AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532550 MtrunA17_Chr4g0005991 98.990 495 5 0 1 495 1 495 0.0 998
Msa0532550 MtrunA17_Chr7g0241831 84.040 495 77 2 1 494 3 496 0.0 853
Msa0532550 MtrunA17_Chr8g0348781 62.118 491 179 5 7 491 10 499 0.0 634
Msa0532550 MtrunA17_Chr1g0170421 57.895 494 200 5 7 494 41 532 0.0 590
Msa0532550 MtrunA17_Chr5g0435581 51.255 478 223 4 21 492 2 475 2.52e-164 474
Msa0532550 MtrunA17_Chr5g0443341 50.509 491 227 7 7 491 51 531 9.13e-163 471
Msa0532550 MtrunA17_Chr3g0096481 47.992 498 234 9 7 493 46 529 6.90e-155 451
Msa0532550 MtrunA17_Chr1g0194391 43.542 480 254 8 17 489 60 529 2.60e-127 381
Msa0532550 MtrunA17_Chr5g0425071 41.975 486 267 8 15 494 10 486 5.99e-121 363
Msa0532550 MtrunA17_Chr3g0096591 52.920 274 122 2 220 489 1 271 7.13e-99 298
Msa0532550 MtrunA17_Chr3g0096581 39.806 206 114 5 8 212 51 247 3.69e-41 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532550 AT2G38110.1 80.000 485 95 1 7 489 10 494 0.0 791
Msa0532550 AT4G00400.1 61.680 488 181 5 7 491 10 494 0.0 606
Msa0532550 AT1G01610.1 60.976 492 185 6 7 494 10 498 0.0 596
Msa0532550 AT3G11430.1 51.553 483 212 5 19 489 9 481 7.60e-166 478
Msa0532550 AT5G06090.1 48.765 486 221 6 19 489 7 479 7.07e-153 445
Msa0532550 AT1G06520.1 44.767 516 249 11 5 490 76 585 1.34e-146 432
Msa0532550 AT1G02390.1 39.468 489 276 9 16 490 46 528 1.51e-110 338
Msa0532550 AT4G01950.1 39.351 493 269 11 17 492 41 520 5.39e-108 331
Msa0532550 AT4G01950.2 39.351 493 269 11 17 492 69 548 1.57e-107 331
Msa0532550 AT3G11325.2 49.237 262 100 1 228 489 144 372 1.12e-83 264
Msa0532550 AT3G11325.2 37.143 105 66 0 31 135 9 113 3.99e-16 80.5
Msa0532550 AT3G11325.1 49.237 262 100 1 228 489 141 369 1.43e-83 264
Msa0532550 AT3G11325.1 37.143 105 66 0 31 135 6 110 4.09e-16 80.5

Find 132 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCCTTCCTTGTTAAAT+TGG 0.158055 4_1:+6706568 None:intergenic
GAGGCAGTTATGAAAGAATT+TGG 0.160182 4_1:-6710396 Msa0532550:CDS
TTGCACTCTTAACCTTCTTA+TGG 0.235930 4_1:-6707249 Msa0532550:CDS
CAAACTTATCTGCAAATTAA+TGG 0.250410 4_1:+6705975 None:intergenic
GAATTATCGACGGAAATTTC+AGG 0.258294 4_1:+6706328 None:intergenic
TTTGTACTACATTTAGAAAT+TGG 0.289581 4_1:+6710900 None:intergenic
GAATCATACTTTCAATCTTA+AGG 0.293063 4_1:-6707216 Msa0532550:CDS
GAGTAACAATTTGCCTGATT+TGG 0.303564 4_1:-6710373 Msa0532550:CDS
AATTATATTCAAAGGGTTCT+TGG 0.305203 4_1:-6706614 Msa0532550:CDS
AGAAGCTTGTTTCTTGGTAA+TGG 0.311340 4_1:+6707325 None:intergenic
CATTAATTTGCAGATAAGTT+TGG 0.328455 4_1:-6705974 Msa0532550:three_prime_UTR
GATAAGTATGCTATTCTTGC+AGG 0.334585 4_1:-6706551 Msa0532550:CDS
GGGCTTAGAAGCTTGTTTCT+TGG 0.336364 4_1:+6707319 None:intergenic
TCTCTACATGTCGTTCCTTC+CGG 0.339845 4_1:+6706869 None:intergenic
TTTCTTGAATCAGTTGCCTT+TGG 0.341998 4_1:-6706678 Msa0532550:CDS
AGTAACAATTTGCCTGATTT+GGG 0.342680 4_1:-6710372 Msa0532550:CDS
AATCATACTTTCAATCTTAA+GGG 0.343266 4_1:-6707215 Msa0532550:CDS
AGGGTTCTTGGAGGGACTCT+TGG 0.352717 4_1:-6706602 Msa0532550:CDS
AATGAAGTGTATTACAGTTA+TGG 0.356496 4_1:-6706083 Msa0532550:three_prime_UTR
GGATTCATGAACACAAAATA+AGG 0.356896 4_1:+6706722 None:intergenic
CCAAGGTCTCGGAGACAAAT+AGG 0.357156 4_1:+6710721 None:intergenic
GAAGCTTGTTTCTTGGTAAT+GGG 0.362820 4_1:+6707326 None:intergenic
ACATCACAAAGATGCACTAT+AGG 0.372868 4_1:+6706138 None:intergenic
AGGCAGTTATGAAAGAATTT+GGG 0.373459 4_1:-6710395 Msa0532550:CDS
TCTTGGTAATGGGTCACATT+TGG 0.374038 4_1:+6707336 None:intergenic
TGGAAGGTGTTCAATTCGTT+CGG 0.374308 4_1:-6710585 Msa0532550:CDS
GTTGTTACAGGAGTTGCATT+AGG 0.394796 4_1:-6707037 Msa0532550:CDS
TAAAAGCCGTTGCGCTTTCA+AGG 0.395510 4_1:-6706955 Msa0532550:CDS
CTGGATCTAAAACTGTTCTA+TGG 0.403705 4_1:+6707059 None:intergenic
GAGGGCAAGTGGGTTTGTTA+AGG 0.407100 4_1:-6710451 Msa0532550:CDS
TGGTACAATTATAAATTACT+TGG 0.415906 4_1:-6707157 Msa0532550:CDS
ACCTTCTTATGGATGCCAAT+TGG 0.419088 4_1:-6707238 Msa0532550:CDS
TTGAACACCTTCCATGTCTC+TGG 0.423670 4_1:+6710594 None:intergenic
TTAGAAATTGGTGGGAAAAG+TGG 0.430405 4_1:+6710912 None:intergenic
TTAATCTTCGTCACATTCGC+GGG 0.431036 4_1:-6710687 Msa0532550:CDS
AATGCAACTCCTGTAACAAC+TGG 0.433295 4_1:+6707040 None:intergenic
AGTGCGACGAGCATGTAGTA+TGG 0.434214 4_1:+6710810 None:intergenic
GGAAGGTGTTCAATTCGTTC+GGG 0.434242 4_1:-6710584 Msa0532550:CDS
CACGGCTAGTCCAAGGTTGA+TGG 0.435779 4_1:-6710547 Msa0532550:CDS
AATGGGTCACATTTGGTCCT+TGG 0.442068 4_1:+6707343 None:intergenic
ATTGAAAGTATGATTCCAAT+TGG 0.443499 4_1:+6707223 None:intergenic
TCGTCACATTCGCGGGGCTA+AGG 0.444489 4_1:-6710680 Msa0532550:CDS
TCAGGCGAAAACGATAAAAC+TGG 0.446684 4_1:+6706346 None:intergenic
CTGTCTCCCAGTCCCAAATC+AGG 0.448486 4_1:+6710360 None:intergenic
CAATTTGCCTGATTTGGGAC+TGG 0.449611 4_1:-6710367 Msa0532550:CDS
TGTTATGATGAGAGAGAGAG+AGG 0.454275 4_1:+6711061 None:intergenic
AAGAGTGCAAATAGAGGGGT+TGG 0.455638 4_1:+6707262 None:intergenic
GTAGAGAACCGTTTCTATTG+AGG 0.458187 4_1:-6706853 Msa0532550:CDS
ATGGGATTCTTATGCACAAA+TGG 0.458400 4_1:-6706023 Msa0532550:three_prime_UTR
TCCAATTGGCATCCATAAGA+AGG 0.458669 4_1:+6707237 None:intergenic
CTTGCTATAGAGATTATAGT+TGG 0.461984 4_1:+6711030 None:intergenic
AAAATTTCCTCCATTTGTCA+TGG 0.462801 4_1:-6710943 Msa0532550:exon
GGTGCTAGGGACTGAATTGA+TGG 0.464183 4_1:-6710487 Msa0532550:CDS
CGAAGAAAGATTAAAATTGA+AGG 0.466335 4_1:-6706505 Msa0532550:exon
AACTTTGAAATTAAACATCA+TGG 0.466576 4_1:+6706282 None:intergenic
GGAAAGGCTCCCATGACAAA+TGG 0.467493 4_1:+6710933 None:intergenic
AGATGTAACAATGTGGCATA+TGG 0.467889 4_1:-6706042 Msa0532550:three_prime_UTR
AATTTGCCTGATTTGGGACT+GGG 0.468437 4_1:-6710366 Msa0532550:CDS
AAGGAACCAGGAGTTCTTGT+TGG 0.472018 4_1:-6710432 Msa0532550:CDS
TAGTTGATTTATGTTGTTGA+GGG 0.473744 4_1:-6706169 Msa0532550:three_prime_UTR
ATGCTCGTCGCACTTGAAGC+TGG 0.474559 4_1:-6710801 Msa0532550:CDS
TGCTTCGTATTAATCGCGAC+AGG 0.478003 4_1:+6706791 None:intergenic
TTTCTCGGTCAGTGTTGCCT+AGG 0.478351 4_1:-6710638 Msa0532550:CDS
TACTACATTTAGAAATTGGT+GGG 0.484182 4_1:+6710904 None:intergenic
TTGGGAGTAGATAAGGTGCT+AGG 0.486623 4_1:-6710501 Msa0532550:CDS
ATTAATCTTCGTCACATTCG+CGG 0.490007 4_1:-6710688 Msa0532550:CDS
CCTTTGGAATTGACTTGCAG+TGG 0.493619 4_1:-6706662 Msa0532550:CDS
ATAAAGAAATTGCTTGAAGA+AGG 0.497977 4_1:-6706908 Msa0532550:CDS
GGCTCGCGGACACAAATTGT+TGG 0.498712 4_1:-6706747 Msa0532550:CDS
TTGTGAGGGAAATATGGAAT+TGG 0.500040 4_1:+6711002 None:intergenic
GAAATATATGAAAGGGACTA+AGG 0.501854 4_1:+6710749 None:intergenic
CACATTACAGGAAGGATACA+TGG 0.503595 4_1:-6707368 Msa0532550:intron
AGTTGCAAATTATATTCAAA+GGG 0.504087 4_1:-6706621 Msa0532550:CDS
CTAAGTCAGATGCCACGGTC+TGG 0.504265 4_1:+6710865 None:intergenic
AAGTTGCAAATTATATTCAA+AGG 0.504845 4_1:-6706622 Msa0532550:CDS
AGTGCATCTTTGTGATGTAA+AGG 0.507474 4_1:-6706133 Msa0532550:three_prime_UTR
TGTTCACCAACAAGAACTCC+TGG 0.509031 4_1:+6710426 None:intergenic
AAGAAAGTGATCTCATAAGT+TGG 0.509395 4_1:+6706695 None:intergenic
GCTATTCTTGCAGGAACAGA+TGG 0.510039 4_1:-6706542 Msa0532550:CDS
GGAATAAGAGTAATTAGAAA+AGG 0.510705 4_1:-6707136 Msa0532550:CDS
CCTATTTGTCTCCGAGACCT+TGG 0.512360 4_1:-6710721 Msa0532550:CDS
AGGTTAAGAGTGCAAATAGA+GGG 0.520148 4_1:+6707257 None:intergenic
TAAAGGACGAAAGATGGGTA+TGG 0.520755 4_1:+6711097 None:intergenic
AGGTGACTTAGTGATTTGTC+CGG 0.526292 4_1:-6706888 Msa0532550:CDS
GGTACGTGAAATATATGAAA+GGG 0.527101 4_1:+6710742 None:intergenic
AAATTTCCTCCATTTGTCAT+GGG 0.527115 4_1:-6710942 Msa0532550:exon
GAGACGTGGAGATTGTTTCT+CGG 0.527308 4_1:-6710653 Msa0532550:CDS
AAGGTTAAGAGTGCAAATAG+AGG 0.530421 4_1:+6707256 None:intergenic
TGACTTCATGTCTATTTGCA+AGG 0.539001 4_1:-6710325 Msa0532550:intron
GCACTAAACCTCAATAGAAA+CGG 0.544972 4_1:+6706845 None:intergenic
ATATTCAAAGGGTTCTTGGA+GGG 0.546066 4_1:-6706610 Msa0532550:CDS
ATGCACTTCGCGACACGAGA+AGG 0.548044 4_1:+6710835 None:intergenic
TGTTGGTGAACACAAGAAAG+AGG 0.548662 4_1:-6710415 Msa0532550:CDS
TGGGAGTAGATAAGGTGCTA+GGG 0.549005 4_1:-6710500 Msa0532550:CDS
GTAGTTGATTTATGTTGTTG+AGG 0.551188 4_1:-6706170 Msa0532550:three_prime_UTR
AGTGGGTTTGTTAAGGAACC+AGG 0.551989 4_1:-6710444 Msa0532550:CDS
AATGGCTCAACCATCAACCT+TGG 0.553342 4_1:+6710537 None:intergenic
TGTCTCTGGATGCACGTCCT+CGG 0.553696 4_1:+6710608 None:intergenic
ATGTACCAATTTAACAAGGA+AGG 0.557734 4_1:-6706573 Msa0532550:CDS
GTACTACATTTAGAAATTGG+TGG 0.557810 4_1:+6710903 None:intergenic
TATATTCAAAGGGTTCTTGG+AGG 0.558009 4_1:-6706611 Msa0532550:CDS
AAAAGCCGTTGCGCTTTCAA+GGG 0.561930 4_1:-6706954 Msa0532550:CDS
TGGAATTGACTTGCAGTGGA+GGG 0.564415 4_1:-6706658 Msa0532550:CDS
AGGTACGTGAAATATATGAA+AGG 0.567264 4_1:+6710741 None:intergenic
TTGGAATTGACTTGCAGTGG+AGG 0.574024 4_1:-6706659 Msa0532550:CDS
GCCGTCTAAGTCAGATGCCA+CGG 0.578808 4_1:+6710860 None:intergenic
GAAGAAAGATTAAAATTGAA+GGG 0.579270 4_1:-6706504 Msa0532550:exon
GTGATCTCATAAGTTGGCAT+AGG 0.582217 4_1:+6706701 None:intergenic
GGTTAAGAGTGCAAATAGAG+GGG 0.592460 4_1:+6707258 None:intergenic
TGCACTTCGCGACACGAGAA+GGG 0.596300 4_1:+6710836 None:intergenic
AGGACGTGCATCCAGAGACA+TGG 0.604083 4_1:-6710605 Msa0532550:CDS
TCTTTCCCTTGAAAGCGCAA+CGG 0.605263 4_1:+6706949 None:intergenic
ACATTGTCACGGCTAGTCCA+AGG 0.617998 4_1:-6710554 Msa0532550:CDS
AAGGCTCCCATGACAAATGG+AGG 0.625438 4_1:+6710936 None:intergenic
TCGTCGCAAAATATCAAAGA+CGG 0.625835 4_1:-6706381 Msa0532550:three_prime_UTR
GTTGCCTAGGTTCTATGCCG+AGG 0.628644 4_1:-6710625 Msa0532550:CDS
GATGTAACAATGTGGCATAT+GGG 0.632032 4_1:-6706041 Msa0532550:three_prime_UTR
GCTTCGTATTAATCGCGACA+GGG 0.633339 4_1:+6706792 None:intergenic
CCACTGCAAGTCAATTCCAA+AGG 0.642771 4_1:+6706662 None:intergenic
ACCGTGGCATCTGACTTAGA+CGG 0.652681 4_1:-6710861 Msa0532550:CDS
GACTTAGTGATTTGTCCGGA+AGG 0.655073 4_1:-6706884 Msa0532550:CDS
ACGTCCTCGGCATAGAACCT+AGG 0.656526 4_1:+6710621 None:intergenic
TTGAATGTACCAATTTAACA+AGG 0.660163 4_1:-6706577 Msa0532550:CDS
AATTGGTGGGAAAAGTGGAA+AGG 0.662471 4_1:+6710917 None:intergenic
TAATCTTCGTCACATTCGCG+GGG 0.670122 4_1:-6710686 Msa0532550:CDS
AGATAGATCAAACCAGACCG+TGG 0.682527 4_1:-6710877 Msa0532550:CDS
AGGAAGGATACATGGTACCA+AGG 0.684832 4_1:-6707360 Msa0532550:CDS
CGGGAAACGATACATTGTCA+CGG 0.691995 4_1:-6710565 Msa0532550:CDS
CGTGCATCCAGAGACATGGA+AGG 0.693169 4_1:-6710601 Msa0532550:CDS
GGGGCTAAGGATAAGAGACG+TGG 0.717767 4_1:-6710667 Msa0532550:CDS
AAGGGAAAGAGATAGAGATG+CGG 0.731861 4_1:-6706936 Msa0532550:CDS
CTGATTGAGATGTAACAATG+TGG 0.770996 4_1:-6706049 Msa0532550:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATGTTTTATTAATTAA+TGG - chr4_1:6706973-6706992 Msa0532550:CDS 10.0%
!!! CTTTTCAAAAAAAAATATAT+TGG - chr4_1:6707126-6707145 Msa0532550:CDS 10.0%
!! TGATGATTATTAAATTATAT+CGG - chr4_1:6708187-6708206 Msa0532550:intron 10.0%
!! AAAAATAAAAATACATAGTT+AGG + chr4_1:6709242-6709261 None:intergenic 10.0%
!! AACTAACACATTATATAATT+TGG + chr4_1:6706848-6706867 None:intergenic 15.0%
!!! TTATATAATGTGTTAGTTTA+TGG - chr4_1:6706850-6706869 Msa0532550:CDS 15.0%
!! TAATAGACTATAATTTAGAA+TGG - chr4_1:6707051-6707070 Msa0532550:CDS 15.0%
!! CAAAAACATGATAAATAAAT+AGG + chr4_1:6707205-6707224 None:intergenic 15.0%
!! ATAACAAAAATATACATGAA+TGG + chr4_1:6707231-6707250 None:intergenic 15.0%
!! TTTGATTAATCAAAATCTAA+TGG - chr4_1:6707312-6707331 Msa0532550:CDS 15.0%
!!! TTTTTTTTTCAATCTAACTT+AGG - chr4_1:6707734-6707753 Msa0532550:intron 15.0%
!! TATAAAACATCAATAAAGTT+AGG + chr4_1:6708439-6708458 None:intergenic 15.0%
!!! TTTTTTTTCTTCTGTATTAT+TGG + chr4_1:6708600-6708619 None:intergenic 15.0%
!!! TTTTCATACATTTTTTTATG+TGG + chr4_1:6708921-6708940 None:intergenic 15.0%
!!! TTTTCATCTGTAATTTAATT+TGG + chr4_1:6710653-6710672 None:intergenic 15.0%
!! TTAAAAAAATGAATTATCGA+CGG + chr4_1:6710760-6710779 None:intergenic 15.0%
!!! GTACATAATATGTTATTTTT+AGG + chr4_1:6710863-6710882 None:intergenic 15.0%
!! TTTGTACTACATTTAGAAAT+TGG + chr4_1:6706178-6706197 None:intergenic 20.0%
!! TCACAACTAAAAAATTATAC+TGG + chr4_1:6707524-6707543 None:intergenic 20.0%
!!! TTTTTAGTTGTGACAAATTA+AGG - chr4_1:6707531-6707550 Msa0532550:intron 20.0%
!!! TTTTAGTTGTGACAAATTAA+GGG - chr4_1:6707532-6707551 Msa0532550:intron 20.0%
!!! AGTTTTAGGTGAAAAAAAAT+AGG + chr4_1:6707795-6707814 None:intergenic 20.0%
!!! TTTTTGTAGATGTGATATTA+GGG - chr4_1:6707858-6707877 Msa0532550:intron 20.0%
!! GTAAATTGAGAAATCAAAAT+AGG + chr4_1:6707915-6707934 None:intergenic 20.0%
!! TAAAGATAGAAAAAGACATA+TGG + chr4_1:6708354-6708373 None:intergenic 20.0%
!!! TAACTTTAGAGAACAAAAAA+TGG + chr4_1:6708412-6708431 None:intergenic 20.0%
!!! ACTGATAAAATTTTGAGAAA+AGG - chr4_1:6708522-6708541 Msa0532550:intron 20.0%
!! AAGAAAAAAAAATCCCTAAT+TGG - chr4_1:6708609-6708628 Msa0532550:intron 20.0%
!! CAATTATAAAATCAGTTCTA+GGG - chr4_1:6708640-6708659 Msa0532550:intron 20.0%
!! AATAAAATTTAGGAAGTCTA+GGG + chr4_1:6708987-6709006 None:intergenic 20.0%
!! AAATAAAATTTAGGAAGTCT+AGG + chr4_1:6708988-6709007 None:intergenic 20.0%
!! AACAAGGACAAATAAAATTT+AGG + chr4_1:6708997-6709016 None:intergenic 20.0%
!! AGAAAAGAAAAAAAAGAACA+AGG + chr4_1:6709013-6709032 None:intergenic 20.0%
!! TTATGATAACTTTATGAGTT+TGG + chr4_1:6709210-6709229 None:intergenic 20.0%
!!! CTGTATTTTATCTTTTGTTA+TGG - chr4_1:6709623-6709642 Msa0532550:intron 20.0%
!! AGAAATAATTAGACAATGTT+TGG + chr4_1:6709687-6709706 None:intergenic 20.0%
!! AATCATACTTTCAATCTTAA+GGG - chr4_1:6709860-6709879 Msa0532550:intron 20.0%
!! TGGTACAATTATAAATTACT+TGG - chr4_1:6709918-6709937 Msa0532550:intron 20.0%
!!! TTTTATAGGCGAAATTATTT+CGG + chr4_1:6710105-6710124 None:intergenic 20.0%
!! GAAGAAAGATTAAAATTGAA+GGG - chr4_1:6710571-6710590 Msa0532550:CDS 20.0%
!!! AACTTTGAAATTAAACATCA+TGG + chr4_1:6710796-6710815 None:intergenic 20.0%
!!! AATGGAGGAAATTTTTTTGA+AGG + chr4_1:6706127-6706146 None:intergenic 25.0%
! TACTACATTTAGAAATTGGT+GGG + chr4_1:6706174-6706193 None:intergenic 25.0%
!!! CCATTTGTTAAGACATTTTT+GGG - chr4_1:6706556-6706575 Msa0532550:CDS 25.0%
!! AATTGATGGTTACAAAAACA+GGG - chr4_1:6706602-6706621 Msa0532550:CDS 25.0%
!! ATTTGTGAATGTCGATTAAA+AGG + chr4_1:6706904-6706923 None:intergenic 25.0%
!! AGACTATAATTTAGAATGGA+TGG - chr4_1:6707055-6707074 Msa0532550:CDS 25.0%
! ATTAAATTGACTACAGAAAC+TGG + chr4_1:6707152-6707171 None:intergenic 25.0%
! CAGATAGATATGGATATATT+AGG + chr4_1:6707182-6707201 None:intergenic 25.0%
! AATAAATAGGCAGATAGATA+TGG + chr4_1:6707192-6707211 None:intergenic 25.0%
!! AATTATACTGGAGGATATTT+TGG + chr4_1:6707512-6707531 None:intergenic 25.0%
! CAACTAAAAAATTATACTGG+AGG + chr4_1:6707521-6707540 None:intergenic 25.0%
! TTTAGTTGTGACAAATTAAG+GGG - chr4_1:6707533-6707552 Msa0532550:intron 25.0%
!! AGTCATATTTCACAAGTTTT+AGG + chr4_1:6707809-6707828 None:intergenic 25.0%
!! GTTTTTGTAGATGTGATATT+AGG - chr4_1:6707857-6707876 Msa0532550:intron 25.0%
! ATGTGATATTAGGGATTAAA+AGG - chr4_1:6707867-6707886 Msa0532550:intron 25.0%
! TGTGATATTAGGGATTAAAA+GGG - chr4_1:6707868-6707887 Msa0532550:intron 25.0%
! ATTGAGAAATCAAAATAGGA+AGG + chr4_1:6707911-6707930 None:intergenic 25.0%
!! TCTTTCTCAAATTTCTGTTT+TGG - chr4_1:6708095-6708114 Msa0532550:intron 25.0%
! AGACATAAATTTAAGGAAAG+AGG + chr4_1:6708277-6708296 None:intergenic 25.0%
! CGAAAACAGACATAAATTTA+AGG + chr4_1:6708284-6708303 None:intergenic 25.0%
!! GTTTTCGTGTATAATTTTTC+CGG - chr4_1:6708297-6708316 Msa0532550:intron 25.0%
! AATTGGAAGATATCCAATTA+GGG + chr4_1:6708625-6708644 None:intergenic 25.0%
! TAATTGGAAGATATCCAATT+AGG + chr4_1:6708626-6708645 None:intergenic 25.0%
!!! CCTAGAACTGATTTTATAAT+TGG + chr4_1:6708642-6708661 None:intergenic 25.0%
! CCAATTATAAAATCAGTTCT+AGG - chr4_1:6708639-6708658 Msa0532550:intron 25.0%
!!! ATTGACTAGTATTTTAGCTT+GGG + chr4_1:6708671-6708690 None:intergenic 25.0%
!!! AATTGACTAGTATTTTAGCT+TGG + chr4_1:6708672-6708691 None:intergenic 25.0%
! GGATATAGAGATGTTAAAAT+GGG + chr4_1:6708721-6708740 None:intergenic 25.0%
! TGGATATAGAGATGTTAAAA+TGG + chr4_1:6708722-6708741 None:intergenic 25.0%
! ATAAAATTTAGGAAGTCTAG+GGG + chr4_1:6708986-6709005 None:intergenic 25.0%
!! CATTTTATCATACTGTCATA+TGG + chr4_1:6709156-6709175 None:intergenic 25.0%
! AAATTATCAGTTCATAGACT+AGG + chr4_1:6709284-6709303 None:intergenic 25.0%
!!! GTGAAAGTATTTTGAACAAA+TGG - chr4_1:6709512-6709531 Msa0532550:intron 25.0%
! CATATTCATAAGTTGTATTC+AGG - chr4_1:6709548-6709567 Msa0532550:intron 25.0%
!! CTAATTATTTCTCACATTAC+AGG - chr4_1:6709695-6709714 Msa0532550:intron 25.0%
! TACCCTCATGAAAAATAATT+GGG + chr4_1:6709779-6709798 None:intergenic 25.0%
!! ATTGAAAGTATGATTCCAAT+TGG + chr4_1:6709855-6709874 None:intergenic 25.0%
! GAATCATACTTTCAATCTTA+AGG - chr4_1:6709859-6709878 Msa0532550:intron 25.0%
!!! AAGCAATTTTTTCAGGTAAA+GGG + chr4_1:6709899-6709918 None:intergenic 25.0%
! GGAATAAGAGTAATTAGAAA+AGG - chr4_1:6709939-6709958 Msa0532550:intron 25.0%
! ATAAAGAAATTGCTTGAAGA+AGG - chr4_1:6710167-6710186 Msa0532550:intron 25.0%
!!! AAGTTTGTTTTATGGAACAT+CGG - chr4_1:6710307-6710326 Msa0532550:intron 25.0%
! TTGAATGTACCAATTTAACA+AGG - chr4_1:6710498-6710517 Msa0532550:CDS 25.0%
! CGAAGAAAGATTAAAATTGA+AGG - chr4_1:6710570-6710589 Msa0532550:CDS 25.0%
!! TAGTTGATTTATGTTGTTGA+GGG - chr4_1:6710906-6710925 Msa0532550:CDS 25.0%
! AATGAAGTGTATTACAGTTA+TGG - chr4_1:6710992-6711011 Msa0532550:five_prime_UTR 25.0%
! CAAACTTATCTGCAAATTAA+TGG + chr4_1:6711103-6711122 None:intergenic 25.0%
!!! CATTAATTTGCAGATAAGTT+TGG - chr4_1:6711101-6711120 Msa0532550:five_prime_UTR 25.0%
!! GTTTTTAAAGGACGAAAGAT+GGG + chr4_1:6705986-6706005 None:intergenic 30.0%
! CTTGCTATAGAGATTATAGT+TGG + chr4_1:6706048-6706067 None:intergenic 30.0%
! TTTGCTAAGATGTTTTGTGA+GGG + chr4_1:6706090-6706109 None:intergenic 30.0%
AAAATTTCCTCCATTTGTCA+TGG - chr4_1:6706132-6706151 Msa0532550:three_prime_UTR 30.0%
AAATTTCCTCCATTTGTCAT+GGG - chr4_1:6706133-6706152 Msa0532550:three_prime_UTR 30.0%
GTACTACATTTAGAAATTGG+TGG + chr4_1:6706175-6706194 None:intergenic 30.0%
GAAATATATGAAAGGGACTA+AGG + chr4_1:6706329-6706348 None:intergenic 30.0%
GGTACGTGAAATATATGAAA+GGG + chr4_1:6706336-6706355 None:intergenic 30.0%
AGGTACGTGAAATATATGAA+AGG + chr4_1:6706337-6706356 None:intergenic 30.0%
!!! GATTAATGTTTTGATTGCCA+AGG + chr4_1:6706374-6706393 None:intergenic 30.0%
!! GCCATTTGTTAAGACATTTT+TGG - chr4_1:6706555-6706574 Msa0532550:CDS 30.0%
CCCAAAAATGTCTTAACAAA+TGG + chr4_1:6706559-6706578 None:intergenic 30.0%
! GAATTGATGGTTACAAAAAC+AGG - chr4_1:6706601-6706620 Msa0532550:CDS 30.0%
AGGCAGTTATGAAAGAATTT+GGG - chr4_1:6706680-6706699 Msa0532550:CDS 30.0%
AGTAACAATTTGCCTGATTT+GGG - chr4_1:6706703-6706722 Msa0532550:CDS 30.0%
! ATGGTTATCATGTATCGTTT+TGG - chr4_1:6707331-6707350 Msa0532550:CDS 30.0%
! TGGTTATCATGTATCGTTTT+GGG - chr4_1:6707332-6707351 Msa0532550:CDS 30.0%
TTAGTTGTGACAAATTAAGG+GGG - chr4_1:6707534-6707553 Msa0532550:intron 30.0%
!! ATTAAGGGGGTTTTATATCT+TGG - chr4_1:6707547-6707566 Msa0532550:intron 30.0%
TCTGTTTGAGAGTTTAAAAG+GGG + chr4_1:6707657-6707676 None:intergenic 30.0%
GTCTGTTTGAGAGTTTAAAA+GGG + chr4_1:6707658-6707677 None:intergenic 30.0%
!!! TGACTTTTCTGAAACAATTC+AGG - chr4_1:6707824-6707843 Msa0532550:intron 30.0%
!! TCTCAAATTTCTGTTTTGGA+TGG - chr4_1:6708099-6708118 Msa0532550:intron 30.0%
!! CTCAAATTTCTGTTTTGGAT+GGG - chr4_1:6708100-6708119 Msa0532550:intron 30.0%
ACCCAACATCAAAAAATTAG+GGG + chr4_1:6708213-6708232 None:intergenic 30.0%
CACCCAACATCAAAAAATTA+GGG + chr4_1:6708214-6708233 None:intergenic 30.0%
TCACCCAACATCAAAAAATT+AGG + chr4_1:6708215-6708234 None:intergenic 30.0%
CATAAATTTAAGGAAAGAGG+AGG + chr4_1:6708274-6708293 None:intergenic 30.0%
! CTATCTTTACTAGCTTGTAT+TGG - chr4_1:6708365-6708384 Msa0532550:intron 30.0%
CAATAAACACGATACTGATA+TGG - chr4_1:6708489-6708508 Msa0532550:intron 30.0%
!! ATTGAGTTGAGTTGGATTAT+AGG - chr4_1:6708689-6708708 Msa0532550:intron 30.0%
!! TTGAGTTGAGTTGGATTATA+GGG - chr4_1:6708690-6708709 Msa0532550:intron 30.0%
!! GAAAGAGTACTACTCATAAT+AGG + chr4_1:6708880-6708899 None:intergenic 30.0%
TTTCTAGATATCACAGATTC+AGG - chr4_1:6709028-6709047 Msa0532550:intron 30.0%
TTCTAGATATCACAGATTCA+GGG - chr4_1:6709029-6709048 Msa0532550:intron 30.0%
ATGAACTGATAATTTCCACA+TGG - chr4_1:6709289-6709308 Msa0532550:intron 30.0%
! GAAAACCTTAACTGTTTTGT+GGG + chr4_1:6709341-6709360 None:intergenic 30.0%
! AGAAAACCTTAACTGTTTTG+TGG + chr4_1:6709342-6709361 None:intergenic 30.0%
! CAAAACAGTTAAGGTTTTCT+AGG - chr4_1:6709342-6709361 Msa0532550:intron 30.0%
! AAGTTGTATTCAGGCTTTTT+AGG - chr4_1:6709557-6709576 Msa0532550:intron 30.0%
! TTATTTCTCACATTACAGGA+AGG - chr4_1:6709699-6709718 Msa0532550:intron 30.0%
!! AAGCCCAATTATTTTTCATG+AGG - chr4_1:6709773-6709792 Msa0532550:intron 30.0%
!! AGCCCAATTATTTTTCATGA+GGG - chr4_1:6709774-6709793 Msa0532550:intron 30.0%
CTACCCTCATGAAAAATAAT+TGG + chr4_1:6709780-6709799 None:intergenic 30.0%
!!! CAAGCAATTTTTTCAGGTAA+AGG + chr4_1:6709900-6709919 None:intergenic 30.0%
CTTTACCTGAAAAAATTGCT+TGG - chr4_1:6709898-6709917 Msa0532550:intron 30.0%
!!! TTGTACCAAGCAATTTTTTC+AGG + chr4_1:6709906-6709925 None:intergenic 30.0%
! TGCTCTTTTTGCAGAATTAA+CGG - chr4_1:6710250-6710269 Msa0532550:intron 30.0%
!! TTTTTGCAGAATTAACGGAT+AGG - chr4_1:6710255-6710274 Msa0532550:intron 30.0%
!!! ACGAAGCAAAGTTTGTTTTA+TGG - chr4_1:6710299-6710318 Msa0532550:intron 30.0%
GGATTCATGAACACAAAATA+AGG + chr4_1:6710356-6710375 None:intergenic 30.0%
AAGAAAGTGATCTCATAAGT+TGG + chr4_1:6710383-6710402 None:intergenic 30.0%
ATGTACCAATTTAACAAGGA+AGG - chr4_1:6710502-6710521 Msa0532550:CDS 30.0%
CTTATCCTTCCTTGTTAAAT+TGG + chr4_1:6710510-6710529 None:intergenic 30.0%
! GTAGTTGATTTATGTTGTTG+AGG - chr4_1:6710905-6710924 Msa0532550:CDS 30.0%
!! GGTTTTTAAAGGACGAAAGA+TGG + chr4_1:6705987-6706006 None:intergenic 35.0%
TTGTGAGGGAAATATGGAAT+TGG + chr4_1:6706076-6706095 None:intergenic 35.0%
! GATGTTTTGTGAGGGAAATA+TGG + chr4_1:6706082-6706101 None:intergenic 35.0%
!! GTTTGCTAAGATGTTTTGTG+AGG + chr4_1:6706091-6706110 None:intergenic 35.0%
TTAGAAATTGGTGGGAAAAG+TGG + chr4_1:6706166-6706185 None:intergenic 35.0%
ATTAATCTTCGTCACATTCG+CGG - chr4_1:6706387-6706406 Msa0532550:three_prime_UTR 35.0%
!! GACATTTTTGGGAGTAGATA+AGG - chr4_1:6706567-6706586 Msa0532550:CDS 35.0%
GAGGCAGTTATGAAAGAATT+TGG - chr4_1:6706679-6706698 Msa0532550:CDS 35.0%
GAGTAACAATTTGCCTGATT+TGG - chr4_1:6706702-6706721 Msa0532550:CDS 35.0%
TGACTTCATGTCTATTTGCA+AGG - chr4_1:6706750-6706769 Msa0532550:CDS 35.0%
!! GAGGATATTTTGGATGGTTT+GGG + chr4_1:6707502-6707521 None:intergenic 35.0%
!! ATACTGGAGGATATTTTGGA+TGG + chr4_1:6707508-6707527 None:intergenic 35.0%
CAAGAAAAGGAAGGATGAAA+TGG + chr4_1:6707624-6707643 None:intergenic 35.0%
GGTCTGTTTGAGAGTTTAAA+AGG + chr4_1:6707659-6707678 None:intergenic 35.0%
GACTCTAGTATGAACACTTA+AGG + chr4_1:6707680-6707699 None:intergenic 35.0%
GCGCACATACACATATATAT+GGG + chr4_1:6708040-6708059 None:intergenic 35.0%
TGCGCACATACACATATATA+TGG + chr4_1:6708041-6708060 None:intergenic 35.0%
!!! GCCCCTAATTTTTTGATGTT+GGG - chr4_1:6708209-6708228 Msa0532550:intron 35.0%
! TTCGTGTATAATTTTTCCGG+TGG - chr4_1:6708300-6708319 Msa0532550:intron 35.0%
AATGGACCATGGTTTGAATT+GGG + chr4_1:6708394-6708413 None:intergenic 35.0%
AAATGGACCATGGTTTGAAT+TGG + chr4_1:6708395-6708414 None:intergenic 35.0%
AGAGAACAAAAAATGGACCA+TGG + chr4_1:6708405-6708424 None:intergenic 35.0%
!! GACACGATACTTTTGATTGA+AGG + chr4_1:6708561-6708580 None:intergenic 35.0%
!! ACTAGTCAATTGAGTTGAGT+TGG - chr4_1:6708681-6708700 Msa0532550:intron 35.0%
TCACTATGTTGAGATGTGAT+TGG + chr4_1:6708742-6708761 None:intergenic 35.0%
GGTTGGACATGAGAAATTTA+TGG + chr4_1:6708859-6708878 None:intergenic 35.0%
GAGTACTACTCATAATAGGT+TGG + chr4_1:6708876-6708895 None:intergenic 35.0%
TTTATGTGGTACAAGCTGTA+CGG + chr4_1:6708907-6708926 None:intergenic 35.0%
ACAAGGATTGTGCTTTCTTA+TGG + chr4_1:6708957-6708976 None:intergenic 35.0%
AACTGATAATTTCCACATGG+AGG - chr4_1:6709292-6709311 Msa0532550:intron 35.0%
AAACCACCGATATAACTTCA+TGG - chr4_1:6709315-6709334 Msa0532550:intron 35.0%
! GAAGCTTGTTTCTTGGTAAT+GGG + chr4_1:6709752-6709771 None:intergenic 35.0%
! AGAAGCTTGTTTCTTGGTAA+TGG + chr4_1:6709753-6709772 None:intergenic 35.0%
! AGGTTAAGAGTGCAAATAGA+GGG + chr4_1:6709821-6709840 None:intergenic 35.0%
! AAGGTTAAGAGTGCAAATAG+AGG + chr4_1:6709822-6709841 None:intergenic 35.0%
TTGCACTCTTAACCTTCTTA+TGG - chr4_1:6709826-6709845 Msa0532550:intron 35.0%
!!! ACACCACTTTGACCTTTTTT+GGG + chr4_1:6709981-6710000 None:intergenic 35.0%
!!! AACACCACTTTGACCTTTTT+TGG + chr4_1:6709982-6710001 None:intergenic 35.0%
! CTGGATCTAAAACTGTTCTA+TGG + chr4_1:6710019-6710038 None:intergenic 35.0%
!! GTTTTAGATCCAGTTGTTAC+AGG - chr4_1:6710026-6710045 Msa0532550:intron 35.0%
GCACTAAACCTCAATAGAAA+CGG + chr4_1:6710233-6710252 None:intergenic 35.0%
TTTCTTGAATCAGTTGCCTT+TGG - chr4_1:6710397-6710416 Msa0532550:CDS 35.0%
GATAAGTATGCTATTCTTGC+AGG - chr4_1:6710524-6710543 Msa0532550:CDS 35.0%
TCGTCGCAAAATATCAAAGA+CGG - chr4_1:6710694-6710713 Msa0532550:CDS 35.0%
GAATTATCGACGGAAATTTC+AGG + chr4_1:6710750-6710769 None:intergenic 35.0%
ACATCACAAAGATGCACTAT+AGG + chr4_1:6710940-6710959 None:intergenic 35.0%
AGTGCATCTTTGTGATGTAA+AGG - chr4_1:6710942-6710961 Msa0532550:exon 35.0%
CTGATTGAGATGTAACAATG+TGG - chr4_1:6711026-6711045 Msa0532550:five_prime_UTR 35.0%
AGATGTAACAATGTGGCATA+TGG - chr4_1:6711033-6711052 Msa0532550:five_prime_UTR 35.0%
GATGTAACAATGTGGCATAT+GGG - chr4_1:6711034-6711053 Msa0532550:five_prime_UTR 35.0%
ATGGGATTCTTATGCACAAA+TGG - chr4_1:6711052-6711071 Msa0532550:five_prime_UTR 35.0%
TAAAGGACGAAAGATGGGTA+TGG + chr4_1:6705981-6706000 None:intergenic 40.0%
GTTATGATGAGAGAGAGAGA+GGG + chr4_1:6706016-6706035 None:intergenic 40.0%
TGTTATGATGAGAGAGAGAG+AGG + chr4_1:6706017-6706036 None:intergenic 40.0%
AATTGGTGGGAAAAGTGGAA+AGG + chr4_1:6706161-6706180 None:intergenic 40.0%
!!! TGTTTTGATTGCCAAGGTCT+CGG + chr4_1:6706368-6706387 None:intergenic 40.0%
TTAATCTTCGTCACATTCGC+GGG - chr4_1:6706388-6706407 Msa0532550:three_prime_UTR 40.0%
!! TGGAAGGTGTTCAATTCGTT+CGG - chr4_1:6706490-6706509 Msa0532550:three_prime_UTR 40.0%
TGATGGTTACAAAAACAGGG+AGG - chr4_1:6706605-6706624 Msa0532550:CDS 40.0%
GATGGTTACAAAAACAGGGA+GGG - chr4_1:6706606-6706625 Msa0532550:CDS 40.0%
! TGTTGGTGAACACAAGAAAG+AGG - chr4_1:6706660-6706679 Msa0532550:CDS 40.0%
!! AATTTGCCTGATTTGGGACT+GGG - chr4_1:6706709-6706728 Msa0532550:CDS 40.0%
CTAGATCCTCTTGTTACACA+TGG - chr4_1:6706929-6706948 Msa0532550:CDS 40.0%
CATGTTCCATGTGTAACAAG+AGG + chr4_1:6706938-6706957 None:intergenic 40.0%
!! TTTTGGGAGTAAGCTCTCTT+TGG - chr4_1:6707348-6707367 Msa0532550:CDS 40.0%
TTTGGGAGTAAGCTCTCTTT+GGG - chr4_1:6707349-6707368 Msa0532550:CDS 40.0%
! TTTGGATGGTTTGGGAGATT+CGG + chr4_1:6707494-6707513 None:intergenic 40.0%
!! GGAGGATATTTTGGATGGTT+TGG + chr4_1:6707503-6707522 None:intergenic 40.0%
!! AAGGGGGTTTTATATCTTGG+AGG - chr4_1:6707550-6707569 Msa0532550:intron 40.0%
TAGATGATTTCGAGAGCAGT+GGG + chr4_1:6707595-6707614 None:intergenic 40.0%
ATAGATGATTTCGAGAGCAG+TGG + chr4_1:6707596-6707615 None:intergenic 40.0%
GAGAGCTTTCAAGAAAAGGA+AGG + chr4_1:6707633-6707652 None:intergenic 40.0%
!!! GGCCCCTAATTTTTTGATGT+TGG - chr4_1:6708208-6708227 Msa0532550:intron 40.0%
AAGACATATGGAACAGACCA+GGG + chr4_1:6708342-6708361 None:intergenic 40.0%
AAAGACATATGGAACAGACC+AGG + chr4_1:6708343-6708362 None:intergenic 40.0%
ATGGACCATGGTTTGAATTG+GGG + chr4_1:6708393-6708412 None:intergenic 40.0%
!! TGTGTGTGTCACTTCTTCAT+AGG + chr4_1:6708467-6708486 None:intergenic 40.0%
AAGTCTAGGGGAATATCACA+AGG + chr4_1:6708974-6708993 None:intergenic 40.0%
! CAGGGACTTTTTGTTGAGTA+AGG - chr4_1:6709047-6709066 Msa0532550:intron 40.0%
TGTGGGCCATGAAGTTATAT+CGG + chr4_1:6709324-6709343 None:intergenic 40.0%
CACATTACAGGAAGGATACA+TGG - chr4_1:6709707-6709726 Msa0532550:intron 40.0%
!! TCTTGGTAATGGGTCACATT+TGG + chr4_1:6709742-6709761 None:intergenic 40.0%
!!! CAAATAGAGGGGTTGGTTTT+TGG + chr4_1:6709809-6709828 None:intergenic 40.0%
! GGTTAAGAGTGCAAATAGAG+GGG + chr4_1:6709820-6709839 None:intergenic 40.0%
ACCTTCTTATGGATGCCAAT+TGG - chr4_1:6709837-6709856 Msa0532550:intron 40.0%
TCCAATTGGCATCCATAAGA+AGG + chr4_1:6709841-6709860 None:intergenic 40.0%
AATGCAACTCCTGTAACAAC+TGG + chr4_1:6710038-6710057 None:intergenic 40.0%
GTTGTTACAGGAGTTGCATT+AGG - chr4_1:6710038-6710057 Msa0532550:intron 40.0%
AAGGGAAAGAGATAGAGATG+CGG - chr4_1:6710139-6710158 Msa0532550:intron 40.0%
! AGGTGACTTAGTGATTTGTC+CGG - chr4_1:6710187-6710206 Msa0532550:intron 40.0%
GTAGAGAACCGTTTCTATTG+AGG - chr4_1:6710222-6710241 Msa0532550:intron 40.0%
! GTGATCTCATAAGTTGGCAT+AGG + chr4_1:6710377-6710396 None:intergenic 40.0%
TCAGGCGAAAACGATAAAAC+TGG + chr4_1:6710732-6710751 None:intergenic 40.0%
! GAGGGTGAAGGGGTTTTTAA+AGG + chr4_1:6705998-6706017 None:intergenic 45.0%
AGATAGATCAAACCAGACCG+TGG - chr4_1:6706198-6706217 Msa0532550:three_prime_UTR 45.0%
TAATCTTCGTCACATTCGCG+GGG - chr4_1:6706389-6706408 Msa0532550:three_prime_UTR 45.0%
! GAGACGTGGAGATTGTTTCT+CGG - chr4_1:6706422-6706441 Msa0532550:three_prime_UTR 45.0%
TTGAACACCTTCCATGTCTC+TGG + chr4_1:6706484-6706503 None:intergenic 45.0%
!! GGAAGGTGTTCAATTCGTTC+GGG - chr4_1:6706491-6706510 Msa0532550:three_prime_UTR 45.0%
CGGGAAACGATACATTGTCA+CGG - chr4_1:6706510-6706529 Msa0532550:exon 45.0%
AATGGCTCAACCATCAACCT+TGG + chr4_1:6706541-6706560 None:intergenic 45.0%
! TTGGGAGTAGATAAGGTGCT+AGG - chr4_1:6706574-6706593 Msa0532550:CDS 45.0%
! TGGGAGTAGATAAGGTGCTA+GGG - chr4_1:6706575-6706594 Msa0532550:CDS 45.0%
!! AGTGGGTTTGTTAAGGAACC+AGG - chr4_1:6706631-6706650 Msa0532550:CDS 45.0%
AAGGAACCAGGAGTTCTTGT+TGG - chr4_1:6706643-6706662 Msa0532550:CDS 45.0%
TGTTCACCAACAAGAACTCC+TGG + chr4_1:6706652-6706671 None:intergenic 45.0%
!! CAATTTGCCTGATTTGGGAC+TGG - chr4_1:6706708-6706727 Msa0532550:CDS 45.0%
GAAAGGAAGGGGAGAACTTT+GGG - chr4_1:6707383-6707402 Msa0532550:intron 45.0%
AAAGGAAGGGGAGAACTTTG+GGG - chr4_1:6707384-6707403 Msa0532550:intron 45.0%
!! TTCGAGAGCAGTGGGTTTTT+GGG + chr4_1:6707587-6707606 None:intergenic 45.0%
!! TTTCGAGAGCAGTGGGTTTT+TGG + chr4_1:6707588-6707607 None:intergenic 45.0%
GGGAGAGAGCTTTCAAGAAA+AGG + chr4_1:6707637-6707656 None:intergenic 45.0%
AGACATATGGAACAGACCAG+GGG + chr4_1:6708341-6708360 None:intergenic 45.0%
TGGACCATGGTTTGAATTGG+GGG + chr4_1:6708392-6708411 None:intergenic 45.0%
!! GTGTGTCACTTCTTCATAGG+TGG + chr4_1:6708464-6708483 None:intergenic 45.0%
CATGGCCCACAAAACAGTTA+AGG - chr4_1:6709333-6709352 Msa0532550:intron 45.0%
AGGAAGGATACATGGTACCA+AGG - chr4_1:6709715-6709734 Msa0532550:intron 45.0%
AATGGGTCACATTTGGTCCT+TGG + chr4_1:6709735-6709754 None:intergenic 45.0%
! GGGCTTAGAAGCTTGTTTCT+TGG + chr4_1:6709759-6709778 None:intergenic 45.0%
! AAGAGTGCAAATAGAGGGGT+TGG + chr4_1:6709816-6709835 None:intergenic 45.0%
!!! CTTTGACCTTTTTTGGGTGG+TGG + chr4_1:6709975-6709994 None:intergenic 45.0%
!!! CCACTTTGACCTTTTTTGGG+TGG + chr4_1:6709978-6709997 None:intergenic 45.0%
CCACCCAAAAAAGGTCAAAG+TGG - chr4_1:6709975-6709994 Msa0532550:intron 45.0%
!! GAAAGCGCAACGGCTTTTAT+AGG + chr4_1:6710119-6710138 None:intergenic 45.0%
TAAAAGCCGTTGCGCTTTCA+AGG - chr4_1:6710120-6710139 Msa0532550:intron 45.0%
AAAAGCCGTTGCGCTTTCAA+GGG - chr4_1:6710121-6710140 Msa0532550:intron 45.0%
! TCTTTCCCTTGAAAGCGCAA+CGG + chr4_1:6710129-6710148 None:intergenic 45.0%
! GACTTAGTGATTTGTCCGGA+AGG - chr4_1:6710191-6710210 Msa0532550:intron 45.0%
TCTCTACATGTCGTTCCTTC+CGG + chr4_1:6710209-6710228 None:intergenic 45.0%
GCTTCGTATTAATCGCGACA+GGG + chr4_1:6710286-6710305 None:intergenic 45.0%
TGCTTCGTATTAATCGCGAC+AGG + chr4_1:6710287-6710306 None:intergenic 45.0%
!!! TTTTATGGAACATCGGCTCG+CGG - chr4_1:6710314-6710333 Msa0532550:intron 45.0%
CCACTGCAAGTCAATTCCAA+AGG + chr4_1:6710416-6710435 None:intergenic 45.0%
!! CCTTTGGAATTGACTTGCAG+TGG - chr4_1:6710413-6710432 Msa0532550:CDS 45.0%
!! TTGGAATTGACTTGCAGTGG+AGG - chr4_1:6710416-6710435 Msa0532550:CDS 45.0%
!! TGGAATTGACTTGCAGTGGA+GGG - chr4_1:6710417-6710436 Msa0532550:CDS 45.0%
GCTATTCTTGCAGGAACAGA+TGG - chr4_1:6710533-6710552 Msa0532550:CDS 45.0%
!! ATAAAATTTAATTACATTTA+TGG - chr4_1:6709107-6709126 Msa0532550:intron 5.0%
TGAGAGAGAGAGAGGGTGAA+GGG + chr4_1:6706009-6706028 None:intergenic 50.0%
ATGAGAGAGAGAGAGGGTGA+AGG + chr4_1:6706010-6706029 None:intergenic 50.0%
AAGGCTCCCATGACAAATGG+AGG + chr4_1:6706142-6706161 None:intergenic 50.0%
GGAAAGGCTCCCATGACAAA+TGG + chr4_1:6706145-6706164 None:intergenic 50.0%
ACCGTGGCATCTGACTTAGA+CGG - chr4_1:6706214-6706233 Msa0532550:three_prime_UTR 50.0%
AGTGCGACGAGCATGTAGTA+TGG + chr4_1:6706268-6706287 None:intergenic 50.0%
CCAAGGTCTCGGAGACAAAT+AGG + chr4_1:6706357-6706376 None:intergenic 50.0%
CCTATTTGTCTCCGAGACCT+TGG - chr4_1:6706354-6706373 Msa0532550:three_prime_UTR 50.0%
TTTCTCGGTCAGTGTTGCCT+AGG - chr4_1:6706437-6706456 Msa0532550:three_prime_UTR 50.0%
! ACATTGTCACGGCTAGTCCA+AGG - chr4_1:6706521-6706540 Msa0532550:CDS 50.0%
GGTGCTAGGGACTGAATTGA+TGG - chr4_1:6706588-6706607 Msa0532550:CDS 50.0%
ACAAAAACAGGGAGGGCAAG+TGG - chr4_1:6706613-6706632 Msa0532550:CDS 50.0%
CAAAAACAGGGAGGGCAAGT+GGG - chr4_1:6706614-6706633 Msa0532550:CDS 50.0%
!! GAGGGCAAGTGGGTTTGTTA+AGG - chr4_1:6706624-6706643 Msa0532550:CDS 50.0%
GGAAAGGAAGGGGAGAACTT+TGG - chr4_1:6707382-6707401 Msa0532550:intron 50.0%
!! TCGAGAGCAGTGGGTTTTTG+GGG + chr4_1:6707586-6707605 None:intergenic 50.0%
!!! GAGCAGTTTTGTTAGGCCAC+CGG + chr4_1:6708319-6708338 None:intergenic 50.0%
!!! ACCAGGGGAGCAGTTTTGTT+AGG + chr4_1:6708326-6708345 None:intergenic 50.0%
TGGTCCCCCAATTCAAACCA+TGG - chr4_1:6708385-6708404 Msa0532550:intron 50.0%
TATCGGTGGTTTCCTCCATG+TGG + chr4_1:6709307-6709326 None:intergenic 50.0%
GGGCCATGAAGTTATATCGG+TGG + chr4_1:6709321-6709340 None:intergenic 50.0%
!!! TGACCTTTTTTGGGTGGTGG+TGG + chr4_1:6709972-6709991 None:intergenic 50.0%
GAGAGAGAGAGAGGGTGAAG+GGG + chr4_1:6706008-6706027 None:intergenic 55.0%
CTAAGTCAGATGCCACGGTC+TGG + chr4_1:6706213-6706232 None:intergenic 55.0%
GCCGTCTAAGTCAGATGCCA+CGG + chr4_1:6706218-6706237 None:intergenic 55.0%
TGCACTTCGCGACACGAGAA+GGG + chr4_1:6706242-6706261 None:intergenic 55.0%
ATGCACTTCGCGACACGAGA+AGG + chr4_1:6706243-6706262 None:intergenic 55.0%
ATGCTCGTCGCACTTGAAGC+TGG - chr4_1:6706274-6706293 Msa0532550:three_prime_UTR 55.0%
GGGGCTAAGGATAAGAGACG+TGG - chr4_1:6706408-6706427 Msa0532550:three_prime_UTR 55.0%
GTTGCCTAGGTTCTATGCCG+AGG - chr4_1:6706450-6706469 Msa0532550:three_prime_UTR 55.0%
ACGTCCTCGGCATAGAACCT+AGG + chr4_1:6706457-6706476 None:intergenic 55.0%
TGTCTCTGGATGCACGTCCT+CGG + chr4_1:6706470-6706489 None:intergenic 55.0%
AGGACGTGCATCCAGAGACA+TGG - chr4_1:6706470-6706489 Msa0532550:three_prime_UTR 55.0%
CGTGCATCCAGAGACATGGA+AGG - chr4_1:6706474-6706493 Msa0532550:three_prime_UTR 55.0%
! CACGGCTAGTCCAAGGTTGA+TGG - chr4_1:6706528-6706547 Msa0532550:CDS 55.0%
CTGTCTCCCAGTCCCAAATC+AGG + chr4_1:6706718-6706737 None:intergenic 55.0%
! AGCTCTCTTTGGGAGTCTCG+AGG - chr4_1:6707359-6707378 Msa0532550:CDS 55.0%
! GCTCTCTTTGGGAGTCTCGA+GGG - chr4_1:6707360-6707379 Msa0532550:CDS 55.0%
! CTCTCTTTGGGAGTCTCGAG+GGG - chr4_1:6707361-6707380 Msa0532550:CDS 55.0%
TTTGGGAGTCTCGAGGGGAA+AGG - chr4_1:6707366-6707385 Msa0532550:intron 55.0%
GAGTCTCGAGGGGAAAGGAA+GGG - chr4_1:6707371-6707390 Msa0532550:intron 55.0%
AGTCTCGAGGGGAAAGGAAG+GGG - chr4_1:6707372-6707391 Msa0532550:intron 55.0%
!! GAGAGCAGTGGGTTTTTGGG+GGG + chr4_1:6707584-6707603 None:intergenic 55.0%
!! CGAGAGCAGTGGGTTTTTGG+GGG + chr4_1:6707585-6707604 None:intergenic 55.0%
GCCTAACAAAACTGCTCCCC+TGG - chr4_1:6708322-6708341 Msa0532550:intron 55.0%
GTGGTACAAGCTGTACGGCT+TGG + chr4_1:6708902-6708921 None:intergenic 55.0%
!!! CCTTTTTTGGGTGGTGGTGG+AGG + chr4_1:6709969-6709988 None:intergenic 55.0%
CCTCCACCACCACCCAAAAA+AGG - chr4_1:6709966-6709985 Msa0532550:intron 55.0%
GGCTCGCGGACACAAATTGT+TGG - chr4_1:6710328-6710347 Msa0532550:CDS 55.0%
AGGGTTCTTGGAGGGACTCT+TGG - chr4_1:6710473-6710492 Msa0532550:CDS 55.0%
TCGTCACATTCGCGGGGCTA+AGG - chr4_1:6706395-6706414 Msa0532550:three_prime_UTR 60.0%
GGAGTCTCGAGGGGAAAGGA+AGG - chr4_1:6707370-6707389 Msa0532550:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6705973 6711124 6705973 ID=Msa0532550;Name=Msa0532550
chr4_1 mRNA 6705973 6711124 6705973 ID=Msa0532550-mRNA-1;Parent=Msa0532550;Name=Msa0532550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=178|1|1|1|1|1|2|541|495
chr4_1 exon 6705973 6707380 6705973 ID=Msa0532550-mRNA-1:exon:2386;Parent=Msa0532550-mRNA-1
chr4_1 exon 6710326 6711124 6710326 ID=Msa0532550-mRNA-1:exon:2385;Parent=Msa0532550-mRNA-1
chr4_1 five_prime_UTR 6710947 6711124 6710947 ID=Msa0532550-mRNA-1:five_prime_utr;Parent=Msa0532550-mRNA-1
chr4_1 CDS 6710326 6710946 6710326 ID=Msa0532550-mRNA-1:cds;Parent=Msa0532550-mRNA-1
chr4_1 CDS 6706514 6707380 6706514 ID=Msa0532550-mRNA-1:cds;Parent=Msa0532550-mRNA-1
chr4_1 three_prime_UTR 6705973 6706513 6705973 ID=Msa0532550-mRNA-1:three_prime_utr;Parent=Msa0532550-mRNA-1
Gene Sequence

>Msa0532550

ATGGGAGCCTTTCCACTTTTCCCACCAATTTCTAAATGTAGTACAAAAGATAGATCAAACCAGACCGTGGCATCTGACTTAGACGGCACCCTTCTCGTGTCGCGAAGTGCATTTCCATACTACATGCTCGTCGCACTTGAAGCTGGAAGCATTCTAAGAGCTTTAATTCTCTTATCCTTAGTCCCTTTCATATATTTCACGTACCTATTTGTCTCCGAGACCTTGGCAATCAAAACATTAATCTTCGTCACATTCGCGGGGCTAAGGATAAGAGACGTGGAGATTGTTTCTCGGTCAGTGTTGCCTAGGTTCTATGCCGAGGACGTGCATCCAGAGACATGGAAGGTGTTCAATTCGTTCGGGAAACGATACATTGTCACGGCTAGTCCAAGGTTGATGGTTGAGCCATTTGTTAAGACATTTTTGGGAGTAGATAAGGTGCTAGGGACTGAATTGATGGTTACAAAAACAGGGAGGGCAAGTGGGTTTGTTAAGGAACCAGGAGTTCTTGTTGGTGAACACAAGAAAGAGGCAGTTATGAAAGAATTTGGGAGTAACAATTTGCCTGATTTGGGACTGGGAGACAGTGTAACTGACTCTGACTTCATGTCTATTTGCAAGGAAGGATACATGGTACCAAGGACCAAATGTGACCCATTACCAAGAAACAAGCTTCTAAGCCCAATTATTTTTCATGAGGGTAGATTAGTCCAAAAACCAACCCCTCTATTTGCACTCTTAACCTTCTTATGGATGCCAATTGGAATCATACTTTCAATCTTAAGGGTGTATCTCAACATCCCTTTACCTGAAAAAATTGCTTGGTACAATTATAAATTACTTGGAATAAGAGTAATTAGAAAAGGTACACCTCCACCACCACCCAAAAAAGGTCAAAGTGGTGTTCTATTTGTTTGCAACCATAGAACAGTTTTAGATCCAGTTGTTACAGGAGTTGCATTAGGAAGAAAAATAAGTTGTGTAACTTATAGTATAAGTAAATTCACCGAAATAATTTCGCCTATAAAAGCCGTTGCGCTTTCAAGGGAAAGAGATAGAGATGCGGCAAATATAAAGAAATTGCTTGAAGAAGGTGACTTAGTGATTTGTCCGGAAGGAACGACATGTAGAGAACCGTTTCTATTGAGGTTTAGTGCTCTTTTTGCAGAATTAACGGATAGGATTGTCCCTGTCGCGATTAATACGAAGCAAAGTTTGTTTTATGGAACATCGGCTCGCGGACACAAATTGTTGGATCCTTATTTTGTGTTCATGAATCCTATGCCAACTTATGAGATCACTTTCTTGAATCAGTTGCCTTTGGAATTGACTTGCAGTGGAGGGAAATCTTCAATTGAAGTTGCAAATTATATTCAAAGGGTTCTTGGAGGGACTCTTGGATTTGAATGTACCAATTTAACAAGGAAGGATAAGTATGCTATTCTTGCAGGAACAGATGGAATTGTTAGATCTACGAAGAAAGATTAA
Protein sequence

>Msa0532550

MGAFPLFPPISKCSTKDRSNQTVASDLDGTLLVSRSAFPYYMLVALEAGSILRALILLSLVPFIYFTYLFVSETLAIKTLIFVTFAGLRIRDVEIVSRSVLPRFYAEDVHPETWKVFNSFGKRYIVTASPRLMVEPFVKTFLGVDKVLGTELMVTKTGRASGFVKEPGVLVGEHKKEAVMKEFGSNNLPDLGLGDSVTDSDFMSICKEGYMVPRTKCDPLPRNKLLSPIIFHEGRLVQKPTPLFALLTFLWMPIGIILSILRVYLNIPLPEKIAWYNYKLLGIRVIRKGTPPPPPKKGQSGVLFVCNHRTVLDPVVTGVALGRKISCVTYSISKFTEIISPIKAVALSRERDRDAANIKKLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSLFYGTSARGHKLLDPYFVFMNPMPTYEITFLNQLPLELTCSGGKSSIEVANYIQRVLGGTLGFECTNLTRKDKYAILAGTDGIVRSTKKD*