:intergenic 55.0%
TACGGGAAGAGGCTGGGATT+TGG - chr4_2:10347826-10347845 None:intergenic 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - chr4_2:10347832-10347851 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - chr4_2:10347833-10347852 None:intergenic 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - chr4_2:10347825-10347844 None:intergenic 55.0%
TACGGGAAGAGGCTGGGATT+TGG - chr4_2:10347826-10347845 None:intergenic 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - chr4_2:10347832-10347851 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - chr4_2:10347833-10347852 None:intergenic 55.0%
TTTCAGCCCCCTCTATCTCC+CGG + chr4_2:10348017-10348036 Msa0588150:intron 55.0%
! GGGCCTCGATTTTCACCCTT+CGG + chr4_2:10348145-10348164 Msa0588150:intron 55.0%
! GGCCTCGATTTTCACCCTTC+GGG + chr4_2:10348146-10348165 Msa0588150:intron 55.0%
CGGAAAAAATTGGCGCCCGA+AGG - chr4_2:10348164-10348183 None:intergenic 55.0%
AGGGCCCGAAGTGGCAAAAT+CGG - chr4_2:10348223-10348242 None:intergenic 55.0%
! GCATTGCTGAGGTGGTGATG+AGG - chr4_2:10346152-10346171 None:intergenic 55.0%
! GCATTGCTGAGGTGGTGATG+AGG - chr4_2:10346152-10346171 None:intergenic 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - chr4_2:10347825-10347844 None:intergenic 55.0%
TACGGGAAGAGGCTGGGATT+TGG - chr4_2:10347826-10347845 None:intergenic 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - chr4_2:10347832-10347851 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - chr4_2:10347833-10347852 None:intergenic 55.0%
ACGGGAAGAGGCTGGGATTT+GGG - chr4_2:10347825-10347844 None:intergenic 55.0%
TACGGGAAGAGGCTGGGATT+TGG - chr4_2:10347826-10347845 None:intergenic 55.0%
CTTGGTTACGGGAAGAGGCT+GGG - chr4_2:10347832-10347851 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG - chr4_2:10347833-10347852 None:intergenic 55.0%
TTTCAGCCCCCTCTATCTCC+CGG + chr4_2:10348017-10348036 Msa0588150:intron 55.0%
! GGGCCTCGATTTTCACCCTT+CGG + chr4_2:10348145-10348164 Msa0588150:intron 55.0%
! GGCCTCGATTTTCACCCTTC+GGG + chr4_2:10348146-10348165 Msa0588150:intron 55.0%
CGGAAAAAATTGGCGCCCGA+AGG - chr4_2:10348164-10348183 None:intergenic 55.0%
AGGGCCCGAAGTGGCAAAAT+CGG - chr4_2:10348223-10348242 None:intergenic 55.0%
! GCATTGCTGAGGTGGTGATG+AGG - chr4_2:10346152-10346171 None:intergenic 55.0%
CGCCCGAAGGGTGAAAATCG+AGG - chr4_2:10348151-10348170 None:intergenic 60.0%
!! GGGCCCCGATTTTGCCACTT+CGG + chr4_2:10348215-10348234 Msa0588150:intron 60.0%
!! GGCCCCGATTTTGCCACTTC+GGG + chr4_2:10348216-10348235 Msa0588150:intron 60.0%
GGCCCGAAGTGGCAAAATCG+GGG - chr4_2:10348221-10348240 None:intergenic 60.0%
GGGCCCGAAGTGGCAAAATC+GGG - chr4_2:10348222-10348241 None:intergenic 60.0%
CGCCCGAAGGGTGAAAATCG+AGG - chr4_2:10348151-10348170 None:intergenic 60.0%
!! GGGCCCCGATTTTGCCACTT+CGG + chr4_2:10348215-10348234 Msa0588150:intron 60.0%
!! GGCCCCGATTTTGCCACTTC+GGG + chr4_2:10348216-10348235 Msa0588150:intron 60.0%
GGCCCGAAGTGGCAAAATCG+GGG - chr4_2:10348221-10348240 None:intergenic 60.0%
GGGCCCGAAGTGGCAAAATC+GGG - chr4_2:10348222-10348241 None:intergenic 60.0%
GCTGCTCTCTCCCCCAGACT+AGG - chr4_2:10347729-10347748 None:intergenic 65.0%
GCTGCTCTCTCCCCCAGACT+AGG - chr4_2:10347729-10347748 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10345547 10349656 10345547 ID=Msa0588150;Name=Msa0588150
chr4_2 mRNA 10345547 10349656 10345547 ID=Msa0588150-mRNA-1;Parent=Msa0588150;Name=Msa0588150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=464|0.5|0.33|0.66|0.5|0.33|3|0|72
chr4_2 exon 10345547 10345616 10345547 ID=Msa0588150-mRNA-1:exon:2913;Parent=Msa0588150-mRNA-1
chr4_2 exon 10348955 10349445 10348955 ID=Msa0588150-mRNA-1:exon:2914;Parent=Msa0588150-mRNA-1
chr4_2 exon 10349535 10349656 10349535 ID=Msa0588150-mRNA-1:exon:2915;Parent=Msa0588150-mRNA-1
chr4_2 five_prime_UTR 10345547 10345616 10345547 ID=Msa0588150-mRNA-1:five_prime_utr;Parent=Msa0588150-mRNA-1
chr4_2 five_prime_UTR 10348955 10349348 10348955 ID=Msa0588150-mRNA-1:five_prime_utr;Parent=Msa0588150-mRNA-1
chr4_2 CDS 10349349 10349445 10349349 ID=Msa0588150-mRNA-1:cds;Parent=Msa0588150-mRNA-1
chr4_2 CDS 10349535 10349656 10349535 ID=Msa0588150-mRNA-1:cds;Parent=Msa0588150-mRNA-1
Gene Sequence

>Msa0588150

ATGCTTTTGTTTCTTAAGCCTAGACAGTCACAATTTTCAAGGTCCATGGTGTATAGAGTAGATGAGTTAGGAAGCATAAAATGGTTTAAGGAATCAATTTCCTCATCACCACCTCAGCAATGCATATACTTTGAGCTAGATAAGATCAAGAAAAAGAAAAAGAAAAAAGTTAATTTGGATGATCCAGCAATAAAAATTCCTTTTCATGTCAGAAAATGA
Protein sequence

>Msa0588150

MLLFLKPRQSQFSRSMVYRVDELGSIKWFKESISSSPPQQCIYFELDKIKKKKKKKVNLDDPAIKIPFHVRK*