AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137990 MtrunA17_Chr1g0210481 91.398 93 4 1 10 98 49 141 3.39e-57 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137990 AT5G04750.1 51.087 92 37 6 6 93 3 90 2.82e-14 63.2

Find 52 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGTTGAGGAGGGAGTT+TGG 0.243867 1_3:-70716687 Msa0137990:three_prime_UTR
TCGAAGCTACTCTCAATTCT+AGG 0.308350 1_3:-70716655 Msa0137990:three_prime_UTR
ATAATTTGGTACCTTGTTAT+CGG 0.335217 1_3:+70718617 None:intergenic
TCATGTAGAACTGTTCGATT+TGG 0.346117 1_3:-70716522 Msa0137990:three_prime_UTR
ACATGATGGATGCAACTAAA+TGG 0.355735 1_3:+70716880 None:intergenic
ATCTGTAGGTTTCTCCGCCT+TGG 0.365908 1_3:+70718644 None:intergenic
CTAGCCGTCAAGGTCACTTA+AGG 0.384006 1_3:-70717018 Msa0137990:three_prime_UTR
ATGCATGTGATGTGAGCATT+AGG 0.389168 1_3:+70716627 None:intergenic
TCACATGCATATAAAATTGT+TGG 0.391346 1_3:-70716614 Msa0137990:three_prime_UTR
TTAGTTGCATCCATCATGTT+TGG 0.401272 1_3:-70716876 Msa0137990:three_prime_UTR
CAAAGAAAACGTCTACATTC+AGG 0.413338 1_3:-70718794 Msa0137990:intron
GAAATGGGAGAGGGAAAGGT+TGG 0.423182 1_3:-70718694 Msa0137990:CDS
ACAGAAGCTAGCGGCTGATA+AGG 0.427012 1_3:-70718667 Msa0137990:CDS
TTTATTTGTAGTTTCGTCAA+TGG 0.432771 1_3:-70716915 Msa0137990:three_prime_UTR
TGCATGTGATGTGAGCATTA+GGG 0.448966 1_3:+70716628 None:intergenic
CACCTAGGCTGACCTTAGAT+TGG 0.453589 1_3:+70716547 None:intergenic
AGGGATCGTGACTCGTTCAA+TGG 0.456515 1_3:-70718890 Msa0137990:CDS
GGAGTCTTAGCTCCAATCTA+AGG 0.465363 1_3:-70716559 Msa0137990:three_prime_UTR
CTTCCCTTAAGTGACCTTGA+CGG 0.483822 1_3:+70717014 None:intergenic
TAGCCGTCAAGGTCACTTAA+GGG 0.484955 1_3:-70717017 Msa0137990:three_prime_UTR
TTGTTATCGGCATTATCTGT+AGG 0.488471 1_3:+70718630 None:intergenic
AGATTAAGATAGTAATGAAA+GGG 0.490479 1_3:-70716580 Msa0137990:three_prime_UTR
TATTGAGATTCAGTTGAGGA+GGG 0.492764 1_3:-70716694 Msa0137990:three_prime_UTR
ATCGGTCTTGCTAGCCGTCA+AGG 0.499625 1_3:-70717028 Msa0137990:three_prime_UTR
TAGATTAAGATAGTAATGAA+AGG 0.501246 1_3:-70716581 Msa0137990:three_prime_UTR
ATTTGAATGTAGAAACCTGA+TGG 0.520627 1_3:-70717071 Msa0137990:intron
ATATTGAGATTCAGTTGAGG+AGG 0.524048 1_3:-70716695 Msa0137990:three_prime_UTR
TCTCGCTTCTTCAGCGGCAA+AGG 0.525127 1_3:-70718844 Msa0137990:CDS
CCAGCCCAGTAAAATATCAC+AGG 0.534808 1_3:+70716827 None:intergenic
TTTGTGTGTAGAAATGGGAG+AGG 0.537501 1_3:-70718704 Msa0137990:intron
TCTTGCTAAATAAAAGAGCT+AGG 0.543420 1_3:-70716473 Msa0137990:three_prime_UTR
TTGTGTGTAGAAATGGGAGA+GGG 0.546268 1_3:-70718703 Msa0137990:intron
TGTAGAAATGGGAGAGGGAA+AGG 0.549281 1_3:-70718698 Msa0137990:intron
ACATAATGTACCAAACATGA+TGG 0.562912 1_3:+70716866 None:intergenic
TACAGATAATGCCGATAACA+AGG 0.591322 1_3:-70718628 Msa0137990:intron
CCAGTAAAATATCACAGGGA+AGG 0.592299 1_3:+70716832 None:intergenic
TTTGAATGTAGAAACCTGAT+GGG 0.600438 1_3:-70717070 Msa0137990:intron
TCAATGGATTCAACATCTCG+TGG 0.600776 1_3:-70718874 Msa0137990:CDS
TGAGATCAGCACTGAGTCGA+GGG 0.604557 1_3:-70718909 Msa0137990:CDS
ATGAGATCAGCACTGAGTCG+AGG 0.608842 1_3:-70718910 Msa0137990:CDS
GCTTCTTCTCGCTTCTTCAG+CGG 0.618308 1_3:-70718850 Msa0137990:CDS
GCATGTGATGTGAGCATTAG+GGG 0.628230 1_3:+70716629 None:intergenic
CTCCAATCTAAGGTCAGCCT+AGG 0.629742 1_3:-70716549 Msa0137990:three_prime_UTR
GCTAGCGGCTGATAAGGCCA+AGG 0.640541 1_3:-70718661 Msa0137990:CDS
CAAAGGTAAGATTCTTAGCG+AGG 0.644514 1_3:-70718827 Msa0137990:CDS
CAGCCCAGTAAAATATCACA+GGG 0.644544 1_3:+70716828 None:intergenic
CAGTTCTACATGAATCACCT+AGG 0.663049 1_3:+70716532 None:intergenic
AGCGGCTGATAAGGCCAAGG+CGG 0.664107 1_3:-70718658 Msa0137990:CDS
TGGATATTGAGATTCAGTTG+AGG 0.669746 1_3:-70716698 Msa0137990:three_prime_UTR
ACTTAAGGGAAGCAATCATG+AGG 0.694142 1_3:-70717003 Msa0137990:three_prime_UTR
GTTGGAGAAACAGAAGCTAG+CGG 0.726434 1_3:-70718676 Msa0137990:CDS
ATGTAATGTGAGTTTCACTG+TGG 0.776960 1_3:-70716718 Msa0137990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATATGTCATATA+TGG - chr1_3:70718177-70718196 Msa0137990:intron 10.0%
!!! TACCAAATTATTTTGTTTTT+AGG - chr1_3:70716815-70716834 Msa0137990:three_prime_UTR 15.0%
!! AACCTAAAAACAAAATAATT+TGG + chr1_3:70716820-70716839 None:intergenic 15.0%
!!! AATTTTAAGATATGAATCAT+AGG + chr1_3:70717048-70717067 None:intergenic 15.0%
!! AAAGAAAAAAAAAAAAGGAA+GGG + chr1_3:70717682-70717701 None:intergenic 15.0%
!! GAAAGAAAGAAAAAAAAAAA+AGG + chr1_3:70717687-70717706 None:intergenic 15.0%
!!! TTTTTTTTTTTCTTTCTTTC+TGG - chr1_3:70717687-70717706 Msa0137990:intron 15.0%
!!! TTTTTTTTTTCTTTCTTTCT+GGG - chr1_3:70717688-70717707 Msa0137990:intron 15.0%
!!! AATTTTAAAAGTGAAGAATT+TGG + chr1_3:70717865-70717884 None:intergenic 15.0%
!!! GAAATCATTTTGTTCAAAAA+TGG - chr1_3:70716485-70716504 Msa0137990:three_prime_UTR 20.0%
!! TAAAAAAGGATGAAGAAAAA+GGG + chr1_3:70716664-70716683 None:intergenic 20.0%
!!! ATATTTCTTTCTGCATATTT+TGG - chr1_3:70716850-70716869 Msa0137990:three_prime_UTR 20.0%
!!! TATTTCTTTCTGCATATTTT+GGG - chr1_3:70716851-70716870 Msa0137990:three_prime_UTR 20.0%
!! ATATTAATAGATCACAAATC+TGG + chr1_3:70716888-70716907 None:intergenic 20.0%
!!! TTTTTGATTTGGTGTATTTT+TGG - chr1_3:70716941-70716960 Msa0137990:three_prime_UTR 20.0%
!!! TTTGAAATTGTATCATATGA+TGG - chr1_3:70717020-70717039 Msa0137990:three_prime_UTR 20.0%
!! TATCAAAGTTACAGAATATT+GGG + chr1_3:70717129-70717148 None:intergenic 20.0%
!! ATATCAAAGTTACAGAATAT+TGG + chr1_3:70717130-70717149 None:intergenic 20.0%
!! TAACTTTGATATGAATATGA+TGG - chr1_3:70717138-70717157 Msa0137990:intron 20.0%
!! GAAAGAAAAAAAAAAAAGGA+AGG + chr1_3:70717683-70717702 None:intergenic 20.0%
!!! TTTTTTTTTCTTTCTTTCTG+GGG - chr1_3:70717689-70717708 Msa0137990:intron 20.0%
!! GCTTAAGATAATAATCTAAA+GGG - chr1_3:70718058-70718077 Msa0137990:intron 20.0%
!! TAGATTAAGATAGTAATGAA+AGG - chr1_3:70718839-70718858 Msa0137990:CDS 20.0%
!! AGATTAAGATAGTAATGAAA+GGG - chr1_3:70718840-70718859 Msa0137990:CDS 20.0%
! AAAAAAGGATGAAGAAAAAG+GGG + chr1_3:70716663-70716682 None:intergenic 25.0%
! CTAAAAAAGGATGAAGAAAA+AGG + chr1_3:70716665-70716684 None:intergenic 25.0%
! CAAGAAATTGGATCTAAAAA+AGG + chr1_3:70716678-70716697 None:intergenic 25.0%
!! TTGATTTTTGTGTGTAGAAA+TGG - chr1_3:70716710-70716729 Msa0137990:three_prime_UTR 25.0%
!! TGATTTTTGTGTGTAGAAAT+GGG - chr1_3:70716711-70716730 Msa0137990:three_prime_UTR 25.0%
!! ATAATTTGGTACCTTGTTAT+CGG + chr1_3:70716806-70716825 None:intergenic 25.0%
! TCAAAAAATCATCTCAGAAT+TGG + chr1_3:70716928-70716947 None:intergenic 25.0%
!!! TCTGAGATGATTTTTTGATT+TGG - chr1_3:70716930-70716949 Msa0137990:three_prime_UTR 25.0%
! AGAATTTAAGAAGCTAAAAG+TGG + chr1_3:70717182-70717201 None:intergenic 25.0%
!!! CTTTTAGCTTCTTAAATTCT+TGG - chr1_3:70717182-70717201 Msa0137990:intron 25.0%
!!! GAATTTTGTTTCTTTTACCA+AGG - chr1_3:70717210-70717229 Msa0137990:intron 25.0%
!!! GAACATATTTTTGCTTAATG+TGG - chr1_3:70717236-70717255 Msa0137990:intron 25.0%
! ATTCGATTTCATTGAAACTT+GGG + chr1_3:70717473-70717492 None:intergenic 25.0%
! AATTCGATTTCATTGAAACT+TGG + chr1_3:70717474-70717493 None:intergenic 25.0%
!!! TTTAGTTGATAGCAAAATTG+TGG + chr1_3:70717802-70717821 None:intergenic 25.0%
! CGCTTAAGATAATAATCTAA+AGG - chr1_3:70718057-70718076 Msa0137990:intron 25.0%
!! ATTAGATTAGTTATCTTTGG+AGG + chr1_3:70718093-70718112 None:intergenic 25.0%
! TCCAAAGATAACTAATCTAA+TGG - chr1_3:70718092-70718111 Msa0137990:intron 25.0%
! CCAAAGATAACTAATCTAAT+GGG - chr1_3:70718093-70718112 Msa0137990:intron 25.0%
! TCCAAAGATAACTAATCTAA+GGG - chr1_3:70718092-70718111 Msa0137990:intron 25.0%
! TTAATAAAACGTGAACTTGA+TGG + chr1_3:70718166-70718185 None:intergenic 25.0%
!!! ACATTTAAGTTTTACTGCTA+TGG - chr1_3:70718269-70718288 Msa0137990:intron 25.0%
!!! CTCAAAAGAACTGATTTTAT+CGG - chr1_3:70718374-70718393 Msa0137990:intron 25.0%
! TTTATTTGTAGTTTCGTCAA+TGG - chr1_3:70718505-70718524 Msa0137990:intron 25.0%
! TCACATGCATATAAAATTGT+TGG - chr1_3:70718806-70718825 Msa0137990:CDS 25.0%
AAAAAGGATGAAGAAAAAGG+GGG + chr1_3:70716662-70716681 None:intergenic 30.0%
GCAAAAATATGTTCAAACCT+TGG + chr1_3:70717230-70717249 None:intergenic 30.0%
AATTCGATTTCACTGTCATA+TGG - chr1_3:70717310-70717329 Msa0137990:intron 30.0%
! AAGCAACACACTCTTTTTAA+AGG - chr1_3:70717361-70717380 Msa0137990:intron 30.0%
! AGCAACACACTCTTTTTAAA+GGG - chr1_3:70717362-70717381 Msa0137990:intron 30.0%
TAGTTAATGACTAAACAGTG+AGG + chr1_3:70717393-70717412 None:intergenic 30.0%
TAGTTTCACTCGATTTCTAA+AGG + chr1_3:70717499-70717518 None:intergenic 30.0%
AAATCGAGTGAAACTAGAAA+TGG - chr1_3:70717503-70717522 Msa0137990:intron 30.0%
! AATTTATGCTGTACCCTTTT+TGG - chr1_3:70717616-70717635 Msa0137990:intron 30.0%
TTGGTTACTCTTTCCAAAAA+GGG + chr1_3:70717632-70717651 None:intergenic 30.0%
ATTGGTTACTCTTTCCAAAA+AGG + chr1_3:70717633-70717652 None:intergenic 30.0%
AGTTGTGTATAGTGTAAAAG+AGG + chr1_3:70717738-70717757 None:intergenic 30.0%
! TCTTTTACACTATACACAAC+TGG - chr1_3:70717737-70717756 Msa0137990:intron 30.0%
!!! GTATGCTTTAGCACATTTTT+TGG - chr1_3:70717923-70717942 Msa0137990:intron 30.0%
! CCCATTAGATTAGTTATCTT+TGG + chr1_3:70718096-70718115 None:intergenic 30.0%
! CTTAGATTAGTTATCTTTGG+AGG + chr1_3:70718128-70718147 None:intergenic 30.0%
CTCCAAAGATAACTAATCTA+AGG - chr1_3:70718091-70718110 Msa0137990:intron 30.0%
CCAAAGATAACTAATCTAAG+GGG - chr1_3:70718128-70718147 Msa0137990:intron 30.0%
! TTTTACTGCTATGGTGAATT+TGG - chr1_3:70718278-70718297 Msa0137990:intron 30.0%
ATTTGAATGTAGAAACCTGA+TGG - chr1_3:70718349-70718368 Msa0137990:intron 30.0%
TTTGAATGTAGAAACCTGAT+GGG - chr1_3:70718350-70718369 Msa0137990:intron 30.0%
ACATAATGTACCAAACATGA+TGG + chr1_3:70718557-70718576 None:intergenic 30.0%
TCTTGCTAAATAAAAGAGCT+AGG - chr1_3:70718947-70718966 Msa0137990:CDS 30.0%
! CTGAATGTAGACGTTTTCTT+TGG + chr1_3:70716628-70716647 None:intergenic 35.0%
CAAAGAAAACGTCTACATTC+AGG - chr1_3:70716626-70716645 Msa0137990:three_prime_UTR 35.0%
! CCAATTTCTTGCTTCTGAAA+CGG - chr1_3:70716687-70716706 Msa0137990:three_prime_UTR 35.0%
TTGTTATCGGCATTATCTGT+AGG + chr1_3:70716793-70716812 None:intergenic 35.0%
TACAGATAATGCCGATAACA+AGG - chr1_3:70716792-70716811 Msa0137990:three_prime_UTR 35.0%
AGAATATTGGGAGCTACAAA+AGG + chr1_3:70717117-70717136 None:intergenic 35.0%
!! GCAACACACTCTTTTTAAAG+GGG - chr1_3:70717363-70717382 Msa0137990:intron 35.0%
!! CAACACACTCTTTTTAAAGG+GGG - chr1_3:70717364-70717383 Msa0137990:intron 35.0%
AGTGAAACTAGAAATGGAGT+TGG - chr1_3:70717509-70717528 Msa0137990:intron 35.0%
AACTAGAAATGGAGTTGGAA+TGG - chr1_3:70717514-70717533 Msa0137990:intron 35.0%
AGAGTAACCAATGTTAGACT+TGG - chr1_3:70717641-70717660 Msa0137990:intron 35.0%
GTTAGTACCAAGTCTAACAT+TGG + chr1_3:70717651-70717670 None:intergenic 35.0%
TGTGTATAGTGTAAAAGAGG+TGG + chr1_3:70717735-70717754 None:intergenic 35.0%
TTGTGGAGAGATGAATGTAA+GGG + chr1_3:70717785-70717804 None:intergenic 35.0%
ATTGTGGAGAGATGAATGTA+AGG + chr1_3:70717786-70717805 None:intergenic 35.0%
ATTTGGTTGCAGTCGTTTAA+GGG + chr1_3:70717848-70717867 None:intergenic 35.0%
AATTTGGTTGCAGTCGTTTA+AGG + chr1_3:70717849-70717868 None:intergenic 35.0%
TGTCCATTGCAAATTGTTTG+TGG - chr1_3:70717975-70717994 Msa0137990:intron 35.0%
ATGCCACAAACAATTTGCAA+TGG + chr1_3:70717981-70718000 None:intergenic 35.0%
! CCCCTTAGATTAGTTATCTT+TGG + chr1_3:70718131-70718150 None:intergenic 35.0%
!! ACATGATGGATGCAACTAAA+TGG + chr1_3:70718543-70718562 None:intergenic 35.0%
TTAGTTGCATCCATCATGTT+TGG - chr1_3:70718544-70718563 Msa0137990:intron 35.0%
! CTTCCCTGTGATATTTTACT+GGG - chr1_3:70718589-70718608 Msa0137990:intron 35.0%
ATGTAATGTGAGTTTCACTG+TGG - chr1_3:70718702-70718721 Msa0137990:intron 35.0%
TGGATATTGAGATTCAGTTG+AGG - chr1_3:70718722-70718741 Msa0137990:intron 35.0%
ATATTGAGATTCAGTTGAGG+AGG - chr1_3:70718725-70718744 Msa0137990:intron 35.0%
TATTGAGATTCAGTTGAGGA+GGG - chr1_3:70718726-70718745 Msa0137990:intron 35.0%
TCATGTAGAACTGTTCGATT+TGG - chr1_3:70718898-70718917 Msa0137990:CDS 35.0%
! TCAATGGATTCAACATCTCG+TGG - chr1_3:70716546-70716565 Msa0137990:three_prime_UTR 40.0%
CAAAGGTAAGATTCTTAGCG+AGG - chr1_3:70716593-70716612 Msa0137990:three_prime_UTR 40.0%
CCGTTTCAGAAGCAAGAAAT+TGG + chr1_3:70716690-70716709 None:intergenic 40.0%
TTTGTGTGTAGAAATGGGAG+AGG - chr1_3:70716716-70716735 Msa0137990:three_prime_UTR 40.0%
TTGTGTGTAGAAATGGGAGA+GGG - chr1_3:70716717-70716736 Msa0137990:three_prime_UTR 40.0%
! ACGTGGTGATGACATAATTC+TGG - chr1_3:70717265-70717284 Msa0137990:intron 40.0%
!! TGACATAATTCTGGAACCTG+TGG - chr1_3:70717274-70717293 Msa0137990:intron 40.0%
ATTCAATGAAACACGACCAC+AGG + chr1_3:70717293-70717312 None:intergenic 40.0%
TCGATTTCACTGTCATATGG+TGG - chr1_3:70717313-70717332 Msa0137990:intron 40.0%
!! AAAAGAGTGTGTTGCTTGCT+AGG + chr1_3:70717358-70717377 None:intergenic 40.0%
! CTACGAACACACTCTTTTGA+AGG - chr1_3:70717414-70717433 Msa0137990:intron 40.0%
!! CACTCTTTTGAAGGTGGATT+TGG - chr1_3:70717423-70717442 Msa0137990:intron 40.0%
!! TTGAAGGTGGATTTGGCTTT+CGG - chr1_3:70717430-70717449 Msa0137990:intron 40.0%
GAAATGGAGTTGGAATGGTA+AGG - chr1_3:70717519-70717538 Msa0137990:intron 40.0%
!! TTTTCTTTCTTTCTGGGGAG+TGG - chr1_3:70717694-70717713 Msa0137990:intron 40.0%
TTCCATGTTGCTGTGAATCA+AGG - chr1_3:70717952-70717971 Msa0137990:intron 40.0%
ACTTAAGGGAAGCAATCATG+AGG - chr1_3:70718417-70718436 Msa0137990:intron 40.0%
CCAGTAAAATATCACAGGGA+AGG + chr1_3:70718591-70718610 None:intergenic 40.0%
! CCTTCCCTGTGATATTTTAC+TGG - chr1_3:70718588-70718607 Msa0137990:intron 40.0%
CAGCCCAGTAAAATATCACA+GGG + chr1_3:70718595-70718614 None:intergenic 40.0%
TCGAAGCTACTCTCAATTCT+AGG - chr1_3:70718765-70718784 Msa0137990:intron 40.0%
TGCATGTGATGTGAGCATTA+GGG + chr1_3:70718795-70718814 None:intergenic 40.0%
ATGCATGTGATGTGAGCATT+AGG + chr1_3:70718796-70718815 None:intergenic 40.0%
CAGTTCTACATGAATCACCT+AGG + chr1_3:70718891-70718910 None:intergenic 40.0%
TGTAGAAATGGGAGAGGGAA+AGG - chr1_3:70716722-70716741 Msa0137990:three_prime_UTR 45.0%
GTTGGAGAAACAGAAGCTAG+CGG - chr1_3:70716744-70716763 Msa0137990:three_prime_UTR 45.0%
GCTTAATGTGGTATTGCACG+TGG - chr1_3:70717248-70717267 Msa0137990:intron 45.0%
!! CGAACACACTCTTTTGAAGG+TGG - chr1_3:70717417-70717436 Msa0137990:intron 45.0%
CACCTTGATTCACAGCAACA+TGG + chr1_3:70717957-70717976 None:intergenic 45.0%
!! CAGTTCTTTTGAGTCCCATC+AGG + chr1_3:70718367-70718386 None:intergenic 45.0%
TAGCCGTCAAGGTCACTTAA+GGG - chr1_3:70718403-70718422 Msa0137990:intron 45.0%
CTTCCCTTAAGTGACCTTGA+CGG + chr1_3:70718409-70718428 None:intergenic 45.0%
CCAGCCCAGTAAAATATCAC+AGG + chr1_3:70718596-70718615 None:intergenic 45.0%
! CCTGTGATATTTTACTGGGC+TGG - chr1_3:70718593-70718612 Msa0137990:intron 45.0%
!!! ATATTTTACTGGGCTGGCAG+TGG - chr1_3:70718599-70718618 Msa0137990:intron 45.0%
ATTCAGTTGAGGAGGGAGTT+TGG - chr1_3:70718733-70718752 Msa0137990:intron 45.0%
GCATGTGATGTGAGCATTAG+GGG + chr1_3:70718794-70718813 None:intergenic 45.0%
GGAGTCTTAGCTCCAATCTA+AGG - chr1_3:70718861-70718880 Msa0137990:CDS 45.0%
! ATGAGATCAGCACTGAGTCG+AGG - chr1_3:70716510-70716529 Msa0137990:three_prime_UTR 50.0%
! TGAGATCAGCACTGAGTCGA+GGG - chr1_3:70716511-70716530 Msa0137990:three_prime_UTR 50.0%
AGGGATCGTGACTCGTTCAA+TGG - chr1_3:70716530-70716549 Msa0137990:three_prime_UTR 50.0%
GCTTCTTCTCGCTTCTTCAG+CGG - chr1_3:70716570-70716589 Msa0137990:three_prime_UTR 50.0%
GAAATGGGAGAGGGAAAGGT+TGG - chr1_3:70716726-70716745 Msa0137990:three_prime_UTR 50.0%
ACAGAAGCTAGCGGCTGATA+AGG - chr1_3:70716753-70716772 Msa0137990:three_prime_UTR 50.0%
ATCTGTAGGTTTCTCCGCCT+TGG + chr1_3:70716779-70716798 None:intergenic 50.0%
TGGAGTTGGAATGGTAAGGC+AGG - chr1_3:70717523-70717542 Msa0137990:intron 50.0%
ACAACTGCGCACCATGGTAA+GGG + chr1_3:70718036-70718055 None:intergenic 50.0%
CTAGCCGTCAAGGTCACTTA+AGG - chr1_3:70718402-70718421 Msa0137990:intron 50.0%
! CTCCAATCTAAGGTCAGCCT+AGG - chr1_3:70718871-70718890 Msa0137990:CDS 50.0%
CACCTAGGCTGACCTTAGAT+TGG + chr1_3:70718876-70718895 None:intergenic 50.0%
TCTCGCTTCTTCAGCGGCAA+AGG - chr1_3:70716576-70716595 Msa0137990:three_prime_UTR 55.0%
AATCATCCCCCTGCTGTGCT+TGG + chr1_3:70718011-70718030 None:intergenic 55.0%
GGGATGATTGCCCCTTACCA+TGG - chr1_3:70718022-70718041 Msa0137990:intron 55.0%
CAACTGCGCACCATGGTAAG+GGG + chr1_3:70718035-70718054 None:intergenic 55.0%
CACAACTGCGCACCATGGTA+AGG + chr1_3:70718037-70718056 None:intergenic 55.0%
ATCGGTCTTGCTAGCCGTCA+AGG - chr1_3:70718392-70718411 Msa0137990:intron 55.0%
GCTAGCGGCTGATAAGGCCA+AGG - chr1_3:70716759-70716778 Msa0137990:three_prime_UTR 60.0%
AGCGGCTGATAAGGCCAAGG+CGG - chr1_3:70716762-70716781 Msa0137990:three_prime_UTR 60.0%
ATGCGCCTTCCAAGCACAGC+AGG - chr1_3:70717999-70718018 Msa0137990:intron 60.0%
TGCGCCTTCCAAGCACAGCA+GGG - chr1_3:70718000-70718019 Msa0137990:intron 60.0%
ATCCCCCTGCTGTGCTTGGA+AGG + chr1_3:70718007-70718026 None:intergenic 60.0%
AAGCGCACAACTGCGCACCA+TGG + chr1_3:70718042-70718061 None:intergenic 60.0%
GCGCCTTCCAAGCACAGCAG+GGG - chr1_3:70718001-70718020 Msa0137990:intron 65.0%
CGCCTTCCAAGCACAGCAGG+GGG - chr1_3:70718002-70718021 Msa0137990:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70716464 70718978 70716464 ID=Msa0137990;Name=Msa0137990
chr1_3 mRNA 70716464 70718978 70716464 ID=Msa0137990-mRNA-1;Parent=Msa0137990;Name=Msa0137990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=1|1|1|1|0.5|0.66|3|591|98
chr1_3 exon 70716464 70717081 70716464 ID=Msa0137990-mRNA-1:exon:24553;Parent=Msa0137990-mRNA-1
chr1_3 exon 70718629 70718715 70718629 ID=Msa0137990-mRNA-1:exon:24552;Parent=Msa0137990-mRNA-1
chr1_3 exon 70718795 70718978 70718795 ID=Msa0137990-mRNA-1:exon:24551;Parent=Msa0137990-mRNA-1
chr1_3 five_prime_UTR 70718978 70718978 70718978 ID=Msa0137990-mRNA-1:five_prime_utr;Parent=Msa0137990-mRNA-1
chr1_3 CDS 70718795 70718977 70718795 ID=Msa0137990-mRNA-1:cds;Parent=Msa0137990-mRNA-1
chr1_3 CDS 70718629 70718715 70718629 ID=Msa0137990-mRNA-1:cds;Parent=Msa0137990-mRNA-1
chr1_3 CDS 70717055 70717081 70717055 ID=Msa0137990-mRNA-1:cds;Parent=Msa0137990-mRNA-1
chr1_3 three_prime_UTR 70716464 70717054 70716464 ID=Msa0137990-mRNA-1:three_prime_utr;Parent=Msa0137990-mRNA-1
Gene Sequence

>Msa0137990

ATGGCAATCACATTTTCTGTGAAATCATTTTGTTCAAAAATGGCAATGAGATCAGCACTGAGTCGAGGGATCGTGACTCGTTCAATGGATTCAACATCTCGTGGAGCTTCTTCTCGCTTCTTCAGCGGCAAAGGTAAGATTCTTAGCGAGGAAGAACAAGCCAAAGAAAACGTCTACATTCAGAAATGGGAGAGGGAAAGGTTGGAGAAACAGAAGCTAGCGGCTGATAAGGCCAAGGCGGAGAAACCTACAGATAATGCCGATAACAAGAAACCTGATGGGACTCAAAAGAACTGA

Protein sequence

>Msa0137990

MAITFSVKSFCSKMAMRSALSRGIVTRSMDSTSRGASSRFFSGKGKILSEEEQAKENVYIQKWERERLEKQKLAADKAKAEKPTDNADNKKPDGTQKN*