AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589400 MtrunA17_Chr4g0005991 98.990 495 5 0 1 495 1 495 0.0 998
Msa0589400 MtrunA17_Chr7g0241831 84.040 495 77 2 1 494 3 496 0.0 853
Msa0589400 MtrunA17_Chr8g0348781 62.118 491 179 5 7 491 10 499 0.0 634
Msa0589400 MtrunA17_Chr1g0170421 57.895 494 200 5 7 494 41 532 0.0 590
Msa0589400 MtrunA17_Chr5g0435581 51.255 478 223 4 21 492 2 475 2.52e-164 474
Msa0589400 MtrunA17_Chr5g0443341 50.509 491 227 7 7 491 51 531 9.13e-163 471
Msa0589400 MtrunA17_Chr3g0096481 47.992 498 234 9 7 493 46 529 6.90e-155 451
Msa0589400 MtrunA17_Chr1g0194391 43.542 480 254 8 17 489 60 529 2.60e-127 381
Msa0589400 MtrunA17_Chr5g0425071 41.975 486 267 8 15 494 10 486 5.99e-121 363
Msa0589400 MtrunA17_Chr3g0096591 52.920 274 122 2 220 489 1 271 7.13e-99 298
Msa0589400 MtrunA17_Chr3g0096581 39.806 206 114 5 8 212 51 247 3.69e-41 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589400 AT2G38110.1 80.000 485 95 1 7 489 10 494 0.0 791
Msa0589400 AT4G00400.1 61.680 488 181 5 7 491 10 494 0.0 606
Msa0589400 AT1G01610.1 60.976 492 185 6 7 494 10 498 0.0 596
Msa0589400 AT3G11430.1 51.553 483 212 5 19 489 9 481 7.60e-166 478
Msa0589400 AT5G06090.1 48.765 486 221 6 19 489 7 479 7.07e-153 445
Msa0589400 AT1G06520.1 44.767 516 249 11 5 490 76 585 1.34e-146 432
Msa0589400 AT1G02390.1 39.468 489 276 9 16 490 46 528 1.51e-110 338
Msa0589400 AT4G01950.1 39.351 493 269 11 17 492 41 520 5.39e-108 331
Msa0589400 AT4G01950.2 39.351 493 269 11 17 492 69 548 1.57e-107 331
Msa0589400 AT3G11325.2 49.237 262 100 1 228 489 144 372 1.12e-83 264
Msa0589400 AT3G11325.2 37.143 105 66 0 31 135 9 113 3.99e-16 80.5
Msa0589400 AT3G11325.1 49.237 262 100 1 228 489 141 369 1.43e-83 264
Msa0589400 AT3G11325.1 37.143 105 66 0 31 135 6 110 4.09e-16 80.5

Find 132 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCCTTCCTTGTTAAAT+TGG 0.158055 4_2:+12256252 None:intergenic
GAGGCAGTTATGAAAGAATT+TGG 0.160182 4_2:-12260076 Msa0589400:CDS
TTGCACTCTTAACCTTCTTA+TGG 0.235930 4_2:-12256933 Msa0589400:CDS
CAAACTTATCTGCAAATTAA+TGG 0.250410 4_2:+12255658 None:intergenic
GAATTATCGACGGAAATTTC+AGG 0.258294 4_2:+12256012 None:intergenic
TTTGTACTACATTTAGAAAT+TGG 0.289581 4_2:+12260580 None:intergenic
GAATCATACTTTCAATCTTA+AGG 0.293063 4_2:-12256900 Msa0589400:CDS
GAGTAACAATTTGCCTGATT+TGG 0.303564 4_2:-12260053 Msa0589400:CDS
AATTATATTCAAAGGGTTCT+TGG 0.305203 4_2:-12256298 Msa0589400:CDS
AGAAGCTTGTTTCTTGGTAA+TGG 0.311340 4_2:+12257009 None:intergenic
CATTAATTTGCAGATAAGTT+TGG 0.328455 4_2:-12255657 Msa0589400:three_prime_UTR
GATAAGTATGCTATTCTTGC+AGG 0.334585 4_2:-12256235 Msa0589400:CDS
GGGCTTAGAAGCTTGTTTCT+TGG 0.336364 4_2:+12257003 None:intergenic
TCTCTACATGTCGTTCCTTC+CGG 0.339845 4_2:+12256553 None:intergenic
TTTCTTGAATCAGTTGCCTT+TGG 0.341998 4_2:-12256362 Msa0589400:CDS
AGTAACAATTTGCCTGATTT+GGG 0.342680 4_2:-12260052 Msa0589400:CDS
AATCATACTTTCAATCTTAA+GGG 0.343266 4_2:-12256899 Msa0589400:CDS
AGGGTTCTTGGAGGGACTCT+TGG 0.352717 4_2:-12256286 Msa0589400:CDS
AATGAAGTGTATTACAGTTA+TGG 0.356496 4_2:-12255767 Msa0589400:three_prime_UTR
GGATTCATGAACACAAAATA+AGG 0.356896 4_2:+12256406 None:intergenic
CCAAGGTCTCGGAGACAAAT+AGG 0.357156 4_2:+12260401 None:intergenic
GAAGCTTGTTTCTTGGTAAT+GGG 0.362820 4_2:+12257010 None:intergenic
ACATCACAAAGATGCACTAT+AGG 0.372868 4_2:+12255822 None:intergenic
AGGCAGTTATGAAAGAATTT+GGG 0.373459 4_2:-12260075 Msa0589400:CDS
TCTTGGTAATGGGTCACATT+TGG 0.374038 4_2:+12257020 None:intergenic
TGGAAGGTGTTCAATTCGTT+CGG 0.374308 4_2:-12260265 Msa0589400:CDS
GTTGTTACAGGAGTTGCATT+AGG 0.394796 4_2:-12256721 Msa0589400:CDS
TAAAAGCCGTTGCGCTTTCA+AGG 0.395510 4_2:-12256639 Msa0589400:CDS
CTGGATCTAAAACTGTTCTA+TGG 0.403705 4_2:+12256743 None:intergenic
GAGGGCAAGTGGGTTTGTTA+AGG 0.407100 4_2:-12260131 Msa0589400:CDS
TGGTACAATTATAAATTACT+TGG 0.415906 4_2:-12256841 Msa0589400:CDS
ACCTTCTTATGGATGCCAAT+TGG 0.419088 4_2:-12256922 Msa0589400:CDS
TTGAACACCTTCCATGTCTC+TGG 0.423670 4_2:+12260274 None:intergenic
TTAGAAATTGGTGGGAAAAG+TGG 0.430405 4_2:+12260592 None:intergenic
AATGCAACTCCTGTAACAAC+TGG 0.433295 4_2:+12256724 None:intergenic
AGTGCGACGAGCATGTAGTA+TGG 0.434214 4_2:+12260490 None:intergenic
GGAAGGTGTTCAATTCGTTC+GGG 0.434242 4_2:-12260264 Msa0589400:CDS
CACGGCTAGTCCAAGGTTGA+TGG 0.435779 4_2:-12260227 Msa0589400:CDS
AATGGGTCACATTTGGTCCT+TGG 0.442068 4_2:+12257027 None:intergenic
ATTGAAAGTATGATTCCAAT+TGG 0.443499 4_2:+12256907 None:intergenic
TCAGGCGAAAACGATAAAAC+TGG 0.446684 4_2:+12256030 None:intergenic
CTGTCTCCCAGTCCCAAATC+AGG 0.448486 4_2:+12260040 None:intergenic
CAATTTGCCTGATTTGGGAC+TGG 0.449611 4_2:-12260047 Msa0589400:CDS
TGTTATGATGAGAGAGAGAG+AGG 0.454275 4_2:+12260741 None:intergenic
AAGAGTGCAAATAGAGGGGT+TGG 0.455638 4_2:+12256946 None:intergenic
GTAGAGAACCGTTTCTATTG+AGG 0.458187 4_2:-12256537 Msa0589400:CDS
ATGGGATTCTTATGCACAAA+TGG 0.458400 4_2:-12255707 Msa0589400:three_prime_UTR
TCCAATTGGCATCCATAAGA+AGG 0.458669 4_2:+12256921 None:intergenic
AAAATTTCCTCCATTTGTCA+TGG 0.462801 4_2:-12260623 Msa0589400:exon
GGTGCTAGGGACTGAATTGA+TGG 0.464183 4_2:-12260167 Msa0589400:CDS
CGAAGAAAGATTAAAATTGA+AGG 0.466335 4_2:-12256189 Msa0589400:exon
AACTTTGAAATTAAACATCA+TGG 0.466576 4_2:+12255966 None:intergenic
GGAAAGGCTCCCATGACAAA+TGG 0.467493 4_2:+12260613 None:intergenic
AGATGTAACAATGTGGCATA+TGG 0.467889 4_2:-12255726 Msa0589400:three_prime_UTR
AATTTGCCTGATTTGGGACT+GGG 0.468437 4_2:-12260046 Msa0589400:CDS
AAGGAACCAGGAGTTCTTGT+TGG 0.472018 4_2:-12260112 Msa0589400:CDS
TAGTTGATTTATGTTGTTGA+GGG 0.473744 4_2:-12255853 Msa0589400:three_prime_UTR
ATGCTCGTCGCACTTGAAGC+TGG 0.474559 4_2:-12260481 Msa0589400:CDS
TGCTTCGTATTAATCGCGAC+AGG 0.478003 4_2:+12256475 None:intergenic
TTTCTCGGTCAGTGTTGCCT+AGG 0.478351 4_2:-12260318 Msa0589400:CDS
TTGTCACATTCGCGGGGCTA+AGG 0.481220 4_2:-12260360 Msa0589400:CDS
TACTACATTTAGAAATTGGT+GGG 0.484182 4_2:+12260584 None:intergenic
TTGGGAGTAGATAAGGTGCT+AGG 0.486623 4_2:-12260181 Msa0589400:CDS
CCTTTGGAATTGACTTGCAG+TGG 0.493619 4_2:-12256346 Msa0589400:CDS
TTAATCTTTGTCACATTCGC+GGG 0.496943 4_2:-12260367 Msa0589400:CDS
ATAAAGAAATTGCTTGAAGA+AGG 0.497977 4_2:-12256592 Msa0589400:CDS
GGCTCGCGGACACAAATTGT+TGG 0.498712 4_2:-12256431 Msa0589400:CDS
TTGTGAGGGAAATATGGAAT+TGG 0.500040 4_2:+12260682 None:intergenic
GAAATATATGAAAGGGACTA+AGG 0.501854 4_2:+12260429 None:intergenic
CACATTACAGGAAGGATACA+TGG 0.503595 4_2:-12257052 Msa0589400:intron
AGTTGCAAATTATATTCAAA+GGG 0.504087 4_2:-12256305 Msa0589400:CDS
CTAAGTCAGATGCCACGGTC+TGG 0.504265 4_2:+12260545 None:intergenic
AAGTTGCAAATTATATTCAA+AGG 0.504845 4_2:-12256306 Msa0589400:CDS
AGTGCATCTTTGTGATGTAA+AGG 0.507474 4_2:-12255817 Msa0589400:three_prime_UTR
TGTTCACCAACAAGAACTCC+TGG 0.509031 4_2:+12260106 None:intergenic
AAGAAAGTGATCTCATAAGT+TGG 0.509395 4_2:+12256379 None:intergenic
GCTATTCTTGCAGGAACAGA+TGG 0.510039 4_2:-12256226 Msa0589400:CDS
GGAATAAGAGTAATTAGAAA+AGG 0.510705 4_2:-12256820 Msa0589400:CDS
CCTATTTGTCTCCGAGACCT+TGG 0.512360 4_2:-12260401 Msa0589400:CDS
CTAGCTATAGAGATTATAGT+TGG 0.518502 4_2:+12260710 None:intergenic
AGGTTAAGAGTGCAAATAGA+GGG 0.520148 4_2:+12256941 None:intergenic
TAAAGGACGAAAGATGGGTA+TGG 0.520755 4_2:+12260777 None:intergenic
AGGTGACTTAGTGATTTGTC+CGG 0.526292 4_2:-12256572 Msa0589400:CDS
GGTACGTGAAATATATGAAA+GGG 0.527101 4_2:+12260422 None:intergenic
AAATTTCCTCCATTTGTCAT+GGG 0.527115 4_2:-12260622 Msa0589400:exon
GAGACGTGGAGATTGTTTCT+CGG 0.527308 4_2:-12260333 Msa0589400:CDS
AAGGTTAAGAGTGCAAATAG+AGG 0.530421 4_2:+12256940 None:intergenic
TGACTTCATGTCTATTTGCA+AGG 0.539001 4_2:-12260005 Msa0589400:intron
GCACTAAACCTCAATAGAAA+CGG 0.544972 4_2:+12256529 None:intergenic
ATATTCAAAGGGTTCTTGGA+GGG 0.546066 4_2:-12256294 Msa0589400:CDS
ATGCACTTCGCGACACGAGA+AGG 0.548044 4_2:+12260515 None:intergenic
TGTTGGTGAACACAAGAAAG+AGG 0.548662 4_2:-12260095 Msa0589400:CDS
TGGGAGTAGATAAGGTGCTA+GGG 0.549005 4_2:-12260180 Msa0589400:CDS
GTAGTTGATTTATGTTGTTG+AGG 0.551188 4_2:-12255854 Msa0589400:three_prime_UTR
AGTGGGTTTGTTAAGGAACC+AGG 0.551989 4_2:-12260124 Msa0589400:CDS
AATGGCTCAACCATCAACCT+TGG 0.553342 4_2:+12260217 None:intergenic
TGTCTCTGGATGCACGTCCT+CGG 0.553696 4_2:+12260288 None:intergenic
ATGTACCAATTTAACAAGGA+AGG 0.557734 4_2:-12256257 Msa0589400:CDS
GTACTACATTTAGAAATTGG+TGG 0.557810 4_2:+12260583 None:intergenic
TATATTCAAAGGGTTCTTGG+AGG 0.558009 4_2:-12256295 Msa0589400:CDS
AAAAGCCGTTGCGCTTTCAA+GGG 0.561930 4_2:-12256638 Msa0589400:CDS
TGGAATTGACTTGCAGTGGA+GGG 0.564415 4_2:-12256342 Msa0589400:CDS
AGGTACGTGAAATATATGAA+AGG 0.567264 4_2:+12260421 None:intergenic
TTGGAATTGACTTGCAGTGG+AGG 0.574024 4_2:-12256343 Msa0589400:CDS
ATTAATCTTTGTCACATTCG+CGG 0.578687 4_2:-12260368 Msa0589400:CDS
GCCGTCTAAGTCAGATGCCA+CGG 0.578808 4_2:+12260540 None:intergenic
GAAGAAAGATTAAAATTGAA+GGG 0.579270 4_2:-12256188 Msa0589400:exon
GTGATCTCATAAGTTGGCAT+AGG 0.582217 4_2:+12256385 None:intergenic
GGTTAAGAGTGCAAATAGAG+GGG 0.592460 4_2:+12256942 None:intergenic
TGCACTTCGCGACACGAGAA+GGG 0.596300 4_2:+12260516 None:intergenic
AGGACGTGCATCCAGAGACA+TGG 0.604083 4_2:-12260285 Msa0589400:CDS
TCTTTCCCTTGAAAGCGCAA+CGG 0.605263 4_2:+12256633 None:intergenic
ACATTGTCACGGCTAGTCCA+AGG 0.617998 4_2:-12260234 Msa0589400:CDS
AAGGCTCCCATGACAAATGG+AGG 0.625438 4_2:+12260616 None:intergenic
TCGTCGCAAAATATCAAAGA+CGG 0.625835 4_2:-12256065 Msa0589400:three_prime_UTR
GTTGCCTAGGTTCTATGCCG+AGG 0.628644 4_2:-12260305 Msa0589400:CDS
GATGTAACAATGTGGCATAT+GGG 0.632032 4_2:-12255725 Msa0589400:three_prime_UTR
GCTTCGTATTAATCGCGACA+GGG 0.633339 4_2:+12256476 None:intergenic
CCACTGCAAGTCAATTCCAA+AGG 0.642771 4_2:+12256346 None:intergenic
ACCGTGGCATCTGACTTAGA+CGG 0.652681 4_2:-12260541 Msa0589400:CDS
GACTTAGTGATTTGTCCGGA+AGG 0.655073 4_2:-12256568 Msa0589400:CDS
ACGTCCTCGGCATAGAACCT+AGG 0.656526 4_2:+12260301 None:intergenic
TTGAATGTACCAATTTAACA+AGG 0.660163 4_2:-12256261 Msa0589400:CDS
AATTGGTGGGAAAAGTGGAA+AGG 0.662471 4_2:+12260597 None:intergenic
TAATCTTTGTCACATTCGCG+GGG 0.673980 4_2:-12260366 Msa0589400:CDS
AGATAGATCAAACCAGACCG+TGG 0.682527 4_2:-12260557 Msa0589400:CDS
AGGAAGGATACATGGTACCA+AGG 0.684832 4_2:-12257044 Msa0589400:CDS
CGGGAAACGATACATTGTCA+CGG 0.691995 4_2:-12260245 Msa0589400:CDS
CGTGCATCCAGAGACATGGA+AGG 0.693169 4_2:-12260281 Msa0589400:CDS
GGGGCTAAGGATAAGAGACG+TGG 0.717767 4_2:-12260347 Msa0589400:CDS
AAGGGAAAGAGATAGAGATG+CGG 0.731861 4_2:-12256620 Msa0589400:CDS
CTGATTGAGATGTAACAATG+TGG 0.770996 4_2:-12255733 Msa0589400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATGTTTTATTAATTAA+TGG - chr4_2:12256657-12256676 Msa0589400:CDS 10.0%
!!! CTTTTCAAAAAAAAATATAT+TGG - chr4_2:12256810-12256829 Msa0589400:CDS 10.0%
!! TGATGATTATTAAATTATAT+CGG - chr4_2:12257866-12257885 Msa0589400:intron 10.0%
!! AAAAATAAAAATACATAGTT+AGG + chr4_2:12258921-12258940 None:intergenic 10.0%
!! AACTAACACATTATATAATT+TGG + chr4_2:12256532-12256551 None:intergenic 15.0%
!!! TTATATAATGTGTTAGTTTA+TGG - chr4_2:12256534-12256553 Msa0589400:CDS 15.0%
!! TAATAGACTATAATTTAGAA+TGG - chr4_2:12256735-12256754 Msa0589400:CDS 15.0%
!! CAAAAACATGATAAATAAAT+AGG + chr4_2:12256889-12256908 None:intergenic 15.0%
!! ATAACAAAAATATACATGAA+TGG + chr4_2:12256915-12256934 None:intergenic 15.0%
!! TTTGATTAATCAAAATCTAA+TGG - chr4_2:12256996-12257015 Msa0589400:CDS 15.0%
!!! TTTTTTTTTCAATCTAACTT+AGG - chr4_2:12257418-12257437 Msa0589400:intron 15.0%
!! TATAAAACATCAATAAAGTT+AGG + chr4_2:12258118-12258137 None:intergenic 15.0%
!!! TTTTTTTTCTTCTGTATTAT+TGG + chr4_2:12258279-12258298 None:intergenic 15.0%
!!! TTTTCATACATTTTTTTATG+TGG + chr4_2:12258600-12258619 None:intergenic 15.0%
!!! TTTTCATCTGTAATTTAATT+TGG + chr4_2:12260332-12260351 None:intergenic 15.0%
!! TTAAAAAAATGAATTATCGA+CGG + chr4_2:12260439-12260458 None:intergenic 15.0%
!!! GTACATAATATGTTATTTTT+AGG + chr4_2:12260542-12260561 None:intergenic 15.0%
!! TTTGTACTACATTTAGAAAT+TGG + chr4_2:12255861-12255880 None:intergenic 20.0%
!! TCACAACTAAAAAATTATAC+TGG + chr4_2:12257208-12257227 None:intergenic 20.0%
!!! TTTTTAGTTGTGACAAATTA+AGG - chr4_2:12257215-12257234 Msa0589400:intron 20.0%
!!! TTTTAGTTGTGACAAATTAA+GGG - chr4_2:12257216-12257235 Msa0589400:intron 20.0%
!!! AAGTTTTAGGTGAAAAAAAT+AGG + chr4_2:12257479-12257498 None:intergenic 20.0%
!!! TTTTTGTAGATGTGATATTA+GGG - chr4_2:12257541-12257560 Msa0589400:intron 20.0%
!! GTAAATTGAGAAATCAAAAT+AGG + chr4_2:12257598-12257617 None:intergenic 20.0%
!!! TCTTTTTCAAATTTCTGTTT+TGG - chr4_2:12257774-12257793 Msa0589400:intron 20.0%
!! TAAAGATAGAAAAAGACATA+TGG + chr4_2:12258033-12258052 None:intergenic 20.0%
!!! TAACTTTAGAGAACAAAAAA+TGG + chr4_2:12258091-12258110 None:intergenic 20.0%
!!! ACTGATAAAATTTTGAGAAA+AGG - chr4_2:12258201-12258220 Msa0589400:intron 20.0%
!! AAGAAAAAAAAATCCCTAAT+TGG - chr4_2:12258288-12258307 Msa0589400:intron 20.0%
!! CAATTATAAAATCAGTTCTA+GGG - chr4_2:12258319-12258338 Msa0589400:intron 20.0%
!! AATAAAATTTAGGAAGTCTA+GGG + chr4_2:12258666-12258685 None:intergenic 20.0%
!! AAATAAAATTTAGGAAGTCT+AGG + chr4_2:12258667-12258686 None:intergenic 20.0%
!! AACAAGGACAAATAAAATTT+AGG + chr4_2:12258676-12258695 None:intergenic 20.0%
!! AGAAAAGAAAAAAAAGAACA+AGG + chr4_2:12258692-12258711 None:intergenic 20.0%
!! TTATGATAACTTTATGAGTT+TGG + chr4_2:12258889-12258908 None:intergenic 20.0%
!!! CTGTATTTTATCTTTTGTTA+TGG - chr4_2:12259302-12259321 Msa0589400:intron 20.0%
!! AGAAATAATTAGACAATGTT+TGG + chr4_2:12259366-12259385 None:intergenic 20.0%
!! AATCATACTTTCAATCTTAA+GGG - chr4_2:12259539-12259558 Msa0589400:intron 20.0%
!! TGGTACAATTATAAATTACT+TGG - chr4_2:12259597-12259616 Msa0589400:intron 20.0%
!!! TTTTATAGGCGAAATTATTT+CGG + chr4_2:12259784-12259803 None:intergenic 20.0%
!! AAGTTGCAAATTATATTCAA+AGG - chr4_2:12260132-12260151 Msa0589400:CDS 20.0%
!! GAAGAAAGATTAAAATTGAA+GGG - chr4_2:12260250-12260269 Msa0589400:CDS 20.0%
!!! AACTTTGAAATTAAACATCA+TGG + chr4_2:12260475-12260494 None:intergenic 20.0%
!!! AATGGAGGAAATTTTTTTGA+AGG + chr4_2:12255810-12255829 None:intergenic 25.0%
! TACTACATTTAGAAATTGGT+GGG + chr4_2:12255857-12255876 None:intergenic 25.0%
!!! CCATTTGTTAAGACATTTTT+GGG - chr4_2:12256239-12256258 Msa0589400:CDS 25.0%
!! AATTGATGGTTACAAAAACA+GGG - chr4_2:12256285-12256304 Msa0589400:CDS 25.0%
!! ATTTGTGAATGTCGATTAAA+AGG + chr4_2:12256588-12256607 None:intergenic 25.0%
!! AGACTATAATTTAGAATGGA+TGG - chr4_2:12256739-12256758 Msa0589400:CDS 25.0%
! ATTAAATTGACTACAGAAAC+TGG + chr4_2:12256836-12256855 None:intergenic 25.0%
! CAGATAGATATGGATATATT+AGG + chr4_2:12256866-12256885 None:intergenic 25.0%
! AATAAATAGGCAGATAGATA+TGG + chr4_2:12256876-12256895 None:intergenic 25.0%
!! AATTATACTGGAGGATATTT+TGG + chr4_2:12257196-12257215 None:intergenic 25.0%
! CAACTAAAAAATTATACTGG+AGG + chr4_2:12257205-12257224 None:intergenic 25.0%
! TTTAGTTGTGACAAATTAAG+GGG - chr4_2:12257217-12257236 Msa0589400:intron 25.0%
!! AGTCATATTTCACAAGTTTT+AGG + chr4_2:12257492-12257511 None:intergenic 25.0%
!! GTTTTTGTAGATGTGATATT+AGG - chr4_2:12257540-12257559 Msa0589400:intron 25.0%
! ATGTGATATTAGGGATTAAA+AGG - chr4_2:12257550-12257569 Msa0589400:intron 25.0%
! TGTGATATTAGGGATTAAAA+GGG - chr4_2:12257551-12257570 Msa0589400:intron 25.0%
! ATTGAGAAATCAAAATAGGA+AGG + chr4_2:12257594-12257613 None:intergenic 25.0%
!!! TTTCAAATTTCTGTTTTGGA+TGG - chr4_2:12257778-12257797 Msa0589400:intron 25.0%
!!! TTCAAATTTCTGTTTTGGAT+GGG - chr4_2:12257779-12257798 Msa0589400:intron 25.0%
! AGACATAAATTTAAGGAAAG+AGG + chr4_2:12257956-12257975 None:intergenic 25.0%
! CGAAAACAGACATAAATTTA+AGG + chr4_2:12257963-12257982 None:intergenic 25.0%
!! GTTTTCGTGTATAATTTTTC+CGG - chr4_2:12257976-12257995 Msa0589400:intron 25.0%
! AATTGGAAGATATCCAATTA+GGG + chr4_2:12258304-12258323 None:intergenic 25.0%
! TAATTGGAAGATATCCAATT+AGG + chr4_2:12258305-12258324 None:intergenic 25.0%
!!! CCTAGAACTGATTTTATAAT+TGG + chr4_2:12258321-12258340 None:intergenic 25.0%
! CCAATTATAAAATCAGTTCT+AGG - chr4_2:12258318-12258337 Msa0589400:intron 25.0%
!!! ATTGACTAGTATTTTAGCTT+GGG + chr4_2:12258350-12258369 None:intergenic 25.0%
!!! AATTGACTAGTATTTTAGCT+TGG + chr4_2:12258351-12258370 None:intergenic 25.0%
! GGATATAGAGATGTTAAAAT+GGG + chr4_2:12258400-12258419 None:intergenic 25.0%
! TGGATATAGAGATGTTAAAA+TGG + chr4_2:12258401-12258420 None:intergenic 25.0%
! ATAAAATTTAGGAAGTCTAG+GGG + chr4_2:12258665-12258684 None:intergenic 25.0%
!! CATTTTATCATACTGTCATA+TGG + chr4_2:12258835-12258854 None:intergenic 25.0%
! AAATTATCAGTTCATAGACT+AGG + chr4_2:12258963-12258982 None:intergenic 25.0%
!!! GTGAAAGTATTTTGAACAAA+TGG - chr4_2:12259191-12259210 Msa0589400:intron 25.0%
! CATATTCATAAGTTGTATTC+AGG - chr4_2:12259227-12259246 Msa0589400:intron 25.0%
!! CTAATTATTTCTCACATTAC+AGG - chr4_2:12259374-12259393 Msa0589400:intron 25.0%
! TACCCTCATGAAAAATAATT+GGG + chr4_2:12259458-12259477 None:intergenic 25.0%
!! ATTGAAAGTATGATTCCAAT+TGG + chr4_2:12259534-12259553 None:intergenic 25.0%
! GAATCATACTTTCAATCTTA+AGG - chr4_2:12259538-12259557 Msa0589400:intron 25.0%
!!! AAGCAATTTTTTCAGGTAAA+GGG + chr4_2:12259578-12259597 None:intergenic 25.0%
! GGAATAAGAGTAATTAGAAA+AGG - chr4_2:12259618-12259637 Msa0589400:intron 25.0%
! ATAAAGAAATTGCTTGAAGA+AGG - chr4_2:12259846-12259865 Msa0589400:intron 25.0%
!!! AAGTTTGTTTTATGGAACAT+CGG - chr4_2:12259986-12260005 Msa0589400:intron 25.0%
! TTGAATGTACCAATTTAACA+AGG - chr4_2:12260177-12260196 Msa0589400:CDS 25.0%
! CGAAGAAAGATTAAAATTGA+AGG - chr4_2:12260249-12260268 Msa0589400:CDS 25.0%
!! TAGTTGATTTATGTTGTTGA+GGG - chr4_2:12260585-12260604 Msa0589400:CDS 25.0%
! AATGAAGTGTATTACAGTTA+TGG - chr4_2:12260671-12260690 Msa0589400:five_prime_UTR 25.0%
! CAAACTTATCTGCAAATTAA+TGG + chr4_2:12260783-12260802 None:intergenic 25.0%
!!! CATTAATTTGCAGATAAGTT+TGG - chr4_2:12260781-12260800 Msa0589400:five_prime_UTR 25.0%
!! GTTTTTAAAGGACGAAAGAT+GGG + chr4_2:12255669-12255688 None:intergenic 30.0%
CTAGCTATAGAGATTATAGT+TGG + chr4_2:12255731-12255750 None:intergenic 30.0%
! TTTGCTAAGATGTTTTGTGA+GGG + chr4_2:12255773-12255792 None:intergenic 30.0%
AAAATTTCCTCCATTTGTCA+TGG - chr4_2:12255815-12255834 Msa0589400:three_prime_UTR 30.0%
AAATTTCCTCCATTTGTCAT+GGG - chr4_2:12255816-12255835 Msa0589400:three_prime_UTR 30.0%
GTACTACATTTAGAAATTGG+TGG + chr4_2:12255858-12255877 None:intergenic 30.0%
GAAATATATGAAAGGGACTA+AGG + chr4_2:12256012-12256031 None:intergenic 30.0%
GGTACGTGAAATATATGAAA+GGG + chr4_2:12256019-12256038 None:intergenic 30.0%
AGGTACGTGAAATATATGAA+AGG + chr4_2:12256020-12256039 None:intergenic 30.0%
!!! GATTAATGTTTTGATTGCCA+AGG + chr4_2:12256057-12256076 None:intergenic 30.0%
ATTAATCTTTGTCACATTCG+CGG - chr4_2:12256070-12256089 Msa0589400:three_prime_UTR 30.0%
!! GCCATTTGTTAAGACATTTT+TGG - chr4_2:12256238-12256257 Msa0589400:CDS 30.0%
CCCAAAAATGTCTTAACAAA+TGG + chr4_2:12256242-12256261 None:intergenic 30.0%
! GAATTGATGGTTACAAAAAC+AGG - chr4_2:12256284-12256303 Msa0589400:CDS 30.0%
AGGCAGTTATGAAAGAATTT+GGG - chr4_2:12256363-12256382 Msa0589400:CDS 30.0%
AGTAACAATTTGCCTGATTT+GGG - chr4_2:12256386-12256405 Msa0589400:CDS 30.0%
! ATGGTTATCATGTATCGTTT+TGG - chr4_2:12257015-12257034 Msa0589400:CDS 30.0%
! TGGTTATCATGTATCGTTTT+GGG - chr4_2:12257016-12257035 Msa0589400:CDS 30.0%
TTAGTTGTGACAAATTAAGG+GGG - chr4_2:12257218-12257237 Msa0589400:intron 30.0%
!! ATTAAGGGGGTTTTATATCT+TGG - chr4_2:12257231-12257250 Msa0589400:intron 30.0%
TCTGTTTGAGAGTTTAAAAG+GGG + chr4_2:12257341-12257360 None:intergenic 30.0%
GTCTGTTTGAGAGTTTAAAA+GGG + chr4_2:12257342-12257361 None:intergenic 30.0%
!!! TGACTTTTCTGAAACAATTC+AGG - chr4_2:12257507-12257526 Msa0589400:intron 30.0%
ACCCAACATCAAAAAATTAG+GGG + chr4_2:12257892-12257911 None:intergenic 30.0%
CACCCAACATCAAAAAATTA+GGG + chr4_2:12257893-12257912 None:intergenic 30.0%
TCACCCAACATCAAAAAATT+AGG + chr4_2:12257894-12257913 None:intergenic 30.0%
CATAAATTTAAGGAAAGAGG+AGG + chr4_2:12257953-12257972 None:intergenic 30.0%
! CTATCTTTACTAGCTTGTAT+TGG - chr4_2:12258044-12258063 Msa0589400:intron 30.0%
CAATAAACACGATACTGATA+TGG - chr4_2:12258168-12258187 Msa0589400:intron 30.0%
!! ATTGAGTTGAGTTGGATTAT+AGG - chr4_2:12258368-12258387 Msa0589400:intron 30.0%
!! TTGAGTTGAGTTGGATTATA+GGG - chr4_2:12258369-12258388 Msa0589400:intron 30.0%
!! GAAAGAGTACTACTCATAAT+AGG + chr4_2:12258559-12258578 None:intergenic 30.0%
TTTCTAGATATCACAGATTC+AGG - chr4_2:12258707-12258726 Msa0589400:intron 30.0%
TTCTAGATATCACAGATTCA+GGG - chr4_2:12258708-12258727 Msa0589400:intron 30.0%
ATGAACTGATAATTTCCACA+TGG - chr4_2:12258968-12258987 Msa0589400:intron 30.0%
! GAAAACCTTAACTGTTTTGT+GGG + chr4_2:12259020-12259039 None:intergenic 30.0%
! AGAAAACCTTAACTGTTTTG+TGG + chr4_2:12259021-12259040 None:intergenic 30.0%
! CAAAACAGTTAAGGTTTTCT+AGG - chr4_2:12259021-12259040 Msa0589400:intron 30.0%
! AAGTTGTATTCAGGCTTTTT+AGG - chr4_2:12259236-12259255 Msa0589400:intron 30.0%
! TTATTTCTCACATTACAGGA+AGG - chr4_2:12259378-12259397 Msa0589400:intron 30.0%
!! AAGCCCAATTATTTTTCATG+AGG - chr4_2:12259452-12259471 Msa0589400:intron 30.0%
!! AGCCCAATTATTTTTCATGA+GGG - chr4_2:12259453-12259472 Msa0589400:intron 30.0%
CTACCCTCATGAAAAATAAT+TGG + chr4_2:12259459-12259478 None:intergenic 30.0%
!!! CAAGCAATTTTTTCAGGTAA+AGG + chr4_2:12259579-12259598 None:intergenic 30.0%
CTTTACCTGAAAAAATTGCT+TGG - chr4_2:12259577-12259596 Msa0589400:intron 30.0%
!!! TTGTACCAAGCAATTTTTTC+AGG + chr4_2:12259585-12259604 None:intergenic 30.0%
! TGCTCTTTTTGCAGAATTAA+CGG - chr4_2:12259929-12259948 Msa0589400:intron 30.0%
!! TTTTTGCAGAATTAACGGAT+AGG - chr4_2:12259934-12259953 Msa0589400:intron 30.0%
!!! ACGAAGCAAAGTTTGTTTTA+TGG - chr4_2:12259978-12259997 Msa0589400:intron 30.0%
GGATTCATGAACACAAAATA+AGG + chr4_2:12260035-12260054 None:intergenic 30.0%
AAGAAAGTGATCTCATAAGT+TGG + chr4_2:12260062-12260081 None:intergenic 30.0%
ATGTACCAATTTAACAAGGA+AGG - chr4_2:12260181-12260200 Msa0589400:CDS 30.0%
CTTATCCTTCCTTGTTAAAT+TGG + chr4_2:12260189-12260208 None:intergenic 30.0%
! GTAGTTGATTTATGTTGTTG+AGG - chr4_2:12260584-12260603 Msa0589400:CDS 30.0%
!! GGTTTTTAAAGGACGAAAGA+TGG + chr4_2:12255670-12255689 None:intergenic 35.0%
TTGTGAGGGAAATATGGAAT+TGG + chr4_2:12255759-12255778 None:intergenic 35.0%
! GATGTTTTGTGAGGGAAATA+TGG + chr4_2:12255765-12255784 None:intergenic 35.0%
!! GTTTGCTAAGATGTTTTGTG+AGG + chr4_2:12255774-12255793 None:intergenic 35.0%
TTAGAAATTGGTGGGAAAAG+TGG + chr4_2:12255849-12255868 None:intergenic 35.0%
TTAATCTTTGTCACATTCGC+GGG - chr4_2:12256071-12256090 Msa0589400:three_prime_UTR 35.0%
!! GACATTTTTGGGAGTAGATA+AGG - chr4_2:12256250-12256269 Msa0589400:CDS 35.0%
GAGGCAGTTATGAAAGAATT+TGG - chr4_2:12256362-12256381 Msa0589400:CDS 35.0%
GAGTAACAATTTGCCTGATT+TGG - chr4_2:12256385-12256404 Msa0589400:CDS 35.0%
TGACTTCATGTCTATTTGCA+AGG - chr4_2:12256433-12256452 Msa0589400:CDS 35.0%
!! GAGGATATTTTGGATGGTTT+GGG + chr4_2:12257186-12257205 None:intergenic 35.0%
!! ATACTGGAGGATATTTTGGA+TGG + chr4_2:12257192-12257211 None:intergenic 35.0%
CAAGAAAAGGAAGGATGAAA+TGG + chr4_2:12257308-12257327 None:intergenic 35.0%
GGTCTGTTTGAGAGTTTAAA+AGG + chr4_2:12257343-12257362 None:intergenic 35.0%
GACTCTAGTATGAACACTTA+AGG + chr4_2:12257364-12257383 None:intergenic 35.0%
!!! GCCCCTAATTTTTTGATGTT+GGG - chr4_2:12257888-12257907 Msa0589400:intron 35.0%
! TTCGTGTATAATTTTTCCGG+TGG - chr4_2:12257979-12257998 Msa0589400:intron 35.0%
AATGGACCATGGTTTGAATT+GGG + chr4_2:12258073-12258092 None:intergenic 35.0%
AAATGGACCATGGTTTGAAT+TGG + chr4_2:12258074-12258093 None:intergenic 35.0%
AGAGAACAAAAAATGGACCA+TGG + chr4_2:12258084-12258103 None:intergenic 35.0%
! ATTGGTTTACTCTGTTGTAC+TGG + chr4_2:12258261-12258280 None:intergenic 35.0%
!! ACTAGTCAATTGAGTTGAGT+TGG - chr4_2:12258360-12258379 Msa0589400:intron 35.0%
TCACTATGTTGAGATGTGAT+TGG + chr4_2:12258421-12258440 None:intergenic 35.0%
GGTTGGACATGAGAAATTTA+TGG + chr4_2:12258538-12258557 None:intergenic 35.0%
GAGTACTACTCATAATAGGT+TGG + chr4_2:12258555-12258574 None:intergenic 35.0%
TTTATGTGGTACAAGCTGTA+CGG + chr4_2:12258586-12258605 None:intergenic 35.0%
ACAAGGATTGTGCTTTCTTA+TGG + chr4_2:12258636-12258655 None:intergenic 35.0%
AACTGATAATTTCCACATGG+AGG - chr4_2:12258971-12258990 Msa0589400:intron 35.0%
AAACCACCGATATAACTTCA+TGG - chr4_2:12258994-12259013 Msa0589400:intron 35.0%
! GAAGCTTGTTTCTTGGTAAT+GGG + chr4_2:12259431-12259450 None:intergenic 35.0%
! AGAAGCTTGTTTCTTGGTAA+TGG + chr4_2:12259432-12259451 None:intergenic 35.0%
! AGGTTAAGAGTGCAAATAGA+GGG + chr4_2:12259500-12259519 None:intergenic 35.0%
! AAGGTTAAGAGTGCAAATAG+AGG + chr4_2:12259501-12259520 None:intergenic 35.0%
TTGCACTCTTAACCTTCTTA+TGG - chr4_2:12259505-12259524 Msa0589400:intron 35.0%
!!! ACACCACTTTGACCTTTTTT+GGG + chr4_2:12259660-12259679 None:intergenic 35.0%
!!! AACACCACTTTGACCTTTTT+TGG + chr4_2:12259661-12259680 None:intergenic 35.0%
! CTGGATCTAAAACTGTTCTA+TGG + chr4_2:12259698-12259717 None:intergenic 35.0%
!! GTTTTAGATCCAGTTGTTAC+AGG - chr4_2:12259705-12259724 Msa0589400:intron 35.0%
GCACTAAACCTCAATAGAAA+CGG + chr4_2:12259912-12259931 None:intergenic 35.0%
TTTCTTGAATCAGTTGCCTT+TGG - chr4_2:12260076-12260095 Msa0589400:CDS 35.0%
GATAAGTATGCTATTCTTGC+AGG - chr4_2:12260203-12260222 Msa0589400:CDS 35.0%
TCGTCGCAAAATATCAAAGA+CGG - chr4_2:12260373-12260392 Msa0589400:CDS 35.0%
GAATTATCGACGGAAATTTC+AGG + chr4_2:12260429-12260448 None:intergenic 35.0%
ACATCACAAAGATGCACTAT+AGG + chr4_2:12260619-12260638 None:intergenic 35.0%
AGTGCATCTTTGTGATGTAA+AGG - chr4_2:12260621-12260640 Msa0589400:exon 35.0%
CTGATTGAGATGTAACAATG+TGG - chr4_2:12260705-12260724 Msa0589400:five_prime_UTR 35.0%
AGATGTAACAATGTGGCATA+TGG - chr4_2:12260712-12260731 Msa0589400:five_prime_UTR 35.0%
GATGTAACAATGTGGCATAT+GGG - chr4_2:12260713-12260732 Msa0589400:five_prime_UTR 35.0%
ATGGGATTCTTATGCACAAA+TGG - chr4_2:12260731-12260750 Msa0589400:five_prime_UTR 35.0%
TAAAGGACGAAAGATGGGTA+TGG + chr4_2:12255664-12255683 None:intergenic 40.0%
GTTATGATGAGAGAGAGAGA+GGG + chr4_2:12255699-12255718 None:intergenic 40.0%
TGTTATGATGAGAGAGAGAG+AGG + chr4_2:12255700-12255719 None:intergenic 40.0%
AATTGGTGGGAAAAGTGGAA+AGG + chr4_2:12255844-12255863 None:intergenic 40.0%
!!! TGTTTTGATTGCCAAGGTCT+CGG + chr4_2:12256051-12256070 None:intergenic 40.0%
TAATCTTTGTCACATTCGCG+GGG - chr4_2:12256072-12256091 Msa0589400:three_prime_UTR 40.0%
!! TGGAAGGTGTTCAATTCGTT+CGG - chr4_2:12256173-12256192 Msa0589400:three_prime_UTR 40.0%
TGATGGTTACAAAAACAGGG+AGG - chr4_2:12256288-12256307 Msa0589400:CDS 40.0%
GATGGTTACAAAAACAGGGA+GGG - chr4_2:12256289-12256308 Msa0589400:CDS 40.0%
! TGTTGGTGAACACAAGAAAG+AGG - chr4_2:12256343-12256362 Msa0589400:CDS 40.0%
!! AATTTGCCTGATTTGGGACT+GGG - chr4_2:12256392-12256411 Msa0589400:CDS 40.0%
CTAGATCCTCTTGTTACACA+TGG - chr4_2:12256613-12256632 Msa0589400:CDS 40.0%
CATGTTCCATGTGTAACAAG+AGG + chr4_2:12256622-12256641 None:intergenic 40.0%
!! TTTTGGGAGTAAGCTCTCTT+TGG - chr4_2:12257032-12257051 Msa0589400:CDS 40.0%
TTTGGGAGTAAGCTCTCTTT+GGG - chr4_2:12257033-12257052 Msa0589400:CDS 40.0%
! TTTGGATGGTTTGGGAGATT+CGG + chr4_2:12257178-12257197 None:intergenic 40.0%
!! GGAGGATATTTTGGATGGTT+TGG + chr4_2:12257187-12257206 None:intergenic 40.0%
!! AAGGGGGTTTTATATCTTGG+AGG - chr4_2:12257234-12257253 Msa0589400:intron 40.0%
TAGATGATTTCGAGAGCAGT+GGG + chr4_2:12257279-12257298 None:intergenic 40.0%
ATAGATGATTTCGAGAGCAG+TGG + chr4_2:12257280-12257299 None:intergenic 40.0%
GAGAGCTTTCAAGAAAAGGA+AGG + chr4_2:12257317-12257336 None:intergenic 40.0%
ACGTGAGCACATACACATAT+GGG + chr4_2:12257723-12257742 None:intergenic 40.0%
!!! GGCCCCTAATTTTTTGATGT+TGG - chr4_2:12257887-12257906 Msa0589400:intron 40.0%
AAGACATATGGAACAGACCA+GGG + chr4_2:12258021-12258040 None:intergenic 40.0%
AAAGACATATGGAACAGACC+AGG + chr4_2:12258022-12258041 None:intergenic 40.0%
ATGGACCATGGTTTGAATTG+GGG + chr4_2:12258072-12258091 None:intergenic 40.0%
!! TGTGTGTGTCACTTCTTCAT+AGG + chr4_2:12258146-12258165 None:intergenic 40.0%
!! GGCACGATACTTTTGATTGA+AGG + chr4_2:12258240-12258259 None:intergenic 40.0%
AAGTCTAGGGGAATATCACA+AGG + chr4_2:12258653-12258672 None:intergenic 40.0%
! CAGGGACTTTTTGTTGAGTA+AGG - chr4_2:12258726-12258745 Msa0589400:intron 40.0%
TGTGGGCCATGAAGTTATAT+CGG + chr4_2:12259003-12259022 None:intergenic 40.0%
CACATTACAGGAAGGATACA+TGG - chr4_2:12259386-12259405 Msa0589400:intron 40.0%
!! TCTTGGTAATGGGTCACATT+TGG + chr4_2:12259421-12259440 None:intergenic 40.0%
!!! CAAATAGAGGGGTTGGTTTT+TGG + chr4_2:12259488-12259507 None:intergenic 40.0%
! GGTTAAGAGTGCAAATAGAG+GGG + chr4_2:12259499-12259518 None:intergenic 40.0%
ACCTTCTTATGGATGCCAAT+TGG - chr4_2:12259516-12259535 Msa0589400:intron 40.0%
TCCAATTGGCATCCATAAGA+AGG + chr4_2:12259520-12259539 None:intergenic 40.0%
AATGCAACTCCTGTAACAAC+TGG + chr4_2:12259717-12259736 None:intergenic 40.0%
GTTGTTACAGGAGTTGCATT+AGG - chr4_2:12259717-12259736 Msa0589400:intron 40.0%
AAGGGAAAGAGATAGAGATG+CGG - chr4_2:12259818-12259837 Msa0589400:intron 40.0%
! AGGTGACTTAGTGATTTGTC+CGG - chr4_2:12259866-12259885 Msa0589400:intron 40.0%
GTAGAGAACCGTTTCTATTG+AGG - chr4_2:12259901-12259920 Msa0589400:intron 40.0%
! GTGATCTCATAAGTTGGCAT+AGG + chr4_2:12260056-12260075 None:intergenic 40.0%
TCAGGCGAAAACGATAAAAC+TGG + chr4_2:12260411-12260430 None:intergenic 40.0%
! GAGGGTGAAGGGGTTTTTAA+AGG + chr4_2:12255681-12255700 None:intergenic 45.0%
AGATAGATCAAACCAGACCG+TGG - chr4_2:12255881-12255900 Msa0589400:three_prime_UTR 45.0%
! GAGACGTGGAGATTGTTTCT+CGG - chr4_2:12256105-12256124 Msa0589400:three_prime_UTR 45.0%
TTGAACACCTTCCATGTCTC+TGG + chr4_2:12256167-12256186 None:intergenic 45.0%
!! GGAAGGTGTTCAATTCGTTC+GGG - chr4_2:12256174-12256193 Msa0589400:three_prime_UTR 45.0%
CGGGAAACGATACATTGTCA+CGG - chr4_2:12256193-12256212 Msa0589400:exon 45.0%
AATGGCTCAACCATCAACCT+TGG + chr4_2:12256224-12256243 None:intergenic 45.0%
! TTGGGAGTAGATAAGGTGCT+AGG - chr4_2:12256257-12256276 Msa0589400:CDS 45.0%
! TGGGAGTAGATAAGGTGCTA+GGG - chr4_2:12256258-12256277 Msa0589400:CDS 45.0%
!! AGTGGGTTTGTTAAGGAACC+AGG - chr4_2:12256314-12256333 Msa0589400:CDS 45.0%
AAGGAACCAGGAGTTCTTGT+TGG - chr4_2:12256326-12256345 Msa0589400:CDS 45.0%
TGTTCACCAACAAGAACTCC+TGG + chr4_2:12256335-12256354 None:intergenic 45.0%
!! CAATTTGCCTGATTTGGGAC+TGG - chr4_2:12256391-12256410 Msa0589400:CDS 45.0%
GAAAGGAAGGGGAGAACTTT+GGG - chr4_2:12257067-12257086 Msa0589400:intron 45.0%
AAAGGAAGGGGAGAACTTTG+GGG - chr4_2:12257068-12257087 Msa0589400:intron 45.0%
!! TTCGAGAGCAGTGGGTTTTT+GGG + chr4_2:12257271-12257290 None:intergenic 45.0%
!! TTTCGAGAGCAGTGGGTTTT+TGG + chr4_2:12257272-12257291 None:intergenic 45.0%
GGGAGAGAGCTTTCAAGAAA+AGG + chr4_2:12257321-12257340 None:intergenic 45.0%
CACGTGAGCACATACACATA+TGG + chr4_2:12257724-12257743 None:intergenic 45.0%
AGACATATGGAACAGACCAG+GGG + chr4_2:12258020-12258039 None:intergenic 45.0%
TGGACCATGGTTTGAATTGG+GGG + chr4_2:12258071-12258090 None:intergenic 45.0%
!! GTGTGTCACTTCTTCATAGG+TGG + chr4_2:12258143-12258162 None:intergenic 45.0%
CATGGCCCACAAAACAGTTA+AGG - chr4_2:12259012-12259031 Msa0589400:intron 45.0%
AGGAAGGATACATGGTACCA+AGG - chr4_2:12259394-12259413 Msa0589400:intron 45.0%
AATGGGTCACATTTGGTCCT+TGG + chr4_2:12259414-12259433 None:intergenic 45.0%
! GGGCTTAGAAGCTTGTTTCT+TGG + chr4_2:12259438-12259457 None:intergenic 45.0%
! AAGAGTGCAAATAGAGGGGT+TGG + chr4_2:12259495-12259514 None:intergenic 45.0%
!!! CTTTGACCTTTTTTGGGTGG+TGG + chr4_2:12259654-12259673 None:intergenic 45.0%
!!! CCACTTTGACCTTTTTTGGG+TGG + chr4_2:12259657-12259676 None:intergenic 45.0%
CCACCCAAAAAAGGTCAAAG+TGG - chr4_2:12259654-12259673 Msa0589400:intron 45.0%
!! GAAAGCGCAACGGCTTTTAT+AGG + chr4_2:12259798-12259817 None:intergenic 45.0%
TAAAAGCCGTTGCGCTTTCA+AGG - chr4_2:12259799-12259818 Msa0589400:intron 45.0%
AAAAGCCGTTGCGCTTTCAA+GGG - chr4_2:12259800-12259819 Msa0589400:intron 45.0%
! TCTTTCCCTTGAAAGCGCAA+CGG + chr4_2:12259808-12259827 None:intergenic 45.0%
! GACTTAGTGATTTGTCCGGA+AGG - chr4_2:12259870-12259889 Msa0589400:intron 45.0%
TCTCTACATGTCGTTCCTTC+CGG + chr4_2:12259888-12259907 None:intergenic 45.0%
GCTTCGTATTAATCGCGACA+GGG + chr4_2:12259965-12259984 None:intergenic 45.0%
TGCTTCGTATTAATCGCGAC+AGG + chr4_2:12259966-12259985 None:intergenic 45.0%
!!! TTTTATGGAACATCGGCTCG+CGG - chr4_2:12259993-12260012 Msa0589400:intron 45.0%
CCACTGCAAGTCAATTCCAA+AGG + chr4_2:12260095-12260114 None:intergenic 45.0%
!! CCTTTGGAATTGACTTGCAG+TGG - chr4_2:12260092-12260111 Msa0589400:CDS 45.0%
!! TTGGAATTGACTTGCAGTGG+AGG - chr4_2:12260095-12260114 Msa0589400:CDS 45.0%
!! TGGAATTGACTTGCAGTGGA+GGG - chr4_2:12260096-12260115 Msa0589400:CDS 45.0%
GCTATTCTTGCAGGAACAGA+TGG - chr4_2:12260212-12260231 Msa0589400:CDS 45.0%
!! ATAAAATTTAATTACATTTA+TGG - chr4_2:12258786-12258805 Msa0589400:intron 5.0%
TGAGAGAGAGAGAGGGTGAA+GGG + chr4_2:12255692-12255711 None:intergenic 50.0%
ATGAGAGAGAGAGAGGGTGA+AGG + chr4_2:12255693-12255712 None:intergenic 50.0%
AAGGCTCCCATGACAAATGG+AGG + chr4_2:12255825-12255844 None:intergenic 50.0%
GGAAAGGCTCCCATGACAAA+TGG + chr4_2:12255828-12255847 None:intergenic 50.0%
ACCGTGGCATCTGACTTAGA+CGG - chr4_2:12255897-12255916 Msa0589400:three_prime_UTR 50.0%
AGTGCGACGAGCATGTAGTA+TGG + chr4_2:12255951-12255970 None:intergenic 50.0%
CCAAGGTCTCGGAGACAAAT+AGG + chr4_2:12256040-12256059 None:intergenic 50.0%
CCTATTTGTCTCCGAGACCT+TGG - chr4_2:12256037-12256056 Msa0589400:three_prime_UTR 50.0%
TTTCTCGGTCAGTGTTGCCT+AGG - chr4_2:12256120-12256139 Msa0589400:three_prime_UTR 50.0%
! ACATTGTCACGGCTAGTCCA+AGG - chr4_2:12256204-12256223 Msa0589400:CDS 50.0%
GGTGCTAGGGACTGAATTGA+TGG - chr4_2:12256271-12256290 Msa0589400:CDS 50.0%
ACAAAAACAGGGAGGGCAAG+TGG - chr4_2:12256296-12256315 Msa0589400:CDS 50.0%
CAAAAACAGGGAGGGCAAGT+GGG - chr4_2:12256297-12256316 Msa0589400:CDS 50.0%
!! GAGGGCAAGTGGGTTTGTTA+AGG - chr4_2:12256307-12256326 Msa0589400:CDS 50.0%
GGAAAGGAAGGGGAGAACTT+TGG - chr4_2:12257066-12257085 Msa0589400:intron 50.0%
!! TCGAGAGCAGTGGGTTTTTG+GGG + chr4_2:12257270-12257289 None:intergenic 50.0%
!!! GAGCAGTTTTGTTAGGCCAC+CGG + chr4_2:12257998-12258017 None:intergenic 50.0%
!!! ACCAGGGGAGCAGTTTTGTT+AGG + chr4_2:12258005-12258024 None:intergenic 50.0%
TGGTCCCCCAATTCAAACCA+TGG - chr4_2:12258064-12258083 Msa0589400:intron 50.0%
TATCGGTGGTTTCCTCCATG+TGG + chr4_2:12258986-12259005 None:intergenic 50.0%
GGGCCATGAAGTTATATCGG+TGG + chr4_2:12259000-12259019 None:intergenic 50.0%
!!! TGACCTTTTTTGGGTGGTGG+TGG + chr4_2:12259651-12259670 None:intergenic 50.0%
GAGAGAGAGAGAGGGTGAAG+GGG + chr4_2:12255691-12255710 None:intergenic 55.0%
CTAAGTCAGATGCCACGGTC+TGG + chr4_2:12255896-12255915 None:intergenic 55.0%
GCCGTCTAAGTCAGATGCCA+CGG + chr4_2:12255901-12255920 None:intergenic 55.0%
TGCACTTCGCGACACGAGAA+GGG + chr4_2:12255925-12255944 None:intergenic 55.0%
ATGCACTTCGCGACACGAGA+AGG + chr4_2:12255926-12255945 None:intergenic 55.0%
ATGCTCGTCGCACTTGAAGC+TGG - chr4_2:12255957-12255976 Msa0589400:three_prime_UTR 55.0%
TTGTCACATTCGCGGGGCTA+AGG - chr4_2:12256078-12256097 Msa0589400:three_prime_UTR 55.0%
GGGGCTAAGGATAAGAGACG+TGG - chr4_2:12256091-12256110 Msa0589400:three_prime_UTR 55.0%
GTTGCCTAGGTTCTATGCCG+AGG - chr4_2:12256133-12256152 Msa0589400:three_prime_UTR 55.0%
ACGTCCTCGGCATAGAACCT+AGG + chr4_2:12256140-12256159 None:intergenic 55.0%
TGTCTCTGGATGCACGTCCT+CGG + chr4_2:12256153-12256172 None:intergenic 55.0%
AGGACGTGCATCCAGAGACA+TGG - chr4_2:12256153-12256172 Msa0589400:three_prime_UTR 55.0%
CGTGCATCCAGAGACATGGA+AGG - chr4_2:12256157-12256176 Msa0589400:three_prime_UTR 55.0%
! CACGGCTAGTCCAAGGTTGA+TGG - chr4_2:12256211-12256230 Msa0589400:CDS 55.0%
CTGTCTCCCAGTCCCAAATC+AGG + chr4_2:12256401-12256420 None:intergenic 55.0%
! AGCTCTCTTTGGGAGTCTCG+AGG - chr4_2:12257043-12257062 Msa0589400:CDS 55.0%
! GCTCTCTTTGGGAGTCTCGA+GGG - chr4_2:12257044-12257063 Msa0589400:CDS 55.0%
! CTCTCTTTGGGAGTCTCGAG+GGG - chr4_2:12257045-12257064 Msa0589400:CDS 55.0%
TTTGGGAGTCTCGAGGGGAA+AGG - chr4_2:12257050-12257069 Msa0589400:intron 55.0%
GAGTCTCGAGGGGAAAGGAA+GGG - chr4_2:12257055-12257074 Msa0589400:intron 55.0%
AGTCTCGAGGGGAAAGGAAG+GGG - chr4_2:12257056-12257075 Msa0589400:intron 55.0%
!! GAGAGCAGTGGGTTTTTGGG+GGG + chr4_2:12257268-12257287 None:intergenic 55.0%
!! CGAGAGCAGTGGGTTTTTGG+GGG + chr4_2:12257269-12257288 None:intergenic 55.0%
GCCTAACAAAACTGCTCCCC+TGG - chr4_2:12258001-12258020 Msa0589400:intron 55.0%
GTGGTACAAGCTGTACGGCT+TGG + chr4_2:12258581-12258600 None:intergenic 55.0%
!!! CCTTTTTTGGGTGGTGGTGG+AGG + chr4_2:12259648-12259667 None:intergenic 55.0%
CCTCCACCACCACCCAAAAA+AGG - chr4_2:12259645-12259664 Msa0589400:intron 55.0%
GGCTCGCGGACACAAATTGT+TGG - chr4_2:12260007-12260026 Msa0589400:CDS 55.0%
GGAGTCTCGAGGGGAAAGGA+AGG - chr4_2:12257054-12257073 Msa0589400:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 12255656 12260804 12255656 ID=Msa0589400;Name=Msa0589400
chr4_2 mRNA 12255656 12260804 12255656 ID=Msa0589400-mRNA-1;Parent=Msa0589400;Name=Msa0589400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=178|1|1|1|1|1|2|542|495
chr4_2 exon 12255656 12257064 12255656 ID=Msa0589400-mRNA-1:exon:3567;Parent=Msa0589400-mRNA-1
chr4_2 exon 12260006 12260804 12260006 ID=Msa0589400-mRNA-1:exon:3566;Parent=Msa0589400-mRNA-1
chr4_2 five_prime_UTR 12260627 12260804 12260627 ID=Msa0589400-mRNA-1:five_prime_utr;Parent=Msa0589400-mRNA-1
chr4_2 CDS 12260006 12260626 12260006 ID=Msa0589400-mRNA-1:cds;Parent=Msa0589400-mRNA-1
chr4_2 CDS 12256198 12257064 12256198 ID=Msa0589400-mRNA-1:cds;Parent=Msa0589400-mRNA-1
chr4_2 three_prime_UTR 12255656 12256197 12255656 ID=Msa0589400-mRNA-1:three_prime_utr;Parent=Msa0589400-mRNA-1
Gene Sequence

>Msa0589400

ATGGGAGCCTTTCCACTTTTCCCACCAATTTCTAAATGTAGTACAAAAGATAGATCAAACCAGACCGTGGCATCTGACTTAGACGGCACCCTTCTCGTGTCGCGAAGTGCATTTCCATACTACATGCTCGTCGCACTTGAAGCTGGAAGCATTCTAAGAGCTTTAATTCTCTTATCCTTAGTCCCTTTCATATATTTCACGTACCTATTTGTCTCCGAGACCTTGGCAATCAAAACATTAATCTTTGTCACATTCGCGGGGCTAAGGATAAGAGACGTGGAGATTGTTTCTCGGTCAGTGTTGCCTAGGTTCTATGCCGAGGACGTGCATCCAGAGACATGGAAGGTGTTCAATTCGTTCGGGAAACGATACATTGTCACGGCTAGTCCAAGGTTGATGGTTGAGCCATTTGTTAAGACATTTTTGGGAGTAGATAAGGTGCTAGGGACTGAATTGATGGTTACAAAAACAGGGAGGGCAAGTGGGTTTGTTAAGGAACCAGGAGTTCTTGTTGGTGAACACAAGAAAGAGGCAGTTATGAAAGAATTTGGGAGTAACAATTTGCCTGATTTGGGACTGGGAGACAGTGTAACTGACTCTGACTTCATGTCTATTTGCAAGGAAGGATACATGGTACCAAGGACCAAATGTGACCCATTACCAAGAAACAAGCTTCTAAGCCCAATTATTTTTCATGAGGGTAGATTAGTCCAAAAACCAACCCCTCTATTTGCACTCTTAACCTTCTTATGGATGCCAATTGGAATCATACTTTCAATCTTAAGGGTGTATCTCAACATCCCTTTACCTGAAAAAATTGCTTGGTACAATTATAAATTACTTGGAATAAGAGTAATTAGAAAAGGTACACCTCCACCACCACCCAAAAAAGGTCAAAGTGGTGTTCTATTTGTTTGCAACCATAGAACAGTTTTAGATCCAGTTGTTACAGGAGTTGCATTAGGAAGAAAAATAAGTTGTGTAACTTATAGTATAAGTAAATTCACCGAAATAATTTCGCCTATAAAAGCCGTTGCGCTTTCAAGGGAAAGAGATAGAGATGCGGCAAATATAAAGAAATTGCTTGAAGAAGGTGACTTAGTGATTTGTCCGGAAGGAACGACATGTAGAGAACCGTTTCTATTGAGGTTTAGTGCTCTTTTTGCAGAATTAACGGATAGGATTGTCCCTGTCGCGATTAATACGAAGCAAAGTTTGTTTTATGGAACATCGGCTCGCGGACACAAATTGTTGGATCCTTATTTTGTGTTCATGAATCCTATGCCAACTTATGAGATCACTTTCTTGAATCAGTTGCCTTTGGAATTGACTTGCAGTGGAGGGAAATCTTCAATTGAAGTTGCAAATTATATTCAAAGGGTTCTTGGAGGGACTCTTGGATTTGAATGTACCAATTTAACAAGGAAGGATAAGTATGCTATTCTTGCAGGAACAGATGGAATTGTTAGATCTACGAAGAAAGATTAA
Protein sequence

>Msa0589400

MGAFPLFPPISKCSTKDRSNQTVASDLDGTLLVSRSAFPYYMLVALEAGSILRALILLSLVPFIYFTYLFVSETLAIKTLIFVTFAGLRIRDVEIVSRSVLPRFYAEDVHPETWKVFNSFGKRYIVTASPRLMVEPFVKTFLGVDKVLGTELMVTKTGRASGFVKEPGVLVGEHKKEAVMKEFGSNNLPDLGLGDSVTDSDFMSICKEGYMVPRTKCDPLPRNKLLSPIIFHEGRLVQKPTPLFALLTFLWMPIGIILSILRVYLNIPLPEKIAWYNYKLLGIRVIRKGTPPPPPKKGQSGVLFVCNHRTVLDPVVTGVALGRKISCVTYSISKFTEIISPIKAVALSRERDRDAANIKKLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSLFYGTSARGHKLLDPYFVFMNPMPTYEITFLNQLPLELTCSGGKSSIEVANYIQRVLGGTLGFECTNLTRKDKYAILAGTDGIVRSTKKD*