AlfalfaGEDB | Msa0638340

M. sativa cultivar zhongmu-4 / Msa0638340

KEGG: K13508
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576
PFAM: PF12710.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638340	XP_013455158.1	99.192	495	4	0	1	495	1	495	0.0	996

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638340	sp\|O80437\|GPAT6_ARATH	79.794	485	96	1	7	489	10	494	0.0	788

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013310	Msa0638340	0.853209	2.779639e-61	-8.615850e-47
Msa0062220	Msa0638340	0.870097	1.887161e-66	-8.615850e-47
Msa0138970	Msa0638340	-0.801259	9.797082e-49	-8.615850e-47
Msa0222920	Msa0638340	0.812068	5.106845e-51	-8.615850e-47
Msa0260820	Msa0638340	-0.818801	1.621854e-52	-8.615850e-47
Msa0532550	Msa0638340	0.954809	1.276994e-112	-8.615850e-47
Msa0589400	Msa0638340	0.902964	5.654535e-79	-8.615850e-47
Msa0608200	Msa0638340	0.833210	6.078075e-56	-8.615850e-47
Msa0638340	Msa0648520	0.826493	2.631493e-54	-8.615850e-47
Msa0638340	Msa0667470	0.902329	1.083150e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638340	MtrunA17_Chr4g0005991	99.192	495	4	0	1	495	1	495	0.0	996
Msa0638340	MtrunA17_Chr7g0241831	84.040	495	77	2	1	494	3	496	0.0	851
Msa0638340	MtrunA17_Chr8g0348781	61.914	491	180	5	7	491	10	499	0.0	630
Msa0638340	MtrunA17_Chr1g0170421	57.895	494	200	5	7	494	41	532	0.0	589
Msa0638340	MtrunA17_Chr5g0435581	51.046	478	224	4	21	492	2	475	2.49e-164	474
Msa0638340	MtrunA17_Chr5g0443341	50.713	491	226	7	7	491	51	531	2.92e-162	470
Msa0638340	MtrunA17_Chr3g0096481	48.193	498	233	9	7	493	46	529	2.38e-155	452
Msa0638340	MtrunA17_Chr1g0194391	43.542	480	254	8	17	489	60	529	1.90e-127	381
Msa0638340	MtrunA17_Chr5g0425071	42.300	487	266	8	15	495	10	487	1.95e-121	364
Msa0638340	MtrunA17_Chr3g0096591	52.920	274	122	2	220	489	1	271	7.69e-99	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638340	AT2G38110.1	79.794	485	96	1	7	489	10	494	0.0	788
Msa0638340	AT4G00400.1	61.680	488	181	5	7	491	10	494	0.0	603
Msa0638340	AT1G01610.1	61.179	492	184	6	7	494	10	498	0.0	595
Msa0638340	AT3G11430.1	51.346	483	213	5	19	489	9	481	8.38e-166	478
Msa0638340	AT5G06090.1	48.560	486	222	6	19	489	7	479	8.79e-153	445
Msa0638340	AT1G06520.1	44.961	516	248	11	5	490	76	585	3.76e-146	431
Msa0638340	AT1G02390.1	39.468	489	276	9	16	490	46	528	1.40e-110	338
Msa0638340	AT4G01950.1	39.351	493	269	11	17	492	41	520	7.29e-108	331
Msa0638340	AT4G01950.2	39.351	493	269	11	17	492	69	548	2.01e-107	330
Msa0638340	AT3G11325.2	49.237	262	100	1	228	489	144	372	1.07e-83	264

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Find 133 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCGTTGCGCTTTCAA+GGG	0.561930	4_3:+33772963	Msa0638340:CDS
AACTTTGAAATTAAACATCA+TGG	0.466576	4_3:-33773635	None:intergenic
AAGAAAGTGATCTCATAAGT+TGG	0.509395	4_3:-33773222	None:intergenic
AAGACGTGGAGATTGTTTCT+CGG	0.526609	4_3:+33769171	Msa0638340:CDS
AAGAGTGCAAATAGAGGGGT+TGG	0.455638	4_3:-33772655	None:intergenic
AAGGAACCAGGAGTTCTTGT+TGG	0.472018	4_3:+33769392	Msa0638340:CDS
AAGGGAAAGAGATAGAGATG+CGG	0.731861	4_3:+33772981	Msa0638340:CDS
AAGGTTAAGAGTGCAAATAG+AGG	0.530421	4_3:-33772661	None:intergenic
AAGTTGCAAATTATATTCAA+AGG	0.504845	4_3:+33773295	Msa0638340:CDS
AATCATACTTTCAATCTTAA+GGG	0.343266	4_3:+33772702	Msa0638340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAGCTATAGAGATTATAGT+TGG	-	chr4_3:33768797-33768816	None:intergenic	30.0%
TGCTACATTTGAAAATTGGT+GGG	-	chr4_3:33768923-33768942	None:intergenic	30.0%
ATTAATCTTTGTCACATTCG+CGG	+	chr4_3:33769136-33769155	Msa0638340:CDS	30.0%
CCCAAAAATGTCTTAACAAA+TGG	-	chr4_3:33769308-33769327	None:intergenic	30.0%
AGGCAGTTATGAAAGAATTT+GGG	+	chr4_3:33769429-33769448	Msa0638340:CDS	30.0%
AGTAACAATTTGCCTGATTT+GGG	+	chr4_3:33769452-33769471	Msa0638340:CDS	30.0%
ACAATAACTAAGCTCTCTTT+GGG	+	chr4_3:33770104-33770123	Msa0638340:intron	30.0%
TTAGTTGTCACAAATTAAGG+GGG	+	chr4_3:33770289-33770308	Msa0638340:intron	30.0%
TCTGTTTGAGAGTTTAAAAG+GGG	-	chr4_3:33770412-33770431	None:intergenic	30.0%
GTCTGTTTGAGAGTTTAAAA+GGG	-	chr4_3:33770413-33770432	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	33768720	33773966	33768720	ID=Msa0638340;Name=Msa0638340
chr4_3	mRNA	33768720	33773966	33768720	ID=Msa0638340-mRNA-1;Parent=Msa0638340;Name=Msa0638340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=180\|1\|1\|1\|1\|1\|2\|541\|495
chr4_3	exon	33768720	33769520	33768720	ID=Msa0638340-mRNA-1:exon:7608;Parent=Msa0638340-mRNA-1
chr4_3	exon	33772559	33773966	33772559	ID=Msa0638340-mRNA-1:exon:7609;Parent=Msa0638340-mRNA-1
chr4_3	five_prime_UTR	33768720	33768899	33768720	ID=Msa0638340-mRNA-1:five_prime_utr;Parent=Msa0638340-mRNA-1
chr4_3	CDS	33768900	33769520	33768900	ID=Msa0638340-mRNA-1:cds;Parent=Msa0638340-mRNA-1
chr4_3	CDS	33772559	33773425	33772559	ID=Msa0638340-mRNA-1:cds;Parent=Msa0638340-mRNA-1
chr4_3	three_prime_UTR	33773426	33773966	33773426	ID=Msa0638340-mRNA-1:three_prime_utr;Parent=Msa0638340-mRNA-1

Gene Sequence

>Msa0638340

ATGGGAGCCTTTCCACTTTTCCCACCAATTTTCAAATGTAGCACAAAAGATAGATCAAACCAAACCGTGGCATCCGACCTAGATGGCACCCTTCTCGTGTCGCGAAGTGCATTTCCATACTACATGCTCGTCGCACTCGAAGCTGGAAGCATTCTAAGAGCTTTAATTCTCTTATCCTTAGTCCCTTTCGTATATTTCACGTACCTATTTGTCTCCGAGACCTTGGCAATCAAAACATTAATCTTTGTCACATTCGCGGGGCTAAGGATAAAAGACGTGGAGATTGTTTCTCGGTCAGTGTTGCCTAGGTTCTATGCCGAGGACGTGCATCCAGAGACATGGAAAGTGTTCAATTCGTTCGGGAAACGATACATTGTCACGGCTAGTCCAAGGTTGATGGTTGAGCCATTTGTTAAGACATTTTTGGGAGTAGATAAGGTGCTGGGGACTGAATTGATGGTTACAAAAACAGGGAGGGCAAGTGGGTTTGTTAAGGAACCAGGAGTTCTTGTTGGTGAACACAAGAAAGAGGCAGTTATGAAAGAATTTGGGAGTAACAATTTGCCTGATTTGGGACTGGGAGACAGTGTGACTGACTCTGACTTCATGTCTATTTGCAAGGAAGGATACATGGTACCAAGGACCAAATGTGACCCATTACCAAGAAACAAGCTTCTAAGCCCAATTATTTTTCATGAGGGTAGATTAGTCCAAAAACCAACCCCTCTATTTGCACTCTTAACCTTCTTATGGATGCCAATTGGAATCATACTTTCAATCTTAAGGGTGTATCTCAACATCCCTTTACCTGAAAAAATTGCTTGGTACAATTATAAATTACTTGGAATAAGAGTAATTAGAAAAGGTACACCTCCACCACCACCCAAAAAAGGTCAAAGTGGTGTTCTATTTGTTTGCAACCATAGAACAGTTTTAGATCCAGTTGTTACAGGAGTTGCATTAGGAAGAAAAATAAGTTGTGTAACTTATAGTATAAGTAAATTCACCGAAATAATTTCGCCTATAAAAGCCGTTGCGCTTTCAAGGGAAAGAGATAGAGATGCGGCAAATATAAAGAAATTGCTTGAAGAAGGTGACTTAGTGATTTGTCCGGAAGGAACGACATGTAGAGAACCGTTTCTATTGAGGTTTAGTGCTCTTTTTGCAGAATTAACGGATAGGATTGTCCCTGTCGCGATTAATACGAAGCAAAGTTTGTTTTATGGAACATCGGCTCGCGGACACAAATTGTTGGATCCTTATTTTGTGTTCATGAATCCTATGCCAACTTATGAGATCACTTTCTTGAATCAGTTGCCTTTGGAATTGACTTGCAGTGGAGGGAAATCTTCAATTGAAGTTGCAAATTATATTCAAAGGGTTCTTGGAGGGACTCTTGGATTTGAATGTACCAATTTAACAAGGAAGGATAAGTATGCTATTCTTGCAGGAACAGATGGAATTGTTAGATCTACGAAGAAAGATTAA

Protein sequence

>Msa0638340

MGAFPLFPPIFKCSTKDRSNQTVASDLDGTLLVSRSAFPYYMLVALEAGSILRALILLSLVPFVYFTYLFVSETLAIKTLIFVTFAGLRIKDVEIVSRSVLPRFYAEDVHPETWKVFNSFGKRYIVTASPRLMVEPFVKTFLGVDKVLGTELMVTKTGRASGFVKEPGVLVGEHKKEAVMKEFGSNNLPDLGLGDSVTDSDFMSICKEGYMVPRTKCDPLPRNKLLSPIIFHEGRLVQKPTPLFALLTFLWMPIGIILSILRVYLNIPLPEKIAWYNYKLLGIRVIRKGTPPPPPKKGQSGVLFVCNHRTVLDPVVTGVALGRKISCVTYSISKFTEIISPIKAVALSRERDRDAANIKKLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSLFYGTSARGHKLLDPYFVFMNPMPTYEITFLNQLPLELTCSGGKSSIEVANYIQRVLGGTLGFECTNLTRKDKYAILAGTDGIVRSTKKD*