AlfalfaGEDB | Msa0137990

M. sativa cultivar zhongmu-4 / Msa0137990

KEGG: K22255
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137990	RHN82494.1	91.398	93	4	1	10	98	49	141	3.69e-53	172

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137990	A0A396JZ55	91.398	93	4	1	10	98	49	141	1.76e-53	172

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0137990	0.873636	1.261099e-67	-8.615850e-47
Msa0003720	Msa0137990	0.842691	2.215742e-58	-8.615850e-47
Msa0003780	Msa0137990	0.819610	1.060913e-52	-8.615850e-47
Msa0003890	Msa0137990	0.830334	3.113712e-55	-8.615850e-47
Msa0004540	Msa0137990	0.817663	2.933957e-52	-8.615850e-47
Msa0006380	Msa0137990	0.827198	1.785622e-54	-8.615850e-47
Msa0006550	Msa0137990	0.801727	7.854698e-49	-8.615850e-47
Msa0007440	Msa0137990	0.809275	2.050655e-50	-8.615850e-47
Msa0007850	Msa0137990	0.803397	3.554399e-49	-8.615850e-47
Msa0008090	Msa0137990	0.850949	1.219290e-60	-8.615850e-47

Showing 1 to 10 of 1,217 entries

Previous1 2 3 4 5…122Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137990	MtrunA17_Chr1g0210481	91.398	93	4	1	10	98	49	141	3.39e-57	172

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0137990	AT5G04750.1	51.087	92	37	6	6	93	3	90	2.82e-14	63.2

Showing 1 to 1 of 1 entries

Previous1Next

Find 52 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGAAGCTAGCGGCTGATA+AGG	0.427012	1_3:-70718667	Msa0137990:CDS
ACATAATGTACCAAACATGA+TGG	0.562912	1_3:+70716866	None:intergenic
ACATGATGGATGCAACTAAA+TGG	0.355735	1_3:+70716880	None:intergenic
ACTTAAGGGAAGCAATCATG+AGG	0.694142	1_3:-70717003	Msa0137990:three_prime_UTR
AGATTAAGATAGTAATGAAA+GGG	0.490479	1_3:-70716580	Msa0137990:three_prime_UTR
AGCGGCTGATAAGGCCAAGG+CGG	0.664107	1_3:-70718658	Msa0137990:CDS
AGGGATCGTGACTCGTTCAA+TGG	0.456515	1_3:-70718890	Msa0137990:CDS
ATAATTTGGTACCTTGTTAT+CGG	0.335217	1_3:+70718617	None:intergenic
ATATTGAGATTCAGTTGAGG+AGG	0.524048	1_3:-70716695	Msa0137990:three_prime_UTR
ATCGGTCTTGCTAGCCGTCA+AGG	0.499625	1_3:-70717028	Msa0137990:three_prime_UTR

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGATGAAGAAAAAGG+GGG	+	chr1_3:70716662-70716681	None:intergenic	30.0%
GCAAAAATATGTTCAAACCT+TGG	+	chr1_3:70717230-70717249	None:intergenic	30.0%
AATTCGATTTCACTGTCATA+TGG	-	chr1_3:70717310-70717329	Msa0137990:intron	30.0%
TAGTTAATGACTAAACAGTG+AGG	+	chr1_3:70717393-70717412	None:intergenic	30.0%
TAGTTTCACTCGATTTCTAA+AGG	+	chr1_3:70717499-70717518	None:intergenic	30.0%
AAATCGAGTGAAACTAGAAA+TGG	-	chr1_3:70717503-70717522	Msa0137990:intron	30.0%
TTGGTTACTCTTTCCAAAAA+GGG	+	chr1_3:70717632-70717651	None:intergenic	30.0%
ATTGGTTACTCTTTCCAAAA+AGG	+	chr1_3:70717633-70717652	None:intergenic	30.0%
AGTTGTGTATAGTGTAAAAG+AGG	+	chr1_3:70717738-70717757	None:intergenic	30.0%
CTCCAAAGATAACTAATCTA+AGG	-	chr1_3:70718091-70718110	Msa0137990:intron	30.0%

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	70716464	70718978	70716464	ID=Msa0137990;Name=Msa0137990
chr1_3	mRNA	70716464	70718978	70716464	ID=Msa0137990-mRNA-1;Parent=Msa0137990;Name=Msa0137990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=1\|1\|1\|1\|0.5\|0.66\|3\|591\|98
chr1_3	exon	70716464	70717081	70716464	ID=Msa0137990-mRNA-1:exon:24553;Parent=Msa0137990-mRNA-1
chr1_3	exon	70718629	70718715	70718629	ID=Msa0137990-mRNA-1:exon:24552;Parent=Msa0137990-mRNA-1
chr1_3	exon	70718795	70718978	70718795	ID=Msa0137990-mRNA-1:exon:24551;Parent=Msa0137990-mRNA-1
chr1_3	five_prime_UTR	70718978	70718978	70718978	ID=Msa0137990-mRNA-1:five_prime_utr;Parent=Msa0137990-mRNA-1
chr1_3	CDS	70718795	70718977	70718795	ID=Msa0137990-mRNA-1:cds;Parent=Msa0137990-mRNA-1
chr1_3	CDS	70718629	70718715	70718629	ID=Msa0137990-mRNA-1:cds;Parent=Msa0137990-mRNA-1
chr1_3	CDS	70717055	70717081	70717055	ID=Msa0137990-mRNA-1:cds;Parent=Msa0137990-mRNA-1
chr1_3	three_prime_UTR	70716464	70717054	70716464	ID=Msa0137990-mRNA-1:three_prime_utr;Parent=Msa0137990-mRNA-1

Gene Sequence	>Msa0137990 ATGGCAATCACATTTTCTGTGAAATCATTTTGTTCAAAAATGGCAATGAGATCAGCACTGAGTCGAGGGATCGTGACTCGTTCAATGGATTCAACATCTCGTGGAGCTTCTTCTCGCTTCTTCAGCGGCAAAGGTAAGATTCTTAGCGAGGAAGAACAAGCCAAAGAAAACGTCTACATTCAGAAATGGGAGAGGGAAAGGTTGGAGAAACAGAAGCTAGCGGCTGATAAGGCCAAGGCGGAGAAACCTACAGATAATGCCGATAACAAGAAACCTGATGGGACTCAAAAGAACTGA
Protein sequence	>Msa0137990 MAITFSVKSFCSKMAMRSALSRGIVTRSMDSTSRGASSRFFSGKGKILSEEEQAKENVYIQKWERERLEKQKLAADKAKAEKPTDNADNKKPDGTQKN*