Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089010 | Msa1351070 | 0.811539 | 6.654519e-51 | -8.615850e-47 |
| Msa1351070 | Msa1408900 | 0.818360 | 2.041586e-52 | -8.615850e-47 |
| Msa1351070 | Msa1412280 | 0.809332 | 1.993743e-50 | -8.615850e-47 |
| Msa1351070 | Msa1459170 | 0.804600 | 1.998800e-49 | -8.615850e-47 |
| Msa0629960 | Msa1351070 | 0.804592 | 2.006129e-49 | -8.615850e-47 |
| Msa0754190 | Msa1351070 | 0.805697 | 1.177667e-49 | -8.615850e-47 |
| Msa0180290 | Msa1351070 | 0.810802 | 9.616825e-51 | -8.615850e-47 |
| Msa1235940 | Msa1351070 | 0.824034 | 1.004434e-53 | -8.615850e-47 |
| Msa1256430 | Msa1351070 | 0.822552 | 2.228679e-53 | -8.615850e-47 |
| Msa1277580 | Msa1351070 | 0.827829 | 1.260466e-54 | -8.615850e-47 |
| Msa1279310 | Msa1351070 | 0.825760 | 3.932899e-54 | -8.615850e-47 |
| Msa1009150 | Msa1351070 | 0.845274 | 4.497916e-59 | -8.615850e-47 |
| Msa1009170 | Msa1351070 | 0.838311 | 3.101679e-57 | -8.615850e-47 |
| Msa1098340 | Msa1351070 | 0.856949 | 2.275981e-62 | -8.615850e-47 |
| Msa1098350 | Msa1351070 | 0.838629 | 2.567784e-57 | -8.615850e-47 |
| Msa0359630 | Msa1351070 | 0.809147 | 2.184658e-50 | -8.615850e-47 |
| Msa1138480 | Msa1351070 | 0.817662 | 2.936105e-52 | -8.615850e-47 |
| Msa1138490 | Msa1351070 | 0.848403 | 6.267883e-60 | -8.615850e-47 |
| Msa1145930 | Msa1351070 | 0.802796 | 4.732530e-49 | -8.615850e-47 |
| Msa1175850 | Msa1351070 | 0.813367 | 2.653794e-51 | -8.615850e-47 |
| Msa1204470 | Msa1351070 | 0.821531 | 3.841996e-53 | -8.615850e-47 |
| Msa0593250 | Msa1351070 | 0.812555 | 3.997080e-51 | -8.615850e-47 |
| Msa0593260 | Msa1351070 | 0.807524 | 4.846110e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351070 | MtrunA17_Chr3g0083481 | 56.627 | 83 | 20 | 7 | 84 | 158 | 10 | 84 | 2.06e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAGTGATGCTTGTTATT+TGG | 0.173222 | tig0012121:+284 | Msa1351070:CDS |
| AACCATATGGCCTGTTGTTC+GGG | 0.286161 | tig0012121:-2790 | None:intergenic |
| TCCCCTGCCATCGTCAGATT+TGG | 0.324141 | tig0012121:-433 | None:intergenic |
| GGTGGACCACGTCGACAATT+TGG | 0.328830 | tig0012121:-2890 | None:intergenic |
| GAACCATATGGCCTGTTGTT+CGG | 0.353632 | tig0012121:-2791 | None:intergenic |
| CTCCTCCTTGCCCGAACAAC+AGG | 0.354261 | tig0012121:+2780 | Msa1351070:CDS |
| GCTAAGGTTTCCACGTGAAT+AGG | 0.359375 | tig0012121:-223 | None:intergenic |
| CTCCTTGCTCGCCGAACAGC+CGG | 0.363688 | tig0012121:+2858 | Msa1351070:CDS |
| TGCTGAAAACAATTATCTAC+TGG | 0.385508 | tig0012121:+482 | Msa1351070:CDS |
| GGCAAGGAGGAGTTGTAACT+TGG | 0.385616 | tig0012121:-2769 | None:intergenic |
| GGATCATATACCCGGCTGTT+CGG | 0.432569 | tig0012121:-2869 | None:intergenic |
| TTTCCAAATCTGACGATGGC+AGG | 0.440047 | tig0012121:+430 | Msa1351070:CDS |
| TGCCCGAACAACAGGCCATA+TGG | 0.467664 | tig0012121:+2788 | Msa1351070:CDS |
| TCTGACGATGGCAGGGGACG+AGG | 0.475481 | tig0012121:+438 | Msa1351070:CDS |
| AATACTGTTTCTTTCAAGCC+AGG | 0.476251 | tig0012121:+2743 | Msa1351070:CDS |
| TGTGCCACATACAAACCTTC+CGG | 0.476709 | tig0012121:-537 | None:intergenic |
| GCTCTTATGCTTGTTCCTCA+AGG | 0.479969 | tig0012121:+2713 | Msa1351070:CDS |
| AACAGGCCATATGGTTCAGC+TGG | 0.492895 | tig0012121:+2797 | Msa1351070:CDS |
| AGACAACCAGCTGAACCATA+TGG | 0.492937 | tig0012121:-2803 | None:intergenic |
| ACCCGGCTGTTCGGCGAGCA+AGG | 0.525220 | tig0012121:-2860 | None:intergenic |
| AATTGTACCACGCATTGCTA+AGG | 0.531736 | tig0012121:-239 | None:intergenic |
| GCAAGGAGGAGTTGTAACTT+GGG | 0.543967 | tig0012121:-2768 | None:intergenic |
| GGAGTTCTAAATGTGTGGCC+TGG | 0.549674 | tig0012121:-2836 | None:intergenic |
| GACAATTTGGATCATATACC+CGG | 0.551676 | tig0012121:-2877 | None:intergenic |
| TCCTTGCTCGCCGAACAGCC+GGG | 0.551872 | tig0012121:+2859 | Msa1351070:CDS |
| TTCCAAATCTGACGATGGCA+GGG | 0.553847 | tig0012121:+431 | Msa1351070:CDS |
| TATGGCCTGTTGTTCGGGCA+AGG | 0.563158 | tig0012121:-2785 | None:intergenic |
| ATAAACTTGTTCAGAAACTC+CGG | 0.563498 | tig0012121:+518 | Msa1351070:CDS |
| TCCAAATCTGACGATGGCAG+GGG | 0.572024 | tig0012121:+432 | Msa1351070:CDS |
| TGCTTCTCGTCCTATTCACG+TGG | 0.599877 | tig0012121:+213 | Msa1351070:CDS |
| CTGACGATGGCAGGGGACGA+GGG | 0.613499 | tig0012121:+439 | Msa1351070:CDS |
| CAAGGAGGAGTTGTAACTTG+GGG | 0.615642 | tig0012121:-2767 | None:intergenic |
| GGTTGTCTATCAAATAAGCC+AGG | 0.618010 | tig0012121:+2818 | Msa1351070:CDS |
| ACTTGTTCAGAAACTCCGGA+AGG | 0.630459 | tig0012121:+522 | Msa1351070:CDS |
| AAGGAGGAGTTCTAAATGTG+TGG | 0.637703 | tig0012121:-2841 | None:intergenic |
| CGGCTGTTCGGCGAGCAAGG+AGG | 0.661518 | tig0012121:-2857 | None:intergenic |
| GATGTTTCCAAATCTGACGA+TGG | 0.663090 | tig0012121:+426 | Msa1351070:CDS |
| GGCCTGTTGTTCGGGCAAGG+AGG | 0.681147 | tig0012121:-2782 | None:intergenic |
| GTGGAAACCTTAGCAATGCG+TGG | 0.686228 | tig0012121:+232 | Msa1351070:CDS |
| GAACAAGCATAAGAGCAGCA+AGG | 0.695127 | tig0012121:-2706 | None:intergenic |
| AAGGAGGAGTTGTAACTTGG+GGG | 0.704071 | tig0012121:-2766 | None:intergenic |
| TATGATCCAAATTGTCGACG+TGG | 0.726414 | tig0012121:+2884 | Msa1351070:CDS |
| ACAGTATTAGCAAATCCTTG+AGG | 0.729026 | tig0012121:-2728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTAAAATTATATAT+AGG | - | tig0012121:2161-2180 | None:intergenic | 0.0% |
| !!! | TAATAAATAATTTTAAATTA+TGG | + | tig0012121:2215-2234 | Msa1351070:intron | 0.0% |
| !!! | AATAAATAATTTTAAATTAT+GGG | + | tig0012121:2216-2235 | Msa1351070:intron | 0.0% |
| !! | AACAAATGAAAAATTAATTA+CGG | + | tig0012121:1195-1214 | Msa1351070:intron | 10.0% |
| !!! | TTTTTTGTTTTTATTTTCTA+GGG | + | tig0012121:2035-2054 | Msa1351070:intron | 10.0% |
| !! | GAATTATTAGGAAAATAAAA+AGG | - | tig0012121:345-364 | None:intergenic | 15.0% |
| !!! | TTACTTTAGAACTTTTTATT+TGG | + | tig0012121:752-771 | Msa1351070:intron | 15.0% |
| !! | TCAAAAAGAAAAAGTAAAAA+GGG | + | tig0012121:782-801 | Msa1351070:intron | 15.0% |
| !! | ACAAATGAAAAATTAATTAC+GGG | + | tig0012121:1196-1215 | Msa1351070:intron | 15.0% |
| !!! | ATCGCTTTAATTTATATATA+TGG | - | tig0012121:1992-2011 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTTTTTATTTTCT+AGG | + | tig0012121:2034-2053 | Msa1351070:intron | 15.0% |
| !!! | TTTTTGTTTTTATTTTCTAG+GGG | + | tig0012121:2036-2055 | Msa1351070:intron | 15.0% |
| !!! | ATGTGATAATTACTTTTAAT+TGG | - | tig0012121:2065-2084 | None:intergenic | 15.0% |
| !!! | TTATTTATTTTTGGTACAAT+AGG | - | tig0012121:2249-2268 | None:intergenic | 15.0% |
| !!! | TATCAATTTTTTTATGAGAA+CGG | + | tig0012121:2274-2293 | Msa1351070:intron | 15.0% |
| !! | AATAATATCACTTCTTAAAA+TGG | + | tig0012121:2649-2668 | Msa1351070:intron | 15.0% |
| !!! | AAATAGAAGCATGAATTATT+AGG | - | tig0012121:357-376 | None:intergenic | 20.0% |
| !! | TTCCTAGCAAAAATAAAATA+GGG | - | tig0012121:620-639 | None:intergenic | 20.0% |
| !! | TTTCCTAGCAAAAATAAAAT+AGG | - | tig0012121:621-640 | None:intergenic | 20.0% |
| !! | GTCAAAAAGAAAAAGTAAAA+AGG | + | tig0012121:781-800 | Msa1351070:intron | 20.0% |
| !! | ATAAATCGATCTAATATCAA+TGG | + | tig0012121:910-929 | Msa1351070:intron | 20.0% |
| !! | TAAATCGATCTAATATCAAT+GGG | + | tig0012121:911-930 | Msa1351070:intron | 20.0% |
| !!! | GATTCCATTATTTTTTCAAA+TGG | + | tig0012121:938-957 | Msa1351070:intron | 20.0% |
| !!! | GTTTTCGAAGAAAAAAAATA+GGG | - | tig0012121:1009-1028 | None:intergenic | 20.0% |
| !!! | TGTTTTCGAAGAAAAAAAAT+AGG | - | tig0012121:1010-1029 | None:intergenic | 20.0% |
| !!! | TAGAATTTTTCAGATTTATC+CGG | + | tig0012121:1066-1085 | Msa1351070:intron | 20.0% |
| !! | TGTTTGATTAAACCATTATT+TGG | - | tig0012121:1179-1198 | None:intergenic | 20.0% |
| !!! | TTGTCTCTTAACTATTTTTT+TGG | - | tig0012121:1234-1253 | None:intergenic | 20.0% |
| !! | TTATACAGACAATGATATTA+TGG | + | tig0012121:1313-1332 | Msa1351070:intron | 20.0% |
| !!! | TGATACTTTAGAAAAGAATA+TGG | + | tig0012121:1658-1677 | Msa1351070:intron | 20.0% |
| !! | TAACATCAATAGTGTATATA+GGG | - | tig0012121:1863-1882 | None:intergenic | 20.0% |
| !! | ATAACATCAATAGTGTATAT+AGG | - | tig0012121:1864-1883 | None:intergenic | 20.0% |
| !!! | ATACGAAAGATTTTTTCTAA+AGG | + | tig0012121:1902-1921 | Msa1351070:intron | 20.0% |
| !!! | TAATTTTAAATTATGGGCTT+TGG | + | tig0012121:2222-2241 | Msa1351070:intron | 20.0% |
| !! | AAAAATGTGATAAACAGTTT+AGG | - | tig0012121:2330-2349 | None:intergenic | 20.0% |
| !! | ATTTACTACATGTCAAAATT+TGG | - | tig0012121:2544-2563 | None:intergenic | 20.0% |
| !! | AGTGATATTATTATTAGTGT+TGG | - | tig0012121:2641-2660 | None:intergenic | 20.0% |
| !!! | TTCCCTATTTTATTTTTGCT+AGG | + | tig0012121:615-634 | Msa1351070:intron | 25.0% |
| !!! | ATCTGTTATTCTATTTTTGC+CGG | + | tig0012121:648-667 | Msa1351070:intron | 25.0% |
| !!! | AAGTAAAAAGGGTATGTTTT+TGG | + | tig0012121:793-812 | Msa1351070:intron | 25.0% |
| ! | GTCAGAACTTTATATTTGAT+TGG | + | tig0012121:876-895 | Msa1351070:intron | 25.0% |
| ! | ATGGCCATTTGAAAAAATAA+TGG | - | tig0012121:945-964 | None:intergenic | 25.0% |
| ! | AAGTAAATCTCTTCAACTAA+TGG | - | tig0012121:964-983 | None:intergenic | 25.0% |
| !!! | CTATTTTTTTGGTACCATTT+TGG | - | tig0012121:1223-1242 | None:intergenic | 25.0% |
| ! | TAAAAGAATCCTACAACTTA+AGG | + | tig0012121:1270-1289 | Msa1351070:intron | 25.0% |
| !! | AAAAAATGTCCTTAAGTTGT+AGG | - | tig0012121:1282-1301 | None:intergenic | 25.0% |
| ! | AACAAAGAAAAACAACTTCA+GGG | - | tig0012121:1492-1511 | None:intergenic | 25.0% |
| ! | AAACAAAGAAAAACAACTTC+AGG | - | tig0012121:1493-1512 | None:intergenic | 25.0% |
| ! | TAGAAAAAATCTTTCGTATG+TGG | - | tig0012121:1901-1920 | None:intergenic | 25.0% |
| ! | TTAAAGCGATAAAACTATAC+TGG | + | tig0012121:2002-2021 | Msa1351070:intron | 25.0% |
| ! | TAAAATGCTCGATTTAAGTA+TGG | + | tig0012121:2356-2375 | Msa1351070:intron | 25.0% |
| ! | TTAAAAGAAAGACAAGCATT+TGG | + | tig0012121:2398-2417 | Msa1351070:intron | 25.0% |
| ! | TAAAAGAAAGACAAGCATTT+GGG | + | tig0012121:2399-2418 | Msa1351070:intron | 25.0% |
| !! | ATCAAGTTTTCCAAATACAT+TGG | + | tig0012121:2485-2504 | Msa1351070:intron | 25.0% |
| ! | ATAATACATATGGAGTTAAC+TGG | - | tig0012121:2615-2634 | None:intergenic | 25.0% |
| ! | CACTAATAAGGATAAGAAAA+AGG | - | tig0012121:2681-2700 | None:intergenic | 25.0% |
| !! | TACAAGTGATGCTTGTTATT+TGG | + | tig0012121:284-303 | Msa1351070:CDS | 30.0% |
| ! | CTATTTCTTGATGTTCAACA+AGG | + | tig0012121:371-390 | Msa1351070:intron | 30.0% |
| TGCTGAAAACAATTATCTAC+TGG | + | tig0012121:482-501 | Msa1351070:CDS | 30.0% | |
| ! | ATAAACTTGTTCAGAAACTC+CGG | + | tig0012121:518-537 | Msa1351070:CDS | 30.0% |
| ! | GGAAACACAATTTTGTATGT+AGG | + | tig0012121:583-602 | Msa1351070:intron | 30.0% |
| !!! | TCTGTTATTCTATTTTTGCC+GGG | + | tig0012121:649-668 | Msa1351070:intron | 30.0% |
| !! | AAGAGATTTACTTTTCCCAT+CGG | + | tig0012121:971-990 | Msa1351070:intron | 30.0% |
| TCTATTCGAAACCAATAATC+CGG | - | tig0012121:1041-1060 | None:intergenic | 30.0% | |
| ! | TTTATCCGGATTTTAAACTC+CGG | + | tig0012121:1080-1099 | Msa1351070:intron | 30.0% |
| AATTAATTACGGGACCAAAA+TGG | + | tig0012121:1206-1225 | Msa1351070:intron | 30.0% | |
| AGAGACAAAAAGAACGATTT+AGG | + | tig0012121:1246-1265 | Msa1351070:intron | 30.0% | |
| GAACATATTCTTTCCATATG+TGG | + | tig0012121:1380-1399 | Msa1351070:intron | 30.0% | |
| ! | TTGCTTTCCTTGAATTTGTT+TGG | + | tig0012121:1436-1455 | Msa1351070:intron | 30.0% |
| !! | TCCTTGAATTTGTTTGGTTT+TGG | + | tig0012121:1442-1461 | Msa1351070:intron | 30.0% |
| AGAATGTTGTATTACTCAGA+TGG | + | tig0012121:1634-1653 | Msa1351070:intron | 30.0% | |
| AAGAAGAGACAGAAAAAATG+TGG | - | tig0012121:1741-1760 | None:intergenic | 30.0% | |
| TTACAACCAACCATTAGATA+AGG | + | tig0012121:1793-1812 | Msa1351070:intron | 30.0% | |
| ATGACAGAGAACAAAATACA+CGG | + | tig0012121:1819-1838 | Msa1351070:intron | 30.0% | |
| !!! | TTGTTTTTATTTTCTAGGGG+TGG | + | tig0012121:2039-2058 | Msa1351070:intron | 30.0% |
| AAAAGAAAGACAAGCATTTG+GGG | + | tig0012121:2400-2419 | Msa1351070:intron | 30.0% | |
| ATAGAGCCAAAAACACTATA+TGG | + | tig0012121:2425-2444 | Msa1351070:intron | 30.0% | |
| ! | ACAAGACCATATAGTGTTTT+TGG | - | tig0012121:2434-2453 | None:intergenic | 30.0% |
| ! | CTTGTTGTGTGGAAAATTAA+AGG | + | tig0012121:2449-2468 | Msa1351070:intron | 30.0% |
| TGTGTGGAAAATTAAAGGAT+TGG | + | tig0012121:2454-2473 | Msa1351070:intron | 30.0% | |
| TTCAACAATGTTACACTCAT+AGG | - | tig0012121:2512-2531 | None:intergenic | 30.0% | |
| ! | TTTGTATGTGGCACATTTTC+CGG | + | tig0012121:545-564 | Msa1351070:intron | 35.0% |
| !! | GTTTTTGGAAGTGATCAAGA+TGG | + | tig0012121:808-827 | Msa1351070:intron | 35.0% |
| AAACCAATAATCCGGACAAA+GGG | - | tig0012121:1033-1052 | None:intergenic | 35.0% | |
| ! | TCATAGGTTGACTAACATTC+CGG | - | tig0012121:1126-1145 | None:intergenic | 35.0% |
| TGTTAGTCAACCTATGACAT+TGG | + | tig0012121:1129-1148 | Msa1351070:intron | 35.0% | |
| !!! | GGAGGTACTTTTTAGTGAAA+TGG | + | tig0012121:1408-1427 | Msa1351070:intron | 35.0% |
| GCCAAAACCAAACAAATTCA+AGG | - | tig0012121:1446-1465 | None:intergenic | 35.0% | |
| GATAGCAAAAGAGAATTGAC+AGG | - | tig0012121:1691-1710 | None:intergenic | 35.0% | |
| ACAGAAAAAATGTGGATGGA+CGG | - | tig0012121:1733-1752 | None:intergenic | 35.0% | |
| AGAGACAGAAAAAATGTGGA+TGG | - | tig0012121:1737-1756 | None:intergenic | 35.0% | |
| CATGTTCCTTATCTAATGGT+TGG | - | tig0012121:1802-1821 | None:intergenic | 35.0% | |
| CTGTCATGTTCCTTATCTAA+TGG | - | tig0012121:1806-1825 | None:intergenic | 35.0% | |
| TGACAGAGAACAAAATACAC+GGG | + | tig0012121:1820-1839 | Msa1351070:intron | 35.0% | |
| TTTCGTATGTGGTTATTGTG+TGG | - | tig0012121:1890-1909 | None:intergenic | 35.0% | |
| ! | GGAGAGAGAGCATAATATAT+GGG | - | tig0012121:1945-1964 | None:intergenic | 35.0% |
| ! | AGGAGAGAGAGCATAATATA+TGG | - | tig0012121:1946-1965 | None:intergenic | 35.0% |
| CTCTCCTGTTCTTTATTCAA+TGG | + | tig0012121:1959-1978 | Msa1351070:intron | 35.0% | |
| TCCTGTTCTTTATTCAATGG+CGG | + | tig0012121:1962-1981 | Msa1351070:intron | 35.0% | |
| ACTCATAGGTCCAATGTATT+TGG | - | tig0012121:2498-2517 | None:intergenic | 35.0% | |
| AGAGACTCAATGTGAGTTTA+TGG | - | tig0012121:2579-2598 | None:intergenic | 35.0% | |
| ! | GTGTTGGTGCATAATACATA+TGG | - | tig0012121:2625-2644 | None:intergenic | 35.0% |
| AGCAAGGAACAACACTAATA+AGG | - | tig0012121:2693-2712 | None:intergenic | 35.0% | |
| ACAGTATTAGCAAATCCTTG+AGG | - | tig0012121:2731-2750 | None:intergenic | 35.0% | |
| ! | AATACTGTTTCTTTCAAGCC+AGG | + | tig0012121:2743-2762 | Msa1351070:CDS | 35.0% |
| GACAATTTGGATCATATACC+CGG | - | tig0012121:2880-2899 | None:intergenic | 35.0% | |
| AATTGTACCACGCATTGCTA+AGG | - | tig0012121:242-261 | None:intergenic | 40.0% | |
| GATGTTTCCAAATCTGACGA+TGG | + | tig0012121:426-445 | Msa1351070:CDS | 40.0% | |
| !!! | TTTCCGGATTCTAGCTTTTC+AGG | + | tig0012121:561-580 | Msa1351070:intron | 40.0% |
| !!! | TTCCGGATTCTAGCTTTTCA+GGG | + | tig0012121:562-581 | Msa1351070:intron | 40.0% |
| TTCCCTGAAAAGCTAGAATC+CGG | - | tig0012121:567-586 | None:intergenic | 40.0% | |
| ACAACGAGTCATGTTGCATT+TGG | + | tig0012121:690-709 | Msa1351070:intron | 40.0% | |
| GAAACCAATAATCCGGACAA+AGG | - | tig0012121:1034-1053 | None:intergenic | 40.0% | |
| ! | CCATTCCGGAGTTTAAAATC+CGG | - | tig0012121:1088-1107 | None:intergenic | 40.0% |
| !! | GTTCTGGAAAAAGACCATTC+CGG | - | tig0012121:1102-1121 | None:intergenic | 40.0% |
| ! | ATGGTCTTTTTCCAGAACTC+CGG | + | tig0012121:1104-1123 | Msa1351070:intron | 40.0% |
| TAGTCAACCTATGACATTGG+AGG | + | tig0012121:1132-1151 | Msa1351070:intron | 40.0% | |
| TATTTGGTCCCTTTCGTCAA+GGG | - | tig0012121:1163-1182 | None:intergenic | 40.0% | |
| TTATTTGGTCCCTTTCGTCA+AGG | - | tig0012121:1164-1183 | None:intergenic | 40.0% | |
| TGACGAAAGGGACCAAATAA+TGG | + | tig0012121:1164-1183 | Msa1351070:intron | 40.0% | |
| !! | GAATCTATCATTTGCTGTGC+CGG | + | tig0012121:1335-1354 | Msa1351070:intron | 40.0% |
| ATTCTTTCCATATGTGGCCT+TGG | + | tig0012121:1386-1405 | Msa1351070:intron | 40.0% | |
| TTCTTTCCATATGTGGCCTT+GGG | + | tig0012121:1387-1406 | Msa1351070:intron | 40.0% | |
| !! | TCACTAAAAAGTACCTCCCA+AGG | - | tig0012121:1406-1425 | None:intergenic | 40.0% |
| ! | AGAGAGCATAATATATGGGC+AGG | - | tig0012121:1941-1960 | None:intergenic | 40.0% |
| !! | CACTATATGGTCTTGTTGTG+TGG | + | tig0012121:2438-2457 | Msa1351070:intron | 40.0% |
| GGTTGTCTATCAAATAAGCC+AGG | + | tig0012121:2818-2837 | Msa1351070:CDS | 40.0% | |
| !! | AAGGAGGAGTTCTAAATGTG+TGG | - | tig0012121:2844-2863 | None:intergenic | 40.0% |
| TATGATCCAAATTGTCGACG+TGG | + | tig0012121:2884-2903 | Msa1351070:CDS | 40.0% | |
| GCTAAGGTTTCCACGTGAAT+AGG | - | tig0012121:226-245 | None:intergenic | 45.0% | |
| TTTCCAAATCTGACGATGGC+AGG | + | tig0012121:430-449 | Msa1351070:CDS | 45.0% | |
| TTCCAAATCTGACGATGGCA+GGG | + | tig0012121:431-450 | Msa1351070:CDS | 45.0% | |
| ACTTGTTCAGAAACTCCGGA+AGG | + | tig0012121:522-541 | Msa1351070:CDS | 45.0% | |
| AACTCCGGAAGGTTTGTATG+TGG | + | tig0012121:533-552 | Msa1351070:intron | 45.0% | |
| TGTGCCACATACAAACCTTC+CGG | - | tig0012121:540-559 | None:intergenic | 45.0% | |
| CCCTACGAATTTGTGTTTCC+CGG | - | tig0012121:670-689 | None:intergenic | 45.0% | |
| CCGGGAAACACAAATTCGTA+GGG | + | tig0012121:667-686 | Msa1351070:intron | 45.0% | |
| ACGAGTCATGTTGCATTTGG+AGG | + | tig0012121:693-712 | Msa1351070:intron | 45.0% | |
| CTTCGAAAACACCCTTTGTC+CGG | + | tig0012121:1019-1038 | Msa1351070:intron | 45.0% | |
| ACACCCTTTGTCCGGATTAT+TGG | + | tig0012121:1027-1046 | Msa1351070:intron | 45.0% | |
| ! | CCGGATTTTAAACTCCGGAA+TGG | + | tig0012121:1085-1104 | Msa1351070:intron | 45.0% |
| TGACTAACATTCCGGAGTTC+TGG | - | tig0012121:1118-1137 | None:intergenic | 45.0% | |
| GGGTTAACCTCCAATGTCAT+AGG | - | tig0012121:1142-1161 | None:intergenic | 45.0% | |
| AGGTTAACCCCTTGACGAAA+GGG | + | tig0012121:1152-1171 | Msa1351070:intron | 45.0% | |
| ATTTGGTCCCTTTCGTCAAG+GGG | - | tig0012121:1162-1181 | None:intergenic | 45.0% | |
| TAGCAGCATGTGTGATTGGT+AGG | + | tig0012121:1358-1377 | Msa1351070:intron | 45.0% | |
| !!! | GGTTTTGGCTCTTGAACTTG+TGG | + | tig0012121:1457-1476 | Msa1351070:intron | 45.0% |
| GCCGCCATTGAATAAAGAAC+AGG | - | tig0012121:1966-1985 | None:intergenic | 45.0% | |
| GAACAAGCATAAGAGCAGCA+AGG | - | tig0012121:2709-2728 | None:intergenic | 45.0% | |
| GCTCTTATGCTTGTTCCTCA+AGG | + | tig0012121:2713-2732 | Msa1351070:CDS | 45.0% | |
| AAGGAGGAGTTGTAACTTGG+GGG | - | tig0012121:2769-2788 | None:intergenic | 45.0% | |
| CAAGGAGGAGTTGTAACTTG+GGG | - | tig0012121:2770-2789 | None:intergenic | 45.0% | |
| GCAAGGAGGAGTTGTAACTT+GGG | - | tig0012121:2771-2790 | None:intergenic | 45.0% | |
| AACCATATGGCCTGTTGTTC+GGG | - | tig0012121:2793-2812 | None:intergenic | 45.0% | |
| GAACCATATGGCCTGTTGTT+CGG | - | tig0012121:2794-2813 | None:intergenic | 45.0% | |
| AGACAACCAGCTGAACCATA+TGG | - | tig0012121:2806-2825 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTATTTCTTAT+CGG | + | tig0012121:1570-1589 | Msa1351070:intron | 5.0% |
| !!! | GATATTAAATTATTTATTTT+TGG | - | tig0012121:2258-2277 | None:intergenic | 5.0% |
| TGCTTCTCGTCCTATTCACG+TGG | + | tig0012121:213-232 | Msa1351070:CDS | 50.0% | |
| GTGGAAACCTTAGCAATGCG+TGG | + | tig0012121:232-251 | Msa1351070:CDS | 50.0% | |
| TCCAAATCTGACGATGGCAG+GGG | + | tig0012121:432-451 | Msa1351070:CDS | 50.0% | |
| GCCGGGAAACACAAATTCGT+AGG | + | tig0012121:666-685 | Msa1351070:intron | 50.0% | |
| GAGGTTAACCCCTTGACGAA+AGG | + | tig0012121:1151-1170 | Msa1351070:intron | 50.0% | |
| CCAATCACACATGCTGCTAC+CGG | - | tig0012121:1357-1376 | None:intergenic | 50.0% | |
| ! | TTTCCATATGTGGCCTTGGG+AGG | + | tig0012121:1390-1409 | Msa1351070:intron | 50.0% |
| ! | TTGGCTCTTGAACTTGTGGC+TGG | + | tig0012121:1461-1480 | Msa1351070:intron | 50.0% |
| GGCAAGGAGGAGTTGTAACT+TGG | - | tig0012121:2772-2791 | None:intergenic | 50.0% | |
| AACAGGCCATATGGTTCAGC+TGG | + | tig0012121:2797-2816 | Msa1351070:CDS | 50.0% | |
| !! | GGAGTTCTAAATGTGTGGCC+TGG | - | tig0012121:2839-2858 | None:intergenic | 50.0% |
| GGATCATATACCCGGCTGTT+CGG | - | tig0012121:2872-2891 | None:intergenic | 50.0% | |
| TCCCCTGCCATCGTCAGATT+TGG | - | tig0012121:436-455 | None:intergenic | 55.0% | |
| ! | GGGCGCTGTAGAAATCCGAT+GGG | - | tig0012121:989-1008 | None:intergenic | 55.0% |
| !! | AGGGCGCTGTAGAAATCCGA+TGG | - | tig0012121:990-1009 | None:intergenic | 55.0% |
| CCGGTAGCAGCATGTGTGAT+TGG | + | tig0012121:1354-1373 | Msa1351070:intron | 55.0% | |
| GTACCTCCCAAGGCCACATA+TGG | - | tig0012121:1396-1415 | None:intergenic | 55.0% | |
| TATGGCCTGTTGTTCGGGCA+AGG | - | tig0012121:2788-2807 | None:intergenic | 55.0% | |
| TGCCCGAACAACAGGCCATA+TGG | + | tig0012121:2788-2807 | Msa1351070:CDS | 55.0% | |
| GGTGGACCACGTCGACAATT+TGG | - | tig0012121:2893-2912 | None:intergenic | 55.0% | |
| GGAGTTGTAACTTGGGGGCC+TGG | - | tig0012121:2764-2783 | None:intergenic | 60.0% | |
| CTCCTCCTTGCCCGAACAAC+AGG | + | tig0012121:2780-2799 | Msa1351070:CDS | 60.0% | |
| TCTGACGATGGCAGGGGACG+AGG | + | tig0012121:438-457 | Msa1351070:CDS | 65.0% | |
| CTGACGATGGCAGGGGACGA+GGG | + | tig0012121:439-458 | Msa1351070:CDS | 65.0% | |
| GGCCTGTTGTTCGGGCAAGG+AGG | - | tig0012121:2785-2804 | None:intergenic | 65.0% | |
| CTCCTTGCTCGCCGAACAGC+CGG | + | tig0012121:2858-2877 | Msa1351070:CDS | 65.0% | |
| TCCTTGCTCGCCGAACAGCC+GGG | + | tig0012121:2859-2878 | Msa1351070:CDS | 65.0% | |
| CGGCTGTTCGGCGAGCAAGG+AGG | - | tig0012121:2860-2879 | None:intergenic | 70.0% | |
| ACCCGGCTGTTCGGCGAGCA+AGG | - | tig0012121:2863-2882 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012121 | gene | 208 | 2922 | 208 | ID=Msa1351070;Name=Msa1351070 |
| tig0012121 | mRNA | 208 | 2922 | 208 | ID=Msa1351070-mRNA-1;Parent=Msa1351070;Name=Msa1351070-mRNA-1;_AED=0.46;_eAED=0.65;_QI=0|0|0|0.66|0.5|0.33|3|0|158 |
| tig0012121 | exon | 208 | 305 | 208 | ID=Msa1351070-mRNA-1:exon:7656;Parent=Msa1351070-mRNA-1 |
| tig0012121 | exon | 393 | 547 | 393 | ID=Msa1351070-mRNA-1:exon:7657;Parent=Msa1351070-mRNA-1 |
| tig0012121 | exon | 2699 | 2922 | 2699 | ID=Msa1351070-mRNA-1:exon:7658;Parent=Msa1351070-mRNA-1 |
| tig0012121 | CDS | 208 | 305 | 208 | ID=Msa1351070-mRNA-1:cds;Parent=Msa1351070-mRNA-1 |
| tig0012121 | CDS | 393 | 547 | 393 | ID=Msa1351070-mRNA-1:cds;Parent=Msa1351070-mRNA-1 |
| tig0012121 | CDS | 2699 | 2922 | 2699 | ID=Msa1351070-mRNA-1:cds;Parent=Msa1351070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
