AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1006840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006840 MtrunA17_Chr7g0217171 100.000 120 0 0 1 120 1 120 3.72e-83 238
Msa1006840 MtrunA17_Chr8g0361721 99.160 119 1 0 1 119 1 119 2.16e-81 234
Msa1006840 MtrunA17_Chr5g0417101 96.667 120 4 0 1 120 1 120 2.26e-80 231
Msa1006840 MtrunA17_Chr7g0217651 75.510 49 12 0 1 49 1 49 2.07e-21 80.5
Msa1006840 MtrunA17_Chr8g0343321 74.545 55 13 1 66 119 66 120 9.06e-20 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006840 AT1G26880.1 90.833 120 11 0 1 120 1 120 2.67e-75 219
Msa1006840 AT1G69620.1 91.597 119 10 0 1 119 1 119 1.03e-74 217
Msa1006840 AT3G28900.1 88.333 120 14 0 1 120 1 120 5.19e-73 213
Msa1006840 AT1G26880.2 91.304 92 8 0 1 92 1 92 7.25e-58 174

Find 36 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACCGCCGCACTGTTAAC+AGG 0.305052 7_1:-5766880 Msa1006840:CDS
TGGATCCTCTTTCCAGTAAC+AGG 0.314412 7_1:+5768140 None:intergenic
GGACCTAAGTGTCCTGTTAC+TGG 0.331250 7_1:-5768152 Msa1006840:CDS
CGCACTGTTAACAGGGCTTA+TGG 0.356563 7_1:-5766872 Msa1006840:CDS
ATGGAAATCCTCTACTGAAA+TGG 0.387347 7_1:-5766434 Msa1006840:three_prime_UTR
AACACGATGCTGGTTGGATT+TGG 0.389836 7_1:+5768375 None:intergenic
CCTTTCCCTAACTGCTCCTC+CGG 0.445304 7_1:+5766838 None:intergenic
TTTCCATTTAAAATGTGCAT+TGG 0.456343 7_1:+5766450 None:intergenic
TTAACAGTGCGGCGGTTCCT+AGG 0.468395 7_1:+5766884 None:intergenic
TGAGCACAAATCTAAACAAA+AGG 0.501606 7_1:+5766598 None:intergenic
AATGGTGTTAATTATGAATG+TGG 0.505002 7_1:-5766560 Msa1006840:three_prime_UTR
TTTCCAGTAACAGGACACTT+AGG 0.509665 7_1:+5768149 None:intergenic
TTTATCCGGAGGAGCAGTTA+GGG 0.512833 7_1:-5766843 Msa1006840:CDS
ACGATGCTGGTTGGATTTGG+TGG 0.532546 7_1:+5768378 None:intergenic
CATCGTGTTGTTAAGACACC+TGG 0.536949 7_1:-5768361 Msa1006840:intron
AATAGAAACCATTTCAGTAG+AGG 0.537441 7_1:+5766426 None:intergenic
AGTGTCCTGTTACTGGAAAG+AGG 0.543803 7_1:-5768145 Msa1006840:CDS
CTTAACAACACGATGCTGGT+TGG 0.545517 7_1:+5768369 None:intergenic
GTTACTGGAAAGAGGATCCA+AGG 0.571456 7_1:-5768137 Msa1006840:CDS
ACAACTAAGAAGAGAGCTAG+TGG 0.577057 7_1:-5768173 Msa1006840:CDS
GTGTCTTAACAACACGATGC+TGG 0.578379 7_1:+5768365 None:intergenic
TGGCATAGCTGTGTCTCCTA+CGG 0.580308 7_1:+5768398 None:intergenic
GCTCTTCAACAAGGAAAGCA+CGG 0.587996 7_1:+5766722 None:intergenic
CCGGAGGAGCAGTTAGGGAA+AGG 0.595594 7_1:-5766838 Msa1006840:intron
CTAGACCTCTTGTATTCAGT+AGG 0.617053 7_1:+5766911 None:intergenic
TTACTGGAAAGAGGATCCAA+GGG 0.629653 7_1:-5768136 Msa1006840:CDS
TGAGACCTACTGAATACAAG+AGG 0.631121 7_1:-5766916 Msa1006840:CDS
ACAAGAGGTCTAGATTGCCT+AGG 0.636078 7_1:-5766901 Msa1006840:CDS
TATTCAGTAGGTCTCAAGTG+TGG 0.667813 7_1:+5766923 None:intergenic
CATCTCAACAACAATCACCA+TGG 0.687456 7_1:-5768437 Msa1006840:exon
AAGCCCTGTTAACAGTGCGG+CGG 0.691394 7_1:+5766876 None:intergenic
ACTGTTAACAGGGCTTATGG+AGG 0.693206 7_1:-5766869 Msa1006840:CDS
TTCAGAGACTCACATACCGT+AGG 0.721913 7_1:-5768414 Msa1006840:CDS
CATAAGCCCTGTTAACAGTG+CGG 0.730145 7_1:+5766873 None:intergenic
TACTGGAAAGAGGATCCAAG+GGG 0.738216 7_1:-5768135 Msa1006840:intron
GTATGTGAGTCTCTGAACCA+TGG 0.739024 7_1:+5768420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTTCTTAAAAAT+TGG - chr7_1:5766540-5766559 Msa1006840:three_prime_UTR 10.0%
!!! TTTTTTAGAAATTAATATGT+TGG - chr7_1:5766727-5766746 Msa1006840:CDS 10.0%
!! ATTATAAAATCAATTATTTG+TGG - chr7_1:5766969-5766988 Msa1006840:intron 10.0%
!! ATTTGAAAATTGAAAATATT+AGG + chr7_1:5767077-5767096 None:intergenic 10.0%
!!! TTAATTTCAAATTGATTTTA+TGG - chr7_1:5768284-5768303 Msa1006840:intron 10.0%
!!! TTTGATTTTTTCTTAAAAAT+TGG - chr7_1:5766540-5766559 Msa1006840:three_prime_UTR 10.0%
!!! TTTTTTAGAAATTAATATGT+TGG - chr7_1:5766727-5766746 Msa1006840:CDS 10.0%
!! ATTATAAAATCAATTATTTG+TGG - chr7_1:5766969-5766988 Msa1006840:intron 10.0%
!! ATTTGAAAATTGAAAATATT+AGG + chr7_1:5767077-5767096 None:intergenic 10.0%
!!! TTAATTTCAAATTGATTTTA+TGG - chr7_1:5768284-5768303 Msa1006840:intron 10.0%
!!! TTTTGATTAATTTGTGAAAA+TGG - chr7_1:5766585-5766604 Msa1006840:three_prime_UTR 15.0%
!!! TTTGATTAATTTGTGAAAAT+GGG - chr7_1:5766586-5766605 Msa1006840:three_prime_UTR 15.0%
!! TTTGCAATTATTAATGTTAA+TGG - chr7_1:5766934-5766953 Msa1006840:intron 15.0%
!! TAATAAATCTTCAATAACAA+TGG + chr7_1:5767405-5767424 None:intergenic 15.0%
!!! TTTTGATTAATTTGTGAAAA+TGG - chr7_1:5766585-5766604 Msa1006840:three_prime_UTR 15.0%
!!! TTTGATTAATTTGTGAAAAT+GGG - chr7_1:5766586-5766605 Msa1006840:three_prime_UTR 15.0%
!! TTTGCAATTATTAATGTTAA+TGG - chr7_1:5766934-5766953 Msa1006840:intron 15.0%
!! TAATAAATCTTCAATAACAA+TGG + chr7_1:5767405-5767424 None:intergenic 15.0%
!!! TTAATATGTTGGTTATACAT+AGG - chr7_1:5766738-5766757 Msa1006840:intron 20.0%
!!! AAATCAATTACTGTGTTTTT+TGG - chr7_1:5767179-5767198 Msa1006840:intron 20.0%
!! GAATGAAAATTAAAAGTAGT+AGG + chr7_1:5767754-5767773 None:intergenic 20.0%
!!! TTAATATGTTGGTTATACAT+AGG - chr7_1:5766738-5766757 Msa1006840:intron 20.0%
!!! AAATCAATTACTGTGTTTTT+TGG - chr7_1:5767179-5767198 Msa1006840:intron 20.0%
!! GAATGAAAATTAAAAGTAGT+AGG + chr7_1:5767754-5767773 None:intergenic 20.0%
!!! AATGGGTTTGTGTTTTTTTT+AGG - chr7_1:5766603-5766622 Msa1006840:three_prime_UTR 25.0%
! GATATATGTGAGTTTATGAT+AGG - chr7_1:5766832-5766851 Msa1006840:intron 25.0%
! GACTTGTATTATTCATCAAT+TGG - chr7_1:5766854-5766873 Msa1006840:CDS 25.0%
! TTGTCTGTGTTATGTAAAAT+AGG - chr7_1:5766887-5766906 Msa1006840:CDS 25.0%
! TGTAAAATAGGTGGAATATT+AGG - chr7_1:5766899-5766918 Msa1006840:CDS 25.0%
!!! TTAGCTTTAACTTCAATGTT+GGG - chr7_1:5767027-5767046 Msa1006840:intron 25.0%
! AAACTATCTCTTCTGTAATA+GGG + chr7_1:5767265-5767284 None:intergenic 25.0%
! TGGACTTAACTAAAAAAAGA+CGG + chr7_1:5767385-5767404 None:intergenic 25.0%
! AGTCACCAATAATTTAGAAA+GGG + chr7_1:5767570-5767589 None:intergenic 25.0%
! GCATCATTGAGATTATAAAA+TGG + chr7_1:5767655-5767674 None:intergenic 25.0%
! GAAAATTAAAAGTAGTAGGT+AGG + chr7_1:5767750-5767769 None:intergenic 25.0%
!!! AGTTAAGCTGATTTTATCAA+TGG - chr7_1:5768178-5768197 Msa1006840:CDS 25.0%
!! AATGGTGTTAATTATGAATG+TGG - chr7_1:5768258-5768277 Msa1006840:intron 25.0%
!! TTTCCATTTAAAATGTGCAT+TGG + chr7_1:5768371-5768390 None:intergenic 25.0%
!!! AATGGGTTTGTGTTTTTTTT+AGG - chr7_1:5766603-5766622 Msa1006840:three_prime_UTR 25.0%
! GATATATGTGAGTTTATGAT+AGG - chr7_1:5766832-5766851 Msa1006840:intron 25.0%
! GACTTGTATTATTCATCAAT+TGG - chr7_1:5766854-5766873 Msa1006840:CDS 25.0%
! TTGTCTGTGTTATGTAAAAT+AGG - chr7_1:5766887-5766906 Msa1006840:CDS 25.0%
! TGTAAAATAGGTGGAATATT+AGG - chr7_1:5766899-5766918 Msa1006840:CDS 25.0%
!!! TTAGCTTTAACTTCAATGTT+GGG - chr7_1:5767027-5767046 Msa1006840:intron 25.0%
! AAACTATCTCTTCTGTAATA+GGG + chr7_1:5767265-5767284 None:intergenic 25.0%
! TGGACTTAACTAAAAAAAGA+CGG + chr7_1:5767385-5767404 None:intergenic 25.0%
! AGTCACCAATAATTTAGAAA+GGG + chr7_1:5767570-5767589 None:intergenic 25.0%
! GCATCATTGAGATTATAAAA+TGG + chr7_1:5767655-5767674 None:intergenic 25.0%
! GAAAATTAAAAGTAGTAGGT+AGG + chr7_1:5767750-5767769 None:intergenic 25.0%
!!! AGTTAAGCTGATTTTATCAA+TGG - chr7_1:5768178-5768197 Msa1006840:CDS 25.0%
!! AATGGTGTTAATTATGAATG+TGG - chr7_1:5768258-5768277 Msa1006840:intron 25.0%
!! TTTCCATTTAAAATGTGCAT+TGG + chr7_1:5768371-5768390 None:intergenic 25.0%
AACCCTAGAAAAATGAAAGA+GGG + chr7_1:5766357-5766376 None:intergenic 30.0%
AAACCCTAGAAAAATGAAAG+AGG + chr7_1:5766358-5766377 None:intergenic 30.0%
!!! GTTTTTTTTAGGTGGAAAGT+TGG - chr7_1:5766614-5766633 Msa1006840:three_prime_UTR 30.0%
TCTGTGTTATGTAAAATAGG+TGG - chr7_1:5766890-5766909 Msa1006840:CDS 30.0%
!! CTTAGCTTTAACTTCAATGT+TGG - chr7_1:5767026-5767045 Msa1006840:intron 30.0%
TTGAATTCGTCTATGTTAGT+TGG + chr7_1:5767107-5767126 None:intergenic 30.0%
CAACACAATATTCAATCAGA+TGG + chr7_1:5767235-5767254 None:intergenic 30.0%
CAAACTATCTCTTCTGTAAT+AGG + chr7_1:5767266-5767285 None:intergenic 30.0%
! ATTAGCCTATGTTTGAAACA+TGG - chr7_1:5767421-5767440 Msa1006840:intron 30.0%
ATCTACCATGTTTCAAACAT+AGG + chr7_1:5767429-5767448 None:intergenic 30.0%
! AAAATTGATGATAGCGTCAA+AGG + chr7_1:5767475-5767494 None:intergenic 30.0%
CCAATAATTTAGAAAGGGTA+GGG + chr7_1:5767565-5767584 None:intergenic 30.0%
ACCAATAATTTAGAAAGGGT+AGG + chr7_1:5767566-5767585 None:intergenic 30.0%
CAGTCACCAATAATTTAGAA+AGG + chr7_1:5767571-5767590 None:intergenic 30.0%
TTATCATGTTTGTTCTGTTC+TGG - chr7_1:5767856-5767875 Msa1006840:intron 30.0%
!!! CTATTTTTTGCTCTTCAACA+AGG + chr7_1:5768108-5768127 None:intergenic 30.0%
!!! CTTGCTTTTCTTTTGTTTTC+TGG + chr7_1:5768150-5768169 None:intergenic 30.0%
TGAGCACAAATCTAAACAAA+AGG + chr7_1:5768223-5768242 None:intergenic 30.0%
!!! TCAAGAGTTTTGACTTTGAA+TGG - chr7_1:5768240-5768259 Msa1006840:intron 30.0%
! GTTCCAATGCACATTTTAAA+TGG - chr7_1:5768365-5768384 Msa1006840:CDS 30.0%
AATAGAAACCATTTCAGTAG+AGG + chr7_1:5768395-5768414 None:intergenic 30.0%
AACCCTAGAAAAATGAAAGA+GGG + chr7_1:5766357-5766376 None:intergenic 30.0%
AAACCCTAGAAAAATGAAAG+AGG + chr7_1:5766358-5766377 None:intergenic 30.0%
!!! GTTTTTTTTAGGTGGAAAGT+TGG - chr7_1:5766614-5766633 Msa1006840:three_prime_UTR 30.0%
TCTGTGTTATGTAAAATAGG+TGG - chr7_1:5766890-5766909 Msa1006840:CDS 30.0%
!! CTTAGCTTTAACTTCAATGT+TGG - chr7_1:5767026-5767045 Msa1006840:intron 30.0%
TTGAATTCGTCTATGTTAGT+TGG + chr7_1:5767107-5767126 None:intergenic 30.0%
CAACACAATATTCAATCAGA+TGG + chr7_1:5767235-5767254 None:intergenic 30.0%
CAAACTATCTCTTCTGTAAT+AGG + chr7_1:5767266-5767285 None:intergenic 30.0%
! ATTAGCCTATGTTTGAAACA+TGG - chr7_1:5767421-5767440 Msa1006840:intron 30.0%
ATCTACCATGTTTCAAACAT+AGG + chr7_1:5767429-5767448 None:intergenic 30.0%
! AAAATTGATGATAGCGTCAA+AGG + chr7_1:5767475-5767494 None:intergenic 30.0%
CCAATAATTTAGAAAGGGTA+GGG + chr7_1:5767565-5767584 None:intergenic 30.0%
ACCAATAATTTAGAAAGGGT+AGG + chr7_1:5767566-5767585 None:intergenic 30.0%
CAGTCACCAATAATTTAGAA+AGG + chr7_1:5767571-5767590 None:intergenic 30.0%
TTATCATGTTTGTTCTGTTC+TGG - chr7_1:5767856-5767875 Msa1006840:intron 30.0%
!!! CTATTTTTTGCTCTTCAACA+AGG + chr7_1:5768108-5768127 None:intergenic 30.0%
!!! CTTGCTTTTCTTTTGTTTTC+TGG + chr7_1:5768150-5768169 None:intergenic 30.0%
TGAGCACAAATCTAAACAAA+AGG + chr7_1:5768223-5768242 None:intergenic 30.0%
!!! TCAAGAGTTTTGACTTTGAA+TGG - chr7_1:5768240-5768259 Msa1006840:intron 30.0%
! GTTCCAATGCACATTTTAAA+TGG - chr7_1:5768365-5768384 Msa1006840:CDS 30.0%
AATAGAAACCATTTCAGTAG+AGG + chr7_1:5768395-5768414 None:intergenic 30.0%
ACCCTAGAAAAATGAAAGAG+GGG + chr7_1:5766356-5766375 None:intergenic 35.0%
TGACAAAGAAGAACATTACC+AGG + chr7_1:5766478-5766497 None:intergenic 35.0%
!!! GGGTTTGTGTTTTTTTTAGG+TGG - chr7_1:5766606-5766625 Msa1006840:three_prime_UTR 35.0%
TCATATAGATACATACCCCT+TGG + chr7_1:5766701-5766720 None:intergenic 35.0%
TATGTTTGTACATGATGCTG+TGG - chr7_1:5766796-5766815 Msa1006840:intron 35.0%
GTTTATTGAGCGAATGTTCT+TGG - chr7_1:5766991-5767010 Msa1006840:intron 35.0%
CCCTACCCTTTCTAAATTAT+TGG - chr7_1:5767562-5767581 Msa1006840:intron 35.0%
GATGCAATTCTACAACATTG+TGG - chr7_1:5767670-5767689 Msa1006840:intron 35.0%
CAATTCTACAACATTGTGGA+AGG - chr7_1:5767674-5767693 Msa1006840:intron 35.0%
!! GAAAGTGTCAAGATTATGCA+GGG + chr7_1:5767728-5767747 None:intergenic 35.0%
ATGGAAATCCTCTACTGAAA+TGG - chr7_1:5768384-5768403 Msa1006840:CDS 35.0%
ACCCTAGAAAAATGAAAGAG+GGG + chr7_1:5766356-5766375 None:intergenic 35.0%
TGACAAAGAAGAACATTACC+AGG + chr7_1:5766478-5766497 None:intergenic 35.0%
!!! GGGTTTGTGTTTTTTTTAGG+TGG - chr7_1:5766606-5766625 Msa1006840:three_prime_UTR 35.0%
TCATATAGATACATACCCCT+TGG + chr7_1:5766701-5766720 None:intergenic 35.0%
TATGTTTGTACATGATGCTG+TGG - chr7_1:5766796-5766815 Msa1006840:intron 35.0%
GTTTATTGAGCGAATGTTCT+TGG - chr7_1:5766991-5767010 Msa1006840:intron 35.0%
CCCTACCCTTTCTAAATTAT+TGG - chr7_1:5767562-5767581 Msa1006840:intron 35.0%
GATGCAATTCTACAACATTG+TGG - chr7_1:5767670-5767689 Msa1006840:intron 35.0%
CAATTCTACAACATTGTGGA+AGG - chr7_1:5767674-5767693 Msa1006840:intron 35.0%
!! GAAAGTGTCAAGATTATGCA+GGG + chr7_1:5767728-5767747 None:intergenic 35.0%
ATGGAAATCCTCTACTGAAA+TGG - chr7_1:5768384-5768403 Msa1006840:CDS 35.0%
!! GCCCCTCTTTCATTTTTCTA+GGG - chr7_1:5766352-5766371 Msa1006840:three_prime_UTR 40.0%
CATCTCAACAACAATCACCA+TGG - chr7_1:5766381-5766400 Msa1006840:three_prime_UTR 40.0%
ACAACTAAGAAGAGAGCTAG+TGG - chr7_1:5766645-5766664 Msa1006840:exon 40.0%
TTTCCAGTAACAGGACACTT+AGG + chr7_1:5766672-5766691 None:intergenic 40.0%
TTACTGGAAAGAGGATCCAA+GGG - chr7_1:5766682-5766701 Msa1006840:CDS 40.0%
ATAGCGTCAAAGGTCATAGT+TGG + chr7_1:5767465-5767484 None:intergenic 40.0%
TAGAAAGGGTAGGGACAATA+AGG + chr7_1:5767556-5767575 None:intergenic 40.0%
AAGCTTAGATGCTGTGTGAT+AGG + chr7_1:5767629-5767648 None:intergenic 40.0%
!! GGAAAGTGTCAAGATTATGC+AGG + chr7_1:5767729-5767748 None:intergenic 40.0%
TATTCAGTAGGTCTCAAGTG+TGG + chr7_1:5767898-5767917 None:intergenic 40.0%
TGAGACCTACTGAATACAAG+AGG - chr7_1:5767902-5767921 Msa1006840:intron 40.0%
CTAGACCTCTTGTATTCAGT+AGG + chr7_1:5767910-5767929 None:intergenic 40.0%
!!! GCTTATGGAGGTGTTTTATC+CGG - chr7_1:5767961-5767980 Msa1006840:intron 40.0%
ACGCTATTCAATCTTTGTGC+AGG - chr7_1:5768068-5768087 Msa1006840:intron 40.0%
!! GCCCCTCTTTCATTTTTCTA+GGG - chr7_1:5766352-5766371 Msa1006840:three_prime_UTR 40.0%
CATCTCAACAACAATCACCA+TGG - chr7_1:5766381-5766400 Msa1006840:three_prime_UTR 40.0%
ACAACTAAGAAGAGAGCTAG+TGG - chr7_1:5766645-5766664 Msa1006840:exon 40.0%
TTTCCAGTAACAGGACACTT+AGG + chr7_1:5766672-5766691 None:intergenic 40.0%
TTACTGGAAAGAGGATCCAA+GGG - chr7_1:5766682-5766701 Msa1006840:CDS 40.0%
ATAGCGTCAAAGGTCATAGT+TGG + chr7_1:5767465-5767484 None:intergenic 40.0%
TAGAAAGGGTAGGGACAATA+AGG + chr7_1:5767556-5767575 None:intergenic 40.0%
AAGCTTAGATGCTGTGTGAT+AGG + chr7_1:5767629-5767648 None:intergenic 40.0%
!! GGAAAGTGTCAAGATTATGC+AGG + chr7_1:5767729-5767748 None:intergenic 40.0%
TATTCAGTAGGTCTCAAGTG+TGG + chr7_1:5767898-5767917 None:intergenic 40.0%
TGAGACCTACTGAATACAAG+AGG - chr7_1:5767902-5767921 Msa1006840:intron 40.0%
CTAGACCTCTTGTATTCAGT+AGG + chr7_1:5767910-5767929 None:intergenic 40.0%
!!! GCTTATGGAGGTGTTTTATC+CGG - chr7_1:5767961-5767980 Msa1006840:intron 40.0%
ACGCTATTCAATCTTTGTGC+AGG - chr7_1:5768068-5768087 Msa1006840:intron 40.0%
!! CGCCCCTCTTTCATTTTTCT+AGG - chr7_1:5766351-5766370 Msa1006840:three_prime_UTR 45.0%
GTATGTGAGTCTCTGAACCA+TGG + chr7_1:5766401-5766420 None:intergenic 45.0%
TTCAGAGACTCACATACCGT+AGG - chr7_1:5766404-5766423 Msa1006840:three_prime_UTR 45.0%
! AACACGATGCTGGTTGGATT+TGG + chr7_1:5766446-5766465 None:intergenic 45.0%
CTTAACAACACGATGCTGGT+TGG + chr7_1:5766452-5766471 None:intergenic 45.0%
GTGTCTTAACAACACGATGC+TGG + chr7_1:5766456-5766475 None:intergenic 45.0%
! CATCGTGTTGTTAAGACACC+TGG - chr7_1:5766457-5766476 Msa1006840:three_prime_UTR 45.0%
AGTGTCCTGTTACTGGAAAG+AGG - chr7_1:5766673-5766692 Msa1006840:CDS 45.0%
TGGATCCTCTTTCCAGTAAC+AGG + chr7_1:5766681-5766700 None:intergenic 45.0%
GTTACTGGAAAGAGGATCCA+AGG - chr7_1:5766681-5766700 Msa1006840:CDS 45.0%
TACTGGAAAGAGGATCCAAG+GGG - chr7_1:5766683-5766702 Msa1006840:CDS 45.0%
TTGAGCGAATGTTCTTGGAG+TGG - chr7_1:5766996-5767015 Msa1006840:intron 45.0%
TGAGCGAATGTTCTTGGAGT+GGG - chr7_1:5766997-5767016 Msa1006840:intron 45.0%
AAGGGTAGGGACAATAAGGA+CGG + chr7_1:5767552-5767571 None:intergenic 45.0%
TCATTGCTTCTTCTCCCTGA+TGG - chr7_1:5767781-5767800 Msa1006840:intron 45.0%
AGTGCATGTCATGACCATCA+GGG + chr7_1:5767798-5767817 None:intergenic 45.0%
ACAAGAGGTCTAGATTGCCT+AGG - chr7_1:5767917-5767936 Msa1006840:intron 45.0%
CATAAGCCCTGTTAACAGTG+CGG + chr7_1:5767948-5767967 None:intergenic 45.0%
ACTGTTAACAGGGCTTATGG+AGG - chr7_1:5767949-5767968 Msa1006840:intron 45.0%
!!! TATGGAGGTGTTTTATCCGG+AGG - chr7_1:5767964-5767983 Msa1006840:intron 45.0%
! TTTTATCCGGAGGAGCAGTT+AGG - chr7_1:5767974-5767993 Msa1006840:intron 45.0%
TTTATCCGGAGGAGCAGTTA+GGG - chr7_1:5767975-5767994 Msa1006840:intron 45.0%
GCTCTTCAACAAGGAAAGCA+CGG + chr7_1:5768099-5768118 None:intergenic 45.0%
!! CGCCCCTCTTTCATTTTTCT+AGG - chr7_1:5766351-5766370 Msa1006840:three_prime_UTR 45.0%
GTATGTGAGTCTCTGAACCA+TGG + chr7_1:5766401-5766420 None:intergenic 45.0%
TTCAGAGACTCACATACCGT+AGG - chr7_1:5766404-5766423 Msa1006840:three_prime_UTR 45.0%
! AACACGATGCTGGTTGGATT+TGG + chr7_1:5766446-5766465 None:intergenic 45.0%
CTTAACAACACGATGCTGGT+TGG + chr7_1:5766452-5766471 None:intergenic 45.0%
GTGTCTTAACAACACGATGC+TGG + chr7_1:5766456-5766475 None:intergenic 45.0%
! CATCGTGTTGTTAAGACACC+TGG - chr7_1:5766457-5766476 Msa1006840:three_prime_UTR 45.0%
AGTGTCCTGTTACTGGAAAG+AGG - chr7_1:5766673-5766692 Msa1006840:CDS 45.0%
TGGATCCTCTTTCCAGTAAC+AGG + chr7_1:5766681-5766700 None:intergenic 45.0%
GTTACTGGAAAGAGGATCCA+AGG - chr7_1:5766681-5766700 Msa1006840:CDS 45.0%
TACTGGAAAGAGGATCCAAG+GGG - chr7_1:5766683-5766702 Msa1006840:CDS 45.0%
TTGAGCGAATGTTCTTGGAG+TGG - chr7_1:5766996-5767015 Msa1006840:intron 45.0%
TGAGCGAATGTTCTTGGAGT+GGG - chr7_1:5766997-5767016 Msa1006840:intron 45.0%
AAGGGTAGGGACAATAAGGA+CGG + chr7_1:5767552-5767571 None:intergenic 45.0%
TCATTGCTTCTTCTCCCTGA+TGG - chr7_1:5767781-5767800 Msa1006840:intron 45.0%
AGTGCATGTCATGACCATCA+GGG + chr7_1:5767798-5767817 None:intergenic 45.0%
ACAAGAGGTCTAGATTGCCT+AGG - chr7_1:5767917-5767936 Msa1006840:intron 45.0%
CATAAGCCCTGTTAACAGTG+CGG + chr7_1:5767948-5767967 None:intergenic 45.0%
ACTGTTAACAGGGCTTATGG+AGG - chr7_1:5767949-5767968 Msa1006840:intron 45.0%
!!! TATGGAGGTGTTTTATCCGG+AGG - chr7_1:5767964-5767983 Msa1006840:intron 45.0%
! TTTTATCCGGAGGAGCAGTT+AGG - chr7_1:5767974-5767993 Msa1006840:intron 45.0%
TTTATCCGGAGGAGCAGTTA+GGG - chr7_1:5767975-5767994 Msa1006840:intron 45.0%
GCTCTTCAACAAGGAAAGCA+CGG + chr7_1:5768099-5768118 None:intergenic 45.0%
TGGCATAGCTGTGTCTCCTA+CGG + chr7_1:5766423-5766442 None:intergenic 50.0%
! ACGATGCTGGTTGGATTTGG+TGG + chr7_1:5766443-5766462 None:intergenic 50.0%
GGACCTAAGTGTCCTGTTAC+TGG - chr7_1:5766666-5766685 Msa1006840:CDS 50.0%
GAGTGCATGTCATGACCATC+AGG + chr7_1:5767799-5767818 None:intergenic 50.0%
GTCTCAAGTGTGGAATCTGC+AGG + chr7_1:5767888-5767907 None:intergenic 50.0%
CGCACTGTTAACAGGGCTTA+TGG - chr7_1:5767946-5767965 Msa1006840:intron 50.0%
TGGCATAGCTGTGTCTCCTA+CGG + chr7_1:5766423-5766442 None:intergenic 50.0%
! ACGATGCTGGTTGGATTTGG+TGG + chr7_1:5766443-5766462 None:intergenic 50.0%
GGACCTAAGTGTCCTGTTAC+TGG - chr7_1:5766666-5766685 Msa1006840:CDS 50.0%
GAGTGCATGTCATGACCATC+AGG + chr7_1:5767799-5767818 None:intergenic 50.0%
GTCTCAAGTGTGGAATCTGC+AGG + chr7_1:5767888-5767907 None:intergenic 50.0%
CGCACTGTTAACAGGGCTTA+TGG - chr7_1:5767946-5767965 Msa1006840:intron 50.0%
TTAACAGTGCGGCGGTTCCT+AGG + chr7_1:5767937-5767956 None:intergenic 55.0%
GAACCGCCGCACTGTTAACA+GGG - chr7_1:5767939-5767958 Msa1006840:intron 55.0%
AAGCCCTGTTAACAGTGCGG+CGG + chr7_1:5767945-5767964 None:intergenic 55.0%
CCTTTCCCTAACTGCTCCTC+CGG + chr7_1:5767983-5768002 None:intergenic 55.0%
TTAACAGTGCGGCGGTTCCT+AGG + chr7_1:5767937-5767956 None:intergenic 55.0%
GAACCGCCGCACTGTTAACA+GGG - chr7_1:5767939-5767958 Msa1006840:intron 55.0%
AAGCCCTGTTAACAGTGCGG+CGG + chr7_1:5767945-5767964 None:intergenic 55.0%
CCTTTCCCTAACTGCTCCTC+CGG + chr7_1:5767983-5768002 None:intergenic 55.0%
GGAACCGCCGCACTGTTAAC+AGG - chr7_1:5767938-5767957 Msa1006840:intron 60.0%
CCGGAGGAGCAGTTAGGGAA+AGG - chr7_1:5767980-5767999 Msa1006840:intron 60.0%
GGAACCGCCGCACTGTTAAC+AGG - chr7_1:5767938-5767957 Msa1006840:intron 60.0%
CCGGAGGAGCAGTTAGGGAA+AGG - chr7_1:5767980-5767999 Msa1006840:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 5766343 5768497 5766343 ID=Msa1006840;Name=Msa1006840
chr7_1 mRNA 5766343 5768497 5766343 ID=Msa1006840-mRNA-1;Parent=Msa1006840;Name=Msa1006840-mRNA-1;_AED=0.26;_eAED=0.26;_QI=57|1|1|1|1|1|4|314|120
chr7_1 exon 5766343 5766750 5766343 ID=Msa1006840-mRNA-1:exon:1840;Parent=Msa1006840-mRNA-1
chr7_1 exon 5766839 5766948 5766839 ID=Msa1006840-mRNA-1:exon:1839;Parent=Msa1006840-mRNA-1
chr7_1 exon 5768136 5768215 5768136 ID=Msa1006840-mRNA-1:exon:1838;Parent=Msa1006840-mRNA-1
chr7_1 exon 5768362 5768497 5768362 ID=Msa1006840-mRNA-1:exon:1837;Parent=Msa1006840-mRNA-1
chr7_1 five_prime_UTR 5768441 5768497 5768441 ID=Msa1006840-mRNA-1:five_prime_utr;Parent=Msa1006840-mRNA-1
chr7_1 CDS 5768362 5768440 5768362 ID=Msa1006840-mRNA-1:cds;Parent=Msa1006840-mRNA-1
chr7_1 CDS 5768136 5768215 5768136 ID=Msa1006840-mRNA-1:cds;Parent=Msa1006840-mRNA-1
chr7_1 CDS 5766839 5766948 5766839 ID=Msa1006840-mRNA-1:cds;Parent=Msa1006840-mRNA-1
chr7_1 CDS 5766657 5766750 5766657 ID=Msa1006840-mRNA-1:cds;Parent=Msa1006840-mRNA-1
chr7_1 three_prime_UTR 5766343 5766656 5766343 ID=Msa1006840-mRNA-1:three_prime_utr;Parent=Msa1006840-mRNA-1
Gene Sequence

>Msa1006840

ATGGTTCAGAGACTCACATACCGTAGGAGACACAGCTATGCCACCAAATCCAACCAGCATCGTGTTGTTAAGACACCTGGTGGAAAGTTGGTTTATCAGACAACTAAGAAGAGAGCTAGTGGACCTAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCACACTTGAGACCTACTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCCGCACTGTTAACAGGGCTTATGGAGGTGTTTTATCCGGAGGAGCAGTTAGGGAAAGGATTATCCGTGCTTTCCTTGTTGAAGAGCAAAAAATAGTCAAGAAAGTTTTGAAGATCCAGAAAACAAAAGAAAAGCAAGCAGCTAAGAGTTAA

Protein sequence

>Msa1006840

MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKS*