AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0638340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638340 MtrunA17_Chr4g0005991 99.192 495 4 0 1 495 1 495 0.0 996
Msa0638340 MtrunA17_Chr7g0241831 84.040 495 77 2 1 494 3 496 0.0 851
Msa0638340 MtrunA17_Chr8g0348781 61.914 491 180 5 7 491 10 499 0.0 630
Msa0638340 MtrunA17_Chr1g0170421 57.895 494 200 5 7 494 41 532 0.0 589
Msa0638340 MtrunA17_Chr5g0435581 51.046 478 224 4 21 492 2 475 2.49e-164 474
Msa0638340 MtrunA17_Chr5g0443341 50.713 491 226 7 7 491 51 531 2.92e-162 470
Msa0638340 MtrunA17_Chr3g0096481 48.193 498 233 9 7 493 46 529 2.38e-155 452
Msa0638340 MtrunA17_Chr1g0194391 43.542 480 254 8 17 489 60 529 1.90e-127 381
Msa0638340 MtrunA17_Chr5g0425071 42.300 487 266 8 15 495 10 487 1.95e-121 364
Msa0638340 MtrunA17_Chr3g0096591 52.920 274 122 2 220 489 1 271 7.69e-99 298
Msa0638340 MtrunA17_Chr3g0096581 40.291 206 113 5 8 212 51 247 1.15e-41 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638340 AT2G38110.1 79.794 485 96 1 7 489 10 494 0.0 788
Msa0638340 AT4G00400.1 61.680 488 181 5 7 491 10 494 0.0 603
Msa0638340 AT1G01610.1 61.179 492 184 6 7 494 10 498 0.0 595
Msa0638340 AT3G11430.1 51.346 483 213 5 19 489 9 481 8.38e-166 478
Msa0638340 AT5G06090.1 48.560 486 222 6 19 489 7 479 8.79e-153 445
Msa0638340 AT1G06520.1 44.961 516 248 11 5 490 76 585 3.76e-146 431
Msa0638340 AT1G02390.1 39.468 489 276 9 16 490 46 528 1.40e-110 338
Msa0638340 AT4G01950.1 39.351 493 269 11 17 492 41 520 7.29e-108 331
Msa0638340 AT4G01950.2 39.351 493 269 11 17 492 69 548 2.01e-107 330
Msa0638340 AT3G11325.2 49.237 262 100 1 228 489 144 372 1.07e-83 264
Msa0638340 AT3G11325.2 37.143 105 66 0 31 135 9 113 2.51e-16 81.3
Msa0638340 AT3G11325.1 49.237 262 100 1 228 489 141 369 1.46e-83 264
Msa0638340 AT3G11325.1 37.143 105 66 0 31 135 6 110 2.89e-16 80.9

Find 133 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCCTTCCTTGTTAAAT+TGG 0.158055 4_3:-33773349 None:intergenic
GAGGCAGTTATGAAAGAATT+TGG 0.160182 4_3:+33769428 Msa0638340:CDS
TTGCACTCTTAACCTTCTTA+TGG 0.235930 4_3:+33772668 Msa0638340:CDS
CAAACTTATCTGCAAATTAA+TGG 0.250410 4_3:-33773942 None:intergenic
GAATTATCGACGGAAATTTC+AGG 0.258294 4_3:-33773589 None:intergenic
GAATCATACTTTCAATCTTA+AGG 0.293063 4_3:+33772701 Msa0638340:CDS
GAGTAACAATTTGCCTGATT+TGG 0.303564 4_3:+33769451 Msa0638340:CDS
AATTATATTCAAAGGGTTCT+TGG 0.305203 4_3:+33773303 Msa0638340:CDS
AGAAGCTTGTTTCTTGGTAA+TGG 0.311340 4_3:-33772592 None:intergenic
GGTTATACTATATACATATA+TGG 0.315571 4_3:+33773805 Msa0638340:three_prime_UTR
CATTAATTTGCAGATAAGTT+TGG 0.328455 4_3:+33773943 Msa0638340:three_prime_UTR
GATAAGTATGCTATTCTTGC+AGG 0.334585 4_3:+33773366 Msa0638340:CDS
GGGCTTAGAAGCTTGTTTCT+TGG 0.336364 4_3:-33772598 None:intergenic
TCTCTACATGTCGTTCCTTC+CGG 0.339845 4_3:-33773048 None:intergenic
TTTCTTGAATCAGTTGCCTT+TGG 0.341998 4_3:+33773239 Msa0638340:CDS
AGTAACAATTTGCCTGATTT+GGG 0.342680 4_3:+33769452 Msa0638340:CDS
AATCATACTTTCAATCTTAA+GGG 0.343266 4_3:+33772702 Msa0638340:CDS
TTTGTGCTACATTTGAAAAT+TGG 0.344058 4_3:-33768924 None:intergenic
AGGGTTCTTGGAGGGACTCT+TGG 0.352717 4_3:+33773315 Msa0638340:CDS
AATGAATTGTATTACAGTTA+TGG 0.352845 4_3:+33773834 Msa0638340:three_prime_UTR
GGATTCATGAACACAAAATA+AGG 0.356896 4_3:-33773195 None:intergenic
CCAAGGTCTCGGAGACAAAT+AGG 0.357156 4_3:-33769103 None:intergenic
GAAGCTTGTTTCTTGGTAAT+GGG 0.362820 4_3:-33772591 None:intergenic
TGGAAAGTGTTCAATTCGTT+CGG 0.372012 4_3:+33769239 Msa0638340:CDS
ACATCACAAAGATGCACTAT+AGG 0.372868 4_3:-33773779 None:intergenic
AGGCAGTTATGAAAGAATTT+GGG 0.373459 4_3:+33769429 Msa0638340:CDS
TCTTGGTAATGGGTCACATT+TGG 0.374038 4_3:-33772581 None:intergenic
TTGAAAATTGGTGGGAAAAG+TGG 0.380347 4_3:-33768912 None:intergenic
TTGAACACTTTCCATGTCTC+TGG 0.382477 4_3:-33769230 None:intergenic
GTTGTTACAGGAGTTGCATT+AGG 0.394796 4_3:+33772880 Msa0638340:CDS
TAAAAGCCGTTGCGCTTTCA+AGG 0.395510 4_3:+33772962 Msa0638340:CDS
CTGGATCTAAAACTGTTCTA+TGG 0.403705 4_3:-33772858 None:intergenic
GAGGGCAAGTGGGTTTGTTA+AGG 0.407100 4_3:+33769373 Msa0638340:CDS
TGGTACAATTATAAATTACT+TGG 0.415906 4_3:+33772760 Msa0638340:CDS
ACCTTCTTATGGATGCCAAT+TGG 0.419088 4_3:+33772679 Msa0638340:CDS
GGAAAGTGTTCAATTCGTTC+GGG 0.425126 4_3:+33769240 Msa0638340:CDS
AGTGCGACGAGCATGTAGTA+TGG 0.432920 4_3:-33769014 None:intergenic
AATGCAACTCCTGTAACAAC+TGG 0.433295 4_3:-33772877 None:intergenic
CACGGCTAGTCCAAGGTTGA+TGG 0.435779 4_3:+33769277 Msa0638340:CDS
AATGGGTCACATTTGGTCCT+TGG 0.442068 4_3:-33772574 None:intergenic
ATTGAAAGTATGATTCCAAT+TGG 0.443499 4_3:-33772694 None:intergenic
CTGTCTCCCAGTCCCAAATC+AGG 0.443748 4_3:-33769464 None:intergenic
TCAGGCGAAAACGATAAAAC+TGG 0.446684 4_3:-33773571 None:intergenic
CAATTTGCCTGATTTGGGAC+TGG 0.449611 4_3:+33769457 Msa0638340:CDS
ACACGAGAAGGGTGCCATCT+AGG 0.454550 4_3:-33768977 None:intergenic
ATGCTCGTCGCACTCGAAGC+TGG 0.455449 4_3:+33769023 Msa0638340:CDS
AAGAGTGCAAATAGAGGGGT+TGG 0.455638 4_3:-33772655 None:intergenic
GTAGAGAACCGTTTCTATTG+AGG 0.458187 4_3:+33773064 Msa0638340:CDS
ATGGGATTCTTATGCACAAA+TGG 0.458400 4_3:+33773894 Msa0638340:three_prime_UTR
TCCAATTGGCATCCATAAGA+AGG 0.458669 4_3:-33772680 None:intergenic
CGAAGAAAGATTAAAATTGA+AGG 0.466335 4_3:+33773412 Msa0638340:exon
AACTTTGAAATTAAACATCA+TGG 0.466576 4_3:-33773635 None:intergenic
AGATGTAACAATGTGGCATA+TGG 0.467889 4_3:+33773875 Msa0638340:three_prime_UTR
AATTTGCCTGATTTGGGACT+GGG 0.468437 4_3:+33769458 Msa0638340:CDS
AAGGAACCAGGAGTTCTTGT+TGG 0.472018 4_3:+33769392 Msa0638340:CDS
TAGTTGATTTATGTTGTTGA+GGG 0.473744 4_3:+33773748 Msa0638340:three_prime_UTR
TGCTTCGTATTAATCGCGAC+AGG 0.478003 4_3:-33773126 None:intergenic
TTTCTCGGTCAGTGTTGCCT+AGG 0.478351 4_3:+33769186 Msa0638340:CDS
CTAGGTCGGATGCCACGGTT+TGG 0.479842 4_3:-33768959 None:intergenic
TTGTCACATTCGCGGGGCTA+AGG 0.481220 4_3:+33769144 Msa0638340:CDS
GAAATATACGAAAGGGACTA+AGG 0.490330 4_3:-33769075 None:intergenic
CCTTTGGAATTGACTTGCAG+TGG 0.493619 4_3:+33773255 Msa0638340:CDS
GAGAGAGAGAGCGGGTGAAG+GGG 0.495630 4_3:-33768752 None:intergenic
TTAATCTTTGTCACATTCGC+GGG 0.496943 4_3:+33769137 Msa0638340:CDS
ATAAAGAAATTGCTTGAAGA+AGG 0.497977 4_3:+33773009 Msa0638340:CDS
GGCTCGCGGACACAAATTGT+TGG 0.498712 4_3:+33773170 Msa0638340:CDS
TTGTGAGGGAAATATGGAAT+TGG 0.500040 4_3:-33768822 None:intergenic
CACATTACAGGAAGGATACA+TGG 0.503595 4_3:+33772549 Msa0638340:intron
AGTTGCAAATTATATTCAAA+GGG 0.504087 4_3:+33773296 Msa0638340:CDS
AAGTTGCAAATTATATTCAA+AGG 0.504845 4_3:+33773295 Msa0638340:CDS
TTTGGGAGTAGATAAGGTGC+TGG 0.506447 4_3:+33769322 Msa0638340:CDS
AGTGCATCTTTGTGATGTAA+AGG 0.507474 4_3:+33773784 Msa0638340:three_prime_UTR
TTGGGAGTAGATAAGGTGCT+GGG 0.507686 4_3:+33769323 Msa0638340:CDS
TGTTCACCAACAAGAACTCC+TGG 0.509031 4_3:-33769398 None:intergenic
AAGAAAGTGATCTCATAAGT+TGG 0.509395 4_3:-33773222 None:intergenic
GCCATCTAGGTCGGATGCCA+CGG 0.509743 4_3:-33768964 None:intergenic
GCTATTCTTGCAGGAACAGA+TGG 0.510039 4_3:+33773375 Msa0638340:CDS
GGAATAAGAGTAATTAGAAA+AGG 0.510705 4_3:+33772781 Msa0638340:CDS
CCTATTTGTCTCCGAGACCT+TGG 0.512360 4_3:+33769103 Msa0638340:CDS
CTAGCTATAGAGATTATAGT+TGG 0.518502 4_3:-33768794 None:intergenic
AGGTTAAGAGTGCAAATAGA+GGG 0.520148 4_3:-33772660 None:intergenic
GGTGCTGGGGACTGAATTGA+TGG 0.520652 4_3:+33769337 Msa0638340:CDS
TAAAGGACGAAAGATGGGTA+TGG 0.520755 4_3:-33768725 None:intergenic
AGGTGACTTAGTGATTTGTC+CGG 0.526292 4_3:+33773029 Msa0638340:CDS
AAGACGTGGAGATTGTTTCT+CGG 0.526609 4_3:+33769171 Msa0638340:CDS
AAGGTTAAGAGTGCAAATAG+AGG 0.530421 4_3:-33772661 None:intergenic
TGACTTCATGTCTATTTGCA+AGG 0.539001 4_3:+33769499 Msa0638340:CDS
GGAAAGGCTCCCATGACAAA+GGG 0.539104 4_3:-33768891 None:intergenic
GTGCTACATTTGAAAATTGG+TGG 0.542118 4_3:-33768921 None:intergenic
GCACTAAACCTCAATAGAAA+CGG 0.544972 4_3:-33773072 None:intergenic
ATATTCAAAGGGTTCTTGGA+GGG 0.546066 4_3:+33773307 Msa0638340:CDS
ATGCACTTCGCGACACGAGA+AGG 0.548044 4_3:-33768989 None:intergenic
TGTTGGTGAACACAAGAAAG+AGG 0.548662 4_3:+33769409 Msa0638340:CDS
GTAGTTGATTTATGTTGTTG+AGG 0.551188 4_3:+33773747 Msa0638340:three_prime_UTR
AGTGGGTTTGTTAAGGAACC+AGG 0.551989 4_3:+33769380 Msa0638340:CDS
TGCTACATTTGAAAATTGGT+GGG 0.553187 4_3:-33768920 None:intergenic
AATGGCTCAACCATCAACCT+TGG 0.553342 4_3:-33769287 None:intergenic
TGTCTCTGGATGCACGTCCT+CGG 0.553696 4_3:-33769216 None:intergenic
GGTACGTGAAATATACGAAA+GGG 0.556590 4_3:-33769082 None:intergenic
ATGTACCAATTTAACAAGGA+AGG 0.557734 4_3:+33773344 Msa0638340:CDS
TATATTCAAAGGGTTCTTGG+AGG 0.558009 4_3:+33773306 Msa0638340:CDS
AAAAGCCGTTGCGCTTTCAA+GGG 0.561930 4_3:+33772963 Msa0638340:CDS
TGGAATTGACTTGCAGTGGA+GGG 0.564415 4_3:+33773259 Msa0638340:CDS
TTGGAATTGACTTGCAGTGG+AGG 0.574024 4_3:+33773258 Msa0638340:CDS
ATTAATCTTTGTCACATTCG+CGG 0.578687 4_3:+33769136 Msa0638340:CDS
GAAGAAAGATTAAAATTGAA+GGG 0.579270 4_3:+33773413 Msa0638340:exon
GTGATCTCATAAGTTGGCAT+AGG 0.582217 4_3:-33773216 None:intergenic
TGGAAAGGCTCCCATGACAA+AGG 0.584665 4_3:-33768892 None:intergenic
ACCGTGGCATCCGACCTAGA+TGG 0.591495 4_3:+33768963 Msa0638340:CDS
GGTTAAGAGTGCAAATAGAG+GGG 0.592460 4_3:-33772659 None:intergenic
TGCACTTCGCGACACGAGAA+GGG 0.596300 4_3:-33768988 None:intergenic
AGGACGTGCATCCAGAGACA+TGG 0.604083 4_3:+33769219 Msa0638340:CDS
TCTTTCCCTTGAAAGCGCAA+CGG 0.605263 4_3:-33772968 None:intergenic
AGGTACGTGAAATATACGAA+AGG 0.608258 4_3:-33769083 None:intergenic
TCGTCACAAAATATCAAAGA+CGG 0.613506 4_3:+33773536 Msa0638340:three_prime_UTR
GAGAAGGGTGCCATCTAGGT+CGG 0.614645 4_3:-33768973 None:intergenic
ACATTGTCACGGCTAGTCCA+AGG 0.617998 4_3:+33769270 Msa0638340:CDS
GTTGCCTAGGTTCTATGCCG+AGG 0.628644 4_3:+33769199 Msa0638340:CDS
GATGTAACAATGTGGCATAT+GGG 0.632032 4_3:+33773876 Msa0638340:three_prime_UTR
GCTTCGTATTAATCGCGACA+GGG 0.633339 4_3:-33773125 None:intergenic
CCACTGCAAGTCAATTCCAA+AGG 0.642771 4_3:-33773255 None:intergenic
GACTTAGTGATTTGTCCGGA+AGG 0.655073 4_3:+33773033 Msa0638340:CDS
ACGTCCTCGGCATAGAACCT+AGG 0.656526 4_3:-33769203 None:intergenic
AATTGGTGGGAAAAGTGGAA+AGG 0.657733 4_3:-33768907 None:intergenic
TTGAATGTACCAATTTAACA+AGG 0.660163 4_3:+33773340 Msa0638340:CDS
TGGGAGTAGATAAGGTGCTG+GGG 0.665648 4_3:+33769324 Msa0638340:CDS
TAATCTTTGTCACATTCGCG+GGG 0.673980 4_3:+33769138 Msa0638340:CDS
AGGAAGGATACATGGTACCA+AGG 0.684832 4_3:+33772557 Msa0638340:intron
CGGGAAACGATACATTGTCA+CGG 0.691995 4_3:+33769259 Msa0638340:CDS
AGATAGATCAAACCAAACCG+TGG 0.705896 4_3:+33768947 Msa0638340:CDS
GGGGCTAAGGATAAAAGACG+TGG 0.717767 4_3:+33769157 Msa0638340:CDS
AAGGGAAAGAGATAGAGATG+CGG 0.731861 4_3:+33772981 Msa0638340:CDS
CTGATTGAGATGTAACAATG+TGG 0.770996 4_3:+33773868 Msa0638340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATGTTTTATTAATTAA+TGG + chr4_3:33769719-33769738 Msa0638340:intron 10.0%
!! ATAACAAAAATATATATGAA+TGG - chr4_3:33769978-33769997 None:intergenic 10.0%
!! TGATGATTATTAAATTATAT+CGG + chr4_3:33770937-33770956 Msa0638340:intron 10.0%
!! AAAAATAAAAATACATAGTT+AGG - chr4_3:33772036-33772055 None:intergenic 10.0%
!! AACTAACACATTATATAATT+TGG - chr4_3:33769594-33769613 None:intergenic 15.0%
!!! TTATATAATGTGTTAGTTTA+TGG + chr4_3:33769596-33769615 Msa0638340:intron 15.0%
!! TAATAGACTATAATTTAGAA+TGG + chr4_3:33769797-33769816 Msa0638340:intron 15.0%
!! CAAAAACATGATAAATAAAT+AGG - chr4_3:33769952-33769971 None:intergenic 15.0%
!!! TTTTTTTTTCAATCTAACTT+AGG + chr4_3:33770485-33770504 Msa0638340:intron 15.0%
!!! GATTTTTTTTTTTTTTGAAG+AGG - chr4_3:33771503-33771522 None:intergenic 15.0%
!!! ATTTTCATACATTTTTTATG+TGG - chr4_3:33771716-33771735 None:intergenic 15.0%
!!! GATTTTTTTTTTTCTTCTAA+TGG + chr4_3:33772274-33772293 Msa0638340:intron 15.0%
!!! TTTTCATCTGTAATTTAATT+TGG - chr4_3:33773495-33773514 None:intergenic 15.0%
!! TTAAAAAAATGAATTATCGA+CGG - chr4_3:33773602-33773621 None:intergenic 15.0%
!!! GTACATAATATGTTATTTTT+AGG - chr4_3:33773705-33773724 None:intergenic 15.0%
!! TGACAACTAAAAAATTATAC+TGG - chr4_3:33770279-33770298 None:intergenic 20.0%
!!! TTTTTAGTTGTCACAAATTA+AGG + chr4_3:33770286-33770305 Msa0638340:intron 20.0%
!!! TTTTAGTTGTCACAAATTAA+GGG + chr4_3:33770287-33770306 Msa0638340:intron 20.0%
!!! AAGTTTTAGGTGAAAAAAAT+AGG - chr4_3:33770546-33770565 None:intergenic 20.0%
!!! TTTTTGTAGATGTGATATTA+GGG + chr4_3:33770608-33770627 Msa0638340:intron 20.0%
!! GTAAATTGAGAAATCAAAAT+AGG - chr4_3:33770665-33770684 None:intergenic 20.0%
!!! TCTTTTTCAAATTTCTGTTT+TGG + chr4_3:33770845-33770864 Msa0638340:intron 20.0%
!!! AACTTTAGAGAACAAAAAAA+TGG - chr4_3:33771162-33771181 None:intergenic 20.0%
!!! TATAAAGCATCAATAAAGTT+AGG - chr4_3:33771190-33771209 None:intergenic 20.0%
!! TTTCTTCTTCTGTATATTAT+TGG - chr4_3:33771353-33771372 None:intergenic 20.0%
!! CAATTATAAAATCAGTTCTA+GGG + chr4_3:33771396-33771415 Msa0638340:intron 20.0%
!!! TTTTTTTTTTTGAAGAGGAT+TGG - chr4_3:33771498-33771517 None:intergenic 20.0%
!! AATAAAATTTAGGAAGTCTA+GGG - chr4_3:33771781-33771800 None:intergenic 20.0%
!! AAATAAAATTTAGGAAGTCT+AGG - chr4_3:33771782-33771801 None:intergenic 20.0%
!! AACAAGGACAAATAAAATTT+AGG - chr4_3:33771791-33771810 None:intergenic 20.0%
!! AGAAAAGAAAAAAAAGAACA+AGG - chr4_3:33771807-33771826 None:intergenic 20.0%
!! TTATGATAACTTTATGAGTT+TGG - chr4_3:33772004-33772023 None:intergenic 20.0%
!! AGAAATAATTAGACTATGTT+TGG - chr4_3:33772529-33772548 None:intergenic 20.0%
!! TGGTACAATTATAAATTACT+TGG + chr4_3:33772760-33772779 Msa0638340:CDS 20.0%
!!! TTTTATAGGCGAAATTATTT+CGG - chr4_3:33772947-33772966 None:intergenic 20.0%
!! AAGTTGCAAATTATATTCAA+AGG + chr4_3:33773295-33773314 Msa0638340:CDS 20.0%
!! AGTTGCAAATTATATTCAAA+GGG + chr4_3:33773296-33773315 Msa0638340:CDS 20.0%
!! GAAGAAAGATTAAAATTGAA+GGG + chr4_3:33773413-33773432 Msa0638340:exon 20.0%
!!! AACTTTGAAATTAAACATCA+TGG - chr4_3:33773638-33773657 None:intergenic 20.0%
!! GGTTATACTATATACATATA+TGG + chr4_3:33773805-33773824 Msa0638340:three_prime_UTR 20.0%
!! AATGAATTGTATTACAGTTA+TGG + chr4_3:33773834-33773853 Msa0638340:three_prime_UTR 20.0%
!! AAATTAATGGCAAAAAAACA+AGG - chr4_3:33773932-33773951 None:intergenic 20.0%
!!! AAGGGAGAAAATTTTTTAGA+AGG - chr4_3:33768876-33768895 None:intergenic 25.0%
! TTTGTGCTACATTTGAAAAT+TGG - chr4_3:33768927-33768946 None:intergenic 25.0%
!!! CCATTTGTTAAGACATTTTT+GGG + chr4_3:33769305-33769324 Msa0638340:CDS 25.0%
!! AATTGATGGTTACAAAAACA+GGG + chr4_3:33769351-33769370 Msa0638340:CDS 25.0%
!! ATTTGTGAATGTCGATTAAA+AGG - chr4_3:33769650-33769669 None:intergenic 25.0%
!! AGACTATAATTTAGAATGGA+TGG + chr4_3:33769801-33769820 Msa0638340:intron 25.0%
! ATTAAATTGACTACAGAAAC+TGG - chr4_3:33769899-33769918 None:intergenic 25.0%
! CAGATAGATATGGATATATT+AGG - chr4_3:33769929-33769948 None:intergenic 25.0%
! AATAAATAGGCAGATAGATA+TGG - chr4_3:33769939-33769958 None:intergenic 25.0%
!! AATTATACTGGAGGATATTT+TGG - chr4_3:33770267-33770286 None:intergenic 25.0%
! CAACTAAAAAATTATACTGG+AGG - chr4_3:33770276-33770295 None:intergenic 25.0%
! TTTAGTTGTCACAAATTAAG+GGG + chr4_3:33770288-33770307 Msa0638340:intron 25.0%
!! AGTCATATTTCACAAGTTTT+AGG - chr4_3:33770559-33770578 None:intergenic 25.0%
!! GTTTTTGTAGATGTGATATT+AGG + chr4_3:33770607-33770626 Msa0638340:intron 25.0%
! ATGTGATATTAGGGATTAAA+AGG + chr4_3:33770617-33770636 Msa0638340:intron 25.0%
! TGTGATATTAGGGATTAAAA+GGG + chr4_3:33770618-33770637 Msa0638340:intron 25.0%
! ATTGAGAAATCAAAATAGGA+AGG - chr4_3:33770661-33770680 None:intergenic 25.0%
!!! TTTCAAATTTCTGTTTTGGA+TGG + chr4_3:33770849-33770868 Msa0638340:intron 25.0%
!!! TTCAAATTTCTGTTTTGGAT+GGG + chr4_3:33770850-33770869 Msa0638340:intron 25.0%
! AGACATAAATTTAAGGAAAG+AGG - chr4_3:33771027-33771046 None:intergenic 25.0%
! CGAAAACAGACATAAATTTA+AGG - chr4_3:33771034-33771053 None:intergenic 25.0%
!! GTTTTCGTGTATAATTTTTC+CGG + chr4_3:33771047-33771066 Msa0638340:intron 25.0%
! TAAAGATAGAAAAAGACAGA+TGG - chr4_3:33771104-33771123 None:intergenic 25.0%
! CAATAAACACGATATTGATA+TGG + chr4_3:33771242-33771261 Msa0638340:intron 25.0%
! AGAAGAAAAAAATCCCTAAT+TGG + chr4_3:33771365-33771384 Msa0638340:intron 25.0%
! AATTGGAAGATATCCAATTA+GGG - chr4_3:33771381-33771400 None:intergenic 25.0%
! TAATTGGAAGATATCCAATT+AGG - chr4_3:33771382-33771401 None:intergenic 25.0%
!!! CCTAGAACTGATTTTATAAT+TGG - chr4_3:33771398-33771417 None:intergenic 25.0%
! CCAATTATAAAATCAGTTCT+AGG + chr4_3:33771395-33771414 Msa0638340:intron 25.0%
!!! ATTGACTAGTATTTTAGCTT+GGG - chr4_3:33771427-33771446 None:intergenic 25.0%
!!! AATTGACTAGTATTTTAGCT+TGG - chr4_3:33771428-33771447 None:intergenic 25.0%
! GGATATAGAGATGTTAAAAT+GGG - chr4_3:33771477-33771496 None:intergenic 25.0%
! TGGATATAGAGATGTTAAAA+TGG - chr4_3:33771478-33771497 None:intergenic 25.0%
! ATAAAATTTAGGAAGTCTAG+GGG - chr4_3:33771780-33771799 None:intergenic 25.0%
!! CATTTTATCATACTGTCATA+TGG - chr4_3:33771950-33771969 None:intergenic 25.0%
! AAATTATCAGTTCATAGACT+AGG - chr4_3:33772078-33772097 None:intergenic 25.0%
!!! AAGTCTTTTAGTTGAACTTA+TGG + chr4_3:33772312-33772331 Msa0638340:intron 25.0%
!! CTTATTTCCATAAGCTTTTT+AGG + chr4_3:33772370-33772389 Msa0638340:intron 25.0%
! AAGTTATCCTAAAAAGCTTA+TGG - chr4_3:33772380-33772399 None:intergenic 25.0%
!! CTAATTATTTCTCACATTAC+AGG + chr4_3:33772537-33772556 Msa0638340:intron 25.0%
! TACCCTCATGAAAAATAATT+GGG - chr4_3:33772621-33772640 None:intergenic 25.0%
!! ATTGAAAGTATGATTCCAAT+TGG - chr4_3:33772697-33772716 None:intergenic 25.0%
!!! AAGCAATTTTTTCAGGTAAA+GGG - chr4_3:33772741-33772760 None:intergenic 25.0%
! GGAATAAGAGTAATTAGAAA+AGG + chr4_3:33772781-33772800 Msa0638340:CDS 25.0%
! ATAAAGAAATTGCTTGAAGA+AGG + chr4_3:33773009-33773028 Msa0638340:CDS 25.0%
!!! AAGTTTGTTTTATGGAACAT+CGG + chr4_3:33773149-33773168 Msa0638340:CDS 25.0%
! AATTATATTCAAAGGGTTCT+TGG + chr4_3:33773303-33773322 Msa0638340:CDS 25.0%
! TTGAATGTACCAATTTAACA+AGG + chr4_3:33773340-33773359 Msa0638340:CDS 25.0%
! CGAAGAAAGATTAAAATTGA+AGG + chr4_3:33773412-33773431 Msa0638340:exon 25.0%
!! TAGTTGATTTATGTTGTTGA+GGG + chr4_3:33773748-33773767 Msa0638340:three_prime_UTR 25.0%
! CAAACTTATCTGCAAATTAA+TGG - chr4_3:33773945-33773964 None:intergenic 25.0%
!!! CATTAATTTGCAGATAAGTT+TGG + chr4_3:33773943-33773962 Msa0638340:three_prime_UTR 25.0%
!! GTTTTTAAAGGACGAAAGAT+GGG - chr4_3:33768733-33768752 None:intergenic 30.0%
CTAGCTATAGAGATTATAGT+TGG - chr4_3:33768797-33768816 None:intergenic 30.0%
! TTTGCTAAGATGTTTTGTGA+GGG - chr4_3:33768839-33768858 None:intergenic 30.0%
! AAAATTTTCTCCCTTTGTCA+TGG + chr4_3:33768881-33768900 Msa0638340:exon 30.0%
! AAATTTTCTCCCTTTGTCAT+GGG + chr4_3:33768882-33768901 Msa0638340:exon 30.0%
TGCTACATTTGAAAATTGGT+GGG - chr4_3:33768923-33768942 None:intergenic 30.0%
!!! GATTAATGTTTTGATTGCCA+AGG - chr4_3:33769123-33769142 None:intergenic 30.0%
ATTAATCTTTGTCACATTCG+CGG + chr4_3:33769136-33769155 Msa0638340:CDS 30.0%
!! GCCATTTGTTAAGACATTTT+TGG + chr4_3:33769304-33769323 Msa0638340:CDS 30.0%
CCCAAAAATGTCTTAACAAA+TGG - chr4_3:33769308-33769327 None:intergenic 30.0%
! GAATTGATGGTTACAAAAAC+AGG + chr4_3:33769350-33769369 Msa0638340:CDS 30.0%
AGGCAGTTATGAAAGAATTT+GGG + chr4_3:33769429-33769448 Msa0638340:CDS 30.0%
AGTAACAATTTGCCTGATTT+GGG + chr4_3:33769452-33769471 Msa0638340:CDS 30.0%
ACAATAACTAAGCTCTCTTT+GGG + chr4_3:33770104-33770123 Msa0638340:intron 30.0%
TTAGTTGTCACAAATTAAGG+GGG + chr4_3:33770289-33770308 Msa0638340:intron 30.0%
TCTGTTTGAGAGTTTAAAAG+GGG - chr4_3:33770412-33770431 None:intergenic 30.0%
GTCTGTTTGAGAGTTTAAAA+GGG - chr4_3:33770413-33770432 None:intergenic 30.0%
!!! TGACTTTTCTGAAACAATTC+AGG + chr4_3:33770574-33770593 Msa0638340:intron 30.0%
ACCCAACATCAAAAAATTAG+GGG - chr4_3:33770963-33770982 None:intergenic 30.0%
CACCCAACATCAAAAAATTA+GGG - chr4_3:33770964-33770983 None:intergenic 30.0%
TCACCCAACATCAAAAAATT+AGG - chr4_3:33770965-33770984 None:intergenic 30.0%
CATAAATTTAAGGAAAGAGG+AGG - chr4_3:33771024-33771043 None:intergenic 30.0%
!! ATTGAGTTGAGTTGGATTAT+AGG + chr4_3:33771445-33771464 Msa0638340:intron 30.0%
!! TTGAGTTGAGTTGGATTATA+GGG + chr4_3:33771446-33771465 Msa0638340:intron 30.0%
ACTACTACATAGTAATAGGT+TGG - chr4_3:33771667-33771686 None:intergenic 30.0%
GAGTACTACTACATAGTAAT+AGG - chr4_3:33771671-33771690 None:intergenic 30.0%
TTTCTAGATATCACAGATTC+AGG + chr4_3:33771822-33771841 Msa0638340:intron 30.0%
TTCTAGATATCACAGATTCA+GGG + chr4_3:33771823-33771842 Msa0638340:intron 30.0%
! CATGTAGCATGATTTCTTTT+AGG + chr4_3:33771872-33771891 Msa0638340:intron 30.0%
ATGAACTGATAATTTCCACA+TGG + chr4_3:33772083-33772102 Msa0638340:intron 30.0%
! GAAAACCTTAACTGTTTTGT+GGG - chr4_3:33772135-33772154 None:intergenic 30.0%
! AGAAAACCTTAACTGTTTTG+TGG - chr4_3:33772136-33772155 None:intergenic 30.0%
! CAAAACAGTTAAGGTTTTCT+AGG + chr4_3:33772136-33772155 Msa0638340:intron 30.0%
! TTATTTCTCACATTACAGGA+AGG + chr4_3:33772541-33772560 Msa0638340:intron 30.0%
!! AAGCCCAATTATTTTTCATG+AGG + chr4_3:33772615-33772634 Msa0638340:CDS 30.0%
!! AGCCCAATTATTTTTCATGA+GGG + chr4_3:33772616-33772635 Msa0638340:CDS 30.0%
CTACCCTCATGAAAAATAAT+TGG - chr4_3:33772622-33772641 None:intergenic 30.0%
!!! CAAGCAATTTTTTCAGGTAA+AGG - chr4_3:33772742-33772761 None:intergenic 30.0%
CTTTACCTGAAAAAATTGCT+TGG + chr4_3:33772740-33772759 Msa0638340:CDS 30.0%
!!! TTGTACCAAGCAATTTTTTC+AGG - chr4_3:33772748-33772767 None:intergenic 30.0%
! TGCTCTTTTTGCAGAATTAA+CGG + chr4_3:33773092-33773111 Msa0638340:CDS 30.0%
!! TTTTTGCAGAATTAACGGAT+AGG + chr4_3:33773097-33773116 Msa0638340:CDS 30.0%
!!! ACGAAGCAAAGTTTGTTTTA+TGG + chr4_3:33773141-33773160 Msa0638340:CDS 30.0%
GGATTCATGAACACAAAATA+AGG - chr4_3:33773198-33773217 None:intergenic 30.0%
AAGAAAGTGATCTCATAAGT+TGG - chr4_3:33773225-33773244 None:intergenic 30.0%
ATGTACCAATTTAACAAGGA+AGG + chr4_3:33773344-33773363 Msa0638340:CDS 30.0%
CTTATCCTTCCTTGTTAAAT+TGG - chr4_3:33773352-33773371 None:intergenic 30.0%
TCGTCACAAAATATCAAAGA+CGG + chr4_3:33773536-33773555 Msa0638340:three_prime_UTR 30.0%
! GTAGTTGATTTATGTTGTTG+AGG + chr4_3:33773747-33773766 Msa0638340:three_prime_UTR 30.0%
!! GGTTTTTAAAGGACGAAAGA+TGG - chr4_3:33768734-33768753 None:intergenic 35.0%
TTGTGAGGGAAATATGGAAT+TGG - chr4_3:33768825-33768844 None:intergenic 35.0%
! GATGTTTTGTGAGGGAAATA+TGG - chr4_3:33768831-33768850 None:intergenic 35.0%
!! GTTTGCTAAGATGTTTTGTG+AGG - chr4_3:33768840-33768859 None:intergenic 35.0%
TTGAAAATTGGTGGGAAAAG+TGG - chr4_3:33768915-33768934 None:intergenic 35.0%
GTGCTACATTTGAAAATTGG+TGG - chr4_3:33768924-33768943 None:intergenic 35.0%
GAAATATACGAAAGGGACTA+AGG - chr4_3:33769078-33769097 None:intergenic 35.0%
GGTACGTGAAATATACGAAA+GGG - chr4_3:33769085-33769104 None:intergenic 35.0%
AGGTACGTGAAATATACGAA+AGG - chr4_3:33769086-33769105 None:intergenic 35.0%
TTAATCTTTGTCACATTCGC+GGG + chr4_3:33769137-33769156 Msa0638340:CDS 35.0%
!! TGGAAAGTGTTCAATTCGTT+CGG + chr4_3:33769239-33769258 Msa0638340:CDS 35.0%
!! GACATTTTTGGGAGTAGATA+AGG + chr4_3:33769316-33769335 Msa0638340:CDS 35.0%
GAGGCAGTTATGAAAGAATT+TGG + chr4_3:33769428-33769447 Msa0638340:CDS 35.0%
GAGTAACAATTTGCCTGATT+TGG + chr4_3:33769451-33769470 Msa0638340:CDS 35.0%
TGACTTCATGTCTATTTGCA+AGG + chr4_3:33769499-33769518 Msa0638340:CDS 35.0%
CACAATAACTAAGCTCTCTT+TGG + chr4_3:33770103-33770122 Msa0638340:intron 35.0%
!! GAGGATATTTTGGATGGTTT+GGG - chr4_3:33770257-33770276 None:intergenic 35.0%
!! ATACTGGAGGATATTTTGGA+TGG - chr4_3:33770263-33770282 None:intergenic 35.0%
ATTAAGGGGGTTTCATATCT+TGG + chr4_3:33770302-33770321 Msa0638340:intron 35.0%
CAAGAAAAGGAAGGATGAAA+TGG - chr4_3:33770379-33770398 None:intergenic 35.0%
GGTCTGTTTGAGAGTTTAAA+AGG - chr4_3:33770414-33770433 None:intergenic 35.0%
GCGCACATACACATATATAT+GGG - chr4_3:33770790-33770809 None:intergenic 35.0%
TGCGCACATACACATATATA+TGG - chr4_3:33770791-33770810 None:intergenic 35.0%
!!! GCCCCTAATTTTTTGATGTT+GGG + chr4_3:33770959-33770978 Msa0638340:intron 35.0%
! TTCGTGTATAATTTTTCCGG+TGG + chr4_3:33771050-33771069 Msa0638340:intron 35.0%
CTATCTTTACTAGCTCGTAT+TGG + chr4_3:33771115-33771134 Msa0638340:intron 35.0%
AATGGACCATGGTTTGAATT+GGG - chr4_3:33771144-33771163 None:intergenic 35.0%
AAATGGACCATGGTTTGAAT+TGG - chr4_3:33771145-33771164 None:intergenic 35.0%
GAGAACAAAAAAATGGACCA+TGG - chr4_3:33771155-33771174 None:intergenic 35.0%
!! TGTATGTGTCACTTCTTCAT+AGG - chr4_3:33771218-33771237 None:intergenic 35.0%
ATGAAGAAGTGACACATACA+CGG + chr4_3:33771218-33771237 Msa0638340:intron 35.0%
!! TTCAATCAAAAGTATCGTGC+CGG + chr4_3:33771313-33771332 Msa0638340:intron 35.0%
! ATTGGTTTACTCTGTTGTAC+CGG - chr4_3:33771335-33771354 None:intergenic 35.0%
!! ACTAGTCAATTGAGTTGAGT+TGG + chr4_3:33771437-33771456 Msa0638340:intron 35.0%
GGTTGGACATGAGAAATTTA+TGG - chr4_3:33771650-33771669 None:intergenic 35.0%
TTTATGTGGTACAAGCTGTA+CGG - chr4_3:33771702-33771721 None:intergenic 35.0%
ACAAGGATTGTGCTTTCTTA+TGG - chr4_3:33771751-33771770 None:intergenic 35.0%
AACTGATAATTTCCACATGG+AGG + chr4_3:33772086-33772105 Msa0638340:intron 35.0%
AAACCACCGATATAACTTCA+TGG + chr4_3:33772109-33772128 Msa0638340:intron 35.0%
! GAAGCTTGTTTCTTGGTAAT+GGG - chr4_3:33772594-33772613 None:intergenic 35.0%
! AGAAGCTTGTTTCTTGGTAA+TGG - chr4_3:33772595-33772614 None:intergenic 35.0%
! AGGTTAAGAGTGCAAATAGA+GGG - chr4_3:33772663-33772682 None:intergenic 35.0%
! AAGGTTAAGAGTGCAAATAG+AGG - chr4_3:33772664-33772683 None:intergenic 35.0%
TTGCACTCTTAACCTTCTTA+TGG + chr4_3:33772668-33772687 Msa0638340:CDS 35.0%
!!! ACACCACTTTGACCTTTTTT+GGG - chr4_3:33772823-33772842 None:intergenic 35.0%
!!! AACACCACTTTGACCTTTTT+TGG - chr4_3:33772824-33772843 None:intergenic 35.0%
! CTGGATCTAAAACTGTTCTA+TGG - chr4_3:33772861-33772880 None:intergenic 35.0%
!! GTTTTAGATCCAGTTGTTAC+AGG + chr4_3:33772868-33772887 Msa0638340:CDS 35.0%
GCACTAAACCTCAATAGAAA+CGG - chr4_3:33773075-33773094 None:intergenic 35.0%
TTTCTTGAATCAGTTGCCTT+TGG + chr4_3:33773239-33773258 Msa0638340:CDS 35.0%
TATATTCAAAGGGTTCTTGG+AGG + chr4_3:33773306-33773325 Msa0638340:CDS 35.0%
ATATTCAAAGGGTTCTTGGA+GGG + chr4_3:33773307-33773326 Msa0638340:CDS 35.0%
GATAAGTATGCTATTCTTGC+AGG + chr4_3:33773366-33773385 Msa0638340:CDS 35.0%
GAATTATCGACGGAAATTTC+AGG - chr4_3:33773592-33773611 None:intergenic 35.0%
ACATCACAAAGATGCACTAT+AGG - chr4_3:33773782-33773801 None:intergenic 35.0%
AGTGCATCTTTGTGATGTAA+AGG + chr4_3:33773784-33773803 Msa0638340:three_prime_UTR 35.0%
CTGATTGAGATGTAACAATG+TGG + chr4_3:33773868-33773887 Msa0638340:three_prime_UTR 35.0%
AGATGTAACAATGTGGCATA+TGG + chr4_3:33773875-33773894 Msa0638340:three_prime_UTR 35.0%
GATGTAACAATGTGGCATAT+GGG + chr4_3:33773876-33773895 Msa0638340:three_prime_UTR 35.0%
ATGGGATTCTTATGCACAAA+TGG + chr4_3:33773894-33773913 Msa0638340:three_prime_UTR 35.0%
TAAAGGACGAAAGATGGGTA+TGG - chr4_3:33768728-33768747 None:intergenic 40.0%
TTATGATGAGAGAGAGAGAG+CGG - chr4_3:33768764-33768783 None:intergenic 40.0%
AATTGGTGGGAAAAGTGGAA+AGG - chr4_3:33768910-33768929 None:intergenic 40.0%
AGATAGATCAAACCAAACCG+TGG + chr4_3:33768947-33768966 Msa0638340:CDS 40.0%
!!! TGTTTTGATTGCCAAGGTCT+CGG - chr4_3:33769117-33769136 None:intergenic 40.0%
TAATCTTTGTCACATTCGCG+GGG + chr4_3:33769138-33769157 Msa0638340:CDS 40.0%
! AAGACGTGGAGATTGTTTCT+CGG + chr4_3:33769171-33769190 Msa0638340:CDS 40.0%
TTGAACACTTTCCATGTCTC+TGG - chr4_3:33769233-33769252 None:intergenic 40.0%
!! GGAAAGTGTTCAATTCGTTC+GGG + chr4_3:33769240-33769259 Msa0638340:CDS 40.0%
TGATGGTTACAAAAACAGGG+AGG + chr4_3:33769354-33769373 Msa0638340:CDS 40.0%
GATGGTTACAAAAACAGGGA+GGG + chr4_3:33769355-33769374 Msa0638340:CDS 40.0%
! TGTTGGTGAACACAAGAAAG+AGG + chr4_3:33769409-33769428 Msa0638340:CDS 40.0%
!! AATTTGCCTGATTTGGGACT+GGG + chr4_3:33769458-33769477 Msa0638340:CDS 40.0%
CTAGATCCTCTTGTTACACA+TGG + chr4_3:33769675-33769694 Msa0638340:intron 40.0%
CATGTTCCATGTGTAACAAG+AGG - chr4_3:33769684-33769703 None:intergenic 40.0%
! TTTGGATGGTTTGGGAGATT+CGG - chr4_3:33770249-33770268 None:intergenic 40.0%
!! GGAGGATATTTTGGATGGTT+TGG - chr4_3:33770258-33770277 None:intergenic 40.0%
TAGATGATTTCGAGAGCAGA+GGG - chr4_3:33770350-33770369 None:intergenic 40.0%
ATAGATGATTTCGAGAGCAG+AGG - chr4_3:33770351-33770370 None:intergenic 40.0%
GAGAGCTTTCAAGAAAAGGA+AGG - chr4_3:33770388-33770407 None:intergenic 40.0%
GACTCTAGTATGAACACTTC+AGG - chr4_3:33770435-33770454 None:intergenic 40.0%
!!! GGCCCCTAATTTTTTGATGT+TGG + chr4_3:33770958-33770977 Msa0638340:intron 40.0%
ATGGACCATGGTTTGAATTG+GGG - chr4_3:33771143-33771162 None:intergenic 40.0%
!! ATGTGTCACTTCTTCATAGG+TGG - chr4_3:33771215-33771234 None:intergenic 40.0%
!! GGCACGATACTTTTGATTGA+AGG - chr4_3:33771314-33771333 None:intergenic 40.0%
CCACTATGTTGAGATGTGAT+TGG - chr4_3:33771533-33771552 None:intergenic 40.0%
CCAATCACATCTCAACATAG+TGG + chr4_3:33771530-33771549 Msa0638340:intron 40.0%
AAGTCTAGGGGAATATCACA+AGG - chr4_3:33771768-33771787 None:intergenic 40.0%
! CAGGGACTTTTTGTTGAGTA+AGG + chr4_3:33771841-33771860 Msa0638340:intron 40.0%
TGTGGGCCATGAAGTTATAT+CGG - chr4_3:33772118-33772137 None:intergenic 40.0%
CACATTACAGGAAGGATACA+TGG + chr4_3:33772549-33772568 Msa0638340:intron 40.0%
!! TCTTGGTAATGGGTCACATT+TGG - chr4_3:33772584-33772603 None:intergenic 40.0%
!!! CAAATAGAGGGGTTGGTTTT+TGG - chr4_3:33772651-33772670 None:intergenic 40.0%
! GGTTAAGAGTGCAAATAGAG+GGG - chr4_3:33772662-33772681 None:intergenic 40.0%
ACCTTCTTATGGATGCCAAT+TGG + chr4_3:33772679-33772698 Msa0638340:CDS 40.0%
TCCAATTGGCATCCATAAGA+AGG - chr4_3:33772683-33772702 None:intergenic 40.0%
AATGCAACTCCTGTAACAAC+TGG - chr4_3:33772880-33772899 None:intergenic 40.0%
GTTGTTACAGGAGTTGCATT+AGG + chr4_3:33772880-33772899 Msa0638340:CDS 40.0%
AAGGGAAAGAGATAGAGATG+CGG + chr4_3:33772981-33773000 Msa0638340:CDS 40.0%
! AGGTGACTTAGTGATTTGTC+CGG + chr4_3:33773029-33773048 Msa0638340:CDS 40.0%
GTAGAGAACCGTTTCTATTG+AGG + chr4_3:33773064-33773083 Msa0638340:CDS 40.0%
! GTGATCTCATAAGTTGGCAT+AGG - chr4_3:33773219-33773238 None:intergenic 40.0%
TCAGGCGAAAACGATAAAAC+TGG - chr4_3:33773574-33773593 None:intergenic 40.0%
TATGATGAGAGAGAGAGAGC+GGG - chr4_3:33768763-33768782 None:intergenic 45.0%
CGGGAAACGATACATTGTCA+CGG + chr4_3:33769259-33769278 Msa0638340:CDS 45.0%
AATGGCTCAACCATCAACCT+TGG - chr4_3:33769290-33769309 None:intergenic 45.0%
TTTGGGAGTAGATAAGGTGC+TGG + chr4_3:33769322-33769341 Msa0638340:CDS 45.0%
! TTGGGAGTAGATAAGGTGCT+GGG + chr4_3:33769323-33769342 Msa0638340:CDS 45.0%
!! AGTGGGTTTGTTAAGGAACC+AGG + chr4_3:33769380-33769399 Msa0638340:CDS 45.0%
AAGGAACCAGGAGTTCTTGT+TGG + chr4_3:33769392-33769411 Msa0638340:CDS 45.0%
TGTTCACCAACAAGAACTCC+TGG - chr4_3:33769401-33769420 None:intergenic 45.0%
!! CAATTTGCCTGATTTGGGAC+TGG + chr4_3:33769457-33769476 Msa0638340:CDS 45.0%
GAAAGGAAGGGGAGAACTTT+GGG + chr4_3:33770138-33770157 Msa0638340:intron 45.0%
AAAGGAAGGGGAGAACTTTG+GGG + chr4_3:33770139-33770158 Msa0638340:intron 45.0%
AAGGGGGTTTCATATCTTGG+AGG + chr4_3:33770305-33770324 Msa0638340:intron 45.0%
! TTCGAGAGCAGAGGGTTTTT+GGG - chr4_3:33770342-33770361 None:intergenic 45.0%
! TTTCGAGAGCAGAGGGTTTT+TGG - chr4_3:33770343-33770362 None:intergenic 45.0%
GGGAGAGAGCTTTCAAGAAA+AGG - chr4_3:33770392-33770411 None:intergenic 45.0%
TGGACCATGGTTTGAATTGG+GGG - chr4_3:33771142-33771161 None:intergenic 45.0%
CATGGCCCACAAAACAGTTA+AGG + chr4_3:33772127-33772146 Msa0638340:intron 45.0%
AGGAAGGATACATGGTACCA+AGG + chr4_3:33772557-33772576 Msa0638340:intron 45.0%
AATGGGTCACATTTGGTCCT+TGG - chr4_3:33772577-33772596 None:intergenic 45.0%
! GGGCTTAGAAGCTTGTTTCT+TGG - chr4_3:33772601-33772620 None:intergenic 45.0%
! AAGAGTGCAAATAGAGGGGT+TGG - chr4_3:33772658-33772677 None:intergenic 45.0%
!!! CTTTGACCTTTTTTGGGTGG+TGG - chr4_3:33772817-33772836 None:intergenic 45.0%
!!! CCACTTTGACCTTTTTTGGG+TGG - chr4_3:33772820-33772839 None:intergenic 45.0%
CCACCCAAAAAAGGTCAAAG+TGG + chr4_3:33772817-33772836 Msa0638340:CDS 45.0%
!! GAAAGCGCAACGGCTTTTAT+AGG - chr4_3:33772961-33772980 None:intergenic 45.0%
TAAAAGCCGTTGCGCTTTCA+AGG + chr4_3:33772962-33772981 Msa0638340:CDS 45.0%
AAAAGCCGTTGCGCTTTCAA+GGG + chr4_3:33772963-33772982 Msa0638340:CDS 45.0%
! TCTTTCCCTTGAAAGCGCAA+CGG - chr4_3:33772971-33772990 None:intergenic 45.0%
! GACTTAGTGATTTGTCCGGA+AGG + chr4_3:33773033-33773052 Msa0638340:CDS 45.0%
TCTCTACATGTCGTTCCTTC+CGG - chr4_3:33773051-33773070 None:intergenic 45.0%
GCTTCGTATTAATCGCGACA+GGG - chr4_3:33773128-33773147 None:intergenic 45.0%
TGCTTCGTATTAATCGCGAC+AGG - chr4_3:33773129-33773148 None:intergenic 45.0%
!!! TTTTATGGAACATCGGCTCG+CGG + chr4_3:33773156-33773175 Msa0638340:CDS 45.0%
CCACTGCAAGTCAATTCCAA+AGG - chr4_3:33773258-33773277 None:intergenic 45.0%
!! CCTTTGGAATTGACTTGCAG+TGG + chr4_3:33773255-33773274 Msa0638340:CDS 45.0%
!! TTGGAATTGACTTGCAGTGG+AGG + chr4_3:33773258-33773277 Msa0638340:CDS 45.0%
!! TGGAATTGACTTGCAGTGGA+GGG + chr4_3:33773259-33773278 Msa0638340:CDS 45.0%
GCTATTCTTGCAGGAACAGA+TGG + chr4_3:33773375-33773394 Msa0638340:CDS 45.0%
!!! TTTTCAAAAAAAAAATATAT+TGG + chr4_3:33769873-33769892 Msa0638340:intron 5.0%
!! ATAAAATTTAATTACATTTA+TGG + chr4_3:33771901-33771920 Msa0638340:intron 5.0%
! GCGGGTGAAGGGGTTTTTAA+AGG - chr4_3:33768745-33768764 None:intergenic 50.0%
GGAAAGGCTCCCATGACAAA+GGG - chr4_3:33768894-33768913 None:intergenic 50.0%
TGGAAAGGCTCCCATGACAA+AGG - chr4_3:33768895-33768914 None:intergenic 50.0%
AGTGCGACGAGCATGTAGTA+TGG - chr4_3:33769017-33769036 None:intergenic 50.0%
CCAAGGTCTCGGAGACAAAT+AGG - chr4_3:33769106-33769125 None:intergenic 50.0%
CCTATTTGTCTCCGAGACCT+TGG + chr4_3:33769103-33769122 Msa0638340:CDS 50.0%
GGGGCTAAGGATAAAAGACG+TGG + chr4_3:33769157-33769176 Msa0638340:CDS 50.0%
TTTCTCGGTCAGTGTTGCCT+AGG + chr4_3:33769186-33769205 Msa0638340:CDS 50.0%
! ACATTGTCACGGCTAGTCCA+AGG + chr4_3:33769270-33769289 Msa0638340:CDS 50.0%
!! TGGGAGTAGATAAGGTGCTG+GGG + chr4_3:33769324-33769343 Msa0638340:CDS 50.0%
ACAAAAACAGGGAGGGCAAG+TGG + chr4_3:33769362-33769381 Msa0638340:CDS 50.0%
CAAAAACAGGGAGGGCAAGT+GGG + chr4_3:33769363-33769382 Msa0638340:CDS 50.0%
!! GAGGGCAAGTGGGTTTGTTA+AGG + chr4_3:33769373-33769392 Msa0638340:CDS 50.0%
GGAAAGGAAGGGGAGAACTT+TGG + chr4_3:33770137-33770156 Msa0638340:intron 50.0%
! TCGAGAGCAGAGGGTTTTTG+GGG - chr4_3:33770341-33770360 None:intergenic 50.0%
!!! GAGCAGTTTTGTTAGGCCAC+CGG - chr4_3:33771069-33771088 None:intergenic 50.0%
!!! ACCAGGGGAGCAGTTTTGTT+AGG - chr4_3:33771076-33771095 None:intergenic 50.0%
AAGACAGATGGAGCAGACCA+GGG - chr4_3:33771092-33771111 None:intergenic 50.0%
AAAGACAGATGGAGCAGACC+AGG - chr4_3:33771093-33771112 None:intergenic 50.0%
TGGTCCCCCAATTCAAACCA+TGG + chr4_3:33771135-33771154 Msa0638340:intron 50.0%
TATCGGTGGTTTCCTCCATG+TGG - chr4_3:33772101-33772120 None:intergenic 50.0%
GGGCCATGAAGTTATATCGG+TGG - chr4_3:33772115-33772134 None:intergenic 50.0%
!!! TGACCTTTTTTGGGTGGTGG+TGG - chr4_3:33772814-33772833 None:intergenic 50.0%
AGAGAGAGAGAGCGGGTGAA+GGG - chr4_3:33768756-33768775 None:intergenic 55.0%
!! GAGAAGGGTGCCATCTAGGT+CGG - chr4_3:33768976-33768995 None:intergenic 55.0%
!! ACACGAGAAGGGTGCCATCT+AGG - chr4_3:33768980-33768999 None:intergenic 55.0%
TGCACTTCGCGACACGAGAA+GGG - chr4_3:33768991-33769010 None:intergenic 55.0%
ATGCACTTCGCGACACGAGA+AGG - chr4_3:33768992-33769011 None:intergenic 55.0%
TTGTCACATTCGCGGGGCTA+AGG + chr4_3:33769144-33769163 Msa0638340:CDS 55.0%
GTTGCCTAGGTTCTATGCCG+AGG + chr4_3:33769199-33769218 Msa0638340:CDS 55.0%
ACGTCCTCGGCATAGAACCT+AGG - chr4_3:33769206-33769225 None:intergenic 55.0%
TGTCTCTGGATGCACGTCCT+CGG - chr4_3:33769219-33769238 None:intergenic 55.0%
AGGACGTGCATCCAGAGACA+TGG + chr4_3:33769219-33769238 Msa0638340:CDS 55.0%
! CACGGCTAGTCCAAGGTTGA+TGG + chr4_3:33769277-33769296 Msa0638340:CDS 55.0%
! GGTGCTGGGGACTGAATTGA+TGG + chr4_3:33769337-33769356 Msa0638340:CDS 55.0%
CTGTCTCCCAGTCCCAAATC+AGG - chr4_3:33769467-33769486 None:intergenic 55.0%
! AGCTCTCTTTGGGAGTCTCG+AGG + chr4_3:33770114-33770133 Msa0638340:intron 55.0%
! GCTCTCTTTGGGAGTCTCGA+GGG + chr4_3:33770115-33770134 Msa0638340:intron 55.0%
! CTCTCTTTGGGAGTCTCGAG+GGG + chr4_3:33770116-33770135 Msa0638340:intron 55.0%
TTTGGGAGTCTCGAGGGGAA+AGG + chr4_3:33770121-33770140 Msa0638340:intron 55.0%
GAGTCTCGAGGGGAAAGGAA+GGG + chr4_3:33770126-33770145 Msa0638340:intron 55.0%
AGTCTCGAGGGGAAAGGAAG+GGG + chr4_3:33770127-33770146 Msa0638340:intron 55.0%
!! GAGAGCAGAGGGTTTTTGGG+GGG - chr4_3:33770339-33770358 None:intergenic 55.0%
!! CGAGAGCAGAGGGTTTTTGG+GGG - chr4_3:33770340-33770359 None:intergenic 55.0%
GCCTAACAAAACTGCTCCCC+TGG + chr4_3:33771072-33771091 Msa0638340:intron 55.0%
AGACAGATGGAGCAGACCAG+GGG - chr4_3:33771091-33771110 None:intergenic 55.0%
GTGGTACAAGCTGTACGGCT+TGG - chr4_3:33771697-33771716 None:intergenic 55.0%
!!! CCTTTTTTGGGTGGTGGTGG+AGG - chr4_3:33772811-33772830 None:intergenic 55.0%
CCTCCACCACCACCCAAAAA+AGG + chr4_3:33772808-33772827 Msa0638340:CDS 55.0%
GGCTCGCGGACACAAATTGT+TGG + chr4_3:33773170-33773189 Msa0638340:CDS 55.0%
AGGGTTCTTGGAGGGACTCT+TGG + chr4_3:33773315-33773334 Msa0638340:CDS 55.0%
GAGAGAGAGAGCGGGTGAAG+GGG - chr4_3:33768755-33768774 None:intergenic 60.0%
GAGAGAGAGAGAGCGGGTGA+AGG - chr4_3:33768757-33768776 None:intergenic 60.0%
CTAGGTCGGATGCCACGGTT+TGG - chr4_3:33768962-33768981 None:intergenic 60.0%
ACCGTGGCATCCGACCTAGA+TGG + chr4_3:33768963-33768982 Msa0638340:CDS 60.0%
GCCATCTAGGTCGGATGCCA+CGG - chr4_3:33768967-33768986 None:intergenic 60.0%
ATGCTCGTCGCACTCGAAGC+TGG + chr4_3:33769023-33769042 Msa0638340:CDS 60.0%
GGAGTCTCGAGGGGAAAGGA+AGG + chr4_3:33770125-33770144 Msa0638340:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 33768720 33773966 33768720 ID=Msa0638340;Name=Msa0638340
chr4_3 mRNA 33768720 33773966 33768720 ID=Msa0638340-mRNA-1;Parent=Msa0638340;Name=Msa0638340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=180|1|1|1|1|1|2|541|495
chr4_3 exon 33768720 33769520 33768720 ID=Msa0638340-mRNA-1:exon:7608;Parent=Msa0638340-mRNA-1
chr4_3 exon 33772559 33773966 33772559 ID=Msa0638340-mRNA-1:exon:7609;Parent=Msa0638340-mRNA-1
chr4_3 five_prime_UTR 33768720 33768899 33768720 ID=Msa0638340-mRNA-1:five_prime_utr;Parent=Msa0638340-mRNA-1
chr4_3 CDS 33768900 33769520 33768900 ID=Msa0638340-mRNA-1:cds;Parent=Msa0638340-mRNA-1
chr4_3 CDS 33772559 33773425 33772559 ID=Msa0638340-mRNA-1:cds;Parent=Msa0638340-mRNA-1
chr4_3 three_prime_UTR 33773426 33773966 33773426 ID=Msa0638340-mRNA-1:three_prime_utr;Parent=Msa0638340-mRNA-1
Gene Sequence

>Msa0638340

ATGGGAGCCTTTCCACTTTTCCCACCAATTTTCAAATGTAGCACAAAAGATAGATCAAACCAAACCGTGGCATCCGACCTAGATGGCACCCTTCTCGTGTCGCGAAGTGCATTTCCATACTACATGCTCGTCGCACTCGAAGCTGGAAGCATTCTAAGAGCTTTAATTCTCTTATCCTTAGTCCCTTTCGTATATTTCACGTACCTATTTGTCTCCGAGACCTTGGCAATCAAAACATTAATCTTTGTCACATTCGCGGGGCTAAGGATAAAAGACGTGGAGATTGTTTCTCGGTCAGTGTTGCCTAGGTTCTATGCCGAGGACGTGCATCCAGAGACATGGAAAGTGTTCAATTCGTTCGGGAAACGATACATTGTCACGGCTAGTCCAAGGTTGATGGTTGAGCCATTTGTTAAGACATTTTTGGGAGTAGATAAGGTGCTGGGGACTGAATTGATGGTTACAAAAACAGGGAGGGCAAGTGGGTTTGTTAAGGAACCAGGAGTTCTTGTTGGTGAACACAAGAAAGAGGCAGTTATGAAAGAATTTGGGAGTAACAATTTGCCTGATTTGGGACTGGGAGACAGTGTGACTGACTCTGACTTCATGTCTATTTGCAAGGAAGGATACATGGTACCAAGGACCAAATGTGACCCATTACCAAGAAACAAGCTTCTAAGCCCAATTATTTTTCATGAGGGTAGATTAGTCCAAAAACCAACCCCTCTATTTGCACTCTTAACCTTCTTATGGATGCCAATTGGAATCATACTTTCAATCTTAAGGGTGTATCTCAACATCCCTTTACCTGAAAAAATTGCTTGGTACAATTATAAATTACTTGGAATAAGAGTAATTAGAAAAGGTACACCTCCACCACCACCCAAAAAAGGTCAAAGTGGTGTTCTATTTGTTTGCAACCATAGAACAGTTTTAGATCCAGTTGTTACAGGAGTTGCATTAGGAAGAAAAATAAGTTGTGTAACTTATAGTATAAGTAAATTCACCGAAATAATTTCGCCTATAAAAGCCGTTGCGCTTTCAAGGGAAAGAGATAGAGATGCGGCAAATATAAAGAAATTGCTTGAAGAAGGTGACTTAGTGATTTGTCCGGAAGGAACGACATGTAGAGAACCGTTTCTATTGAGGTTTAGTGCTCTTTTTGCAGAATTAACGGATAGGATTGTCCCTGTCGCGATTAATACGAAGCAAAGTTTGTTTTATGGAACATCGGCTCGCGGACACAAATTGTTGGATCCTTATTTTGTGTTCATGAATCCTATGCCAACTTATGAGATCACTTTCTTGAATCAGTTGCCTTTGGAATTGACTTGCAGTGGAGGGAAATCTTCAATTGAAGTTGCAAATTATATTCAAAGGGTTCTTGGAGGGACTCTTGGATTTGAATGTACCAATTTAACAAGGAAGGATAAGTATGCTATTCTTGCAGGAACAGATGGAATTGTTAGATCTACGAAGAAAGATTAA

Protein sequence

>Msa0638340

MGAFPLFPPIFKCSTKDRSNQTVASDLDGTLLVSRSAFPYYMLVALEAGSILRALILLSLVPFVYFTYLFVSETLAIKTLIFVTFAGLRIKDVEIVSRSVLPRFYAEDVHPETWKVFNSFGKRYIVTASPRLMVEPFVKTFLGVDKVLGTELMVTKTGRASGFVKEPGVLVGEHKKEAVMKEFGSNNLPDLGLGDSVTDSDFMSICKEGYMVPRTKCDPLPRNKLLSPIIFHEGRLVQKPTPLFALLTFLWMPIGIILSILRVYLNIPLPEKIAWYNYKLLGIRVIRKGTPPPPPKKGQSGVLFVCNHRTVLDPVVTGVALGRKISCVTYSISKFTEIISPIKAVALSRERDRDAANIKKLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSLFYGTSARGHKLLDPYFVFMNPMPTYEITFLNQLPLELTCSGGKSSIEVANYIQRVLGGTLGFECTNLTRKDKYAILAGTDGIVRSTKKD*