Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0638340 | XP_013455158.1 | 99.192 | 495 | 4 | 0 | 1 | 495 | 1 | 495 | 0.0 | 996 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0638340 | sp|O80437|GPAT6_ARATH | 79.794 | 485 | 96 | 1 | 7 | 489 | 10 | 494 | 0.0 | 788 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0013310 | Msa0638340 | 0.853209 | 2.779639e-61 | -8.615850e-47 |
Msa0062220 | Msa0638340 | 0.870097 | 1.887161e-66 | -8.615850e-47 |
Msa0608200 | Msa0638340 | 0.833210 | 6.078075e-56 | -8.615850e-47 |
Msa0638340 | Msa0648520 | 0.826493 | 2.631493e-54 | -8.615850e-47 |
Msa0638340 | Msa0667470 | 0.902329 | 1.083150e-78 | -8.615850e-47 |
Msa0638340 | Msa0691050 | 0.833621 | 4.801466e-56 | -8.615850e-47 |
Msa0638340 | Msa1040120 | 0.830328 | 3.123449e-55 | -8.615850e-47 |
Msa0638340 | Msa1212380 | 0.803236 | 3.837963e-49 | -8.615850e-47 |
Msa0638340 | Msa1364470 | -0.807298 | 5.412029e-50 | -8.615850e-47 |
Msa0138970 | Msa0638340 | -0.801259 | 9.797082e-49 | -8.615850e-47 |
Msa0222920 | Msa0638340 | 0.812068 | 5.106845e-51 | -8.615850e-47 |
Msa0260820 | Msa0638340 | -0.818801 | 1.621854e-52 | -8.615850e-47 |
Msa0532550 | Msa0638340 | 0.954809 | 1.276994e-112 | -8.615850e-47 |
Msa0589400 | Msa0638340 | 0.902964 | 5.654535e-79 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0638340 | MtrunA17_Chr4g0005991 | 99.192 | 495 | 4 | 0 | 1 | 495 | 1 | 495 | 0.0 | 996 |
Msa0638340 | MtrunA17_Chr7g0241831 | 84.040 | 495 | 77 | 2 | 1 | 494 | 3 | 496 | 0.0 | 851 |
Msa0638340 | MtrunA17_Chr8g0348781 | 61.914 | 491 | 180 | 5 | 7 | 491 | 10 | 499 | 0.0 | 630 |
Msa0638340 | MtrunA17_Chr1g0170421 | 57.895 | 494 | 200 | 5 | 7 | 494 | 41 | 532 | 0.0 | 589 |
Msa0638340 | MtrunA17_Chr5g0435581 | 51.046 | 478 | 224 | 4 | 21 | 492 | 2 | 475 | 2.49e-164 | 474 |
Msa0638340 | MtrunA17_Chr5g0443341 | 50.713 | 491 | 226 | 7 | 7 | 491 | 51 | 531 | 2.92e-162 | 470 |
Msa0638340 | MtrunA17_Chr3g0096481 | 48.193 | 498 | 233 | 9 | 7 | 493 | 46 | 529 | 2.38e-155 | 452 |
Msa0638340 | MtrunA17_Chr1g0194391 | 43.542 | 480 | 254 | 8 | 17 | 489 | 60 | 529 | 1.90e-127 | 381 |
Msa0638340 | MtrunA17_Chr5g0425071 | 42.300 | 487 | 266 | 8 | 15 | 495 | 10 | 487 | 1.95e-121 | 364 |
Msa0638340 | MtrunA17_Chr3g0096591 | 52.920 | 274 | 122 | 2 | 220 | 489 | 1 | 271 | 7.69e-99 | 298 |
Msa0638340 | MtrunA17_Chr3g0096581 | 40.291 | 206 | 113 | 5 | 8 | 212 | 51 | 247 | 1.15e-41 | 149 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0638340 | AT2G38110.1 | 79.794 | 485 | 96 | 1 | 7 | 489 | 10 | 494 | 0.0 | 788 |
Msa0638340 | AT4G00400.1 | 61.680 | 488 | 181 | 5 | 7 | 491 | 10 | 494 | 0.0 | 603 |
Msa0638340 | AT1G01610.1 | 61.179 | 492 | 184 | 6 | 7 | 494 | 10 | 498 | 0.0 | 595 |
Msa0638340 | AT3G11430.1 | 51.346 | 483 | 213 | 5 | 19 | 489 | 9 | 481 | 8.38e-166 | 478 |
Msa0638340 | AT5G06090.1 | 48.560 | 486 | 222 | 6 | 19 | 489 | 7 | 479 | 8.79e-153 | 445 |
Msa0638340 | AT1G06520.1 | 44.961 | 516 | 248 | 11 | 5 | 490 | 76 | 585 | 3.76e-146 | 431 |
Msa0638340 | AT1G02390.1 | 39.468 | 489 | 276 | 9 | 16 | 490 | 46 | 528 | 1.40e-110 | 338 |
Msa0638340 | AT4G01950.1 | 39.351 | 493 | 269 | 11 | 17 | 492 | 41 | 520 | 7.29e-108 | 331 |
Msa0638340 | AT4G01950.2 | 39.351 | 493 | 269 | 11 | 17 | 492 | 69 | 548 | 2.01e-107 | 330 |
Msa0638340 | AT3G11325.2 | 49.237 | 262 | 100 | 1 | 228 | 489 | 144 | 372 | 1.07e-83 | 264 |
Msa0638340 | AT3G11325.2 | 37.143 | 105 | 66 | 0 | 31 | 135 | 9 | 113 | 2.51e-16 | 81.3 |
Msa0638340 | AT3G11325.1 | 49.237 | 262 | 100 | 1 | 228 | 489 | 141 | 369 | 1.46e-83 | 264 |
Msa0638340 | AT3G11325.1 | 37.143 | 105 | 66 | 0 | 31 | 135 | 6 | 110 | 2.89e-16 | 80.9 |
Find 133 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTATCCTTCCTTGTTAAAT+TGG | 0.158055 | 4_3:-33773349 | None:intergenic |
GAGGCAGTTATGAAAGAATT+TGG | 0.160182 | 4_3:+33769428 | Msa0638340:CDS |
TTGCACTCTTAACCTTCTTA+TGG | 0.235930 | 4_3:+33772668 | Msa0638340:CDS |
CAAACTTATCTGCAAATTAA+TGG | 0.250410 | 4_3:-33773942 | None:intergenic |
GAATTATCGACGGAAATTTC+AGG | 0.258294 | 4_3:-33773589 | None:intergenic |
GAATCATACTTTCAATCTTA+AGG | 0.293063 | 4_3:+33772701 | Msa0638340:CDS |
GAGTAACAATTTGCCTGATT+TGG | 0.303564 | 4_3:+33769451 | Msa0638340:CDS |
AATTATATTCAAAGGGTTCT+TGG | 0.305203 | 4_3:+33773303 | Msa0638340:CDS |
AGAAGCTTGTTTCTTGGTAA+TGG | 0.311340 | 4_3:-33772592 | None:intergenic |
GGTTATACTATATACATATA+TGG | 0.315571 | 4_3:+33773805 | Msa0638340:three_prime_UTR |
CATTAATTTGCAGATAAGTT+TGG | 0.328455 | 4_3:+33773943 | Msa0638340:three_prime_UTR |
GATAAGTATGCTATTCTTGC+AGG | 0.334585 | 4_3:+33773366 | Msa0638340:CDS |
GGGCTTAGAAGCTTGTTTCT+TGG | 0.336364 | 4_3:-33772598 | None:intergenic |
TCTCTACATGTCGTTCCTTC+CGG | 0.339845 | 4_3:-33773048 | None:intergenic |
TTTCTTGAATCAGTTGCCTT+TGG | 0.341998 | 4_3:+33773239 | Msa0638340:CDS |
AGTAACAATTTGCCTGATTT+GGG | 0.342680 | 4_3:+33769452 | Msa0638340:CDS |
AATCATACTTTCAATCTTAA+GGG | 0.343266 | 4_3:+33772702 | Msa0638340:CDS |
TTTGTGCTACATTTGAAAAT+TGG | 0.344058 | 4_3:-33768924 | None:intergenic |
AGGGTTCTTGGAGGGACTCT+TGG | 0.352717 | 4_3:+33773315 | Msa0638340:CDS |
AATGAATTGTATTACAGTTA+TGG | 0.352845 | 4_3:+33773834 | Msa0638340:three_prime_UTR |
GGATTCATGAACACAAAATA+AGG | 0.356896 | 4_3:-33773195 | None:intergenic |
CCAAGGTCTCGGAGACAAAT+AGG | 0.357156 | 4_3:-33769103 | None:intergenic |
GAAGCTTGTTTCTTGGTAAT+GGG | 0.362820 | 4_3:-33772591 | None:intergenic |
TGGAAAGTGTTCAATTCGTT+CGG | 0.372012 | 4_3:+33769239 | Msa0638340:CDS |
ACATCACAAAGATGCACTAT+AGG | 0.372868 | 4_3:-33773779 | None:intergenic |
AGGCAGTTATGAAAGAATTT+GGG | 0.373459 | 4_3:+33769429 | Msa0638340:CDS |
TCTTGGTAATGGGTCACATT+TGG | 0.374038 | 4_3:-33772581 | None:intergenic |
TTGAAAATTGGTGGGAAAAG+TGG | 0.380347 | 4_3:-33768912 | None:intergenic |
TTGAACACTTTCCATGTCTC+TGG | 0.382477 | 4_3:-33769230 | None:intergenic |
GTTGTTACAGGAGTTGCATT+AGG | 0.394796 | 4_3:+33772880 | Msa0638340:CDS |
TAAAAGCCGTTGCGCTTTCA+AGG | 0.395510 | 4_3:+33772962 | Msa0638340:CDS |
CTGGATCTAAAACTGTTCTA+TGG | 0.403705 | 4_3:-33772858 | None:intergenic |
GAGGGCAAGTGGGTTTGTTA+AGG | 0.407100 | 4_3:+33769373 | Msa0638340:CDS |
TGGTACAATTATAAATTACT+TGG | 0.415906 | 4_3:+33772760 | Msa0638340:CDS |
ACCTTCTTATGGATGCCAAT+TGG | 0.419088 | 4_3:+33772679 | Msa0638340:CDS |
GGAAAGTGTTCAATTCGTTC+GGG | 0.425126 | 4_3:+33769240 | Msa0638340:CDS |
AGTGCGACGAGCATGTAGTA+TGG | 0.432920 | 4_3:-33769014 | None:intergenic |
AATGCAACTCCTGTAACAAC+TGG | 0.433295 | 4_3:-33772877 | None:intergenic |
CACGGCTAGTCCAAGGTTGA+TGG | 0.435779 | 4_3:+33769277 | Msa0638340:CDS |
AATGGGTCACATTTGGTCCT+TGG | 0.442068 | 4_3:-33772574 | None:intergenic |
ATTGAAAGTATGATTCCAAT+TGG | 0.443499 | 4_3:-33772694 | None:intergenic |
CTGTCTCCCAGTCCCAAATC+AGG | 0.443748 | 4_3:-33769464 | None:intergenic |
TCAGGCGAAAACGATAAAAC+TGG | 0.446684 | 4_3:-33773571 | None:intergenic |
CAATTTGCCTGATTTGGGAC+TGG | 0.449611 | 4_3:+33769457 | Msa0638340:CDS |
ACACGAGAAGGGTGCCATCT+AGG | 0.454550 | 4_3:-33768977 | None:intergenic |
ATGCTCGTCGCACTCGAAGC+TGG | 0.455449 | 4_3:+33769023 | Msa0638340:CDS |
AAGAGTGCAAATAGAGGGGT+TGG | 0.455638 | 4_3:-33772655 | None:intergenic |
GTAGAGAACCGTTTCTATTG+AGG | 0.458187 | 4_3:+33773064 | Msa0638340:CDS |
ATGGGATTCTTATGCACAAA+TGG | 0.458400 | 4_3:+33773894 | Msa0638340:three_prime_UTR |
TCCAATTGGCATCCATAAGA+AGG | 0.458669 | 4_3:-33772680 | None:intergenic |
CGAAGAAAGATTAAAATTGA+AGG | 0.466335 | 4_3:+33773412 | Msa0638340:exon |
AACTTTGAAATTAAACATCA+TGG | 0.466576 | 4_3:-33773635 | None:intergenic |
AGATGTAACAATGTGGCATA+TGG | 0.467889 | 4_3:+33773875 | Msa0638340:three_prime_UTR |
AATTTGCCTGATTTGGGACT+GGG | 0.468437 | 4_3:+33769458 | Msa0638340:CDS |
AAGGAACCAGGAGTTCTTGT+TGG | 0.472018 | 4_3:+33769392 | Msa0638340:CDS |
TAGTTGATTTATGTTGTTGA+GGG | 0.473744 | 4_3:+33773748 | Msa0638340:three_prime_UTR |
TGCTTCGTATTAATCGCGAC+AGG | 0.478003 | 4_3:-33773126 | None:intergenic |
TTTCTCGGTCAGTGTTGCCT+AGG | 0.478351 | 4_3:+33769186 | Msa0638340:CDS |
CTAGGTCGGATGCCACGGTT+TGG | 0.479842 | 4_3:-33768959 | None:intergenic |
TTGTCACATTCGCGGGGCTA+AGG | 0.481220 | 4_3:+33769144 | Msa0638340:CDS |
GAAATATACGAAAGGGACTA+AGG | 0.490330 | 4_3:-33769075 | None:intergenic |
CCTTTGGAATTGACTTGCAG+TGG | 0.493619 | 4_3:+33773255 | Msa0638340:CDS |
GAGAGAGAGAGCGGGTGAAG+GGG | 0.495630 | 4_3:-33768752 | None:intergenic |
TTAATCTTTGTCACATTCGC+GGG | 0.496943 | 4_3:+33769137 | Msa0638340:CDS |
ATAAAGAAATTGCTTGAAGA+AGG | 0.497977 | 4_3:+33773009 | Msa0638340:CDS |
GGCTCGCGGACACAAATTGT+TGG | 0.498712 | 4_3:+33773170 | Msa0638340:CDS |
TTGTGAGGGAAATATGGAAT+TGG | 0.500040 | 4_3:-33768822 | None:intergenic |
CACATTACAGGAAGGATACA+TGG | 0.503595 | 4_3:+33772549 | Msa0638340:intron |
AGTTGCAAATTATATTCAAA+GGG | 0.504087 | 4_3:+33773296 | Msa0638340:CDS |
AAGTTGCAAATTATATTCAA+AGG | 0.504845 | 4_3:+33773295 | Msa0638340:CDS |
TTTGGGAGTAGATAAGGTGC+TGG | 0.506447 | 4_3:+33769322 | Msa0638340:CDS |
AGTGCATCTTTGTGATGTAA+AGG | 0.507474 | 4_3:+33773784 | Msa0638340:three_prime_UTR |
TTGGGAGTAGATAAGGTGCT+GGG | 0.507686 | 4_3:+33769323 | Msa0638340:CDS |
TGTTCACCAACAAGAACTCC+TGG | 0.509031 | 4_3:-33769398 | None:intergenic |
AAGAAAGTGATCTCATAAGT+TGG | 0.509395 | 4_3:-33773222 | None:intergenic |
GCCATCTAGGTCGGATGCCA+CGG | 0.509743 | 4_3:-33768964 | None:intergenic |
GCTATTCTTGCAGGAACAGA+TGG | 0.510039 | 4_3:+33773375 | Msa0638340:CDS |
GGAATAAGAGTAATTAGAAA+AGG | 0.510705 | 4_3:+33772781 | Msa0638340:CDS |
CCTATTTGTCTCCGAGACCT+TGG | 0.512360 | 4_3:+33769103 | Msa0638340:CDS |
CTAGCTATAGAGATTATAGT+TGG | 0.518502 | 4_3:-33768794 | None:intergenic |
AGGTTAAGAGTGCAAATAGA+GGG | 0.520148 | 4_3:-33772660 | None:intergenic |
GGTGCTGGGGACTGAATTGA+TGG | 0.520652 | 4_3:+33769337 | Msa0638340:CDS |
TAAAGGACGAAAGATGGGTA+TGG | 0.520755 | 4_3:-33768725 | None:intergenic |
AGGTGACTTAGTGATTTGTC+CGG | 0.526292 | 4_3:+33773029 | Msa0638340:CDS |
AAGACGTGGAGATTGTTTCT+CGG | 0.526609 | 4_3:+33769171 | Msa0638340:CDS |
AAGGTTAAGAGTGCAAATAG+AGG | 0.530421 | 4_3:-33772661 | None:intergenic |
TGACTTCATGTCTATTTGCA+AGG | 0.539001 | 4_3:+33769499 | Msa0638340:CDS |
GGAAAGGCTCCCATGACAAA+GGG | 0.539104 | 4_3:-33768891 | None:intergenic |
GTGCTACATTTGAAAATTGG+TGG | 0.542118 | 4_3:-33768921 | None:intergenic |
GCACTAAACCTCAATAGAAA+CGG | 0.544972 | 4_3:-33773072 | None:intergenic |
ATATTCAAAGGGTTCTTGGA+GGG | 0.546066 | 4_3:+33773307 | Msa0638340:CDS |
ATGCACTTCGCGACACGAGA+AGG | 0.548044 | 4_3:-33768989 | None:intergenic |
TGTTGGTGAACACAAGAAAG+AGG | 0.548662 | 4_3:+33769409 | Msa0638340:CDS |
GTAGTTGATTTATGTTGTTG+AGG | 0.551188 | 4_3:+33773747 | Msa0638340:three_prime_UTR |
AGTGGGTTTGTTAAGGAACC+AGG | 0.551989 | 4_3:+33769380 | Msa0638340:CDS |
TGCTACATTTGAAAATTGGT+GGG | 0.553187 | 4_3:-33768920 | None:intergenic |
AATGGCTCAACCATCAACCT+TGG | 0.553342 | 4_3:-33769287 | None:intergenic |
TGTCTCTGGATGCACGTCCT+CGG | 0.553696 | 4_3:-33769216 | None:intergenic |
GGTACGTGAAATATACGAAA+GGG | 0.556590 | 4_3:-33769082 | None:intergenic |
ATGTACCAATTTAACAAGGA+AGG | 0.557734 | 4_3:+33773344 | Msa0638340:CDS |
TATATTCAAAGGGTTCTTGG+AGG | 0.558009 | 4_3:+33773306 | Msa0638340:CDS |
AAAAGCCGTTGCGCTTTCAA+GGG | 0.561930 | 4_3:+33772963 | Msa0638340:CDS |
TGGAATTGACTTGCAGTGGA+GGG | 0.564415 | 4_3:+33773259 | Msa0638340:CDS |
TTGGAATTGACTTGCAGTGG+AGG | 0.574024 | 4_3:+33773258 | Msa0638340:CDS |
ATTAATCTTTGTCACATTCG+CGG | 0.578687 | 4_3:+33769136 | Msa0638340:CDS |
GAAGAAAGATTAAAATTGAA+GGG | 0.579270 | 4_3:+33773413 | Msa0638340:exon |
GTGATCTCATAAGTTGGCAT+AGG | 0.582217 | 4_3:-33773216 | None:intergenic |
TGGAAAGGCTCCCATGACAA+AGG | 0.584665 | 4_3:-33768892 | None:intergenic |
ACCGTGGCATCCGACCTAGA+TGG | 0.591495 | 4_3:+33768963 | Msa0638340:CDS |
GGTTAAGAGTGCAAATAGAG+GGG | 0.592460 | 4_3:-33772659 | None:intergenic |
TGCACTTCGCGACACGAGAA+GGG | 0.596300 | 4_3:-33768988 | None:intergenic |
AGGACGTGCATCCAGAGACA+TGG | 0.604083 | 4_3:+33769219 | Msa0638340:CDS |
TCTTTCCCTTGAAAGCGCAA+CGG | 0.605263 | 4_3:-33772968 | None:intergenic |
AGGTACGTGAAATATACGAA+AGG | 0.608258 | 4_3:-33769083 | None:intergenic |
TCGTCACAAAATATCAAAGA+CGG | 0.613506 | 4_3:+33773536 | Msa0638340:three_prime_UTR |
GAGAAGGGTGCCATCTAGGT+CGG | 0.614645 | 4_3:-33768973 | None:intergenic |
ACATTGTCACGGCTAGTCCA+AGG | 0.617998 | 4_3:+33769270 | Msa0638340:CDS |
GTTGCCTAGGTTCTATGCCG+AGG | 0.628644 | 4_3:+33769199 | Msa0638340:CDS |
GATGTAACAATGTGGCATAT+GGG | 0.632032 | 4_3:+33773876 | Msa0638340:three_prime_UTR |
GCTTCGTATTAATCGCGACA+GGG | 0.633339 | 4_3:-33773125 | None:intergenic |
CCACTGCAAGTCAATTCCAA+AGG | 0.642771 | 4_3:-33773255 | None:intergenic |
GACTTAGTGATTTGTCCGGA+AGG | 0.655073 | 4_3:+33773033 | Msa0638340:CDS |
ACGTCCTCGGCATAGAACCT+AGG | 0.656526 | 4_3:-33769203 | None:intergenic |
AATTGGTGGGAAAAGTGGAA+AGG | 0.657733 | 4_3:-33768907 | None:intergenic |
TTGAATGTACCAATTTAACA+AGG | 0.660163 | 4_3:+33773340 | Msa0638340:CDS |
TGGGAGTAGATAAGGTGCTG+GGG | 0.665648 | 4_3:+33769324 | Msa0638340:CDS |
TAATCTTTGTCACATTCGCG+GGG | 0.673980 | 4_3:+33769138 | Msa0638340:CDS |
AGGAAGGATACATGGTACCA+AGG | 0.684832 | 4_3:+33772557 | Msa0638340:intron |
CGGGAAACGATACATTGTCA+CGG | 0.691995 | 4_3:+33769259 | Msa0638340:CDS |
AGATAGATCAAACCAAACCG+TGG | 0.705896 | 4_3:+33768947 | Msa0638340:CDS |
GGGGCTAAGGATAAAAGACG+TGG | 0.717767 | 4_3:+33769157 | Msa0638340:CDS |
AAGGGAAAGAGATAGAGATG+CGG | 0.731861 | 4_3:+33772981 | Msa0638340:CDS |
CTGATTGAGATGTAACAATG+TGG | 0.770996 | 4_3:+33773868 | Msa0638340:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGAATGTTTTATTAATTAA+TGG | + | chr4_3:33769719-33769738 | Msa0638340:intron | 10.0% |
!! | ATAACAAAAATATATATGAA+TGG | - | chr4_3:33769978-33769997 | None:intergenic | 10.0% |
!! | TGATGATTATTAAATTATAT+CGG | + | chr4_3:33770937-33770956 | Msa0638340:intron | 10.0% |
!! | AAAAATAAAAATACATAGTT+AGG | - | chr4_3:33772036-33772055 | None:intergenic | 10.0% |
!! | AACTAACACATTATATAATT+TGG | - | chr4_3:33769594-33769613 | None:intergenic | 15.0% |
!!! | TTATATAATGTGTTAGTTTA+TGG | + | chr4_3:33769596-33769615 | Msa0638340:intron | 15.0% |
!! | TAATAGACTATAATTTAGAA+TGG | + | chr4_3:33769797-33769816 | Msa0638340:intron | 15.0% |
!! | CAAAAACATGATAAATAAAT+AGG | - | chr4_3:33769952-33769971 | None:intergenic | 15.0% |
!!! | TTTTTTTTTCAATCTAACTT+AGG | + | chr4_3:33770485-33770504 | Msa0638340:intron | 15.0% |
!!! | GATTTTTTTTTTTTTTGAAG+AGG | - | chr4_3:33771503-33771522 | None:intergenic | 15.0% |
!!! | ATTTTCATACATTTTTTATG+TGG | - | chr4_3:33771716-33771735 | None:intergenic | 15.0% |
!!! | GATTTTTTTTTTTCTTCTAA+TGG | + | chr4_3:33772274-33772293 | Msa0638340:intron | 15.0% |
!!! | TTTTCATCTGTAATTTAATT+TGG | - | chr4_3:33773495-33773514 | None:intergenic | 15.0% |
!! | TTAAAAAAATGAATTATCGA+CGG | - | chr4_3:33773602-33773621 | None:intergenic | 15.0% |
!!! | GTACATAATATGTTATTTTT+AGG | - | chr4_3:33773705-33773724 | None:intergenic | 15.0% |
!! | TGACAACTAAAAAATTATAC+TGG | - | chr4_3:33770279-33770298 | None:intergenic | 20.0% |
!!! | TTTTTAGTTGTCACAAATTA+AGG | + | chr4_3:33770286-33770305 | Msa0638340:intron | 20.0% |
!!! | TTTTAGTTGTCACAAATTAA+GGG | + | chr4_3:33770287-33770306 | Msa0638340:intron | 20.0% |
!!! | AAGTTTTAGGTGAAAAAAAT+AGG | - | chr4_3:33770546-33770565 | None:intergenic | 20.0% |
!!! | TTTTTGTAGATGTGATATTA+GGG | + | chr4_3:33770608-33770627 | Msa0638340:intron | 20.0% |
!! | GTAAATTGAGAAATCAAAAT+AGG | - | chr4_3:33770665-33770684 | None:intergenic | 20.0% |
!!! | TCTTTTTCAAATTTCTGTTT+TGG | + | chr4_3:33770845-33770864 | Msa0638340:intron | 20.0% |
!!! | AACTTTAGAGAACAAAAAAA+TGG | - | chr4_3:33771162-33771181 | None:intergenic | 20.0% |
!!! | TATAAAGCATCAATAAAGTT+AGG | - | chr4_3:33771190-33771209 | None:intergenic | 20.0% |
!! | TTTCTTCTTCTGTATATTAT+TGG | - | chr4_3:33771353-33771372 | None:intergenic | 20.0% |
!! | CAATTATAAAATCAGTTCTA+GGG | + | chr4_3:33771396-33771415 | Msa0638340:intron | 20.0% |
!!! | TTTTTTTTTTTGAAGAGGAT+TGG | - | chr4_3:33771498-33771517 | None:intergenic | 20.0% |
!! | AATAAAATTTAGGAAGTCTA+GGG | - | chr4_3:33771781-33771800 | None:intergenic | 20.0% |
!! | AAATAAAATTTAGGAAGTCT+AGG | - | chr4_3:33771782-33771801 | None:intergenic | 20.0% |
!! | AACAAGGACAAATAAAATTT+AGG | - | chr4_3:33771791-33771810 | None:intergenic | 20.0% |
!! | AGAAAAGAAAAAAAAGAACA+AGG | - | chr4_3:33771807-33771826 | None:intergenic | 20.0% |
!! | TTATGATAACTTTATGAGTT+TGG | - | chr4_3:33772004-33772023 | None:intergenic | 20.0% |
!! | AGAAATAATTAGACTATGTT+TGG | - | chr4_3:33772529-33772548 | None:intergenic | 20.0% |
!! | TGGTACAATTATAAATTACT+TGG | + | chr4_3:33772760-33772779 | Msa0638340:CDS | 20.0% |
!!! | TTTTATAGGCGAAATTATTT+CGG | - | chr4_3:33772947-33772966 | None:intergenic | 20.0% |
!! | AAGTTGCAAATTATATTCAA+AGG | + | chr4_3:33773295-33773314 | Msa0638340:CDS | 20.0% |
!! | AGTTGCAAATTATATTCAAA+GGG | + | chr4_3:33773296-33773315 | Msa0638340:CDS | 20.0% |
!! | GAAGAAAGATTAAAATTGAA+GGG | + | chr4_3:33773413-33773432 | Msa0638340:exon | 20.0% |
!!! | AACTTTGAAATTAAACATCA+TGG | - | chr4_3:33773638-33773657 | None:intergenic | 20.0% |
!! | GGTTATACTATATACATATA+TGG | + | chr4_3:33773805-33773824 | Msa0638340:three_prime_UTR | 20.0% |
!! | AATGAATTGTATTACAGTTA+TGG | + | chr4_3:33773834-33773853 | Msa0638340:three_prime_UTR | 20.0% |
!! | AAATTAATGGCAAAAAAACA+AGG | - | chr4_3:33773932-33773951 | None:intergenic | 20.0% |
!!! | AAGGGAGAAAATTTTTTAGA+AGG | - | chr4_3:33768876-33768895 | None:intergenic | 25.0% |
! | TTTGTGCTACATTTGAAAAT+TGG | - | chr4_3:33768927-33768946 | None:intergenic | 25.0% |
!!! | CCATTTGTTAAGACATTTTT+GGG | + | chr4_3:33769305-33769324 | Msa0638340:CDS | 25.0% |
!! | AATTGATGGTTACAAAAACA+GGG | + | chr4_3:33769351-33769370 | Msa0638340:CDS | 25.0% |
!! | ATTTGTGAATGTCGATTAAA+AGG | - | chr4_3:33769650-33769669 | None:intergenic | 25.0% |
!! | AGACTATAATTTAGAATGGA+TGG | + | chr4_3:33769801-33769820 | Msa0638340:intron | 25.0% |
! | ATTAAATTGACTACAGAAAC+TGG | - | chr4_3:33769899-33769918 | None:intergenic | 25.0% |
! | CAGATAGATATGGATATATT+AGG | - | chr4_3:33769929-33769948 | None:intergenic | 25.0% |
! | AATAAATAGGCAGATAGATA+TGG | - | chr4_3:33769939-33769958 | None:intergenic | 25.0% |
!! | AATTATACTGGAGGATATTT+TGG | - | chr4_3:33770267-33770286 | None:intergenic | 25.0% |
! | CAACTAAAAAATTATACTGG+AGG | - | chr4_3:33770276-33770295 | None:intergenic | 25.0% |
! | TTTAGTTGTCACAAATTAAG+GGG | + | chr4_3:33770288-33770307 | Msa0638340:intron | 25.0% |
!! | AGTCATATTTCACAAGTTTT+AGG | - | chr4_3:33770559-33770578 | None:intergenic | 25.0% |
!! | GTTTTTGTAGATGTGATATT+AGG | + | chr4_3:33770607-33770626 | Msa0638340:intron | 25.0% |
! | ATGTGATATTAGGGATTAAA+AGG | + | chr4_3:33770617-33770636 | Msa0638340:intron | 25.0% |
! | TGTGATATTAGGGATTAAAA+GGG | + | chr4_3:33770618-33770637 | Msa0638340:intron | 25.0% |
! | ATTGAGAAATCAAAATAGGA+AGG | - | chr4_3:33770661-33770680 | None:intergenic | 25.0% |
!!! | TTTCAAATTTCTGTTTTGGA+TGG | + | chr4_3:33770849-33770868 | Msa0638340:intron | 25.0% |
!!! | TTCAAATTTCTGTTTTGGAT+GGG | + | chr4_3:33770850-33770869 | Msa0638340:intron | 25.0% |
! | AGACATAAATTTAAGGAAAG+AGG | - | chr4_3:33771027-33771046 | None:intergenic | 25.0% |
! | CGAAAACAGACATAAATTTA+AGG | - | chr4_3:33771034-33771053 | None:intergenic | 25.0% |
!! | GTTTTCGTGTATAATTTTTC+CGG | + | chr4_3:33771047-33771066 | Msa0638340:intron | 25.0% |
! | TAAAGATAGAAAAAGACAGA+TGG | - | chr4_3:33771104-33771123 | None:intergenic | 25.0% |
! | CAATAAACACGATATTGATA+TGG | + | chr4_3:33771242-33771261 | Msa0638340:intron | 25.0% |
! | AGAAGAAAAAAATCCCTAAT+TGG | + | chr4_3:33771365-33771384 | Msa0638340:intron | 25.0% |
! | AATTGGAAGATATCCAATTA+GGG | - | chr4_3:33771381-33771400 | None:intergenic | 25.0% |
! | TAATTGGAAGATATCCAATT+AGG | - | chr4_3:33771382-33771401 | None:intergenic | 25.0% |
!!! | CCTAGAACTGATTTTATAAT+TGG | - | chr4_3:33771398-33771417 | None:intergenic | 25.0% |
! | CCAATTATAAAATCAGTTCT+AGG | + | chr4_3:33771395-33771414 | Msa0638340:intron | 25.0% |
!!! | ATTGACTAGTATTTTAGCTT+GGG | - | chr4_3:33771427-33771446 | None:intergenic | 25.0% |
!!! | AATTGACTAGTATTTTAGCT+TGG | - | chr4_3:33771428-33771447 | None:intergenic | 25.0% |
! | GGATATAGAGATGTTAAAAT+GGG | - | chr4_3:33771477-33771496 | None:intergenic | 25.0% |
! | TGGATATAGAGATGTTAAAA+TGG | - | chr4_3:33771478-33771497 | None:intergenic | 25.0% |
! | ATAAAATTTAGGAAGTCTAG+GGG | - | chr4_3:33771780-33771799 | None:intergenic | 25.0% |
!! | CATTTTATCATACTGTCATA+TGG | - | chr4_3:33771950-33771969 | None:intergenic | 25.0% |
! | AAATTATCAGTTCATAGACT+AGG | - | chr4_3:33772078-33772097 | None:intergenic | 25.0% |
!!! | AAGTCTTTTAGTTGAACTTA+TGG | + | chr4_3:33772312-33772331 | Msa0638340:intron | 25.0% |
!! | CTTATTTCCATAAGCTTTTT+AGG | + | chr4_3:33772370-33772389 | Msa0638340:intron | 25.0% |
! | AAGTTATCCTAAAAAGCTTA+TGG | - | chr4_3:33772380-33772399 | None:intergenic | 25.0% |
!! | CTAATTATTTCTCACATTAC+AGG | + | chr4_3:33772537-33772556 | Msa0638340:intron | 25.0% |
! | TACCCTCATGAAAAATAATT+GGG | - | chr4_3:33772621-33772640 | None:intergenic | 25.0% |
!! | ATTGAAAGTATGATTCCAAT+TGG | - | chr4_3:33772697-33772716 | None:intergenic | 25.0% |
!!! | AAGCAATTTTTTCAGGTAAA+GGG | - | chr4_3:33772741-33772760 | None:intergenic | 25.0% |
! | GGAATAAGAGTAATTAGAAA+AGG | + | chr4_3:33772781-33772800 | Msa0638340:CDS | 25.0% |
! | ATAAAGAAATTGCTTGAAGA+AGG | + | chr4_3:33773009-33773028 | Msa0638340:CDS | 25.0% |
!!! | AAGTTTGTTTTATGGAACAT+CGG | + | chr4_3:33773149-33773168 | Msa0638340:CDS | 25.0% |
! | AATTATATTCAAAGGGTTCT+TGG | + | chr4_3:33773303-33773322 | Msa0638340:CDS | 25.0% |
! | TTGAATGTACCAATTTAACA+AGG | + | chr4_3:33773340-33773359 | Msa0638340:CDS | 25.0% |
! | CGAAGAAAGATTAAAATTGA+AGG | + | chr4_3:33773412-33773431 | Msa0638340:exon | 25.0% |
!! | TAGTTGATTTATGTTGTTGA+GGG | + | chr4_3:33773748-33773767 | Msa0638340:three_prime_UTR | 25.0% |
! | CAAACTTATCTGCAAATTAA+TGG | - | chr4_3:33773945-33773964 | None:intergenic | 25.0% |
!!! | CATTAATTTGCAGATAAGTT+TGG | + | chr4_3:33773943-33773962 | Msa0638340:three_prime_UTR | 25.0% |
!! | GTTTTTAAAGGACGAAAGAT+GGG | - | chr4_3:33768733-33768752 | None:intergenic | 30.0% |
CTAGCTATAGAGATTATAGT+TGG | - | chr4_3:33768797-33768816 | None:intergenic | 30.0% | |
! | TTTGCTAAGATGTTTTGTGA+GGG | - | chr4_3:33768839-33768858 | None:intergenic | 30.0% |
! | AAAATTTTCTCCCTTTGTCA+TGG | + | chr4_3:33768881-33768900 | Msa0638340:exon | 30.0% |
! | AAATTTTCTCCCTTTGTCAT+GGG | + | chr4_3:33768882-33768901 | Msa0638340:exon | 30.0% |
TGCTACATTTGAAAATTGGT+GGG | - | chr4_3:33768923-33768942 | None:intergenic | 30.0% | |
!!! | GATTAATGTTTTGATTGCCA+AGG | - | chr4_3:33769123-33769142 | None:intergenic | 30.0% |
ATTAATCTTTGTCACATTCG+CGG | + | chr4_3:33769136-33769155 | Msa0638340:CDS | 30.0% | |
!! | GCCATTTGTTAAGACATTTT+TGG | + | chr4_3:33769304-33769323 | Msa0638340:CDS | 30.0% |
CCCAAAAATGTCTTAACAAA+TGG | - | chr4_3:33769308-33769327 | None:intergenic | 30.0% | |
! | GAATTGATGGTTACAAAAAC+AGG | + | chr4_3:33769350-33769369 | Msa0638340:CDS | 30.0% |
AGGCAGTTATGAAAGAATTT+GGG | + | chr4_3:33769429-33769448 | Msa0638340:CDS | 30.0% | |
AGTAACAATTTGCCTGATTT+GGG | + | chr4_3:33769452-33769471 | Msa0638340:CDS | 30.0% | |
ACAATAACTAAGCTCTCTTT+GGG | + | chr4_3:33770104-33770123 | Msa0638340:intron | 30.0% | |
TTAGTTGTCACAAATTAAGG+GGG | + | chr4_3:33770289-33770308 | Msa0638340:intron | 30.0% | |
TCTGTTTGAGAGTTTAAAAG+GGG | - | chr4_3:33770412-33770431 | None:intergenic | 30.0% | |
GTCTGTTTGAGAGTTTAAAA+GGG | - | chr4_3:33770413-33770432 | None:intergenic | 30.0% | |
!!! | TGACTTTTCTGAAACAATTC+AGG | + | chr4_3:33770574-33770593 | Msa0638340:intron | 30.0% |
ACCCAACATCAAAAAATTAG+GGG | - | chr4_3:33770963-33770982 | None:intergenic | 30.0% | |
CACCCAACATCAAAAAATTA+GGG | - | chr4_3:33770964-33770983 | None:intergenic | 30.0% | |
TCACCCAACATCAAAAAATT+AGG | - | chr4_3:33770965-33770984 | None:intergenic | 30.0% | |
CATAAATTTAAGGAAAGAGG+AGG | - | chr4_3:33771024-33771043 | None:intergenic | 30.0% | |
!! | ATTGAGTTGAGTTGGATTAT+AGG | + | chr4_3:33771445-33771464 | Msa0638340:intron | 30.0% |
!! | TTGAGTTGAGTTGGATTATA+GGG | + | chr4_3:33771446-33771465 | Msa0638340:intron | 30.0% |
ACTACTACATAGTAATAGGT+TGG | - | chr4_3:33771667-33771686 | None:intergenic | 30.0% | |
GAGTACTACTACATAGTAAT+AGG | - | chr4_3:33771671-33771690 | None:intergenic | 30.0% | |
TTTCTAGATATCACAGATTC+AGG | + | chr4_3:33771822-33771841 | Msa0638340:intron | 30.0% | |
TTCTAGATATCACAGATTCA+GGG | + | chr4_3:33771823-33771842 | Msa0638340:intron | 30.0% | |
! | CATGTAGCATGATTTCTTTT+AGG | + | chr4_3:33771872-33771891 | Msa0638340:intron | 30.0% |
ATGAACTGATAATTTCCACA+TGG | + | chr4_3:33772083-33772102 | Msa0638340:intron | 30.0% | |
! | GAAAACCTTAACTGTTTTGT+GGG | - | chr4_3:33772135-33772154 | None:intergenic | 30.0% |
! | AGAAAACCTTAACTGTTTTG+TGG | - | chr4_3:33772136-33772155 | None:intergenic | 30.0% |
! | CAAAACAGTTAAGGTTTTCT+AGG | + | chr4_3:33772136-33772155 | Msa0638340:intron | 30.0% |
! | TTATTTCTCACATTACAGGA+AGG | + | chr4_3:33772541-33772560 | Msa0638340:intron | 30.0% |
!! | AAGCCCAATTATTTTTCATG+AGG | + | chr4_3:33772615-33772634 | Msa0638340:CDS | 30.0% |
!! | AGCCCAATTATTTTTCATGA+GGG | + | chr4_3:33772616-33772635 | Msa0638340:CDS | 30.0% |
CTACCCTCATGAAAAATAAT+TGG | - | chr4_3:33772622-33772641 | None:intergenic | 30.0% | |
!!! | CAAGCAATTTTTTCAGGTAA+AGG | - | chr4_3:33772742-33772761 | None:intergenic | 30.0% |
CTTTACCTGAAAAAATTGCT+TGG | + | chr4_3:33772740-33772759 | Msa0638340:CDS | 30.0% | |
!!! | TTGTACCAAGCAATTTTTTC+AGG | - | chr4_3:33772748-33772767 | None:intergenic | 30.0% |
! | TGCTCTTTTTGCAGAATTAA+CGG | + | chr4_3:33773092-33773111 | Msa0638340:CDS | 30.0% |
!! | TTTTTGCAGAATTAACGGAT+AGG | + | chr4_3:33773097-33773116 | Msa0638340:CDS | 30.0% |
!!! | ACGAAGCAAAGTTTGTTTTA+TGG | + | chr4_3:33773141-33773160 | Msa0638340:CDS | 30.0% |
GGATTCATGAACACAAAATA+AGG | - | chr4_3:33773198-33773217 | None:intergenic | 30.0% | |
AAGAAAGTGATCTCATAAGT+TGG | - | chr4_3:33773225-33773244 | None:intergenic | 30.0% | |
ATGTACCAATTTAACAAGGA+AGG | + | chr4_3:33773344-33773363 | Msa0638340:CDS | 30.0% | |
CTTATCCTTCCTTGTTAAAT+TGG | - | chr4_3:33773352-33773371 | None:intergenic | 30.0% | |
TCGTCACAAAATATCAAAGA+CGG | + | chr4_3:33773536-33773555 | Msa0638340:three_prime_UTR | 30.0% | |
! | GTAGTTGATTTATGTTGTTG+AGG | + | chr4_3:33773747-33773766 | Msa0638340:three_prime_UTR | 30.0% |
!! | GGTTTTTAAAGGACGAAAGA+TGG | - | chr4_3:33768734-33768753 | None:intergenic | 35.0% |
TTGTGAGGGAAATATGGAAT+TGG | - | chr4_3:33768825-33768844 | None:intergenic | 35.0% | |
! | GATGTTTTGTGAGGGAAATA+TGG | - | chr4_3:33768831-33768850 | None:intergenic | 35.0% |
!! | GTTTGCTAAGATGTTTTGTG+AGG | - | chr4_3:33768840-33768859 | None:intergenic | 35.0% |
TTGAAAATTGGTGGGAAAAG+TGG | - | chr4_3:33768915-33768934 | None:intergenic | 35.0% | |
GTGCTACATTTGAAAATTGG+TGG | - | chr4_3:33768924-33768943 | None:intergenic | 35.0% | |
GAAATATACGAAAGGGACTA+AGG | - | chr4_3:33769078-33769097 | None:intergenic | 35.0% | |
GGTACGTGAAATATACGAAA+GGG | - | chr4_3:33769085-33769104 | None:intergenic | 35.0% | |
AGGTACGTGAAATATACGAA+AGG | - | chr4_3:33769086-33769105 | None:intergenic | 35.0% | |
TTAATCTTTGTCACATTCGC+GGG | + | chr4_3:33769137-33769156 | Msa0638340:CDS | 35.0% | |
!! | TGGAAAGTGTTCAATTCGTT+CGG | + | chr4_3:33769239-33769258 | Msa0638340:CDS | 35.0% |
!! | GACATTTTTGGGAGTAGATA+AGG | + | chr4_3:33769316-33769335 | Msa0638340:CDS | 35.0% |
GAGGCAGTTATGAAAGAATT+TGG | + | chr4_3:33769428-33769447 | Msa0638340:CDS | 35.0% | |
GAGTAACAATTTGCCTGATT+TGG | + | chr4_3:33769451-33769470 | Msa0638340:CDS | 35.0% | |
TGACTTCATGTCTATTTGCA+AGG | + | chr4_3:33769499-33769518 | Msa0638340:CDS | 35.0% | |
CACAATAACTAAGCTCTCTT+TGG | + | chr4_3:33770103-33770122 | Msa0638340:intron | 35.0% | |
!! | GAGGATATTTTGGATGGTTT+GGG | - | chr4_3:33770257-33770276 | None:intergenic | 35.0% |
!! | ATACTGGAGGATATTTTGGA+TGG | - | chr4_3:33770263-33770282 | None:intergenic | 35.0% |
ATTAAGGGGGTTTCATATCT+TGG | + | chr4_3:33770302-33770321 | Msa0638340:intron | 35.0% | |
CAAGAAAAGGAAGGATGAAA+TGG | - | chr4_3:33770379-33770398 | None:intergenic | 35.0% | |
GGTCTGTTTGAGAGTTTAAA+AGG | - | chr4_3:33770414-33770433 | None:intergenic | 35.0% | |
GCGCACATACACATATATAT+GGG | - | chr4_3:33770790-33770809 | None:intergenic | 35.0% | |
TGCGCACATACACATATATA+TGG | - | chr4_3:33770791-33770810 | None:intergenic | 35.0% | |
!!! | GCCCCTAATTTTTTGATGTT+GGG | + | chr4_3:33770959-33770978 | Msa0638340:intron | 35.0% |
! | TTCGTGTATAATTTTTCCGG+TGG | + | chr4_3:33771050-33771069 | Msa0638340:intron | 35.0% |
CTATCTTTACTAGCTCGTAT+TGG | + | chr4_3:33771115-33771134 | Msa0638340:intron | 35.0% | |
AATGGACCATGGTTTGAATT+GGG | - | chr4_3:33771144-33771163 | None:intergenic | 35.0% | |
AAATGGACCATGGTTTGAAT+TGG | - | chr4_3:33771145-33771164 | None:intergenic | 35.0% | |
GAGAACAAAAAAATGGACCA+TGG | - | chr4_3:33771155-33771174 | None:intergenic | 35.0% | |
!! | TGTATGTGTCACTTCTTCAT+AGG | - | chr4_3:33771218-33771237 | None:intergenic | 35.0% |
ATGAAGAAGTGACACATACA+CGG | + | chr4_3:33771218-33771237 | Msa0638340:intron | 35.0% | |
!! | TTCAATCAAAAGTATCGTGC+CGG | + | chr4_3:33771313-33771332 | Msa0638340:intron | 35.0% |
! | ATTGGTTTACTCTGTTGTAC+CGG | - | chr4_3:33771335-33771354 | None:intergenic | 35.0% |
!! | ACTAGTCAATTGAGTTGAGT+TGG | + | chr4_3:33771437-33771456 | Msa0638340:intron | 35.0% |
GGTTGGACATGAGAAATTTA+TGG | - | chr4_3:33771650-33771669 | None:intergenic | 35.0% | |
TTTATGTGGTACAAGCTGTA+CGG | - | chr4_3:33771702-33771721 | None:intergenic | 35.0% | |
ACAAGGATTGTGCTTTCTTA+TGG | - | chr4_3:33771751-33771770 | None:intergenic | 35.0% | |
AACTGATAATTTCCACATGG+AGG | + | chr4_3:33772086-33772105 | Msa0638340:intron | 35.0% | |
AAACCACCGATATAACTTCA+TGG | + | chr4_3:33772109-33772128 | Msa0638340:intron | 35.0% | |
! | GAAGCTTGTTTCTTGGTAAT+GGG | - | chr4_3:33772594-33772613 | None:intergenic | 35.0% |
! | AGAAGCTTGTTTCTTGGTAA+TGG | - | chr4_3:33772595-33772614 | None:intergenic | 35.0% |
! | AGGTTAAGAGTGCAAATAGA+GGG | - | chr4_3:33772663-33772682 | None:intergenic | 35.0% |
! | AAGGTTAAGAGTGCAAATAG+AGG | - | chr4_3:33772664-33772683 | None:intergenic | 35.0% |
TTGCACTCTTAACCTTCTTA+TGG | + | chr4_3:33772668-33772687 | Msa0638340:CDS | 35.0% | |
!!! | ACACCACTTTGACCTTTTTT+GGG | - | chr4_3:33772823-33772842 | None:intergenic | 35.0% |
!!! | AACACCACTTTGACCTTTTT+TGG | - | chr4_3:33772824-33772843 | None:intergenic | 35.0% |
! | CTGGATCTAAAACTGTTCTA+TGG | - | chr4_3:33772861-33772880 | None:intergenic | 35.0% |
!! | GTTTTAGATCCAGTTGTTAC+AGG | + | chr4_3:33772868-33772887 | Msa0638340:CDS | 35.0% |
GCACTAAACCTCAATAGAAA+CGG | - | chr4_3:33773075-33773094 | None:intergenic | 35.0% | |
TTTCTTGAATCAGTTGCCTT+TGG | + | chr4_3:33773239-33773258 | Msa0638340:CDS | 35.0% | |
TATATTCAAAGGGTTCTTGG+AGG | + | chr4_3:33773306-33773325 | Msa0638340:CDS | 35.0% | |
ATATTCAAAGGGTTCTTGGA+GGG | + | chr4_3:33773307-33773326 | Msa0638340:CDS | 35.0% | |
GATAAGTATGCTATTCTTGC+AGG | + | chr4_3:33773366-33773385 | Msa0638340:CDS | 35.0% | |
GAATTATCGACGGAAATTTC+AGG | - | chr4_3:33773592-33773611 | None:intergenic | 35.0% | |
ACATCACAAAGATGCACTAT+AGG | - | chr4_3:33773782-33773801 | None:intergenic | 35.0% | |
AGTGCATCTTTGTGATGTAA+AGG | + | chr4_3:33773784-33773803 | Msa0638340:three_prime_UTR | 35.0% | |
CTGATTGAGATGTAACAATG+TGG | + | chr4_3:33773868-33773887 | Msa0638340:three_prime_UTR | 35.0% | |
AGATGTAACAATGTGGCATA+TGG | + | chr4_3:33773875-33773894 | Msa0638340:three_prime_UTR | 35.0% | |
GATGTAACAATGTGGCATAT+GGG | + | chr4_3:33773876-33773895 | Msa0638340:three_prime_UTR | 35.0% | |
ATGGGATTCTTATGCACAAA+TGG | + | chr4_3:33773894-33773913 | Msa0638340:three_prime_UTR | 35.0% | |
TAAAGGACGAAAGATGGGTA+TGG | - | chr4_3:33768728-33768747 | None:intergenic | 40.0% | |
TTATGATGAGAGAGAGAGAG+CGG | - | chr4_3:33768764-33768783 | None:intergenic | 40.0% | |
AATTGGTGGGAAAAGTGGAA+AGG | - | chr4_3:33768910-33768929 | None:intergenic | 40.0% | |
AGATAGATCAAACCAAACCG+TGG | + | chr4_3:33768947-33768966 | Msa0638340:CDS | 40.0% | |
!!! | TGTTTTGATTGCCAAGGTCT+CGG | - | chr4_3:33769117-33769136 | None:intergenic | 40.0% |
TAATCTTTGTCACATTCGCG+GGG | + | chr4_3:33769138-33769157 | Msa0638340:CDS | 40.0% | |
! | AAGACGTGGAGATTGTTTCT+CGG | + | chr4_3:33769171-33769190 | Msa0638340:CDS | 40.0% |
TTGAACACTTTCCATGTCTC+TGG | - | chr4_3:33769233-33769252 | None:intergenic | 40.0% | |
!! | GGAAAGTGTTCAATTCGTTC+GGG | + | chr4_3:33769240-33769259 | Msa0638340:CDS | 40.0% |
TGATGGTTACAAAAACAGGG+AGG | + | chr4_3:33769354-33769373 | Msa0638340:CDS | 40.0% | |
GATGGTTACAAAAACAGGGA+GGG | + | chr4_3:33769355-33769374 | Msa0638340:CDS | 40.0% | |
! | TGTTGGTGAACACAAGAAAG+AGG | + | chr4_3:33769409-33769428 | Msa0638340:CDS | 40.0% |
!! | AATTTGCCTGATTTGGGACT+GGG | + | chr4_3:33769458-33769477 | Msa0638340:CDS | 40.0% |
CTAGATCCTCTTGTTACACA+TGG | + | chr4_3:33769675-33769694 | Msa0638340:intron | 40.0% | |
CATGTTCCATGTGTAACAAG+AGG | - | chr4_3:33769684-33769703 | None:intergenic | 40.0% | |
! | TTTGGATGGTTTGGGAGATT+CGG | - | chr4_3:33770249-33770268 | None:intergenic | 40.0% |
!! | GGAGGATATTTTGGATGGTT+TGG | - | chr4_3:33770258-33770277 | None:intergenic | 40.0% |
TAGATGATTTCGAGAGCAGA+GGG | - | chr4_3:33770350-33770369 | None:intergenic | 40.0% | |
ATAGATGATTTCGAGAGCAG+AGG | - | chr4_3:33770351-33770370 | None:intergenic | 40.0% | |
GAGAGCTTTCAAGAAAAGGA+AGG | - | chr4_3:33770388-33770407 | None:intergenic | 40.0% | |
GACTCTAGTATGAACACTTC+AGG | - | chr4_3:33770435-33770454 | None:intergenic | 40.0% | |
!!! | GGCCCCTAATTTTTTGATGT+TGG | + | chr4_3:33770958-33770977 | Msa0638340:intron | 40.0% |
ATGGACCATGGTTTGAATTG+GGG | - | chr4_3:33771143-33771162 | None:intergenic | 40.0% | |
!! | ATGTGTCACTTCTTCATAGG+TGG | - | chr4_3:33771215-33771234 | None:intergenic | 40.0% |
!! | GGCACGATACTTTTGATTGA+AGG | - | chr4_3:33771314-33771333 | None:intergenic | 40.0% |
CCACTATGTTGAGATGTGAT+TGG | - | chr4_3:33771533-33771552 | None:intergenic | 40.0% | |
CCAATCACATCTCAACATAG+TGG | + | chr4_3:33771530-33771549 | Msa0638340:intron | 40.0% | |
AAGTCTAGGGGAATATCACA+AGG | - | chr4_3:33771768-33771787 | None:intergenic | 40.0% | |
! | CAGGGACTTTTTGTTGAGTA+AGG | + | chr4_3:33771841-33771860 | Msa0638340:intron | 40.0% |
TGTGGGCCATGAAGTTATAT+CGG | - | chr4_3:33772118-33772137 | None:intergenic | 40.0% | |
CACATTACAGGAAGGATACA+TGG | + | chr4_3:33772549-33772568 | Msa0638340:intron | 40.0% | |
!! | TCTTGGTAATGGGTCACATT+TGG | - | chr4_3:33772584-33772603 | None:intergenic | 40.0% |
!!! | CAAATAGAGGGGTTGGTTTT+TGG | - | chr4_3:33772651-33772670 | None:intergenic | 40.0% |
! | GGTTAAGAGTGCAAATAGAG+GGG | - | chr4_3:33772662-33772681 | None:intergenic | 40.0% |
ACCTTCTTATGGATGCCAAT+TGG | + | chr4_3:33772679-33772698 | Msa0638340:CDS | 40.0% | |
TCCAATTGGCATCCATAAGA+AGG | - | chr4_3:33772683-33772702 | None:intergenic | 40.0% | |
AATGCAACTCCTGTAACAAC+TGG | - | chr4_3:33772880-33772899 | None:intergenic | 40.0% | |
GTTGTTACAGGAGTTGCATT+AGG | + | chr4_3:33772880-33772899 | Msa0638340:CDS | 40.0% | |
AAGGGAAAGAGATAGAGATG+CGG | + | chr4_3:33772981-33773000 | Msa0638340:CDS | 40.0% | |
! | AGGTGACTTAGTGATTTGTC+CGG | + | chr4_3:33773029-33773048 | Msa0638340:CDS | 40.0% |
GTAGAGAACCGTTTCTATTG+AGG | + | chr4_3:33773064-33773083 | Msa0638340:CDS | 40.0% | |
! | GTGATCTCATAAGTTGGCAT+AGG | - | chr4_3:33773219-33773238 | None:intergenic | 40.0% |
TCAGGCGAAAACGATAAAAC+TGG | - | chr4_3:33773574-33773593 | None:intergenic | 40.0% | |
TATGATGAGAGAGAGAGAGC+GGG | - | chr4_3:33768763-33768782 | None:intergenic | 45.0% | |
CGGGAAACGATACATTGTCA+CGG | + | chr4_3:33769259-33769278 | Msa0638340:CDS | 45.0% | |
AATGGCTCAACCATCAACCT+TGG | - | chr4_3:33769290-33769309 | None:intergenic | 45.0% | |
TTTGGGAGTAGATAAGGTGC+TGG | + | chr4_3:33769322-33769341 | Msa0638340:CDS | 45.0% | |
! | TTGGGAGTAGATAAGGTGCT+GGG | + | chr4_3:33769323-33769342 | Msa0638340:CDS | 45.0% |
!! | AGTGGGTTTGTTAAGGAACC+AGG | + | chr4_3:33769380-33769399 | Msa0638340:CDS | 45.0% |
AAGGAACCAGGAGTTCTTGT+TGG | + | chr4_3:33769392-33769411 | Msa0638340:CDS | 45.0% | |
TGTTCACCAACAAGAACTCC+TGG | - | chr4_3:33769401-33769420 | None:intergenic | 45.0% | |
!! | CAATTTGCCTGATTTGGGAC+TGG | + | chr4_3:33769457-33769476 | Msa0638340:CDS | 45.0% |
GAAAGGAAGGGGAGAACTTT+GGG | + | chr4_3:33770138-33770157 | Msa0638340:intron | 45.0% | |
AAAGGAAGGGGAGAACTTTG+GGG | + | chr4_3:33770139-33770158 | Msa0638340:intron | 45.0% | |
AAGGGGGTTTCATATCTTGG+AGG | + | chr4_3:33770305-33770324 | Msa0638340:intron | 45.0% | |
! | TTCGAGAGCAGAGGGTTTTT+GGG | - | chr4_3:33770342-33770361 | None:intergenic | 45.0% |
! | TTTCGAGAGCAGAGGGTTTT+TGG | - | chr4_3:33770343-33770362 | None:intergenic | 45.0% |
GGGAGAGAGCTTTCAAGAAA+AGG | - | chr4_3:33770392-33770411 | None:intergenic | 45.0% | |
TGGACCATGGTTTGAATTGG+GGG | - | chr4_3:33771142-33771161 | None:intergenic | 45.0% | |
CATGGCCCACAAAACAGTTA+AGG | + | chr4_3:33772127-33772146 | Msa0638340:intron | 45.0% | |
AGGAAGGATACATGGTACCA+AGG | + | chr4_3:33772557-33772576 | Msa0638340:intron | 45.0% | |
AATGGGTCACATTTGGTCCT+TGG | - | chr4_3:33772577-33772596 | None:intergenic | 45.0% | |
! | GGGCTTAGAAGCTTGTTTCT+TGG | - | chr4_3:33772601-33772620 | None:intergenic | 45.0% |
! | AAGAGTGCAAATAGAGGGGT+TGG | - | chr4_3:33772658-33772677 | None:intergenic | 45.0% |
!!! | CTTTGACCTTTTTTGGGTGG+TGG | - | chr4_3:33772817-33772836 | None:intergenic | 45.0% |
!!! | CCACTTTGACCTTTTTTGGG+TGG | - | chr4_3:33772820-33772839 | None:intergenic | 45.0% |
CCACCCAAAAAAGGTCAAAG+TGG | + | chr4_3:33772817-33772836 | Msa0638340:CDS | 45.0% | |
!! | GAAAGCGCAACGGCTTTTAT+AGG | - | chr4_3:33772961-33772980 | None:intergenic | 45.0% |
TAAAAGCCGTTGCGCTTTCA+AGG | + | chr4_3:33772962-33772981 | Msa0638340:CDS | 45.0% | |
AAAAGCCGTTGCGCTTTCAA+GGG | + | chr4_3:33772963-33772982 | Msa0638340:CDS | 45.0% | |
! | TCTTTCCCTTGAAAGCGCAA+CGG | - | chr4_3:33772971-33772990 | None:intergenic | 45.0% |
! | GACTTAGTGATTTGTCCGGA+AGG | + | chr4_3:33773033-33773052 | Msa0638340:CDS | 45.0% |
TCTCTACATGTCGTTCCTTC+CGG | - | chr4_3:33773051-33773070 | None:intergenic | 45.0% | |
GCTTCGTATTAATCGCGACA+GGG | - | chr4_3:33773128-33773147 | None:intergenic | 45.0% | |
TGCTTCGTATTAATCGCGAC+AGG | - | chr4_3:33773129-33773148 | None:intergenic | 45.0% | |
!!! | TTTTATGGAACATCGGCTCG+CGG | + | chr4_3:33773156-33773175 | Msa0638340:CDS | 45.0% |
CCACTGCAAGTCAATTCCAA+AGG | - | chr4_3:33773258-33773277 | None:intergenic | 45.0% | |
!! | CCTTTGGAATTGACTTGCAG+TGG | + | chr4_3:33773255-33773274 | Msa0638340:CDS | 45.0% |
!! | TTGGAATTGACTTGCAGTGG+AGG | + | chr4_3:33773258-33773277 | Msa0638340:CDS | 45.0% |
!! | TGGAATTGACTTGCAGTGGA+GGG | + | chr4_3:33773259-33773278 | Msa0638340:CDS | 45.0% |
GCTATTCTTGCAGGAACAGA+TGG | + | chr4_3:33773375-33773394 | Msa0638340:CDS | 45.0% | |
!!! | TTTTCAAAAAAAAAATATAT+TGG | + | chr4_3:33769873-33769892 | Msa0638340:intron | 5.0% |
!! | ATAAAATTTAATTACATTTA+TGG | + | chr4_3:33771901-33771920 | Msa0638340:intron | 5.0% |
! | GCGGGTGAAGGGGTTTTTAA+AGG | - | chr4_3:33768745-33768764 | None:intergenic | 50.0% |
GGAAAGGCTCCCATGACAAA+GGG | - | chr4_3:33768894-33768913 | None:intergenic | 50.0% | |
TGGAAAGGCTCCCATGACAA+AGG | - | chr4_3:33768895-33768914 | None:intergenic | 50.0% | |
AGTGCGACGAGCATGTAGTA+TGG | - | chr4_3:33769017-33769036 | None:intergenic | 50.0% | |
CCAAGGTCTCGGAGACAAAT+AGG | - | chr4_3:33769106-33769125 | None:intergenic | 50.0% | |
CCTATTTGTCTCCGAGACCT+TGG | + | chr4_3:33769103-33769122 | Msa0638340:CDS | 50.0% | |
GGGGCTAAGGATAAAAGACG+TGG | + | chr4_3:33769157-33769176 | Msa0638340:CDS | 50.0% | |
TTTCTCGGTCAGTGTTGCCT+AGG | + | chr4_3:33769186-33769205 | Msa0638340:CDS | 50.0% | |
! | ACATTGTCACGGCTAGTCCA+AGG | + | chr4_3:33769270-33769289 | Msa0638340:CDS | 50.0% |
!! | TGGGAGTAGATAAGGTGCTG+GGG | + | chr4_3:33769324-33769343 | Msa0638340:CDS | 50.0% |
ACAAAAACAGGGAGGGCAAG+TGG | + | chr4_3:33769362-33769381 | Msa0638340:CDS | 50.0% | |
CAAAAACAGGGAGGGCAAGT+GGG | + | chr4_3:33769363-33769382 | Msa0638340:CDS | 50.0% | |
!! | GAGGGCAAGTGGGTTTGTTA+AGG | + | chr4_3:33769373-33769392 | Msa0638340:CDS | 50.0% |
GGAAAGGAAGGGGAGAACTT+TGG | + | chr4_3:33770137-33770156 | Msa0638340:intron | 50.0% | |
! | TCGAGAGCAGAGGGTTTTTG+GGG | - | chr4_3:33770341-33770360 | None:intergenic | 50.0% |
!!! | GAGCAGTTTTGTTAGGCCAC+CGG | - | chr4_3:33771069-33771088 | None:intergenic | 50.0% |
!!! | ACCAGGGGAGCAGTTTTGTT+AGG | - | chr4_3:33771076-33771095 | None:intergenic | 50.0% |
AAGACAGATGGAGCAGACCA+GGG | - | chr4_3:33771092-33771111 | None:intergenic | 50.0% | |
AAAGACAGATGGAGCAGACC+AGG | - | chr4_3:33771093-33771112 | None:intergenic | 50.0% | |
TGGTCCCCCAATTCAAACCA+TGG | + | chr4_3:33771135-33771154 | Msa0638340:intron | 50.0% | |
TATCGGTGGTTTCCTCCATG+TGG | - | chr4_3:33772101-33772120 | None:intergenic | 50.0% | |
GGGCCATGAAGTTATATCGG+TGG | - | chr4_3:33772115-33772134 | None:intergenic | 50.0% | |
!!! | TGACCTTTTTTGGGTGGTGG+TGG | - | chr4_3:33772814-33772833 | None:intergenic | 50.0% |
AGAGAGAGAGAGCGGGTGAA+GGG | - | chr4_3:33768756-33768775 | None:intergenic | 55.0% | |
!! | GAGAAGGGTGCCATCTAGGT+CGG | - | chr4_3:33768976-33768995 | None:intergenic | 55.0% |
!! | ACACGAGAAGGGTGCCATCT+AGG | - | chr4_3:33768980-33768999 | None:intergenic | 55.0% |
TGCACTTCGCGACACGAGAA+GGG | - | chr4_3:33768991-33769010 | None:intergenic | 55.0% | |
ATGCACTTCGCGACACGAGA+AGG | - | chr4_3:33768992-33769011 | None:intergenic | 55.0% | |
TTGTCACATTCGCGGGGCTA+AGG | + | chr4_3:33769144-33769163 | Msa0638340:CDS | 55.0% | |
GTTGCCTAGGTTCTATGCCG+AGG | + | chr4_3:33769199-33769218 | Msa0638340:CDS | 55.0% | |
ACGTCCTCGGCATAGAACCT+AGG | - | chr4_3:33769206-33769225 | None:intergenic | 55.0% | |
TGTCTCTGGATGCACGTCCT+CGG | - | chr4_3:33769219-33769238 | None:intergenic | 55.0% | |
AGGACGTGCATCCAGAGACA+TGG | + | chr4_3:33769219-33769238 | Msa0638340:CDS | 55.0% | |
! | CACGGCTAGTCCAAGGTTGA+TGG | + | chr4_3:33769277-33769296 | Msa0638340:CDS | 55.0% |
! | GGTGCTGGGGACTGAATTGA+TGG | + | chr4_3:33769337-33769356 | Msa0638340:CDS | 55.0% |
CTGTCTCCCAGTCCCAAATC+AGG | - | chr4_3:33769467-33769486 | None:intergenic | 55.0% | |
! | AGCTCTCTTTGGGAGTCTCG+AGG | + | chr4_3:33770114-33770133 | Msa0638340:intron | 55.0% |
! | GCTCTCTTTGGGAGTCTCGA+GGG | + | chr4_3:33770115-33770134 | Msa0638340:intron | 55.0% |
! | CTCTCTTTGGGAGTCTCGAG+GGG | + | chr4_3:33770116-33770135 | Msa0638340:intron | 55.0% |
TTTGGGAGTCTCGAGGGGAA+AGG | + | chr4_3:33770121-33770140 | Msa0638340:intron | 55.0% | |
GAGTCTCGAGGGGAAAGGAA+GGG | + | chr4_3:33770126-33770145 | Msa0638340:intron | 55.0% | |
AGTCTCGAGGGGAAAGGAAG+GGG | + | chr4_3:33770127-33770146 | Msa0638340:intron | 55.0% | |
!! | GAGAGCAGAGGGTTTTTGGG+GGG | - | chr4_3:33770339-33770358 | None:intergenic | 55.0% |
!! | CGAGAGCAGAGGGTTTTTGG+GGG | - | chr4_3:33770340-33770359 | None:intergenic | 55.0% |
GCCTAACAAAACTGCTCCCC+TGG | + | chr4_3:33771072-33771091 | Msa0638340:intron | 55.0% | |
AGACAGATGGAGCAGACCAG+GGG | - | chr4_3:33771091-33771110 | None:intergenic | 55.0% | |
GTGGTACAAGCTGTACGGCT+TGG | - | chr4_3:33771697-33771716 | None:intergenic | 55.0% | |
!!! | CCTTTTTTGGGTGGTGGTGG+AGG | - | chr4_3:33772811-33772830 | None:intergenic | 55.0% |
CCTCCACCACCACCCAAAAA+AGG | + | chr4_3:33772808-33772827 | Msa0638340:CDS | 55.0% | |
GGCTCGCGGACACAAATTGT+TGG | + | chr4_3:33773170-33773189 | Msa0638340:CDS | 55.0% | |
AGGGTTCTTGGAGGGACTCT+TGG | + | chr4_3:33773315-33773334 | Msa0638340:CDS | 55.0% | |
GAGAGAGAGAGCGGGTGAAG+GGG | - | chr4_3:33768755-33768774 | None:intergenic | 60.0% | |
GAGAGAGAGAGAGCGGGTGA+AGG | - | chr4_3:33768757-33768776 | None:intergenic | 60.0% | |
CTAGGTCGGATGCCACGGTT+TGG | - | chr4_3:33768962-33768981 | None:intergenic | 60.0% | |
ACCGTGGCATCCGACCTAGA+TGG | + | chr4_3:33768963-33768982 | Msa0638340:CDS | 60.0% | |
GCCATCTAGGTCGGATGCCA+CGG | - | chr4_3:33768967-33768986 | None:intergenic | 60.0% | |
ATGCTCGTCGCACTCGAAGC+TGG | + | chr4_3:33769023-33769042 | Msa0638340:CDS | 60.0% | |
GGAGTCTCGAGGGGAAAGGA+AGG | + | chr4_3:33770125-33770144 | Msa0638340:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 33768720 | 33773966 | 33768720 | ID=Msa0638340;Name=Msa0638340 |
chr4_3 | mRNA | 33768720 | 33773966 | 33768720 | ID=Msa0638340-mRNA-1;Parent=Msa0638340;Name=Msa0638340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=180|1|1|1|1|1|2|541|495 |
chr4_3 | exon | 33768720 | 33769520 | 33768720 | ID=Msa0638340-mRNA-1:exon:7608;Parent=Msa0638340-mRNA-1 |
chr4_3 | exon | 33772559 | 33773966 | 33772559 | ID=Msa0638340-mRNA-1:exon:7609;Parent=Msa0638340-mRNA-1 |
chr4_3 | five_prime_UTR | 33768720 | 33768899 | 33768720 | ID=Msa0638340-mRNA-1:five_prime_utr;Parent=Msa0638340-mRNA-1 |
chr4_3 | CDS | 33768900 | 33769520 | 33768900 | ID=Msa0638340-mRNA-1:cds;Parent=Msa0638340-mRNA-1 |
chr4_3 | CDS | 33772559 | 33773425 | 33772559 | ID=Msa0638340-mRNA-1:cds;Parent=Msa0638340-mRNA-1 |
chr4_3 | three_prime_UTR | 33773426 | 33773966 | 33773426 | ID=Msa0638340-mRNA-1:three_prime_utr;Parent=Msa0638340-mRNA-1 |
Gene Sequence |
Protein sequence |