AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667470 MtrunA17_Chr4g0005991 99.394 495 3 0 1 495 1 495 0.0 1000
Msa0667470 MtrunA17_Chr7g0241831 84.242 495 76 2 1 494 3 496 0.0 854
Msa0667470 MtrunA17_Chr8g0348781 62.118 491 179 5 7 491 10 499 0.0 633
Msa0667470 MtrunA17_Chr1g0170421 57.895 494 200 5 7 494 41 532 0.0 590
Msa0667470 MtrunA17_Chr5g0435581 51.046 478 224 4 21 492 2 475 2.36e-164 474
Msa0667470 MtrunA17_Chr5g0443341 50.713 491 226 7 7 491 51 531 5.53e-163 472
Msa0667470 MtrunA17_Chr3g0096481 48.193 498 233 9 7 493 46 529 2.80e-155 452
Msa0667470 MtrunA17_Chr1g0194391 43.542 480 254 8 17 489 60 529 2.05e-127 381
Msa0667470 MtrunA17_Chr5g0425071 42.387 486 265 8 15 494 10 486 1.67e-121 364
Msa0667470 MtrunA17_Chr3g0096591 52.920 274 122 2 220 489 1 271 7.78e-99 298
Msa0667470 MtrunA17_Chr3g0096581 40.291 206 113 5 8 212 51 247 1.94e-41 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667470 AT2G38110.1 80.000 485 95 1 7 489 10 494 0.0 791
Msa0667470 AT4G00400.1 61.680 488 181 5 7 491 10 494 0.0 605
Msa0667470 AT1G01610.1 61.382 492 183 6 7 494 10 498 0.0 598
Msa0667470 AT3G11430.1 51.346 483 213 5 19 489 9 481 7.52e-166 478
Msa0667470 AT5G06090.1 48.560 486 222 6 19 489 7 479 1.17e-152 445
Msa0667470 AT1G06520.1 44.961 516 248 11 5 490 76 585 6.50e-147 433
Msa0667470 AT1G02390.1 39.468 489 276 9 16 490 46 528 1.36e-110 338
Msa0667470 AT4G01950.1 39.351 493 269 11 17 492 41 520 7.52e-108 331
Msa0667470 AT4G01950.2 39.351 493 269 11 17 492 69 548 1.50e-107 331
Msa0667470 AT3G11325.2 49.237 262 100 1 228 489 144 372 9.97e-84 264
Msa0667470 AT3G11325.2 37.143 105 66 0 31 135 9 113 2.42e-16 81.3
Msa0667470 AT3G11325.1 49.237 262 100 1 228 489 141 369 1.42e-83 264
Msa0667470 AT3G11325.1 37.143 105 66 0 31 135 6 110 2.69e-16 81.3

Find 132 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCCTTCCTTGTTAAAT+TGG 0.158055 4_4:+7793368 None:intergenic
GAGGCAGTTATGAAAGAATT+TGG 0.160182 4_4:-7797289 Msa0667470:CDS
TTGCACTCTTAACCTTCTTA+TGG 0.235930 4_4:-7794049 Msa0667470:CDS
CAAACTTATCTGCAAATTAA+TGG 0.250410 4_4:+7792774 None:intergenic
GAATCATACTTTCAATCTTA+AGG 0.293063 4_4:-7794016 Msa0667470:CDS
GAGTAACAATTTGCCTGATT+TGG 0.303564 4_4:-7797266 Msa0667470:CDS
AATTATATTCAAAGGGTTCT+TGG 0.305203 4_4:-7793414 Msa0667470:CDS
AGAAGCTTGTTTCTTGGTAA+TGG 0.311340 4_4:+7794125 None:intergenic
CATTAATTTGCAGATAAGTT+TGG 0.328455 4_4:-7792773 Msa0667470:three_prime_UTR
TCTACAAAGAAAGATTAAAA+TGG 0.334837 4_4:-7793309 Msa0667470:exon
GGGCTTAGAAGCTTGTTTCT+TGG 0.336364 4_4:+7794119 None:intergenic
TTTCTTGAATCAGTTGCCTT+TGG 0.341998 4_4:-7793478 Msa0667470:CDS
AGTAACAATTTGCCTGATTT+GGG 0.342680 4_4:-7797265 Msa0667470:CDS
AATCATACTTTCAATCTTAA+GGG 0.343266 4_4:-7794015 Msa0667470:CDS
CACATTACAGGAAGGATATA+TGG 0.345834 4_4:-7794168 Msa0667470:intron
AGGGTTCTTGGAGGGACTCT+TGG 0.352717 4_4:-7793402 Msa0667470:CDS
AATGAAATGTATTACAGTTA+TGG 0.352845 4_4:-7792882 Msa0667470:three_prime_UTR
GATAAGTATGCTATTCTTGC+TGG 0.355254 4_4:-7793351 Msa0667470:CDS
GGATTCATGAACACAAAATA+AGG 0.356896 4_4:+7793522 None:intergenic
CCAAGGTCTCGGAGACAAAT+AGG 0.357156 4_4:+7797614 None:intergenic
TTTGTGCTACATTTGGAAAT+TGG 0.360873 4_4:+7797793 None:intergenic
GAAGCTTGTTTCTTGGTAAT+GGG 0.362820 4_4:+7794126 None:intergenic
TGGAAAGTGTTCAATTCGTT+CGG 0.372012 4_4:-7797478 Msa0667470:CDS
ACATCACAAAGATGCACTAT+AGG 0.372868 4_4:+7792937 None:intergenic
AGGCAGTTATGAAAGAATTT+GGG 0.373459 4_4:-7797288 Msa0667470:CDS
TCTTGGTAATGGGTCACATT+TGG 0.374038 4_4:+7794136 None:intergenic
TTGAACACTTTCCATGTCTC+TGG 0.382477 4_4:+7797487 None:intergenic
TCTCTACAAGTCGTTCCTTC+CGG 0.391720 4_4:+7793669 None:intergenic
GTTGTTACAGGAGTTGCATT+AGG 0.394796 4_4:-7793837 Msa0667470:CDS
TAAAAGCCGTTGCGCTTTCA+AGG 0.395510 4_4:-7793755 Msa0667470:CDS
CTGGATCTAAAACTGTTCTA+TGG 0.403705 4_4:+7793859 None:intergenic
GAGGGCAAGTGGGTTTGTTA+AGG 0.407100 4_4:-7797344 Msa0667470:CDS
TCAGACGAAAATAATAAAAC+TGG 0.410035 4_4:+7793146 None:intergenic
TTGGAAATTGGTGGGAAAAG+TGG 0.411232 4_4:+7797805 None:intergenic
TGGTACAATTATAAATTACT+TGG 0.415906 4_4:-7793957 Msa0667470:CDS
ACCTTCTTATGGATGCCAAT+TGG 0.419088 4_4:-7794038 Msa0667470:CDS
GGAAAGTGTTCAATTCGTTC+GGG 0.425126 4_4:-7797477 Msa0667470:CDS
AGTGCGACGAGCATGTAGTA+TGG 0.432920 4_4:+7797703 None:intergenic
AATGCAACTCCTGTAACAAC+TGG 0.433295 4_4:+7793840 None:intergenic
CACGGCTAGTCCAAGGTTGA+TGG 0.435779 4_4:-7797440 Msa0667470:CDS
GTAGAGAACCATTTCTATTG+AGG 0.438636 4_4:-7793653 Msa0667470:CDS
AATGGGTCACATTTGGTCCT+TGG 0.442068 4_4:+7794143 None:intergenic
GCACTAAACCTCAATAGAAA+TGG 0.442088 4_4:+7793645 None:intergenic
ATTGAAAGTATGATTCCAAT+TGG 0.443499 4_4:+7794023 None:intergenic
CTGTCTCCCAGTCCCAAATC+AGG 0.448486 4_4:+7797253 None:intergenic
CAATTTGCCTGATTTGGGAC+TGG 0.449611 4_4:-7797260 Msa0667470:CDS
ACACGAGAAGGGTGCCATCT+AGG 0.454550 4_4:+7797740 None:intergenic
ATGCTCGTCGCACTCGAAGC+TGG 0.455449 4_4:-7797694 Msa0667470:CDS
AAGAGTGCAAATAGAGGGGT+TGG 0.455638 4_4:+7794062 None:intergenic
ATGGGATTCTTATGCACAAA+TGG 0.458400 4_4:-7792822 Msa0667470:three_prime_UTR
TCCAATTGGCATCCATAAGA+AGG 0.458669 4_4:+7794037 None:intergenic
GGTGCTAGGGACTGAATTGA+TGG 0.464183 4_4:-7797380 Msa0667470:CDS
AACTTTGAAATTAAACATCA+TGG 0.466576 4_4:+7793082 None:intergenic
AGATGTAACAATGTGGCATA+TGG 0.467889 4_4:-7792841 Msa0667470:three_prime_UTR
AATTTGCCTGATTTGGGACT+GGG 0.468437 4_4:-7797259 Msa0667470:CDS
AAGGAACCAGGAGTTCTTGT+TGG 0.472018 4_4:-7797325 Msa0667470:CDS
TAGTTGATTTATGTTGTTGA+GGG 0.473744 4_4:-7792968 Msa0667470:three_prime_UTR
TGCTTCGTATTAATCGCGAC+AGG 0.478003 4_4:+7793591 None:intergenic
TTTCTCGGTCAGTGTTGCCT+AGG 0.478351 4_4:-7797531 Msa0667470:CDS
CTAGGTCGGATGCCACGGTT+TGG 0.479842 4_4:+7797758 None:intergenic
TTGTCACATTCGCGGGGCTA+AGG 0.481220 4_4:-7797573 Msa0667470:CDS
TTGGGAGTAGATAAGGTGCT+AGG 0.486623 4_4:-7797394 Msa0667470:CDS
GCTATTCTTGCTGGAACAGA+TGG 0.489821 4_4:-7793342 Msa0667470:CDS
GAAATATACGAAAGGGACTA+AGG 0.490330 4_4:+7797642 None:intergenic
CCTTTGGAATTGACTTGCAG+TGG 0.493619 4_4:-7793462 Msa0667470:CDS
GAGAGAGAGAGCGGGTGAAG+GGG 0.495630 4_4:+7797965 None:intergenic
TTAATCTTTGTCACATTCGC+GGG 0.496943 4_4:-7797580 Msa0667470:CDS
ATAAAGAAATTGCTTGAAGA+AGG 0.497977 4_4:-7793708 Msa0667470:CDS
GGCTCGCGGACACAAATTGT+TGG 0.498712 4_4:-7793547 Msa0667470:CDS
TTGTGAGGGAAATATGGAAT+TGG 0.500040 4_4:+7797895 None:intergenic
AGTTGCAAATTATATTCAAA+GGG 0.504087 4_4:-7793421 Msa0667470:CDS
AAGTTGCAAATTATATTCAA+AGG 0.504845 4_4:-7793422 Msa0667470:CDS
AGTGCATCTTTGTGATGTAA+AGG 0.507474 4_4:-7792932 Msa0667470:three_prime_UTR
TGTTCACCAACAAGAACTCC+TGG 0.509031 4_4:+7797319 None:intergenic
AAGAAAGTGATCTCATAAGT+TGG 0.509395 4_4:+7793495 None:intergenic
GCCATCTAGGTCGGATGCCA+CGG 0.509743 4_4:+7797753 None:intergenic
GGAATAAGAGTAATTAGAAA+AGG 0.510705 4_4:-7793936 Msa0667470:CDS
CCTATTTGTCTCCGAGACCT+TGG 0.512360 4_4:-7797614 Msa0667470:CDS
CTAGCTATAGAGATTATAGT+TGG 0.518502 4_4:+7797923 None:intergenic
AGGTTAAGAGTGCAAATAGA+GGG 0.520148 4_4:+7794057 None:intergenic
TAAAGGACGAAAGATGGGTA+TGG 0.520755 4_4:+7797992 None:intergenic
AGGTGACTTAGTGATTTGTC+CGG 0.526292 4_4:-7793688 Msa0667470:CDS
AAGACGTGGAGATTGTTTCT+CGG 0.526609 4_4:-7797546 Msa0667470:CDS
AAGGTTAAGAGTGCAAATAG+AGG 0.530421 4_4:+7794056 None:intergenic
CAAAGAAAGATTAAAATGGA+AGG 0.538152 4_4:-7793305 Msa0667470:exon
TGACTTCATGTCTATTTGCA+AGG 0.539001 4_4:-7797218 Msa0667470:intron
GGAAAGGCTCCCATGACAAA+GGG 0.539104 4_4:+7797826 None:intergenic
ATATTCAAAGGGTTCTTGGA+GGG 0.546066 4_4:-7793410 Msa0667470:CDS
ATGCACTTCGCGACACGAGA+AGG 0.548044 4_4:+7797728 None:intergenic
TGTTGGTGAACACAAGAAAG+AGG 0.548662 4_4:-7797308 Msa0667470:CDS
TGGGAGTAGATAAGGTGCTA+GGG 0.549005 4_4:-7797393 Msa0667470:CDS
TGCTACATTTGGAAATTGGT+GGG 0.549882 4_4:+7797797 None:intergenic
GTAGTTGATTTATGTTGTTG+AGG 0.551188 4_4:-7792969 Msa0667470:three_prime_UTR
AGTGGGTTTGTTAAGGAACC+AGG 0.551989 4_4:-7797337 Msa0667470:CDS
AATGGCTCAACCATCAACCT+TGG 0.553342 4_4:+7797430 None:intergenic
TGTCTCTGGATGCACGTCCT+CGG 0.553696 4_4:+7797501 None:intergenic
GGTACGTGAAATATACGAAA+GGG 0.556590 4_4:+7797635 None:intergenic
ATGTACCAATTTAACAAGGA+AGG 0.557734 4_4:-7793373 Msa0667470:CDS
TATATTCAAAGGGTTCTTGG+AGG 0.558009 4_4:-7793411 Msa0667470:CDS
AAAAGCCGTTGCGCTTTCAA+GGG 0.561930 4_4:-7793754 Msa0667470:CDS
TGGAATTGACTTGCAGTGGA+GGG 0.564415 4_4:-7793458 Msa0667470:CDS
TTGGAATTGACTTGCAGTGG+AGG 0.574024 4_4:-7793459 Msa0667470:CDS
GACAATCCTATCCGTTAACT+CGG 0.578226 4_4:+7793614 None:intergenic
ATTAATCTTTGTCACATTCG+CGG 0.578687 4_4:-7797581 Msa0667470:CDS
GTGCTACATTTGGAAATTGG+TGG 0.579404 4_4:+7797796 None:intergenic
GTGATCTCATAAGTTGGCAT+AGG 0.582217 4_4:+7793501 None:intergenic
TGGAAAGGCTCCCATGACAA+AGG 0.584665 4_4:+7797825 None:intergenic
AAAGAAAGATTAAAATGGAA+GGG 0.587213 4_4:-7793304 Msa0667470:exon
ACCGTGGCATCCGACCTAGA+TGG 0.591495 4_4:-7797754 Msa0667470:CDS
GGTTAAGAGTGCAAATAGAG+GGG 0.592460 4_4:+7794058 None:intergenic
TGCACTTCGCGACACGAGAA+GGG 0.596300 4_4:+7797729 None:intergenic
AGGACGTGCATCCAGAGACA+TGG 0.604083 4_4:-7797498 Msa0667470:CDS
TCTTTCCCTTGAAAGCGCAA+CGG 0.605263 4_4:+7793749 None:intergenic
AGGTACGTGAAATATACGAA+AGG 0.608258 4_4:+7797634 None:intergenic
GAGAAGGGTGCCATCTAGGT+CGG 0.614645 4_4:+7797744 None:intergenic
ACATTGTCACGGCTAGTCCA+AGG 0.617998 4_4:-7797447 Msa0667470:CDS
TCGTCGCTAAATATCAAAGA+CGG 0.625583 4_4:-7793181 Msa0667470:three_prime_UTR
GTTGCCTAGGTTCTATGCCG+AGG 0.628644 4_4:-7797518 Msa0667470:CDS
GATGTAACAATGTGGCATAT+GGG 0.632032 4_4:-7792840 Msa0667470:three_prime_UTR
GCTTCGTATTAATCGCGACA+GGG 0.633339 4_4:+7793592 None:intergenic
CCACTGCAAGTCAATTCCAA+AGG 0.642771 4_4:+7793462 None:intergenic
GACTTAGTGATTTGTCCGGA+AGG 0.655073 4_4:-7793684 Msa0667470:CDS
ACGTCCTCGGCATAGAACCT+AGG 0.656526 4_4:+7797514 None:intergenic
AATTGGTGGGAAAAGTGGAA+AGG 0.657733 4_4:+7797810 None:intergenic
TTGAATGTACCAATTTAACA+AGG 0.660163 4_4:-7793377 Msa0667470:CDS
AGGAAGGATATATGGTACCA+AGG 0.669013 4_4:-7794160 Msa0667470:CDS
TAATCTTTGTCACATTCGCG+GGG 0.673980 4_4:-7797579 Msa0667470:CDS
CGGGAAACGATACATTGTCA+CGG 0.691995 4_4:-7797458 Msa0667470:CDS
AGATAGATCAAACCAAACCG+TGG 0.705896 4_4:-7797770 Msa0667470:CDS
GGGGCTAAGGATAAAAGACG+TGG 0.717767 4_4:-7797560 Msa0667470:CDS
AAGGGAAAGAGATAGAGATG+CGG 0.731861 4_4:-7793736 Msa0667470:CDS
CTGATTGAGATGTAACAATG+TGG 0.770996 4_4:-7792848 Msa0667470:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATGTTTTATTAATTAA+TGG - chr4_4:7793775-7793794 Msa0667470:CDS 10.0%
!! ATAACAAAAATATATATGAA+TGG + chr4_4:7794034-7794053 None:intergenic 10.0%
!! TGATGATTATTAAATTATAT+CGG - chr4_4:7794995-7795014 Msa0667470:intron 10.0%
!! AAAAATAAAAATACATAGTT+AGG + chr4_4:7796088-7796107 None:intergenic 10.0%
!! AACTAACACATTATATAATT+TGG + chr4_4:7793650-7793669 None:intergenic 15.0%
!!! TTATATAATGTGTTAGTTTA+TGG - chr4_4:7793652-7793671 Msa0667470:CDS 15.0%
!! TAATAGACTATAATTTAGAA+TGG - chr4_4:7793853-7793872 Msa0667470:CDS 15.0%
!! CAAAAACATGATAAATAAAT+AGG + chr4_4:7794008-7794027 None:intergenic 15.0%
!!! TTTTTTTTTCAATCTAACTT+AGG - chr4_4:7794544-7794563 Msa0667470:intron 15.0%
!!! ATTTTCATACATTTTTTATG+TGG + chr4_4:7795768-7795787 None:intergenic 15.0%
!!! TTTGATTTTTTTTTCTCTAA+TGG - chr4_4:7796326-7796345 Msa0667470:intron 15.0%
!!! TTTTCATCTATAATTTCATT+TGG + chr4_4:7797547-7797566 None:intergenic 15.0%
!! TGACAACTAAAAAATTATAC+TGG + chr4_4:7794334-7794353 None:intergenic 20.0%
!!! TTTTTAGTTGTCACAAATTA+AGG - chr4_4:7794341-7794360 Msa0667470:intron 20.0%
!!! TTTTAGTTGTCACAAATTAA+GGG - chr4_4:7794342-7794361 Msa0667470:intron 20.0%
!!! AAGTTTTAGGTGAAAAAAAT+AGG + chr4_4:7794605-7794624 None:intergenic 20.0%
!!! TTTTTGTAGATGTGATATTA+GGG - chr4_4:7794667-7794686 Msa0667470:intron 20.0%
!! GTAAATTGAGAAATCAAAAT+AGG + chr4_4:7794723-7794742 None:intergenic 20.0%
!!! TCTTTTTCAAATTTCTGTTT+TGG - chr4_4:7794903-7794922 Msa0667470:intron 20.0%
!!! AACTTTAGAGAACAAAAAAA+TGG + chr4_4:7795220-7795239 None:intergenic 20.0%
!!! TATAAAGCATCAATAAAGTT+AGG + chr4_4:7795248-7795267 None:intergenic 20.0%
!! TTTCTTCTTCTGTATATTAT+TGG + chr4_4:7795411-7795430 None:intergenic 20.0%
!! CAATTATAAAATCAGTTCTA+GGG - chr4_4:7795454-7795473 Msa0667470:intron 20.0%
!! AATAAAATTTAGGAAGTCTA+GGG + chr4_4:7795833-7795852 None:intergenic 20.0%
!! AAATAAAATTTAGGAAGTCT+AGG + chr4_4:7795834-7795853 None:intergenic 20.0%
!! AACAAGGACAAATAAAATTT+AGG + chr4_4:7795843-7795862 None:intergenic 20.0%
!! AGAAAAGAAAAAAAAGAACA+AGG + chr4_4:7795859-7795878 None:intergenic 20.0%
!! TTATGATAACTTTATGAGTT+TGG + chr4_4:7796056-7796075 None:intergenic 20.0%
!! TTAATTAAATGCTTATAGCA+TGG + chr4_4:7796549-7796568 None:intergenic 20.0%
!! AGAAATAATTAGACTATGTT+TGG + chr4_4:7796581-7796600 None:intergenic 20.0%
!! TGGTACAATTATAAATTACT+TGG - chr4_4:7796812-7796831 Msa0667470:intron 20.0%
!!! TTTTATAGGCGAAATTATTT+CGG + chr4_4:7796999-7797018 None:intergenic 20.0%
!! AAGTTGCAAATTATATTCAA+AGG - chr4_4:7797347-7797366 Msa0667470:CDS 20.0%
!! AGTTGCAAATTATATTCAAA+GGG - chr4_4:7797348-7797367 Msa0667470:CDS 20.0%
!! TCTACAAAGAAAGATTAAAA+TGG - chr4_4:7797460-7797479 Msa0667470:CDS 20.0%
!! AAAGAAAGATTAAAATGGAA+GGG - chr4_4:7797465-7797484 Msa0667470:CDS 20.0%
!!! AACTTTGAAATTAAACATCA+TGG + chr4_4:7797690-7797709 None:intergenic 20.0%
!! AATGAAATGTATTACAGTTA+TGG - chr4_4:7797887-7797906 Msa0667470:five_prime_UTR 20.0%
!!! AAGGGAGAAAATTTTTTAGA+AGG + chr4_4:7792928-7792947 None:intergenic 25.0%
!!! CCATTTGTTAAGACATTTTT+GGG - chr4_4:7793357-7793376 Msa0667470:CDS 25.0%
!! AATTGATGGTTACAAAAACA+GGG - chr4_4:7793403-7793422 Msa0667470:CDS 25.0%
!! ATTTGTGAATGTCGATTAAA+AGG + chr4_4:7793706-7793725 None:intergenic 25.0%
!! AGACTATAATTTAGAATGGA+TGG - chr4_4:7793857-7793876 Msa0667470:CDS 25.0%
! ATTAAATTGACTACAGAAAC+TGG + chr4_4:7793955-7793974 None:intergenic 25.0%
! CAGATAGATATGGATATATT+AGG + chr4_4:7793985-7794004 None:intergenic 25.0%
! AATAAATAGGCAGATAGATA+TGG + chr4_4:7793995-7794014 None:intergenic 25.0%
!! AATTATACTGGAGGATATTT+TGG + chr4_4:7794322-7794341 None:intergenic 25.0%
! CAACTAAAAAATTATACTGG+AGG + chr4_4:7794331-7794350 None:intergenic 25.0%
! TTTAGTTGTCACAAATTAAG+GGG - chr4_4:7794343-7794362 Msa0667470:intron 25.0%
!! AGTCATATTTCACAAGTTTT+AGG + chr4_4:7794618-7794637 None:intergenic 25.0%
!! GTTTTTGTAGATGTGATATT+AGG - chr4_4:7794666-7794685 Msa0667470:intron 25.0%
! ATGTGATATTAGGGATTAAA+AGG - chr4_4:7794676-7794695 Msa0667470:intron 25.0%
! TGTGATATTAGGGATTAAAA+GGG - chr4_4:7794677-7794696 Msa0667470:intron 25.0%
! ATTGAGAAATCAAAATAGGA+AGG + chr4_4:7794719-7794738 None:intergenic 25.0%
!!! TTTCAAATTTCTGTTTTGGA+TGG - chr4_4:7794907-7794926 Msa0667470:intron 25.0%
!!! TTCAAATTTCTGTTTTGGAT+GGG - chr4_4:7794908-7794927 Msa0667470:intron 25.0%
! AGACATAAATTTAAGGAAAG+AGG + chr4_4:7795085-7795104 None:intergenic 25.0%
! CGAAAACAGACATAAATTTA+AGG + chr4_4:7795092-7795111 None:intergenic 25.0%
!! GTTTTCGTGTATAATTTTTC+CGG - chr4_4:7795105-7795124 Msa0667470:intron 25.0%
! TAAAGATAGAAAAAGACAGA+TGG + chr4_4:7795162-7795181 None:intergenic 25.0%
! AGAAGAAAAAAATCCCTAAT+TGG - chr4_4:7795423-7795442 Msa0667470:intron 25.0%
! AATTGGAAGATATCCAATTA+GGG + chr4_4:7795439-7795458 None:intergenic 25.0%
! TAATTGGAAGATATCCAATT+AGG + chr4_4:7795440-7795459 None:intergenic 25.0%
!!! CCTAGAACTGATTTTATAAT+TGG + chr4_4:7795456-7795475 None:intergenic 25.0%
! CCAATTATAAAATCAGTTCT+AGG - chr4_4:7795453-7795472 Msa0667470:intron 25.0%
!!! ATTGACTAGTATTTTAGCTT+GGG + chr4_4:7795485-7795504 None:intergenic 25.0%
!!! AATTGACTAGTATTTTAGCT+TGG + chr4_4:7795486-7795505 None:intergenic 25.0%
! GGATATAGAGATGTTAAAAT+GGG + chr4_4:7795535-7795554 None:intergenic 25.0%
! TGGATATAGAGATGTTAAAA+TGG + chr4_4:7795536-7795555 None:intergenic 25.0%
!!! TGTTTTTTTTTGAAGAGGAT+TGG + chr4_4:7795556-7795575 None:intergenic 25.0%
!!! AGAGATGTTTTTTTTTGAAG+AGG + chr4_4:7795561-7795580 None:intergenic 25.0%
!!! AAAGAGTACTACTACATAAT+AGG + chr4_4:7795726-7795745 None:intergenic 25.0%
! ATAAAATTTAGGAAGTCTAG+GGG + chr4_4:7795832-7795851 None:intergenic 25.0%
!! CATTTTATCATACTGTCATA+TGG + chr4_4:7796002-7796021 None:intergenic 25.0%
! AAATTATCAGTTCATAGACT+AGG + chr4_4:7796130-7796149 None:intergenic 25.0%
!!! AAGTCTTTTAGTTGAACTTA+TGG - chr4_4:7796364-7796383 Msa0667470:intron 25.0%
!! CTTATTTCCATAAGCTTTTT+AGG - chr4_4:7796422-7796441 Msa0667470:intron 25.0%
! AAGTTATCCTAAAAAGCTTA+TGG + chr4_4:7796432-7796451 None:intergenic 25.0%
!! CTAATTATTTCTCACATTAC+AGG - chr4_4:7796589-7796608 Msa0667470:intron 25.0%
! TACCCTCATGAAAAATAATT+GGG + chr4_4:7796673-7796692 None:intergenic 25.0%
!! ATTGAAAGTATGATTCCAAT+TGG + chr4_4:7796749-7796768 None:intergenic 25.0%
!!! AAGCAATTTTTTCAGGTAAA+GGG + chr4_4:7796793-7796812 None:intergenic 25.0%
! GGAATAAGAGTAATTAGAAA+AGG - chr4_4:7796833-7796852 Msa0667470:intron 25.0%
! ATAAAGAAATTGCTTGAAGA+AGG - chr4_4:7797061-7797080 Msa0667470:intron 25.0%
!!! AAGTTTGTTTTATGGAACAT+CGG - chr4_4:7797201-7797220 Msa0667470:intron 25.0%
! AATTATATTCAAAGGGTTCT+TGG - chr4_4:7797355-7797374 Msa0667470:CDS 25.0%
! TTGAATGTACCAATTTAACA+AGG - chr4_4:7797392-7797411 Msa0667470:CDS 25.0%
! CAAAGAAAGATTAAAATGGA+AGG - chr4_4:7797464-7797483 Msa0667470:CDS 25.0%
! TCAGACGAAAATAATAAAAC+TGG + chr4_4:7797626-7797645 None:intergenic 25.0%
!! TAGTTGATTTATGTTGTTGA+GGG - chr4_4:7797801-7797820 Msa0667470:CDS 25.0%
! CAAACTTATCTGCAAATTAA+TGG + chr4_4:7797998-7798017 None:intergenic 25.0%
!!! CATTAATTTGCAGATAAGTT+TGG - chr4_4:7797996-7798015 Msa0667470:five_prime_UTR 25.0%
!! GTTTTTAAAGGACGAAAGAT+GGG + chr4_4:7792785-7792804 None:intergenic 30.0%
CTAGCTATAGAGATTATAGT+TGG + chr4_4:7792849-7792868 None:intergenic 30.0%
! TTTGCTAAGATGTTTTGTGA+GGG + chr4_4:7792891-7792910 None:intergenic 30.0%
! AAAATTTTCTCCCTTTGTCA+TGG - chr4_4:7792933-7792952 Msa0667470:three_prime_UTR 30.0%
! AAATTTTCTCCCTTTGTCAT+GGG - chr4_4:7792934-7792953 Msa0667470:three_prime_UTR 30.0%
TTTGTGCTACATTTGGAAAT+TGG + chr4_4:7792979-7792998 None:intergenic 30.0%
! TCTATCTTTTGTGCTACATT+TGG + chr4_4:7792986-7793005 None:intergenic 30.0%
!!! GATTAATGTTTTGATTGCCA+AGG + chr4_4:7793175-7793194 None:intergenic 30.0%
ATTAATCTTTGTCACATTCG+CGG - chr4_4:7793188-7793207 Msa0667470:three_prime_UTR 30.0%
!! GCCATTTGTTAAGACATTTT+TGG - chr4_4:7793356-7793375 Msa0667470:CDS 30.0%
CCCAAAAATGTCTTAACAAA+TGG + chr4_4:7793360-7793379 None:intergenic 30.0%
! GAATTGATGGTTACAAAAAC+AGG - chr4_4:7793402-7793421 Msa0667470:CDS 30.0%
AGGCAGTTATGAAAGAATTT+GGG - chr4_4:7793481-7793500 Msa0667470:CDS 30.0%
AGTAACAATTTGCCTGATTT+GGG - chr4_4:7793504-7793523 Msa0667470:CDS 30.0%
ACAATAACTAAGCTCTCTTT+GGG - chr4_4:7794160-7794179 Msa0667470:CDS 30.0%
TTAGTTGTCACAAATTAAGG+GGG - chr4_4:7794344-7794363 Msa0667470:intron 30.0%
!! ATTAAGGGGGTTTTATATCT+TGG - chr4_4:7794357-7794376 Msa0667470:intron 30.0%
TCTGTTTGAGAGTTTAAAAG+GGG + chr4_4:7794467-7794486 None:intergenic 30.0%
GTCTGTTTGAGAGTTTAAAA+GGG + chr4_4:7794468-7794487 None:intergenic 30.0%
!!! TGACTTTTCTGAAACAATTC+AGG - chr4_4:7794633-7794652 Msa0667470:intron 30.0%
ACCCAACATCAAAAAATTAG+GGG + chr4_4:7795021-7795040 None:intergenic 30.0%
CACCCAACATCAAAAAATTA+GGG + chr4_4:7795022-7795041 None:intergenic 30.0%
TCACCCAACATCAAAAAATT+AGG + chr4_4:7795023-7795042 None:intergenic 30.0%
CATAAATTTAAGGAAAGAGG+AGG + chr4_4:7795082-7795101 None:intergenic 30.0%
CAATAAACACGATACTGATA+TGG - chr4_4:7795300-7795319 Msa0667470:intron 30.0%
!! ATTGAGTTGAGTTGGATTAT+AGG - chr4_4:7795503-7795522 Msa0667470:intron 30.0%
!! TTGAGTTGAGTTGGATTATA+GGG - chr4_4:7795504-7795523 Msa0667470:intron 30.0%
AGTACTACTACATAATAGGT+TGG + chr4_4:7795722-7795741 None:intergenic 30.0%
TTTCTAGATATCACAGATTC+AGG - chr4_4:7795874-7795893 Msa0667470:intron 30.0%
TTCTAGATATCACAGATTCA+GGG - chr4_4:7795875-7795894 Msa0667470:intron 30.0%
ATGAACTGATAATTTCCACA+TGG - chr4_4:7796135-7796154 Msa0667470:intron 30.0%
! GAAAACCTTAACTGTTTTGT+GGG + chr4_4:7796187-7796206 None:intergenic 30.0%
! AGAAAACCTTAACTGTTTTG+TGG + chr4_4:7796188-7796207 None:intergenic 30.0%
! CAAAACAGTTAAGGTTTTCT+AGG - chr4_4:7796188-7796207 Msa0667470:intron 30.0%
! TTATTTCTCACATTACAGGA+AGG - chr4_4:7796593-7796612 Msa0667470:intron 30.0%
!! AAGCCCAATTATTTTTCATG+AGG - chr4_4:7796667-7796686 Msa0667470:intron 30.0%
!! AGCCCAATTATTTTTCATGA+GGG - chr4_4:7796668-7796687 Msa0667470:intron 30.0%
CTACCCTCATGAAAAATAAT+TGG + chr4_4:7796674-7796693 None:intergenic 30.0%
!!! CAAGCAATTTTTTCAGGTAA+AGG + chr4_4:7796794-7796813 None:intergenic 30.0%
CTTTACCTGAAAAAATTGCT+TGG - chr4_4:7796792-7796811 Msa0667470:intron 30.0%
!!! TTGTACCAAGCAATTTTTTC+AGG + chr4_4:7796800-7796819 None:intergenic 30.0%
!!! ACGAAGCAAAGTTTGTTTTA+TGG - chr4_4:7797193-7797212 Msa0667470:intron 30.0%
GGATTCATGAACACAAAATA+AGG + chr4_4:7797250-7797269 None:intergenic 30.0%
AAGAAAGTGATCTCATAAGT+TGG + chr4_4:7797277-7797296 None:intergenic 30.0%
ATGTACCAATTTAACAAGGA+AGG - chr4_4:7797396-7797415 Msa0667470:CDS 30.0%
CTTATCCTTCCTTGTTAAAT+TGG + chr4_4:7797404-7797423 None:intergenic 30.0%
! GTAGTTGATTTATGTTGTTG+AGG - chr4_4:7797800-7797819 Msa0667470:CDS 30.0%
!! GGTTTTTAAAGGACGAAAGA+TGG + chr4_4:7792786-7792805 None:intergenic 35.0%
TTGTGAGGGAAATATGGAAT+TGG + chr4_4:7792877-7792896 None:intergenic 35.0%
! GATGTTTTGTGAGGGAAATA+TGG + chr4_4:7792883-7792902 None:intergenic 35.0%
!! GTTTGCTAAGATGTTTTGTG+AGG + chr4_4:7792892-7792911 None:intergenic 35.0%
TGCTACATTTGGAAATTGGT+GGG + chr4_4:7792975-7792994 None:intergenic 35.0%
GAAATATACGAAAGGGACTA+AGG + chr4_4:7793130-7793149 None:intergenic 35.0%
GGTACGTGAAATATACGAAA+GGG + chr4_4:7793137-7793156 None:intergenic 35.0%
AGGTACGTGAAATATACGAA+AGG + chr4_4:7793138-7793157 None:intergenic 35.0%
TTAATCTTTGTCACATTCGC+GGG - chr4_4:7793189-7793208 Msa0667470:three_prime_UTR 35.0%
!! TGGAAAGTGTTCAATTCGTT+CGG - chr4_4:7793291-7793310 Msa0667470:three_prime_UTR 35.0%
!! GACATTTTTGGGAGTAGATA+AGG - chr4_4:7793368-7793387 Msa0667470:CDS 35.0%
GAGGCAGTTATGAAAGAATT+TGG - chr4_4:7793480-7793499 Msa0667470:CDS 35.0%
GAGTAACAATTTGCCTGATT+TGG - chr4_4:7793503-7793522 Msa0667470:CDS 35.0%
TGACTTCATGTCTATTTGCA+AGG - chr4_4:7793551-7793570 Msa0667470:CDS 35.0%
CACAATAACTAAGCTCTCTT+TGG - chr4_4:7794159-7794178 Msa0667470:CDS 35.0%
!! GAGGATATTTTGGATGGTTT+GGG + chr4_4:7794312-7794331 None:intergenic 35.0%
!! ATACTGGAGGATATTTTGGA+TGG + chr4_4:7794318-7794337 None:intergenic 35.0%
CAAGAAAAGGAAGGATGAAA+TGG + chr4_4:7794434-7794453 None:intergenic 35.0%
GGTCTGTTTGAGAGTTTAAA+AGG + chr4_4:7794469-7794488 None:intergenic 35.0%
GACTCTAGTATGAACACTTA+AGG + chr4_4:7794490-7794509 None:intergenic 35.0%
GCGCACATACACATATATAT+GGG + chr4_4:7794848-7794867 None:intergenic 35.0%
TGCGCACATACACATATATA+TGG + chr4_4:7794849-7794868 None:intergenic 35.0%
!!! GCCCCTAATTTTTTGATGTT+GGG - chr4_4:7795017-7795036 Msa0667470:intron 35.0%
! TTCGTGTATAATTTTTCCGG+TGG - chr4_4:7795108-7795127 Msa0667470:intron 35.0%
CTATCTTTACTAGCTCGTAT+TGG - chr4_4:7795173-7795192 Msa0667470:intron 35.0%
AATGGACCATGGTTTGAATT+GGG + chr4_4:7795202-7795221 None:intergenic 35.0%
AAATGGACCATGGTTTGAAT+TGG + chr4_4:7795203-7795222 None:intergenic 35.0%
GAGAACAAAAAAATGGACCA+TGG + chr4_4:7795213-7795232 None:intergenic 35.0%
!! TGTATGTGTCACTTCTTCAT+AGG + chr4_4:7795276-7795295 None:intergenic 35.0%
ATGAAGAAGTGACACATACA+CGG - chr4_4:7795276-7795295 Msa0667470:intron 35.0%
!! TTCAATCAAAAGTATCGTGC+CGG - chr4_4:7795371-7795390 Msa0667470:intron 35.0%
! ATTGGTTTACTCTGTTGTAC+CGG + chr4_4:7795393-7795412 None:intergenic 35.0%
!! ACTAGTCAATTGAGTTGAGT+TGG - chr4_4:7795495-7795514 Msa0667470:intron 35.0%
GGTTGGACATGAGAAATTTA+TGG + chr4_4:7795705-7795724 None:intergenic 35.0%
TTTATGTGGTACAAGCTGTA+CGG + chr4_4:7795754-7795773 None:intergenic 35.0%
ACAAGGATTGTGCTTTCTTA+TGG + chr4_4:7795803-7795822 None:intergenic 35.0%
AACTGATAATTTCCACATGG+AGG - chr4_4:7796138-7796157 Msa0667470:intron 35.0%
AAACCACCGATATAACTTCA+TGG - chr4_4:7796161-7796180 Msa0667470:intron 35.0%
CACATTACAGGAAGGATATA+TGG - chr4_4:7796601-7796620 Msa0667470:intron 35.0%
! GAAGCTTGTTTCTTGGTAAT+GGG + chr4_4:7796646-7796665 None:intergenic 35.0%
! AGAAGCTTGTTTCTTGGTAA+TGG + chr4_4:7796647-7796666 None:intergenic 35.0%
! AGGTTAAGAGTGCAAATAGA+GGG + chr4_4:7796715-7796734 None:intergenic 35.0%
! AAGGTTAAGAGTGCAAATAG+AGG + chr4_4:7796716-7796735 None:intergenic 35.0%
TTGCACTCTTAACCTTCTTA+TGG - chr4_4:7796720-7796739 Msa0667470:intron 35.0%
!!! ACACCACTTTGACCTTTTTT+GGG + chr4_4:7796875-7796894 None:intergenic 35.0%
!!! AACACCACTTTGACCTTTTT+TGG + chr4_4:7796876-7796895 None:intergenic 35.0%
! CTGGATCTAAAACTGTTCTA+TGG + chr4_4:7796913-7796932 None:intergenic 35.0%
!! GTTTTAGATCCAGTTGTTAC+AGG - chr4_4:7796920-7796939 Msa0667470:intron 35.0%
GTAGAGAACCATTTCTATTG+AGG - chr4_4:7797116-7797135 Msa0667470:intron 35.0%
GCACTAAACCTCAATAGAAA+TGG + chr4_4:7797127-7797146 None:intergenic 35.0%
TTTCTTGAATCAGTTGCCTT+TGG - chr4_4:7797291-7797310 Msa0667470:CDS 35.0%
TATATTCAAAGGGTTCTTGG+AGG - chr4_4:7797358-7797377 Msa0667470:CDS 35.0%
ATATTCAAAGGGTTCTTGGA+GGG - chr4_4:7797359-7797378 Msa0667470:CDS 35.0%
GATAAGTATGCTATTCTTGC+TGG - chr4_4:7797418-7797437 Msa0667470:CDS 35.0%
TCGTCGCTAAATATCAAAGA+CGG - chr4_4:7797588-7797607 Msa0667470:CDS 35.0%
ACATCACAAAGATGCACTAT+AGG + chr4_4:7797835-7797854 None:intergenic 35.0%
AGTGCATCTTTGTGATGTAA+AGG - chr4_4:7797837-7797856 Msa0667470:exon 35.0%
CTGATTGAGATGTAACAATG+TGG - chr4_4:7797921-7797940 Msa0667470:five_prime_UTR 35.0%
AGATGTAACAATGTGGCATA+TGG - chr4_4:7797928-7797947 Msa0667470:five_prime_UTR 35.0%
GATGTAACAATGTGGCATAT+GGG - chr4_4:7797929-7797948 Msa0667470:five_prime_UTR 35.0%
ATGGGATTCTTATGCACAAA+TGG - chr4_4:7797947-7797966 Msa0667470:five_prime_UTR 35.0%
TAAAGGACGAAAGATGGGTA+TGG + chr4_4:7792780-7792799 None:intergenic 40.0%
TTATGATGAGAGAGAGAGAG+CGG + chr4_4:7792816-7792835 None:intergenic 40.0%
AATTGGTGGGAAAAGTGGAA+AGG + chr4_4:7792962-7792981 None:intergenic 40.0%
TTGGAAATTGGTGGGAAAAG+TGG + chr4_4:7792967-7792986 None:intergenic 40.0%
GTGCTACATTTGGAAATTGG+TGG + chr4_4:7792976-7792995 None:intergenic 40.0%
AGATAGATCAAACCAAACCG+TGG - chr4_4:7792999-7793018 Msa0667470:three_prime_UTR 40.0%
!!! TGTTTTGATTGCCAAGGTCT+CGG + chr4_4:7793169-7793188 None:intergenic 40.0%
TAATCTTTGTCACATTCGCG+GGG - chr4_4:7793190-7793209 Msa0667470:three_prime_UTR 40.0%
! AAGACGTGGAGATTGTTTCT+CGG - chr4_4:7793223-7793242 Msa0667470:three_prime_UTR 40.0%
TTGAACACTTTCCATGTCTC+TGG + chr4_4:7793285-7793304 None:intergenic 40.0%
!! GGAAAGTGTTCAATTCGTTC+GGG - chr4_4:7793292-7793311 Msa0667470:three_prime_UTR 40.0%
TGATGGTTACAAAAACAGGG+AGG - chr4_4:7793406-7793425 Msa0667470:CDS 40.0%
GATGGTTACAAAAACAGGGA+GGG - chr4_4:7793407-7793426 Msa0667470:CDS 40.0%
! TGTTGGTGAACACAAGAAAG+AGG - chr4_4:7793461-7793480 Msa0667470:CDS 40.0%
!! AATTTGCCTGATTTGGGACT+GGG - chr4_4:7793510-7793529 Msa0667470:CDS 40.0%
CTAGATCCTCTTGTTACACA+TGG - chr4_4:7793731-7793750 Msa0667470:CDS 40.0%
CATGTTCCATGTGTAACAAG+AGG + chr4_4:7793740-7793759 None:intergenic 40.0%
! TTTGGATGGTTTGGGAGATT+CGG + chr4_4:7794304-7794323 None:intergenic 40.0%
!! GGAGGATATTTTGGATGGTT+TGG + chr4_4:7794313-7794332 None:intergenic 40.0%
!! AAGGGGGTTTTATATCTTGG+AGG - chr4_4:7794360-7794379 Msa0667470:intron 40.0%
TAGATGATTTCGAGAGCAGA+GGG + chr4_4:7794405-7794424 None:intergenic 40.0%
ATAGATGATTTCGAGAGCAG+AGG + chr4_4:7794406-7794425 None:intergenic 40.0%
GAGAGCTTTCAAGAAAAGGA+AGG + chr4_4:7794443-7794462 None:intergenic 40.0%
!!! GGCCCCTAATTTTTTGATGT+TGG - chr4_4:7795016-7795035 Msa0667470:intron 40.0%
ATGGACCATGGTTTGAATTG+GGG + chr4_4:7795201-7795220 None:intergenic 40.0%
!! ATGTGTCACTTCTTCATAGG+TGG + chr4_4:7795273-7795292 None:intergenic 40.0%
!! GGCACGATACTTTTGATTGA+AGG + chr4_4:7795372-7795391 None:intergenic 40.0%
CCACTATGTTGAGATGTGAT+TGG + chr4_4:7795588-7795607 None:intergenic 40.0%
CCAATCACATCTCAACATAG+TGG - chr4_4:7795585-7795604 Msa0667470:intron 40.0%
AAGTCTAGGGGAATATCACA+AGG + chr4_4:7795820-7795839 None:intergenic 40.0%
! CAGGGACTTTTTGTTGAGTA+AGG - chr4_4:7795893-7795912 Msa0667470:intron 40.0%
TGTGGGCCATGAAGTTATAT+CGG + chr4_4:7796170-7796189 None:intergenic 40.0%
AGGAAGGATATATGGTACCA+AGG - chr4_4:7796609-7796628 Msa0667470:intron 40.0%
!! TCTTGGTAATGGGTCACATT+TGG + chr4_4:7796636-7796655 None:intergenic 40.0%
!!! CAAATAGAGGGGTTGGTTTT+TGG + chr4_4:7796703-7796722 None:intergenic 40.0%
! GGTTAAGAGTGCAAATAGAG+GGG + chr4_4:7796714-7796733 None:intergenic 40.0%
ACCTTCTTATGGATGCCAAT+TGG - chr4_4:7796731-7796750 Msa0667470:intron 40.0%
TCCAATTGGCATCCATAAGA+AGG + chr4_4:7796735-7796754 None:intergenic 40.0%
AATGCAACTCCTGTAACAAC+TGG + chr4_4:7796932-7796951 None:intergenic 40.0%
GTTGTTACAGGAGTTGCATT+AGG - chr4_4:7796932-7796951 Msa0667470:intron 40.0%
AAGGGAAAGAGATAGAGATG+CGG - chr4_4:7797033-7797052 Msa0667470:intron 40.0%
! AGGTGACTTAGTGATTTGTC+CGG - chr4_4:7797081-7797100 Msa0667470:intron 40.0%
! TGCTCTTTTTGCCGAGTTAA+CGG - chr4_4:7797144-7797163 Msa0667470:intron 40.0%
!! TTTTTGCCGAGTTAACGGAT+AGG - chr4_4:7797149-7797168 Msa0667470:intron 40.0%
GACAATCCTATCCGTTAACT+CGG + chr4_4:7797158-7797177 None:intergenic 40.0%
! GTGATCTCATAAGTTGGCAT+AGG + chr4_4:7797271-7797290 None:intergenic 40.0%
TATGATGAGAGAGAGAGAGC+GGG + chr4_4:7792815-7792834 None:intergenic 45.0%
CGGGAAACGATACATTGTCA+CGG - chr4_4:7793311-7793330 Msa0667470:exon 45.0%
AATGGCTCAACCATCAACCT+TGG + chr4_4:7793342-7793361 None:intergenic 45.0%
! TTGGGAGTAGATAAGGTGCT+AGG - chr4_4:7793375-7793394 Msa0667470:CDS 45.0%
! TGGGAGTAGATAAGGTGCTA+GGG - chr4_4:7793376-7793395 Msa0667470:CDS 45.0%
!! AGTGGGTTTGTTAAGGAACC+AGG - chr4_4:7793432-7793451 Msa0667470:CDS 45.0%
AAGGAACCAGGAGTTCTTGT+TGG - chr4_4:7793444-7793463 Msa0667470:CDS 45.0%
TGTTCACCAACAAGAACTCC+TGG + chr4_4:7793453-7793472 None:intergenic 45.0%
!! CAATTTGCCTGATTTGGGAC+TGG - chr4_4:7793509-7793528 Msa0667470:CDS 45.0%
GAAAGGAAGGGGAGAACTTT+GGG - chr4_4:7794194-7794213 Msa0667470:intron 45.0%
AAAGGAAGGGGAGAACTTTG+GGG - chr4_4:7794195-7794214 Msa0667470:intron 45.0%
! TTCGAGAGCAGAGGGTTTTT+GGG + chr4_4:7794397-7794416 None:intergenic 45.0%
! TTTCGAGAGCAGAGGGTTTT+TGG + chr4_4:7794398-7794417 None:intergenic 45.0%
GGGAGAGAGCTTTCAAGAAA+AGG + chr4_4:7794447-7794466 None:intergenic 45.0%
TGGACCATGGTTTGAATTGG+GGG + chr4_4:7795200-7795219 None:intergenic 45.0%
CATGGCCCACAAAACAGTTA+AGG - chr4_4:7796179-7796198 Msa0667470:intron 45.0%
AATGGGTCACATTTGGTCCT+TGG + chr4_4:7796629-7796648 None:intergenic 45.0%
! GGGCTTAGAAGCTTGTTTCT+TGG + chr4_4:7796653-7796672 None:intergenic 45.0%
! AAGAGTGCAAATAGAGGGGT+TGG + chr4_4:7796710-7796729 None:intergenic 45.0%
!!! CTTTGACCTTTTTTGGGTGG+TGG + chr4_4:7796869-7796888 None:intergenic 45.0%
!!! CCACTTTGACCTTTTTTGGG+TGG + chr4_4:7796872-7796891 None:intergenic 45.0%
CCACCCAAAAAAGGTCAAAG+TGG - chr4_4:7796869-7796888 Msa0667470:intron 45.0%
!! GAAAGCGCAACGGCTTTTAT+AGG + chr4_4:7797013-7797032 None:intergenic 45.0%
TAAAAGCCGTTGCGCTTTCA+AGG - chr4_4:7797014-7797033 Msa0667470:intron 45.0%
AAAAGCCGTTGCGCTTTCAA+GGG - chr4_4:7797015-7797034 Msa0667470:intron 45.0%
! TCTTTCCCTTGAAAGCGCAA+CGG + chr4_4:7797023-7797042 None:intergenic 45.0%
! GACTTAGTGATTTGTCCGGA+AGG - chr4_4:7797085-7797104 Msa0667470:intron 45.0%
TCTCTACAAGTCGTTCCTTC+CGG + chr4_4:7797103-7797122 None:intergenic 45.0%
GCTTCGTATTAATCGCGACA+GGG + chr4_4:7797180-7797199 None:intergenic 45.0%
TGCTTCGTATTAATCGCGAC+AGG + chr4_4:7797181-7797200 None:intergenic 45.0%
!!! TTTTATGGAACATCGGCTCG+CGG - chr4_4:7797208-7797227 Msa0667470:intron 45.0%
CCACTGCAAGTCAATTCCAA+AGG + chr4_4:7797310-7797329 None:intergenic 45.0%
!! CCTTTGGAATTGACTTGCAG+TGG - chr4_4:7797307-7797326 Msa0667470:CDS 45.0%
!! TTGGAATTGACTTGCAGTGG+AGG - chr4_4:7797310-7797329 Msa0667470:CDS 45.0%
!! TGGAATTGACTTGCAGTGGA+GGG - chr4_4:7797311-7797330 Msa0667470:CDS 45.0%
GCTATTCTTGCTGGAACAGA+TGG - chr4_4:7797427-7797446 Msa0667470:CDS 45.0%
!!! TTTTCAAAAAAAAAATATAT+TGG - chr4_4:7793929-7793948 Msa0667470:CDS 5.0%
!! ATAAAATTTAATTACATTTA+TGG - chr4_4:7795953-7795972 Msa0667470:intron 5.0%
! GCGGGTGAAGGGGTTTTTAA+AGG + chr4_4:7792797-7792816 None:intergenic 50.0%
GGAAAGGCTCCCATGACAAA+GGG + chr4_4:7792946-7792965 None:intergenic 50.0%
TGGAAAGGCTCCCATGACAA+AGG + chr4_4:7792947-7792966 None:intergenic 50.0%
AGTGCGACGAGCATGTAGTA+TGG + chr4_4:7793069-7793088 None:intergenic 50.0%
CCAAGGTCTCGGAGACAAAT+AGG + chr4_4:7793158-7793177 None:intergenic 50.0%
CCTATTTGTCTCCGAGACCT+TGG - chr4_4:7793155-7793174 Msa0667470:three_prime_UTR 50.0%
GGGGCTAAGGATAAAAGACG+TGG - chr4_4:7793209-7793228 Msa0667470:three_prime_UTR 50.0%
TTTCTCGGTCAGTGTTGCCT+AGG - chr4_4:7793238-7793257 Msa0667470:three_prime_UTR 50.0%
! ACATTGTCACGGCTAGTCCA+AGG - chr4_4:7793322-7793341 Msa0667470:CDS 50.0%
GGTGCTAGGGACTGAATTGA+TGG - chr4_4:7793389-7793408 Msa0667470:CDS 50.0%
ACAAAAACAGGGAGGGCAAG+TGG - chr4_4:7793414-7793433 Msa0667470:CDS 50.0%
CAAAAACAGGGAGGGCAAGT+GGG - chr4_4:7793415-7793434 Msa0667470:CDS 50.0%
!! GAGGGCAAGTGGGTTTGTTA+AGG - chr4_4:7793425-7793444 Msa0667470:CDS 50.0%
GGAAAGGAAGGGGAGAACTT+TGG - chr4_4:7794193-7794212 Msa0667470:intron 50.0%
! TCGAGAGCAGAGGGTTTTTG+GGG + chr4_4:7794396-7794415 None:intergenic 50.0%
!!! GAGCAGTTTTGTTAGGCCAC+CGG + chr4_4:7795127-7795146 None:intergenic 50.0%
!!! ACCAGGGGAGCAGTTTTGTT+AGG + chr4_4:7795134-7795153 None:intergenic 50.0%
AAGACAGATGGAGCAGACCA+GGG + chr4_4:7795150-7795169 None:intergenic 50.0%
AAAGACAGATGGAGCAGACC+AGG + chr4_4:7795151-7795170 None:intergenic 50.0%
TGGTCCCCCAATTCAAACCA+TGG - chr4_4:7795193-7795212 Msa0667470:intron 50.0%
TATCGGTGGTTTCCTCCATG+TGG + chr4_4:7796153-7796172 None:intergenic 50.0%
GGGCCATGAAGTTATATCGG+TGG + chr4_4:7796167-7796186 None:intergenic 50.0%
!!! TGACCTTTTTTGGGTGGTGG+TGG + chr4_4:7796866-7796885 None:intergenic 50.0%
AGAGAGAGAGAGCGGGTGAA+GGG + chr4_4:7792808-7792827 None:intergenic 55.0%
!! GAGAAGGGTGCCATCTAGGT+CGG + chr4_4:7793028-7793047 None:intergenic 55.0%
!! ACACGAGAAGGGTGCCATCT+AGG + chr4_4:7793032-7793051 None:intergenic 55.0%
TGCACTTCGCGACACGAGAA+GGG + chr4_4:7793043-7793062 None:intergenic 55.0%
ATGCACTTCGCGACACGAGA+AGG + chr4_4:7793044-7793063 None:intergenic 55.0%
TTGTCACATTCGCGGGGCTA+AGG - chr4_4:7793196-7793215 Msa0667470:three_prime_UTR 55.0%
GTTGCCTAGGTTCTATGCCG+AGG - chr4_4:7793251-7793270 Msa0667470:three_prime_UTR 55.0%
ACGTCCTCGGCATAGAACCT+AGG + chr4_4:7793258-7793277 None:intergenic 55.0%
TGTCTCTGGATGCACGTCCT+CGG + chr4_4:7793271-7793290 None:intergenic 55.0%
AGGACGTGCATCCAGAGACA+TGG - chr4_4:7793271-7793290 Msa0667470:three_prime_UTR 55.0%
! CACGGCTAGTCCAAGGTTGA+TGG - chr4_4:7793329-7793348 Msa0667470:CDS 55.0%
CTGTCTCCCAGTCCCAAATC+AGG + chr4_4:7793519-7793538 None:intergenic 55.0%
! AGCTCTCTTTGGGAGTCTCG+AGG - chr4_4:7794170-7794189 Msa0667470:intron 55.0%
! GCTCTCTTTGGGAGTCTCGA+GGG - chr4_4:7794171-7794190 Msa0667470:intron 55.0%
! CTCTCTTTGGGAGTCTCGAG+GGG - chr4_4:7794172-7794191 Msa0667470:intron 55.0%
TTTGGGAGTCTCGAGGGGAA+AGG - chr4_4:7794177-7794196 Msa0667470:intron 55.0%
GAGTCTCGAGGGGAAAGGAA+GGG - chr4_4:7794182-7794201 Msa0667470:intron 55.0%
AGTCTCGAGGGGAAAGGAAG+GGG - chr4_4:7794183-7794202 Msa0667470:intron 55.0%
!! GAGAGCAGAGGGTTTTTGGG+GGG + chr4_4:7794394-7794413 None:intergenic 55.0%
!! CGAGAGCAGAGGGTTTTTGG+GGG + chr4_4:7794395-7794414 None:intergenic 55.0%
GCCTAACAAAACTGCTCCCC+TGG - chr4_4:7795130-7795149 Msa0667470:intron 55.0%
AGACAGATGGAGCAGACCAG+GGG + chr4_4:7795149-7795168 None:intergenic 55.0%
GTGGTACAAGCTGTACGGCT+TGG + chr4_4:7795749-7795768 None:intergenic 55.0%
!!! CCTTTTTTGGGTGGTGGTGG+AGG + chr4_4:7796863-7796882 None:intergenic 55.0%
CCTCCACCACCACCCAAAAA+AGG - chr4_4:7796860-7796879 Msa0667470:intron 55.0%
GGCTCGCGGACACAAATTGT+TGG - chr4_4:7797222-7797241 Msa0667470:CDS 55.0%
AGGGTTCTTGGAGGGACTCT+TGG - chr4_4:7797367-7797386 Msa0667470:CDS 55.0%
GAGAGAGAGAGCGGGTGAAG+GGG + chr4_4:7792807-7792826 None:intergenic 60.0%
GAGAGAGAGAGAGCGGGTGA+AGG + chr4_4:7792809-7792828 None:intergenic 60.0%
CTAGGTCGGATGCCACGGTT+TGG + chr4_4:7793014-7793033 None:intergenic 60.0%
ACCGTGGCATCCGACCTAGA+TGG - chr4_4:7793015-7793034 Msa0667470:three_prime_UTR 60.0%
GCCATCTAGGTCGGATGCCA+CGG + chr4_4:7793019-7793038 None:intergenic 60.0%
ATGCTCGTCGCACTCGAAGC+TGG - chr4_4:7793075-7793094 Msa0667470:three_prime_UTR 60.0%
GGAGTCTCGAGGGGAAAGGA+AGG - chr4_4:7794181-7794200 Msa0667470:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 7792772 7798019 7792772 ID=Msa0667470;Name=Msa0667470
chr4_4 mRNA 7792772 7798019 7792772 ID=Msa0667470-mRNA-1;Parent=Msa0667470;Name=Msa0667470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=180|1|1|1|1|1|2|542|495
chr4_4 exon 7792772 7794180 7792772 ID=Msa0667470-mRNA-1:exon:2582;Parent=Msa0667470-mRNA-1
chr4_4 exon 7797219 7798019 7797219 ID=Msa0667470-mRNA-1:exon:2581;Parent=Msa0667470-mRNA-1
chr4_4 five_prime_UTR 7797840 7798019 7797840 ID=Msa0667470-mRNA-1:five_prime_utr;Parent=Msa0667470-mRNA-1
chr4_4 CDS 7797219 7797839 7797219 ID=Msa0667470-mRNA-1:cds;Parent=Msa0667470-mRNA-1
chr4_4 CDS 7793314 7794180 7793314 ID=Msa0667470-mRNA-1:cds;Parent=Msa0667470-mRNA-1
chr4_4 three_prime_UTR 7792772 7793313 7792772 ID=Msa0667470-mRNA-1:three_prime_utr;Parent=Msa0667470-mRNA-1
Gene Sequence

>Msa0667470

ATGGGAGCCTTTCCACTTTTCCCACCAATTTCCAAATGTAGCACAAAAGATAGATCAAACCAAACCGTGGCATCCGACCTAGATGGCACCCTTCTCGTGTCGCGAAGTGCATTTCCATACTACATGCTCGTCGCACTCGAAGCTGGAAGCATTCTAAGAGCTTTAATTCTCTTATCCTTAGTCCCTTTCGTATATTTCACGTACCTATTTGTCTCCGAGACCTTGGCAATCAAAACATTAATCTTTGTCACATTCGCGGGGCTAAGGATAAAAGACGTGGAGATTGTTTCTCGGTCAGTGTTGCCTAGGTTCTATGCCGAGGACGTGCATCCAGAGACATGGAAAGTGTTCAATTCGTTCGGGAAACGATACATTGTCACGGCTAGTCCAAGGTTGATGGTTGAGCCATTTGTTAAGACATTTTTGGGAGTAGATAAGGTGCTAGGGACTGAATTGATGGTTACAAAAACAGGGAGGGCAAGTGGGTTTGTTAAGGAACCAGGAGTTCTTGTTGGTGAACACAAGAAAGAGGCAGTTATGAAAGAATTTGGGAGTAACAATTTGCCTGATTTGGGACTGGGAGACAGTGTAACTGACTCTGACTTCATGTCTATTTGCAAGGAAGGATATATGGTACCAAGGACCAAATGTGACCCATTACCAAGAAACAAGCTTCTAAGCCCAATTATTTTTCATGAGGGTAGATTAGTCCAAAAACCAACCCCTCTATTTGCACTCTTAACCTTCTTATGGATGCCAATTGGAATCATACTTTCAATCTTAAGGGTGTATCTCAACATCCCTTTACCTGAAAAAATTGCTTGGTACAATTATAAATTACTTGGAATAAGAGTAATTAGAAAAGGTACACCTCCACCACCACCCAAAAAAGGTCAAAGTGGTGTTCTATTTGTTTGCAACCATAGAACAGTTTTAGATCCAGTTGTTACAGGAGTTGCATTAGGAAGAAAAATAAGTTGTGTAACTTATAGTATAAGTAAATTCACCGAAATAATTTCGCCTATAAAAGCCGTTGCGCTTTCAAGGGAAAGAGATAGAGATGCGGCAAATATAAAGAAATTGCTTGAAGAAGGTGACTTAGTGATTTGTCCGGAAGGAACGACTTGTAGAGAACCATTTCTATTGAGGTTTAGTGCTCTTTTTGCCGAGTTAACGGATAGGATTGTCCCTGTCGCGATTAATACGAAGCAAAGTTTGTTTTATGGAACATCGGCTCGCGGACACAAATTGTTGGATCCTTATTTTGTGTTCATGAATCCTATGCCAACTTATGAGATCACTTTCTTGAATCAGTTGCCTTTGGAATTGACTTGCAGTGGAGGGAAATCTTCAATTGAAGTTGCAAATTATATTCAAAGGGTTCTTGGAGGGACTCTTGGATTTGAATGTACCAATTTAACAAGGAAGGATAAGTATGCTATTCTTGCTGGAACAGATGGAATTGTTAGATCTACAAAGAAAGATTAA
Protein sequence

>Msa0667470

MGAFPLFPPISKCSTKDRSNQTVASDLDGTLLVSRSAFPYYMLVALEAGSILRALILLSLVPFVYFTYLFVSETLAIKTLIFVTFAGLRIKDVEIVSRSVLPRFYAEDVHPETWKVFNSFGKRYIVTASPRLMVEPFVKTFLGVDKVLGTELMVTKTGRASGFVKEPGVLVGEHKKEAVMKEFGSNNLPDLGLGDSVTDSDFMSICKEGYMVPRTKCDPLPRNKLLSPIIFHEGRLVQKPTPLFALLTFLWMPIGIILSILRVYLNIPLPEKIAWYNYKLLGIRVIRKGTPPPPPKKGQSGVLFVCNHRTVLDPVVTGVALGRKISCVTYSISKFTEIISPIKAVALSRERDRDAANIKKLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSLFYGTSARGHKLLDPYFVFMNPMPTYEITFLNQLPLELTCSGGKSSIEVANYIQRVLGGTLGFECTNLTRKDKYAILAGTDGIVRSTKKD*