AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090520 MtrunA17_Chr1g0210481 96.471 85 3 0 1 85 57 141 3.35e-56 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090520 AT5G04750.1 57.143 70 24 4 13 80 25 90 5.53e-14 61.6

Find 53 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGTTGAGGAGGGAGTT+TGG 0.243867 1_2:-72588078 Msa0090520:three_prime_UTR
TCGAAGCTACTCTCAATTCT+AGG 0.308350 1_2:-72588046 Msa0090520:three_prime_UTR
ATAATTTGGTACCTTGTTAT+CGG 0.335217 1_2:+72590007 None:intergenic
TCATGTAGAACTGTTCGATT+TGG 0.346117 1_2:-72587913 Msa0090520:three_prime_UTR
ACATGATGGATGCAACTAAA+TGG 0.355735 1_2:+72588271 None:intergenic
ATCTGTAGGTTTCTCCGCCT+TGG 0.365908 1_2:+72590034 None:intergenic
CTAGCCGTCAAGGTCACTTA+AGG 0.384006 1_2:-72588409 Msa0090520:three_prime_UTR
ATGCATGTGATGTGAGCATT+AGG 0.389168 1_2:+72588018 None:intergenic
TCACATGCATATAAAATTGT+TGG 0.391346 1_2:-72588005 Msa0090520:three_prime_UTR
TTAGTTGCATCCATCATGTT+TGG 0.401272 1_2:-72588267 Msa0090520:three_prime_UTR
CAAAGAAAACGTCTACATTC+AGG 0.413338 1_2:-72590184 Msa0090520:intron
GAAATGGGAGAGGGAAAGGT+TGG 0.423182 1_2:-72590084 Msa0090520:CDS
ACAGAAGCTAGCGGCTGATA+AGG 0.427012 1_2:-72590057 Msa0090520:CDS
TTTATTTGTAGTTTCGTCAA+TGG 0.432771 1_2:-72588306 Msa0090520:three_prime_UTR
TGCATGTGATGTGAGCATTA+GGG 0.448966 1_2:+72588019 None:intergenic
CACCTAGGCTGACCTTAGAT+TGG 0.453589 1_2:+72587938 None:intergenic
AGGGATCGTGACTCGTTCAA+TGG 0.456515 1_2:-72590280 Msa0090520:CDS
GGAGTCTTAGCTCCAATCTA+AGG 0.465363 1_2:-72587950 Msa0090520:three_prime_UTR
CTTCCCTTAAGTGACCTTGA+CGG 0.483822 1_2:+72588405 None:intergenic
TAGCCGTCAAGGTCACTTAA+GGG 0.484955 1_2:-72588408 Msa0090520:three_prime_UTR
TTGTTATCGGCATTATCTGT+AGG 0.488471 1_2:+72590020 None:intergenic
AGATTAAGATAGTAATGAAA+GGG 0.490479 1_2:-72587971 Msa0090520:three_prime_UTR
TATTGAGATTCAGTTGAGGA+GGG 0.492764 1_2:-72588085 Msa0090520:three_prime_UTR
ATCGGTCTTGCTAGCCGTCA+AGG 0.499625 1_2:-72588419 Msa0090520:three_prime_UTR
TAGATTAAGATAGTAATGAA+AGG 0.501246 1_2:-72587972 Msa0090520:three_prime_UTR
ATTTGAATGTAGAAACCTGA+TGG 0.520627 1_2:-72588462 Msa0090520:intron
ATATTGAGATTCAGTTGAGG+AGG 0.524048 1_2:-72588086 Msa0090520:three_prime_UTR
TCTCGCTTCTTCAGCGGCAA+AGG 0.525127 1_2:-72590234 Msa0090520:CDS
CCAGCCCAGTAAAATATCAC+AGG 0.534808 1_2:+72588218 None:intergenic
TTTGTGTGTAGAAATGGGAG+AGG 0.537501 1_2:-72590094 Msa0090520:intron
TCTTGCTAAATAAAAGAGCT+AGG 0.543420 1_2:-72587864 Msa0090520:three_prime_UTR
TTGTGTGTAGAAATGGGAGA+GGG 0.546268 1_2:-72590093 Msa0090520:intron
TGTAGAAATGGGAGAGGGAA+AGG 0.549281 1_2:-72590088 Msa0090520:intron
ACATAATGTACCAAACATGA+TGG 0.562912 1_2:+72588257 None:intergenic
ATGTGATTGCAATGAACCGC+TGG 0.586162 1_2:+72590355 None:intergenic
TACAGATAATGCCGATAACA+AGG 0.591322 1_2:-72590018 Msa0090520:intron
CCAGTAAAATATCACAGGGA+AGG 0.592299 1_2:+72588223 None:intergenic
TTTGAATGTAGAAACCTGAT+GGG 0.600438 1_2:-72588461 Msa0090520:intron
TCAATGGATTCAACATCTCG+TGG 0.600776 1_2:-72590264 Msa0090520:CDS
TGAGATCAGCACTGAGTCGA+GGG 0.604557 1_2:-72590299 Msa0090520:CDS
ATGAGATCAGCACTGAGTCG+AGG 0.608842 1_2:-72590300 Msa0090520:CDS
GCTTCTTCTCGCTTCTTCAG+CGG 0.618308 1_2:-72590240 Msa0090520:CDS
GCATGTGATGTGAGCATTAG+GGG 0.628230 1_2:+72588020 None:intergenic
CTCCAATCTAAGGTCAGCCT+AGG 0.629742 1_2:-72587940 Msa0090520:three_prime_UTR
GCTAGCGGCTGATAAGGCCA+AGG 0.640541 1_2:-72590051 Msa0090520:CDS
CAAAGGTAAGATTCTTAGCG+AGG 0.644514 1_2:-72590217 Msa0090520:CDS
CAGCCCAGTAAAATATCACA+GGG 0.644544 1_2:+72588219 None:intergenic
CAGTTCTACATGAATCACCT+AGG 0.663049 1_2:+72587923 None:intergenic
AGCGGCTGATAAGGCCAAGG+CGG 0.664107 1_2:-72590048 Msa0090520:CDS
TGGATATTGAGATTCAGTTG+AGG 0.669746 1_2:-72588089 Msa0090520:three_prime_UTR
ACTTAAGGGAAGCAATCATG+AGG 0.694142 1_2:-72588394 Msa0090520:three_prime_UTR
GTTGGAGAAACAGAAGCTAG+CGG 0.726434 1_2:-72590066 Msa0090520:CDS
ATGTAATGTGAGTTTCACTG+TGG 0.776960 1_2:-72588109 Msa0090520:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATATGTCATATA+TGG - chr1_2:72589573-72589592 Msa0090520:intron 10.0%
!!! TACCAAATTATTTTGTTTTT+AGG - chr1_2:72588212-72588231 Msa0090520:three_prime_UTR 15.0%
!! AACCTAAAAACAAAATAATT+TGG + chr1_2:72588217-72588236 None:intergenic 15.0%
!!! AATTTTAAGATATGAATCAT+AGG + chr1_2:72588445-72588464 None:intergenic 15.0%
!! AGAAAGAAAGAAAAAAAAAA+AGG + chr1_2:72589084-72589103 None:intergenic 15.0%
!!! TTTTTTTTTTTCTTTCTTTC+TGG - chr1_2:72589083-72589102 Msa0090520:intron 15.0%
!!! TTTTTTTTTTCTTTCTTTCT+GGG - chr1_2:72589084-72589103 Msa0090520:intron 15.0%
!!! AATTTTAAAAGTGAAGAATT+TGG + chr1_2:72589261-72589280 None:intergenic 15.0%
!!! GAAATCATTTTGTTCAAAAA+TGG - chr1_2:72587882-72587901 Msa0090520:three_prime_UTR 20.0%
!! TAAAAAAGGATGAAGAAAAA+GGG + chr1_2:72588061-72588080 None:intergenic 20.0%
!!! ATATTTCTTTCTGCATATTT+TGG - chr1_2:72588247-72588266 Msa0090520:three_prime_UTR 20.0%
!!! TATTTCTTTCTGCATATTTT+GGG - chr1_2:72588248-72588267 Msa0090520:three_prime_UTR 20.0%
!! ATATTAATAGATCACAAATC+TGG + chr1_2:72588285-72588304 None:intergenic 20.0%
!!! TTTTTGATTTGGTGTATTTT+TGG - chr1_2:72588338-72588357 Msa0090520:three_prime_UTR 20.0%
!!! TTTGAAATTGTATCATATGA+TGG - chr1_2:72588417-72588436 Msa0090520:three_prime_UTR 20.0%
!! TATCAAAGTTACAGAATATT+GGG + chr1_2:72588526-72588545 None:intergenic 20.0%
!! ATATCAAAGTTACAGAATAT+TGG + chr1_2:72588527-72588546 None:intergenic 20.0%
!! TAACTTTGATATGAATATGA+TGG - chr1_2:72588535-72588554 Msa0090520:intron 20.0%
!! GAAAGAAAAAAAAAAAGGAA+GGG + chr1_2:72589079-72589098 None:intergenic 20.0%
!! AGAAAGAAAAAAAAAAAGGA+AGG + chr1_2:72589080-72589099 None:intergenic 20.0%
!!! TTTTTTTTTCTTTCTTTCTG+GGG - chr1_2:72589085-72589104 Msa0090520:intron 20.0%
!! GCTTAAGATAATAATCTAAA+GGG - chr1_2:72589454-72589473 Msa0090520:intron 20.0%
!! TAGATTAAGATAGTAATGAA+AGG - chr1_2:72590235-72590254 Msa0090520:CDS 20.0%
!! AGATTAAGATAGTAATGAAA+GGG - chr1_2:72590236-72590255 Msa0090520:CDS 20.0%
! AAAAAAGGATGAAGAAAAAG+GGG + chr1_2:72588060-72588079 None:intergenic 25.0%
! CTAAAAAAGGATGAAGAAAA+AGG + chr1_2:72588062-72588081 None:intergenic 25.0%
! CAAGAAATTGGATCTAAAAA+AGG + chr1_2:72588075-72588094 None:intergenic 25.0%
!! TTGATTTTTGTGTGTAGAAA+TGG - chr1_2:72588107-72588126 Msa0090520:three_prime_UTR 25.0%
!! TGATTTTTGTGTGTAGAAAT+GGG - chr1_2:72588108-72588127 Msa0090520:three_prime_UTR 25.0%
!! ATAATTTGGTACCTTGTTAT+CGG + chr1_2:72588203-72588222 None:intergenic 25.0%
! TCAAAAAATCATCTCAGAAT+TGG + chr1_2:72588325-72588344 None:intergenic 25.0%
!!! TCTGAGATGATTTTTTGATT+TGG - chr1_2:72588327-72588346 Msa0090520:three_prime_UTR 25.0%
! AGAATTTAAGAAGCTAAAAG+TGG + chr1_2:72588579-72588598 None:intergenic 25.0%
!!! CTTTTAGCTTCTTAAATTCT+TGG - chr1_2:72588579-72588598 Msa0090520:intron 25.0%
!!! GAATTTTGTTTCTTTTACCA+AGG - chr1_2:72588607-72588626 Msa0090520:intron 25.0%
!!! GAACATATTTTTGCTTAATG+TGG - chr1_2:72588633-72588652 Msa0090520:intron 25.0%
! ATTCGATTTCATTGAAACTT+GGG + chr1_2:72588870-72588889 None:intergenic 25.0%
! AATTCGATTTCATTGAAACT+TGG + chr1_2:72588871-72588890 None:intergenic 25.0%
!!! TTTAGTTGATAGCAAAATTG+TGG + chr1_2:72589198-72589217 None:intergenic 25.0%
! CGCTTAAGATAATAATCTAA+AGG - chr1_2:72589453-72589472 Msa0090520:intron 25.0%
!! ATTAGATTAGTTATCTTTGG+AGG + chr1_2:72589489-72589508 None:intergenic 25.0%
! TCCAAAGATAACTAATCTAA+TGG - chr1_2:72589488-72589507 Msa0090520:intron 25.0%
! CCAAAGATAACTAATCTAAT+GGG - chr1_2:72589489-72589508 Msa0090520:intron 25.0%
! TCCAAAGATAACTAATCTAA+GGG - chr1_2:72589488-72589507 Msa0090520:intron 25.0%
! TTAATAAAACGTGAACTTGA+TGG + chr1_2:72589562-72589581 None:intergenic 25.0%
!!! ACATTTAAGTTTTACTGCTA+TGG - chr1_2:72589665-72589684 Msa0090520:intron 25.0%
!!! CTCAAAAGAACTGATTTTAT+CGG - chr1_2:72589770-72589789 Msa0090520:intron 25.0%
! TTTATTTGTAGTTTCGTCAA+TGG - chr1_2:72589901-72589920 Msa0090520:intron 25.0%
! TCACATGCATATAAAATTGT+TGG - chr1_2:72590202-72590221 Msa0090520:CDS 25.0%
AAAAAGGATGAAGAAAAAGG+GGG + chr1_2:72588059-72588078 None:intergenic 30.0%
GCAAAAATATGTTCAAACCT+TGG + chr1_2:72588627-72588646 None:intergenic 30.0%
AATTCGATTTCACTGTCATA+TGG - chr1_2:72588707-72588726 Msa0090520:intron 30.0%
! AAGCAACACACTCTTTTTAA+AGG - chr1_2:72588758-72588777 Msa0090520:intron 30.0%
! AGCAACACACTCTTTTTAAA+GGG - chr1_2:72588759-72588778 Msa0090520:intron 30.0%
TAGTTAATGACTAAACAGTG+AGG + chr1_2:72588790-72588809 None:intergenic 30.0%
TAGTTTCACTCGATTTCTAA+AGG + chr1_2:72588896-72588915 None:intergenic 30.0%
AAATCGAGTGAAACTAGAAA+TGG - chr1_2:72588900-72588919 Msa0090520:intron 30.0%
! AATTTATGCTGTACCCTTTT+TGG - chr1_2:72589013-72589032 Msa0090520:intron 30.0%
TTGGTTACTCTTTCCAAAAA+GGG + chr1_2:72589029-72589048 None:intergenic 30.0%
ATTGGTTACTCTTTCCAAAA+AGG + chr1_2:72589030-72589049 None:intergenic 30.0%
AGTTGTGTATAGTGTAAAAG+AGG + chr1_2:72589134-72589153 None:intergenic 30.0%
! TCTTTTACACTATACACAAC+TGG - chr1_2:72589133-72589152 Msa0090520:intron 30.0%
!!! GTATGCTTTAGCACATTTTT+TGG - chr1_2:72589319-72589338 Msa0090520:intron 30.0%
! CCCATTAGATTAGTTATCTT+TGG + chr1_2:72589492-72589511 None:intergenic 30.0%
! CTTAGATTAGTTATCTTTGG+AGG + chr1_2:72589524-72589543 None:intergenic 30.0%
CTCCAAAGATAACTAATCTA+AGG - chr1_2:72589487-72589506 Msa0090520:intron 30.0%
CCAAAGATAACTAATCTAAG+GGG - chr1_2:72589524-72589543 Msa0090520:intron 30.0%
! TTTTACTGCTATGGTGAATT+TGG - chr1_2:72589674-72589693 Msa0090520:intron 30.0%
ATTTGAATGTAGAAACCTGA+TGG - chr1_2:72589745-72589764 Msa0090520:intron 30.0%
TTTGAATGTAGAAACCTGAT+GGG - chr1_2:72589746-72589765 Msa0090520:intron 30.0%
ACATAATGTACCAAACATGA+TGG + chr1_2:72589953-72589972 None:intergenic 30.0%
TCTTGCTAAATAAAAGAGCT+AGG - chr1_2:72590343-72590362 Msa0090520:five_prime_UTR 30.0%
! CTGAATGTAGACGTTTTCTT+TGG + chr1_2:72588025-72588044 None:intergenic 35.0%
CAAAGAAAACGTCTACATTC+AGG - chr1_2:72588023-72588042 Msa0090520:three_prime_UTR 35.0%
! CCAATTTCTTGCTTCTGAAA+CGG - chr1_2:72588084-72588103 Msa0090520:three_prime_UTR 35.0%
TTGTTATCGGCATTATCTGT+AGG + chr1_2:72588190-72588209 None:intergenic 35.0%
TACAGATAATGCCGATAACA+AGG - chr1_2:72588189-72588208 Msa0090520:three_prime_UTR 35.0%
AGAATATTGGGAGCTACAAA+AGG + chr1_2:72588514-72588533 None:intergenic 35.0%
!! GCAACACACTCTTTTTAAAG+GGG - chr1_2:72588760-72588779 Msa0090520:intron 35.0%
!! CAACACACTCTTTTTAAAGG+GGG - chr1_2:72588761-72588780 Msa0090520:intron 35.0%
AGTGAAACTAGAAATGGAGT+TGG - chr1_2:72588906-72588925 Msa0090520:intron 35.0%
AACTAGAAATGGAGTTGGAA+TGG - chr1_2:72588911-72588930 Msa0090520:intron 35.0%
AGAGTAACCAATGTTAGACT+TGG - chr1_2:72589038-72589057 Msa0090520:intron 35.0%
GTTAGTACCAAGTCTAACAT+TGG + chr1_2:72589048-72589067 None:intergenic 35.0%
TGTGTATAGTGTAAAAGAGG+TGG + chr1_2:72589131-72589150 None:intergenic 35.0%
TTGTGGAGAGATGAATGTAA+GGG + chr1_2:72589181-72589200 None:intergenic 35.0%
ATTGTGGAGAGATGAATGTA+AGG + chr1_2:72589182-72589201 None:intergenic 35.0%
ATTTGGTTGCAGTCGTTTAA+GGG + chr1_2:72589244-72589263 None:intergenic 35.0%
AATTTGGTTGCAGTCGTTTA+AGG + chr1_2:72589245-72589264 None:intergenic 35.0%
TGTCCATTGCAAATTGTTTG+TGG - chr1_2:72589371-72589390 Msa0090520:intron 35.0%
ATGCCACAAACAATTTGCAA+TGG + chr1_2:72589377-72589396 None:intergenic 35.0%
! CCCCTTAGATTAGTTATCTT+TGG + chr1_2:72589527-72589546 None:intergenic 35.0%
!! ACATGATGGATGCAACTAAA+TGG + chr1_2:72589939-72589958 None:intergenic 35.0%
TTAGTTGCATCCATCATGTT+TGG - chr1_2:72589940-72589959 Msa0090520:intron 35.0%
! CTTCCCTGTGATATTTTACT+GGG - chr1_2:72589985-72590004 Msa0090520:intron 35.0%
ATGTAATGTGAGTTTCACTG+TGG - chr1_2:72590098-72590117 Msa0090520:intron 35.0%
TGGATATTGAGATTCAGTTG+AGG - chr1_2:72590118-72590137 Msa0090520:intron 35.0%
ATATTGAGATTCAGTTGAGG+AGG - chr1_2:72590121-72590140 Msa0090520:intron 35.0%
TATTGAGATTCAGTTGAGGA+GGG - chr1_2:72590122-72590141 Msa0090520:intron 35.0%
TCATGTAGAACTGTTCGATT+TGG - chr1_2:72590294-72590313 Msa0090520:CDS 35.0%
! TCAATGGATTCAACATCTCG+TGG - chr1_2:72587943-72587962 Msa0090520:three_prime_UTR 40.0%
CAAAGGTAAGATTCTTAGCG+AGG - chr1_2:72587990-72588009 Msa0090520:three_prime_UTR 40.0%
CCGTTTCAGAAGCAAGAAAT+TGG + chr1_2:72588087-72588106 None:intergenic 40.0%
TTTGTGTGTAGAAATGGGAG+AGG - chr1_2:72588113-72588132 Msa0090520:three_prime_UTR 40.0%
TTGTGTGTAGAAATGGGAGA+GGG - chr1_2:72588114-72588133 Msa0090520:three_prime_UTR 40.0%
! ACGTGGTGATGACATAATTC+TGG - chr1_2:72588662-72588681 Msa0090520:intron 40.0%
!! TGACATAATTCTGGAACCTG+TGG - chr1_2:72588671-72588690 Msa0090520:intron 40.0%
ATTCAATGAAACACGACCAC+AGG + chr1_2:72588690-72588709 None:intergenic 40.0%
TCGATTTCACTGTCATATGG+TGG - chr1_2:72588710-72588729 Msa0090520:intron 40.0%
!! AAAAGAGTGTGTTGCTTGCT+AGG + chr1_2:72588755-72588774 None:intergenic 40.0%
! CTACGAACACACTCTTTTGA+AGG - chr1_2:72588811-72588830 Msa0090520:intron 40.0%
!! CACTCTTTTGAAGGTGGATT+TGG - chr1_2:72588820-72588839 Msa0090520:intron 40.0%
!! TTGAAGGTGGATTTGGCTTT+CGG - chr1_2:72588827-72588846 Msa0090520:intron 40.0%
GAAATGGAGTTGGAATGGTA+AGG - chr1_2:72588916-72588935 Msa0090520:intron 40.0%
!! TTTTCTTTCTTTCTGGGGAG+TGG - chr1_2:72589090-72589109 Msa0090520:intron 40.0%
TTCCATGTTGCTGTGAATCA+AGG - chr1_2:72589348-72589367 Msa0090520:intron 40.0%
ACTTAAGGGAAGCAATCATG+AGG - chr1_2:72589813-72589832 Msa0090520:intron 40.0%
CCAGTAAAATATCACAGGGA+AGG + chr1_2:72589987-72590006 None:intergenic 40.0%
! CCTTCCCTGTGATATTTTAC+TGG - chr1_2:72589984-72590003 Msa0090520:intron 40.0%
CAGCCCAGTAAAATATCACA+GGG + chr1_2:72589991-72590010 None:intergenic 40.0%
TCGAAGCTACTCTCAATTCT+AGG - chr1_2:72590161-72590180 Msa0090520:intron 40.0%
TGCATGTGATGTGAGCATTA+GGG + chr1_2:72590191-72590210 None:intergenic 40.0%
ATGCATGTGATGTGAGCATT+AGG + chr1_2:72590192-72590211 None:intergenic 40.0%
CAGTTCTACATGAATCACCT+AGG + chr1_2:72590287-72590306 None:intergenic 40.0%
TGTAGAAATGGGAGAGGGAA+AGG - chr1_2:72588119-72588138 Msa0090520:three_prime_UTR 45.0%
GTTGGAGAAACAGAAGCTAG+CGG - chr1_2:72588141-72588160 Msa0090520:three_prime_UTR 45.0%
GCTTAATGTGGTATTGCACG+TGG - chr1_2:72588645-72588664 Msa0090520:intron 45.0%
!! CGAACACACTCTTTTGAAGG+TGG - chr1_2:72588814-72588833 Msa0090520:intron 45.0%
CACCTTGATTCACAGCAACA+TGG + chr1_2:72589353-72589372 None:intergenic 45.0%
!! CAGTTCTTTTGAGTCCCATC+AGG + chr1_2:72589763-72589782 None:intergenic 45.0%
TAGCCGTCAAGGTCACTTAA+GGG - chr1_2:72589799-72589818 Msa0090520:intron 45.0%
CTTCCCTTAAGTGACCTTGA+CGG + chr1_2:72589805-72589824 None:intergenic 45.0%
CCAGCCCAGTAAAATATCAC+AGG + chr1_2:72589992-72590011 None:intergenic 45.0%
! CCTGTGATATTTTACTGGGC+TGG - chr1_2:72589989-72590008 Msa0090520:intron 45.0%
!!! ATATTTTACTGGGCTGGCAG+TGG - chr1_2:72589995-72590014 Msa0090520:intron 45.0%
ATTCAGTTGAGGAGGGAGTT+TGG - chr1_2:72590129-72590148 Msa0090520:intron 45.0%
GCATGTGATGTGAGCATTAG+GGG + chr1_2:72590190-72590209 None:intergenic 45.0%
GGAGTCTTAGCTCCAATCTA+AGG - chr1_2:72590257-72590276 Msa0090520:CDS 45.0%
! ATGAGATCAGCACTGAGTCG+AGG - chr1_2:72587907-72587926 Msa0090520:three_prime_UTR 50.0%
! TGAGATCAGCACTGAGTCGA+GGG - chr1_2:72587908-72587927 Msa0090520:three_prime_UTR 50.0%
AGGGATCGTGACTCGTTCAA+TGG - chr1_2:72587927-72587946 Msa0090520:three_prime_UTR 50.0%
GCTTCTTCTCGCTTCTTCAG+CGG - chr1_2:72587967-72587986 Msa0090520:three_prime_UTR 50.0%
GAAATGGGAGAGGGAAAGGT+TGG - chr1_2:72588123-72588142 Msa0090520:three_prime_UTR 50.0%
ACAGAAGCTAGCGGCTGATA+AGG - chr1_2:72588150-72588169 Msa0090520:three_prime_UTR 50.0%
ATCTGTAGGTTTCTCCGCCT+TGG + chr1_2:72588176-72588195 None:intergenic 50.0%
TGGAGTTGGAATGGTAAGGC+AGG - chr1_2:72588920-72588939 Msa0090520:intron 50.0%
ACAACTGCGCACCATGGTAA+GGG + chr1_2:72589432-72589451 None:intergenic 50.0%
CTAGCCGTCAAGGTCACTTA+AGG - chr1_2:72589798-72589817 Msa0090520:intron 50.0%
! CTCCAATCTAAGGTCAGCCT+AGG - chr1_2:72590267-72590286 Msa0090520:CDS 50.0%
CACCTAGGCTGACCTTAGAT+TGG + chr1_2:72590272-72590291 None:intergenic 50.0%
TCTCGCTTCTTCAGCGGCAA+AGG - chr1_2:72587973-72587992 Msa0090520:three_prime_UTR 55.0%
AATCATCCCCCTGCTGTGCT+TGG + chr1_2:72589407-72589426 None:intergenic 55.0%
GGGATGATTGCCCCTTACCA+TGG - chr1_2:72589418-72589437 Msa0090520:intron 55.0%
CAACTGCGCACCATGGTAAG+GGG + chr1_2:72589431-72589450 None:intergenic 55.0%
CACAACTGCGCACCATGGTA+AGG + chr1_2:72589433-72589452 None:intergenic 55.0%
ATCGGTCTTGCTAGCCGTCA+AGG - chr1_2:72589788-72589807 Msa0090520:intron 55.0%
GCTAGCGGCTGATAAGGCCA+AGG - chr1_2:72588156-72588175 Msa0090520:three_prime_UTR 60.0%
AGCGGCTGATAAGGCCAAGG+CGG - chr1_2:72588159-72588178 Msa0090520:three_prime_UTR 60.0%
ATGCGCCTTCCAAGCACAGC+AGG - chr1_2:72589395-72589414 Msa0090520:intron 60.0%
TGCGCCTTCCAAGCACAGCA+GGG - chr1_2:72589396-72589415 Msa0090520:intron 60.0%
ATCCCCCTGCTGTGCTTGGA+AGG + chr1_2:72589403-72589422 None:intergenic 60.0%
AAGCGCACAACTGCGCACCA+TGG + chr1_2:72589438-72589457 None:intergenic 60.0%
GCGCCTTCCAAGCACAGCAG+GGG - chr1_2:72589397-72589416 Msa0090520:intron 65.0%
CGCCTTCCAAGCACAGCAGG+GGG - chr1_2:72589398-72589417 Msa0090520:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72587855 72590374 72587855 ID=Msa0090520;Name=Msa0090520
chr1_2 mRNA 72587855 72590374 72587855 ID=Msa0090520-mRNA-1;Parent=Msa0090520;Name=Msa0090520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|0.5|0.66|3|591|85
chr1_2 exon 72587855 72588472 72587855 ID=Msa0090520-mRNA-1:exon:25235;Parent=Msa0090520-mRNA-1
chr1_2 exon 72590019 72590105 72590019 ID=Msa0090520-mRNA-1:exon:25234;Parent=Msa0090520-mRNA-1
chr1_2 exon 72590185 72590374 72590185 ID=Msa0090520-mRNA-1:exon:25233;Parent=Msa0090520-mRNA-1
chr1_2 five_prime_UTR 72590329 72590374 72590329 ID=Msa0090520-mRNA-1:five_prime_utr;Parent=Msa0090520-mRNA-1
chr1_2 CDS 72590185 72590328 72590185 ID=Msa0090520-mRNA-1:cds;Parent=Msa0090520-mRNA-1
chr1_2 CDS 72590019 72590105 72590019 ID=Msa0090520-mRNA-1:cds;Parent=Msa0090520-mRNA-1
chr1_2 CDS 72588446 72588472 72588446 ID=Msa0090520-mRNA-1:cds;Parent=Msa0090520-mRNA-1
chr1_2 three_prime_UTR 72587855 72588445 72587855 ID=Msa0090520-mRNA-1:three_prime_utr;Parent=Msa0090520-mRNA-1
Gene Sequence

>Msa0090520

ATGGCAATGAGATCAGCACTGAGTCGAGGGATCGTGACTCGTTCAATGGATTCAACATCTCGTGGAGCTTCTTCTCGCTTCTTCAGCGGCAAAGGTAAGATTCTTAGCGAGGAAGAACAAGCCAAAGAAAACGTCTACATTCAGAAATGGGAGAGGGAAAGGTTGGAGAAACAGAAGCTAGCGGCTGATAAGGCCAAGGCGGAGAAACCTACAGATAATGCCGATAACAAGAAACCTGATGGGACTCAAAAGAACTGA

Protein sequence

>Msa0090520

MAMRSALSRGIVTRSMDSTSRGASSRFFSGKGKILSEEEQAKENVYIQKWERERLEKQKLAADKAKAEKPTDNADNKKPDGTQKN*