Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677770 | XP_027186999.1 | 65.946 | 185 | 59 | 2 | 1 | 185 | 63 | 243 | 1.37e-81 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677770 | A0A3Q7WZI6 | 65.946 | 185 | 59 | 2 | 1 | 185 | 63 | 243 | 6.53e-82 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031820 | Msa0677770 | 0.803082 | 4.131529e-49 | -8.615850e-47 |
| Msa0055100 | Msa0677770 | 0.806045 | 9.950754e-50 | -8.615850e-47 |
| Msa0099510 | Msa0677770 | 0.801707 | 7.929466e-49 | -8.615850e-47 |
| Msa0101180 | Msa0677770 | 0.815232 | 1.027251e-51 | -8.615850e-47 |
| Msa0616240 | Msa0677770 | 0.801614 | 8.288153e-49 | -8.615850e-47 |
| Msa0651150 | Msa0677770 | 0.801896 | 7.250901e-49 | -8.615850e-47 |
| Msa0654870 | Msa0677770 | 0.807684 | 4.481161e-50 | -8.615850e-47 |
| Msa0669760 | Msa0677770 | 0.806457 | 8.151117e-50 | -8.615850e-47 |
| Msa0677770 | Msa0699570 | 0.807182 | 5.728593e-50 | -8.615850e-47 |
| Msa0677770 | Msa0705600 | 0.808998 | 2.350599e-50 | -8.615850e-47 |
| Msa0677770 | Msa0791820 | 0.804664 | 1.937927e-49 | -8.615850e-47 |
| Msa0677770 | Msa0805500 | 0.821162 | 4.675786e-53 | -8.615850e-47 |
| Msa0677770 | Msa0814250 | 0.815256 | 1.014924e-51 | -8.615850e-47 |
| Msa0677770 | Msa0821680 | 0.810614 | 1.055895e-50 | -8.615850e-47 |
| Msa0677770 | Msa0837650 | 0.817962 | 2.512418e-52 | -8.615850e-47 |
| Msa0677770 | Msa0839200 | 0.804026 | 2.631738e-49 | -8.615850e-47 |
| Msa0677770 | Msa0885880 | 0.886275 | 3.940120e-72 | -8.615850e-47 |
| Msa0677770 | Msa0895310 | 0.819271 | 1.267434e-52 | -8.615850e-47 |
| Msa0677770 | Msa0898890 | 0.820718 | 5.914658e-53 | -8.615850e-47 |
| Msa0677770 | Msa0933290 | 0.805036 | 1.620286e-49 | -8.615850e-47 |
| Msa0677770 | Msa0937330 | 0.812670 | 3.772591e-51 | -8.615850e-47 |
| Msa0677770 | Msa1000930 | 0.803950 | 2.729223e-49 | -8.615850e-47 |
| Msa0677770 | Msa1089840 | 0.809831 | 1.557800e-50 | -8.615850e-47 |
| Msa0677770 | Msa1098720 | -0.804032 | 2.623818e-49 | -8.615850e-47 |
| Msa0677770 | Msa1108820 | 0.812555 | 3.997791e-51 | -8.615850e-47 |
| Msa0677770 | Msa1122820 | 0.817958 | 2.516539e-52 | -8.615850e-47 |
| Msa0677770 | Msa1126850 | 0.811332 | 7.383165e-51 | -8.615850e-47 |
| Msa0677770 | Msa1176980 | 0.800728 | 1.257997e-48 | -8.615850e-47 |
| Msa0677770 | Msa1179980 | 0.804861 | 1.763193e-49 | -8.615850e-47 |
| Msa0677770 | Msa1253810 | 0.811620 | 6.390999e-51 | -8.615850e-47 |
| Msa0677770 | Msa1269300 | 0.806995 | 6.273743e-50 | -8.615850e-47 |
| Msa0677770 | Msa1270620 | 0.800777 | 1.228914e-48 | -8.615850e-47 |
| Msa0677770 | Msa1270690 | 0.802630 | 5.120260e-49 | -8.615850e-47 |
| Msa0677770 | Msa1286510 | 0.811719 | 6.082139e-51 | -8.615850e-47 |
| Msa0677770 | Msa1294960 | 0.803045 | 4.203545e-49 | -8.615850e-47 |
| Msa0677770 | Msa1323990 | 0.803092 | 4.110978e-49 | -8.615850e-47 |
| Msa0677770 | Msa1461490 | 0.810276 | 1.249158e-50 | -8.615850e-47 |
| Msa0121590 | Msa0677770 | 0.818632 | 1.771438e-52 | -8.615850e-47 |
| Msa0126770 | Msa0677770 | 0.816301 | 5.935421e-52 | -8.615850e-47 |
| Msa0138160 | Msa0677770 | 0.806074 | 9.811999e-50 | -8.615850e-47 |
| Msa0167480 | Msa0677770 | 0.810490 | 1.123192e-50 | -8.615850e-47 |
| Msa0171850 | Msa0677770 | 0.816220 | 6.187068e-52 | -8.615850e-47 |
| Msa0177210 | Msa0677770 | 0.802498 | 5.453882e-49 | -8.615850e-47 |
| Msa0183460 | Msa0677770 | 0.837031 | 6.606552e-57 | -8.615850e-47 |
| Msa0392940 | Msa0677770 | 0.821454 | 4.003148e-53 | -8.615850e-47 |
| Msa0416400 | Msa0677770 | 0.801069 | 1.071343e-48 | -8.615850e-47 |
| Msa0469790 | Msa0677770 | 0.801958 | 7.042945e-49 | -8.615850e-47 |
| Msa0239490 | Msa0677770 | 0.812055 | 5.140453e-51 | -8.615850e-47 |
| Msa0259160 | Msa0677770 | 0.803290 | 3.741571e-49 | -8.615850e-47 |
| Msa0280430 | Msa0677770 | 0.802222 | 6.214637e-49 | -8.615850e-47 |
| Msa0306710 | Msa0677770 | 0.805052 | 1.608265e-49 | -8.615850e-47 |
| Msa0497030 | Msa0677770 | 0.809334 | 1.992026e-50 | -8.615850e-47 |
| Msa0511490 | Msa0677770 | 0.803562 | 3.285054e-49 | -8.615850e-47 |
| Msa0517490 | Msa0677770 | 0.801178 | 1.017920e-48 | -8.615850e-47 |
| Msa0545080 | Msa0677770 | 0.800141 | 1.656623e-48 | -8.615850e-47 |
| Msa0546570 | Msa0677770 | 0.803239 | 3.832821e-49 | -8.615850e-47 |
| Msa0561430 | Msa0677770 | 0.808323 | 3.277232e-50 | -8.615850e-47 |
| Msa0590370 | Msa0677770 | 0.852181 | 5.464151e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677770 | MtrunA17_Chr8g0345501 | 60.804 | 199 | 59 | 4 | 1 | 199 | 535 | 714 | 1.30e-71 | 233 |
| Msa0677770 | MtrunA17_Chr2g0313001 | 81.818 | 77 | 10 | 1 | 153 | 229 | 53 | 125 | 4.23e-36 | 125 |
| Msa0677770 | MtrunA17_Chr8g0345511 | 55.102 | 98 | 37 | 2 | 56 | 153 | 16 | 106 | 2.87e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAACTGATTTGGATATA+TGG | 0.220847 | 4_4:-32375075 | Msa0677770:CDS |
| TCGTTTACATTGGAATAAAA+TGG | 0.272094 | 4_4:-32375556 | Msa0677770:intron |
| TGCTGCCATTATGAAACATT+TGG | 0.286335 | 4_4:-32374813 | Msa0677770:CDS |
| GTATGAAATGCCAACTGATT+TGG | 0.307692 | 4_4:-32375083 | Msa0677770:CDS |
| TGCTCATTTGATTCACTGTT+GGG | 0.320236 | 4_4:+32374758 | None:intergenic |
| CTTCCGTACACATCGCAAAA+AGG | 0.331253 | 4_4:-32375418 | Msa0677770:CDS |
| TAAAAGAAATCGCAATTCTA+TGG | 0.339144 | 4_4:-32375616 | Msa0677770:exon |
| GTAAGGAGTGTGTTGATCTT+TGG | 0.351346 | 4_4:-32374226 | Msa0677770:CDS |
| ATGAAACATTTGGGATTTGT+TGG | 0.353696 | 4_4:-32374803 | Msa0677770:CDS |
| GCTGCCATTATGAAACATTT+GGG | 0.392254 | 4_4:-32374812 | Msa0677770:CDS |
| CACTGTTGGGGTTTGAAACA+TGG | 0.393708 | 4_4:+32374771 | None:intergenic |
| TGTATTAAAACTGCCACAAA+AGG | 0.406776 | 4_4:+32374128 | None:intergenic |
| GCCAACTGATTTGGATATAT+GGG | 0.422049 | 4_4:-32375074 | Msa0677770:CDS |
| GGAATGACTTGAAGCAATAT+TGG | 0.425427 | 4_4:-32375674 | Msa0677770:five_prime_UTR |
| AAATCCCAAATGTTTCATAA+TGG | 0.426801 | 4_4:+32374808 | None:intergenic |
| TCAACACACTCCTTACCAAT+TGG | 0.449997 | 4_4:+32374233 | None:intergenic |
| TTGATTTGAAGATGGAATCA+AGG | 0.453518 | 4_4:+32374994 | None:intergenic |
| TCTACTCAGAATACCACATT+TGG | 0.453989 | 4_4:-32375139 | Msa0677770:CDS |
| AGAGCTTCAACGAGCTTCAA+TGG | 0.458931 | 4_4:+32376387 | None:intergenic |
| AAAGGGAGGATATTTGGTCT+TGG | 0.464262 | 4_4:-32375031 | Msa0677770:CDS |
| GTGCTCATTTGATTCACTGT+TGG | 0.469093 | 4_4:+32374757 | None:intergenic |
| CAATTCCCCATCGTTTACAT+TGG | 0.470029 | 4_4:-32375566 | Msa0677770:CDS |
| TGAAACTTGCGAAGTGAAAA+CGG | 0.482528 | 4_4:+32376348 | None:intergenic |
| TTTGTTTGTTGATTTGAAGA+TGG | 0.485071 | 4_4:+32374986 | None:intergenic |
| TTTATTCCAATGTAAACGAT+GGG | 0.487087 | 4_4:+32375560 | None:intergenic |
| TTGGCAGCACTTGCAATCCT+AGG | 0.493302 | 4_4:+32374203 | None:intergenic |
| TCTGCTATCACAGGTCCAAT+TGG | 0.496330 | 4_4:-32374248 | Msa0677770:CDS |
| GATATATGGGTAGATTCTGT+TGG | 0.506068 | 4_4:-32375061 | Msa0677770:CDS |
| CAACATCTTCAGCAAAATCA+TGG | 0.507886 | 4_4:+32374684 | None:intergenic |
| CAACATCTTCAGCAAAATCA+TGG | 0.508374 | 4_4:+32374630 | None:intergenic |
| AGTGTGTTGATCTTTGGCCT+AGG | 0.508867 | 4_4:-32374220 | Msa0677770:CDS |
| AGAAATCGCAATTCTATGGC+TGG | 0.511177 | 4_4:-32375612 | Msa0677770:exon |
| TTGCCACTTTCGAGCTTCAA+CGG | 0.516605 | 4_4:+32376418 | None:intergenic |
| AACAAGAGAAGTTGCAGACG+AGG | 0.520473 | 4_4:-32374886 | Msa0677770:CDS |
| TGCTGAAGATGTTGATGAAG+AGG | 0.530294 | 4_4:-32374675 | Msa0677770:CDS |
| AAATGAGCACATTGATGAAG+AGG | 0.534323 | 4_4:-32374744 | Msa0677770:CDS |
| GCAGAGAAGAGAGCTTCAAT+CGG | 0.538732 | 4_4:+32376301 | None:intergenic |
| ATTGTAGGTTCTGCTATCAC+AGG | 0.547291 | 4_4:-32374257 | Msa0677770:intron |
| CAGAATCAACACTCATACAA+TGG | 0.548660 | 4_4:+32374178 | None:intergenic |
| CAGAATACCACATTTGGTCT+AGG | 0.549997 | 4_4:-32375133 | Msa0677770:CDS |
| GTATTAAAACTGCCACAAAA+GGG | 0.556599 | 4_4:+32374129 | None:intergenic |
| TCAGTTGGCATTTCATACGT+TGG | 0.564003 | 4_4:+32375088 | None:intergenic |
| ACCCATATATCCAAATCAGT+TGG | 0.567496 | 4_4:+32375073 | None:intergenic |
| AAACTGCCACAAAAGGGCAT+TGG | 0.569203 | 4_4:+32374135 | None:intergenic |
| ACTGTTGGGGTTTGAAACAT+GGG | 0.581536 | 4_4:+32374772 | None:intergenic |
| TATCACAGGTCCAATTGGTA+AGG | 0.581708 | 4_4:-32374243 | Msa0677770:CDS |
| GGTGCATCTCTTCACACTGG+AGG | 0.584504 | 4_4:-32375591 | Msa0677770:CDS |
| CAACACTCATACAATGGCAT+TGG | 0.586391 | 4_4:+32374184 | None:intergenic |
| GCTCATTTGATTCACTGTTG+GGG | 0.595706 | 4_4:+32374759 | None:intergenic |
| ATCCTCTCCTAGACCAAATG+TGG | 0.599587 | 4_4:+32375126 | None:intergenic |
| ATTCCGTTGAAGCTCGAAAG+TGG | 0.601299 | 4_4:-32376421 | Msa0677770:five_prime_UTR |
| TACACATGCTAATTCAGAAG+AGG | 0.601418 | 4_4:-32374963 | Msa0677770:CDS |
| GCTGGTGCATCTCTTCACAC+TGG | 0.609772 | 4_4:-32375594 | Msa0677770:CDS |
| TACCACATTTGGTCTAGGAG+AGG | 0.638679 | 4_4:-32375128 | Msa0677770:CDS |
| TTATTCCAATGTAAACGATG+GGG | 0.656802 | 4_4:+32375561 | None:intergenic |
| AAGTAAAACTCAGTCAACGA+CGG | 0.749212 | 4_4:+32375438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAATTTACAGAAAA+AGG | - | chr4_4:32374918-32374937 | Msa0677770:CDS | 10.0% |
| !! | AATTGAATATAGAATCCTTA+GGG | + | chr4_4:32374192-32374211 | None:intergenic | 20.0% |
| !! | ACTTATTTGAACTTATTTAG+TGG | - | chr4_4:32374358-32374377 | Msa0677770:intron | 20.0% |
| !!! | TGAAAATTGAATTTTAGAGA+AGG | - | chr4_4:32374423-32374442 | Msa0677770:intron | 20.0% |
| !! | ACTTATTTGAACTTATTTAC+TGG | - | chr4_4:32374619-32374638 | Msa0677770:CDS | 20.0% |
| !! | AATTTACAGAAAAAGGAAAA+AGG | - | chr4_4:32374925-32374944 | Msa0677770:CDS | 20.0% |
| !!! | CAGTTTTATTTTTTATGCAT+TGG | - | chr4_4:32375180-32375199 | Msa0677770:intron | 20.0% |
| !!! | GACTTCTTTTATTTTCTTTT+AGG | - | chr4_4:32375202-32375221 | Msa0677770:intron | 20.0% |
| !! | CAAATTTGAACAAAAAAAGA+TGG | - | chr4_4:32375226-32375245 | Msa0677770:intron | 20.0% |
| !! | ATATGCTAATATGTGAAAAA+AGG | + | chr4_4:32375881-32375900 | None:intergenic | 20.0% |
| !!! | AATACACATATTTTCAACAA+TGG | + | chr4_4:32375917-32375936 | None:intergenic | 20.0% |
| !!! | AATACAAGTGAAATGTTTTT+AGG | - | chr4_4:32376282-32376301 | Msa0677770:five_prime_UTR | 20.0% |
| ! | CAATTGAATATAGAATCCTT+AGG | + | chr4_4:32374193-32374212 | None:intergenic | 25.0% |
| ! | AGTGATATGTATATTTGACT+TGG | - | chr4_4:32374519-32374538 | Msa0677770:intron | 25.0% |
| ! | ATTACAAACTACTATGAGTT+TGG | - | chr4_4:32374564-32374583 | Msa0677770:intron | 25.0% |
| !! | ACTTATTTGACTTTATGTAG+TGG | - | chr4_4:32374650-32374669 | Msa0677770:CDS | 25.0% |
| !! | TTTATGTAGTGGAATAAGTT+TGG | - | chr4_4:32374661-32374680 | Msa0677770:CDS | 25.0% |
| !! | ACTTATTTGACTTTATGTAG+CGG | - | chr4_4:32374650-32374669 | Msa0677770:CDS | 25.0% |
| !!! | TTGAGATTTTTTTTTGAACG+TGG | + | chr4_4:32374752-32374771 | None:intergenic | 25.0% |
| ! | TAAAAGAAATCGCAATTCTA+TGG | - | chr4_4:32374777-32374796 | Msa0677770:CDS | 25.0% |
| ! | TTTATTCCAATGTAAACGAT+GGG | + | chr4_4:32374836-32374855 | None:intergenic | 25.0% |
| !! | TTTTATTCCAATGTAAACGA+TGG | + | chr4_4:32374837-32374856 | None:intergenic | 25.0% |
| ! | TCGTTTACATTGGAATAAAA+TGG | - | chr4_4:32374837-32374856 | Msa0677770:CDS | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | + | chr4_4:32375142-32375161 | None:intergenic | 25.0% |
| !! | ATTCTGTTGGTAGAAAAAAA+GGG | - | chr4_4:32375345-32375364 | Msa0677770:intron | 25.0% |
| !!! | TTTGTTTGTTGATTTGAAGA+TGG | + | chr4_4:32375410-32375429 | None:intergenic | 25.0% |
| ! | AAATCCCAAATGTTTCATAA+TGG | + | chr4_4:32375588-32375607 | None:intergenic | 25.0% |
| !! | CATATTGATAACTAGTAACT+TGG | - | chr4_4:32375806-32375825 | Msa0677770:intron | 25.0% |
| ! | GTATTGTTATGAATTGTTCT+AGG | - | chr4_4:32375944-32375963 | Msa0677770:intron | 25.0% |
| !! | ATTTTGCAACTTCATAATGA+TGG | - | chr4_4:32376360-32376379 | Msa0677770:five_prime_UTR | 25.0% |
| !! | TAGTCATTTTCTCTCTCATA+AGG | - | chr4_4:32374119-32374138 | Msa0677770:three_prime_UTR | 30.0% |
| TACTTCGAAAACTCTTGATT+AGG | - | chr4_4:32374151-32374170 | Msa0677770:three_prime_UTR | 30.0% | |
| ACTTCGAAAACTCTTGATTA+GGG | - | chr4_4:32374152-32374171 | Msa0677770:three_prime_UTR | 30.0% | |
| CATGATACGAAAACAGAATT+TGG | + | chr4_4:32374248-32374267 | None:intergenic | 30.0% | |
| TTATCTGATATTGCTATCTC+AGG | - | chr4_4:32374310-32374329 | Msa0677770:intron | 30.0% | |
| TATCTGATATTGCTATCTCA+GGG | - | chr4_4:32374311-32374330 | Msa0677770:intron | 30.0% | |
| TTTACTTTGTCTGCTATGAT+TGG | - | chr4_4:32374484-32374503 | Msa0677770:intron | 30.0% | |
| TTACTTTGTCTGCTATGATT+GGG | - | chr4_4:32374485-32374504 | Msa0677770:intron | 30.0% | |
| !! | GATATGTATATTTGACTTGG+TGG | - | chr4_4:32374522-32374541 | Msa0677770:intron | 30.0% |
| !!! | AGATTTTTTTTTGAACGTGG+AGG | + | chr4_4:32374749-32374768 | None:intergenic | 30.0% |
| TTATTCCAATGTAAACGATG+GGG | + | chr4_4:32374835-32374854 | None:intergenic | 30.0% | |
| ! | GATTCTGTTGGTAGAAAAAA+AGG | - | chr4_4:32375344-32375363 | Msa0677770:intron | 30.0% |
| AGAAAAAAAGGGAGGATATT+TGG | - | chr4_4:32375356-32375375 | Msa0677770:intron | 30.0% | |
| ! | TTGATTTGAAGATGGAATCA+AGG | + | chr4_4:32375402-32375421 | None:intergenic | 30.0% |
| ! | ATGAAACATTTGGGATTTGT+TGG | - | chr4_4:32375590-32375609 | Msa0677770:CDS | 30.0% |
| ! | TAACTTGGAGTCTGAAATTA+TGG | - | chr4_4:32375821-32375840 | Msa0677770:intron | 30.0% |
| TAGCAAACTAACAAAAAGAC+AGG | + | chr4_4:32376032-32376051 | None:intergenic | 30.0% | |
| AATCAGACAAAACAGTCAAA+AGG | + | chr4_4:32376065-32376084 | None:intergenic | 30.0% | |
| TTCATTGCTGGTATTTGATT+TGG | - | chr4_4:32376087-32376106 | Msa0677770:intron | 30.0% | |
| ! | TCATTGCTGGTATTTGATTT+GGG | - | chr4_4:32376088-32376107 | Msa0677770:intron | 30.0% |
| GTATTAAAACTGCCACAAAA+GGG | + | chr4_4:32376267-32376286 | None:intergenic | 30.0% | |
| TGTATTAAAACTGCCACAAA+AGG | + | chr4_4:32376268-32376287 | None:intergenic | 30.0% | |
| TGAAACTTGCGAAGTGAAAA+CGG | + | chr4_4:32374048-32374067 | None:intergenic | 35.0% | |
| GTTTATACTCTCAAACCCTA+AGG | - | chr4_4:32374174-32374193 | Msa0677770:exon | 35.0% | |
| !! | CTGTTTGGATTGTTTCTGTT+TGG | - | chr4_4:32374335-32374354 | Msa0677770:intron | 35.0% |
| TGTTCGATGAAATGATTGTG+AGG | - | chr4_4:32374455-32374474 | Msa0677770:intron | 35.0% | |
| TACTTTGTCTGCTATGATTG+GGG | - | chr4_4:32374486-32374505 | Msa0677770:intron | 35.0% | |
| TACTATGAGTTTGGTATCTC+AGG | - | chr4_4:32374573-32374592 | Msa0677770:intron | 35.0% | |
| ACTATGAGTTTGGTATCTCA+GGG | - | chr4_4:32374574-32374593 | Msa0677770:intron | 35.0% | |
| TAAACTGAAACAGTCCAAAC+AGG | + | chr4_4:32374600-32374619 | None:intergenic | 35.0% | |
| GGAATGACTTGAAGCAATAT+TGG | - | chr4_4:32374719-32374738 | Msa0677770:CDS | 35.0% | |
| AAGTAAAACTCAGTCAACGA+CGG | + | chr4_4:32374958-32374977 | None:intergenic | 35.0% | |
| ATCGCAAAAAGGATCAAAGT+TGG | - | chr4_4:32374986-32375005 | Msa0677770:CDS | 35.0% | |
| TCGCAAAAAGGATCAAAGTT+GGG | - | chr4_4:32374987-32375006 | Msa0677770:CDS | 35.0% | |
| AAAAAGGATCAAAGTTGGGT+GGG | - | chr4_4:32374991-32375010 | Msa0677770:CDS | 35.0% | |
| CACATGAGTGCAAACATATA+TGG | + | chr4_4:32375066-32375085 | None:intergenic | 35.0% | |
| TATATGTTTGCACTCATGTG+TGG | - | chr4_4:32375066-32375085 | Msa0677770:CDS | 35.0% | |
| TCTACTCAGAATACCACATT+TGG | - | chr4_4:32375254-32375273 | Msa0677770:intron | 35.0% | |
| GTATGAAATGCCAACTGATT+TGG | - | chr4_4:32375310-32375329 | Msa0677770:intron | 35.0% | |
| !! | TGCCAACTGATTTGGATATA+TGG | - | chr4_4:32375318-32375337 | Msa0677770:intron | 35.0% |
| !! | GCCAACTGATTTGGATATAT+GGG | - | chr4_4:32375319-32375338 | Msa0677770:intron | 35.0% |
| ACCCATATATCCAAATCAGT+TGG | + | chr4_4:32375323-32375342 | None:intergenic | 35.0% | |
| GATATATGGGTAGATTCTGT+TGG | - | chr4_4:32375332-32375351 | Msa0677770:intron | 35.0% | |
| TACACATGCTAATTCAGAAG+AGG | - | chr4_4:32375430-32375449 | Msa0677770:CDS | 35.0% | |
| TGCTGCCATTATGAAACATT+TGG | - | chr4_4:32375580-32375599 | Msa0677770:CDS | 35.0% | |
| GCTGCCATTATGAAACATTT+GGG | - | chr4_4:32375581-32375600 | Msa0677770:CDS | 35.0% | |
| TGCTCATTTGATTCACTGTT+GGG | + | chr4_4:32375638-32375657 | None:intergenic | 35.0% | |
| AAATGAGCACATTGATGAAG+AGG | - | chr4_4:32375649-32375668 | Msa0677770:five_prime_UTR | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | + | chr4_4:32375679-32375698 | None:intergenic | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | + | chr4_4:32375679-32375698 | None:intergenic | 35.0% | |
| !! | CCATGTGAATACTTTTAGAG+AGG | + | chr4_4:32375992-32376011 | None:intergenic | 35.0% |
| !! | CCTCTCTAAAAGTATTCACA+TGG | - | chr4_4:32375989-32376008 | Msa0677770:intron | 35.0% |
| CAAACTAACAAAAAGACAGG+TGG | + | chr4_4:32376029-32376048 | None:intergenic | 35.0% | |
| ! | TTGTCTGATTGATTCATTGC+TGG | - | chr4_4:32376075-32376094 | Msa0677770:intron | 35.0% |
| TATGTCATGTTGTCCATTGT+AGG | - | chr4_4:32376121-32376140 | Msa0677770:intron | 35.0% | |
| CAGAATCAACACTCATACAA+TGG | + | chr4_4:32376218-32376237 | None:intergenic | 35.0% | |
| AGAAATCGCAATTCTATGGC+TGG | - | chr4_4:32374781-32374800 | Msa0677770:CDS | 40.0% | |
| CAATTCCCCATCGTTTACAT+TGG | - | chr4_4:32374827-32374846 | Msa0677770:CDS | 40.0% | |
| ! | GATCCTTTTTGCGATGTGTA+CGG | + | chr4_4:32374981-32375000 | None:intergenic | 40.0% |
| CAAAAAGGATCAAAGTTGGG+TGG | - | chr4_4:32374990-32375009 | Msa0677770:CDS | 40.0% | |
| CAGAATACCACATTTGGTCT+AGG | - | chr4_4:32375260-32375279 | Msa0677770:intron | 40.0% | |
| TCAGTTGGCATTTCATACGT+TGG | + | chr4_4:32375308-32375327 | None:intergenic | 40.0% | |
| ! | CTGTTGGTAGAAAAAAAGGG+AGG | - | chr4_4:32375348-32375367 | Msa0677770:intron | 40.0% |
| AAAGGGAGGATATTTGGTCT+TGG | - | chr4_4:32375362-32375381 | Msa0677770:intron | 40.0% | |
| ! | ACTGTTGGGGTTTGAAACAT+GGG | + | chr4_4:32375624-32375643 | None:intergenic | 40.0% |
| GCTCATTTGATTCACTGTTG+GGG | + | chr4_4:32375637-32375656 | None:intergenic | 40.0% | |
| GTGCTCATTTGATTCACTGT+TGG | + | chr4_4:32375639-32375658 | None:intergenic | 40.0% | |
| ! | TGCTGAAGATGTTGATGAAG+AGG | - | chr4_4:32375685-32375704 | Msa0677770:intron | 40.0% |
| TGTGATAGCAGAACCTACAA+TGG | + | chr4_4:32376137-32376156 | None:intergenic | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+AGG | - | chr4_4:32376136-32376155 | Msa0677770:intron | 40.0% | |
| TATCACAGGTCCAATTGGTA+AGG | - | chr4_4:32376150-32376169 | Msa0677770:intron | 40.0% | |
| TCAACACACTCCTTACCAAT+TGG | + | chr4_4:32376163-32376182 | None:intergenic | 40.0% | |
| ! | GTAAGGAGTGTGTTGATCTT+TGG | - | chr4_4:32376167-32376186 | Msa0677770:intron | 40.0% |
| CAACACTCATACAATGGCAT+TGG | + | chr4_4:32376212-32376231 | None:intergenic | 40.0% | |
| !! | TTGCCACTTTCGAGCTTCAA+CGG | + | chr4_4:32373978-32373997 | None:intergenic | 45.0% |
| AGAGCTTCAACGAGCTTCAA+TGG | + | chr4_4:32374009-32374028 | None:intergenic | 45.0% | |
| GCAGAGAAGAGAGCTTCAAT+CGG | + | chr4_4:32374095-32374114 | None:intergenic | 45.0% | |
| TTGCTATCTCAGGGACTGTT+TGG | - | chr4_4:32374320-32374339 | Msa0677770:intron | 45.0% | |
| CTGCTATGATTGGGGCTTAT+AGG | - | chr4_4:32374494-32374513 | Msa0677770:intron | 45.0% | |
| CTTCCGTACACATCGCAAAA+AGG | - | chr4_4:32374975-32374994 | Msa0677770:CDS | 45.0% | |
| GTGTGGCTCAAAGGAAGATT+TGG | - | chr4_4:32375083-32375102 | Msa0677770:CDS | 45.0% | |
| TACCACATTTGGTCTAGGAG+AGG | - | chr4_4:32375265-32375284 | Msa0677770:intron | 45.0% | |
| ATCCTCTCCTAGACCAAATG+TGG | + | chr4_4:32375270-32375289 | None:intergenic | 45.0% | |
| AACAAGAGAAGTTGCAGACG+AGG | - | chr4_4:32375507-32375526 | Msa0677770:intron | 45.0% | |
| ! | CACTGTTGGGGTTTGAAACA+TGG | + | chr4_4:32375625-32375644 | None:intergenic | 45.0% |
| TCTGCTATCACAGGTCCAAT+TGG | - | chr4_4:32376145-32376164 | Msa0677770:intron | 45.0% | |
| ! | AGTGTGTTGATCTTTGGCCT+AGG | - | chr4_4:32376173-32376192 | Msa0677770:intron | 45.0% |
| ! | GTAGTTCCAATGCCCTTTTG+TGG | - | chr4_4:32376252-32376271 | Msa0677770:intron | 45.0% |
| ! | AAACTGCCACAAAAGGGCAT+TGG | + | chr4_4:32376261-32376280 | None:intergenic | 45.0% |
| TTGGTATCTCAGGGCCTGTT+TGG | - | chr4_4:32374583-32374602 | Msa0677770:intron | 50.0% | |
| TGCACTCATGTGTGGCTCAA+AGG | - | chr4_4:32375074-32375093 | Msa0677770:CDS | 50.0% | |
| TTGGCAGCACTTGCAATCCT+AGG | + | chr4_4:32376193-32376212 | None:intergenic | 50.0% | |
| GCTGGTGCATCTCTTCACAC+TGG | - | chr4_4:32374799-32374818 | Msa0677770:CDS | 55.0% | |
| GGTGCATCTCTTCACACTGG+AGG | - | chr4_4:32374802-32374821 | Msa0677770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 32373975 | 32376440 | 32373975 | ID=Msa0677770;Name=Msa0677770 |
| chr4_4 | mRNA | 32373975 | 32376440 | 32373975 | ID=Msa0677770-mRNA-1;Parent=Msa0677770;Name=Msa0677770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=244|0.75|0.8|1|0.75|0.6|5|215|273 |
| chr4_4 | exon | 32373975 | 32374272 | 32373975 | ID=Msa0677770-mRNA-1:exon:7925;Parent=Msa0677770-mRNA-1 |
| chr4_4 | exon | 32374618 | 32375191 | 32374618 | ID=Msa0677770-mRNA-1:exon:7924;Parent=Msa0677770-mRNA-1 |
| chr4_4 | exon | 32375380 | 32375481 | 32375380 | ID=Msa0677770-mRNA-1:exon:7923;Parent=Msa0677770-mRNA-1 |
| chr4_4 | exon | 32375557 | 32375697 | 32375557 | ID=Msa0677770-mRNA-1:exon:7922;Parent=Msa0677770-mRNA-1 |
| chr4_4 | exon | 32376275 | 32376440 | 32376275 | ID=Msa0677770-mRNA-1:exon:7921;Parent=Msa0677770-mRNA-1 |
| chr4_4 | five_prime_UTR | 32376275 | 32376440 | 32376275 | ID=Msa0677770-mRNA-1:five_prime_utr;Parent=Msa0677770-mRNA-1 |
| chr4_4 | five_prime_UTR | 32375620 | 32375697 | 32375620 | ID=Msa0677770-mRNA-1:five_prime_utr;Parent=Msa0677770-mRNA-1 |
| chr4_4 | CDS | 32375557 | 32375619 | 32375557 | ID=Msa0677770-mRNA-1:cds;Parent=Msa0677770-mRNA-1 |
| chr4_4 | CDS | 32375380 | 32375481 | 32375380 | ID=Msa0677770-mRNA-1:cds;Parent=Msa0677770-mRNA-1 |
| chr4_4 | CDS | 32374618 | 32375191 | 32374618 | ID=Msa0677770-mRNA-1:cds;Parent=Msa0677770-mRNA-1 |
| chr4_4 | CDS | 32374190 | 32374272 | 32374190 | ID=Msa0677770-mRNA-1:cds;Parent=Msa0677770-mRNA-1 |
| chr4_4 | three_prime_UTR | 32373975 | 32374189 | 32373975 | ID=Msa0677770-mRNA-1:three_prime_utr;Parent=Msa0677770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
