Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593420 | XP_013457385.1 | 95.833 | 480 | 20 | 0 | 1 | 480 | 1 | 480 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593420 | sp|O49432|QRT3_ARATH | 46.721 | 488 | 224 | 8 | 8 | 480 | 13 | 479 | 7.81e-140 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0561960 | Msa0593420 | 0.840927 | 6.473292e-58 | -8.615850e-47 |
| Msa0593420 | Msa0655290 | 0.957662 | 1.579160e-115 | -8.615850e-47 |
| Msa0593420 | Msa0699060 | 0.858246 | 9.400293e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593420 | MtrunA17_Chr4g0052711 | 95.833 | 480 | 20 | 0 | 1 | 480 | 1 | 480 | 0.0 | 919 |
| Msa0593420 | MtrunA17_Chr2g0297001 | 66.463 | 492 | 149 | 6 | 1 | 480 | 4 | 491 | 0.0 | 609 |
| Msa0593420 | MtrunA17_Chr2g0296981 | 48.551 | 414 | 194 | 6 | 60 | 468 | 82 | 481 | 5.11e-136 | 401 |
| Msa0593420 | MtrunA17_Chr6g0455291 | 49.403 | 419 | 186 | 7 | 67 | 480 | 93 | 490 | 7.67e-129 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593420 | AT4G20040.1 | 59.598 | 448 | 165 | 5 | 37 | 474 | 36 | 477 | 0.0 | 535 |
| Msa0593420 | AT4G20050.7 | 46.721 | 488 | 224 | 8 | 8 | 480 | 13 | 479 | 7.94e-141 | 413 |
| Msa0593420 | AT4G20050.6 | 46.721 | 488 | 224 | 8 | 8 | 480 | 13 | 479 | 7.94e-141 | 413 |
| Msa0593420 | AT4G20050.2 | 46.721 | 488 | 224 | 8 | 8 | 480 | 13 | 479 | 7.94e-141 | 413 |
| Msa0593420 | AT4G20050.1 | 46.721 | 488 | 224 | 8 | 8 | 480 | 13 | 479 | 7.94e-141 | 413 |
| Msa0593420 | AT4G20050.5 | 46.721 | 488 | 224 | 8 | 8 | 480 | 38 | 504 | 1.30e-140 | 414 |
| Msa0593420 | AT4G20050.4 | 50.498 | 402 | 172 | 5 | 85 | 480 | 1 | 381 | 1.76e-129 | 381 |
| Msa0593420 | AT4G20050.3 | 50.498 | 402 | 172 | 5 | 85 | 480 | 1 | 381 | 1.76e-129 | 381 |
Find 115 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATGTGCTACAAATTT+TGG | 0.146774 | 4_2:+19619821 | None:intergenic |
| ACAATTGGAACCTTCTTATT+AGG | 0.182192 | 4_2:+19620043 | None:intergenic |
| GGCTGTTAAAGGTCAAATTT+TGG | 0.195856 | 4_2:-19620101 | Msa0593420:CDS |
| ACTATGAAGACGTAACTTTC+AGG | 0.234037 | 4_2:-19620615 | Msa0593420:CDS |
| TGGCTCCCCTTGAGCATAAA+AGG | 0.234400 | 4_2:+19619841 | None:intergenic |
| GTCACTAATTGTCTATTTCT+TGG | 0.242965 | 4_2:-19620145 | Msa0593420:CDS |
| TAGAATTGACAACTGTTATA+TGG | 0.260121 | 4_2:-19620209 | Msa0593420:CDS |
| GGTAGCAGGGGTGAATGATT+TGG | 0.285877 | 4_2:-19621616 | Msa0593420:CDS |
| ATGTGCATTATTAGAGTAAC+AGG | 0.287505 | 4_2:-19621749 | Msa0593420:intron |
| TCACTAATTGTCTATTTCTT+GGG | 0.292562 | 4_2:-19620144 | Msa0593420:CDS |
| CCACCTGGGAGTAAAGTAAT+TGG | 0.305752 | 4_2:+19621546 | None:intergenic |
| CATGGTGAGAAGGACTATTC+TGG | 0.314832 | 4_2:-19620412 | Msa0593420:CDS |
| GTAGCAGGGGTGAATGATTT+GGG | 0.315095 | 4_2:-19621615 | Msa0593420:CDS |
| GGTCAAGCTAACATTCTATC+AGG | 0.316674 | 4_2:-19620307 | Msa0593420:CDS |
| TATAGGTATCTTAGTGAAAT+TGG | 0.326605 | 4_2:-19620248 | Msa0593420:CDS |
| AGTATGACTGAATAGGTAAA+AGG | 0.339747 | 4_2:-19620781 | Msa0593420:intron |
| ATCCTCCACTGCTTTCAAAA+TGG | 0.349501 | 4_2:+19621668 | None:intergenic |
| TGAGTGGTAATGGCACAAAA+TGG | 0.354252 | 4_2:-19619922 | Msa0593420:CDS |
| TTTCACCACAGAAGGTATTC+TGG | 0.360872 | 4_2:-19620503 | Msa0593420:CDS |
| GTATTGTACCCGAGTGAATA+TGG | 0.364196 | 4_2:-19621726 | Msa0593420:CDS |
| TTAGTGACATGAACTTGAAC+AGG | 0.390498 | 4_2:+19620160 | None:intergenic |
| GCAGCAGGATTCGGTGGTAT+AGG | 0.397151 | 4_2:-19620265 | Msa0593420:CDS |
| GAATTTATATAGTTTATCAT+TGG | 0.398984 | 4_2:+19619484 | None:intergenic |
| GTTGCAAAAGGGTCTTGAAT+TGG | 0.413949 | 4_2:-19621637 | Msa0593420:CDS |
| CGAACATGACTAATCCGATT+AGG | 0.413954 | 4_2:+19619869 | None:intergenic |
| AACTGTTATATGGATTATAC+TGG | 0.421131 | 4_2:-19620199 | Msa0593420:CDS |
| TGACCATCTAGATTTACAAT+TGG | 0.425857 | 4_2:+19620028 | None:intergenic |
| GCAACAATTAGCTAGTCCTT+TGG | 0.445926 | 4_2:-19621869 | Msa0593420:CDS |
| CAACTTTATTAGCTTTATGT+AGG | 0.446918 | 4_2:-19619574 | Msa0593420:three_prime_UTR |
| GGATGCATTTAAGTTGCAAA+AGG | 0.447345 | 4_2:-19621649 | Msa0593420:CDS |
| TACTCTCTTCTGATCCAGTT+GGG | 0.449730 | 4_2:+19621697 | None:intergenic |
| TATAACAAAGCAGCAGGATT+CGG | 0.458956 | 4_2:-19620274 | Msa0593420:CDS |
| CTATGAAGACGTAACTTTCA+GGG | 0.468257 | 4_2:-19620614 | Msa0593420:CDS |
| TGAGAAAGAAGCTAAAGGTT+TGG | 0.469132 | 4_2:-19619762 | Msa0593420:CDS |
| TACCTTCTGTGGTGAAATGC+AGG | 0.474883 | 4_2:+19620509 | None:intergenic |
| GTTCCAATTGTAAATCTAGA+TGG | 0.476983 | 4_2:-19620031 | Msa0593420:CDS |
| ATCTTTGTTTGTGAAGAAGC+AGG | 0.484850 | 4_2:+19621838 | None:intergenic |
| CACTAATTGTCTATTTCTTG+GGG | 0.486959 | 4_2:-19620143 | Msa0593420:CDS |
| AAGGGTCTTGAATTGGTAGC+AGG | 0.488945 | 4_2:-19621630 | Msa0593420:CDS |
| GAATATGGTGCAGACCCAAC+TGG | 0.490541 | 4_2:-19621711 | Msa0593420:CDS |
| CTTGGACAACACTCAACAGT+TGG | 0.494542 | 4_2:-19620442 | Msa0593420:CDS |
| ATGGTGAGAAGGACTATTCT+GGG | 0.497205 | 4_2:-19620411 | Msa0593420:CDS |
| GGTGTTATTATTGATTTGCA+AGG | 0.498421 | 4_2:-19621591 | Msa0593420:CDS |
| AAGTTAACTGTGAGTGGTAA+TGG | 0.500694 | 4_2:-19619932 | Msa0593420:CDS |
| CTCACCACAATATTGCCACC+TGG | 0.514248 | 4_2:+19621531 | None:intergenic |
| CATTGTTATAACAAAGCAGC+AGG | 0.517528 | 4_2:-19620280 | Msa0593420:CDS |
| TCGTTGATTCCGCTAGAACT+CGG | 0.522480 | 4_2:-19620549 | Msa0593420:CDS |
| CTACTCTCTTCTGATCCAGT+TGG | 0.522673 | 4_2:+19621696 | None:intergenic |
| TAGAAACAATGTGAATGGTA+TGG | 0.524399 | 4_2:-19619975 | Msa0593420:CDS |
| GCCACTGGTATTGTGCTAAG+AGG | 0.526724 | 4_2:-19620328 | Msa0593420:CDS |
| GTTATTATTGATTTGCAAGG+TGG | 0.531694 | 4_2:-19621588 | Msa0593420:CDS |
| TTCCTGCATTTCACCACAGA+AGG | 0.538916 | 4_2:-19620511 | Msa0593420:CDS |
| GGTATCTTAGTGAAATTGGC+AGG | 0.545694 | 4_2:-19620244 | Msa0593420:CDS |
| AACAATAAGAAAGAAGCAAG+GGG | 0.545806 | 4_2:-19619724 | Msa0593420:exon |
| TCAACTAGATGTCGGTCACC+AGG | 0.548294 | 4_2:+19620730 | None:intergenic |
| ATTTAGTAATGTTGATCAAG+TGG | 0.550162 | 4_2:-19620005 | Msa0593420:CDS |
| AGAACAAAATGAGTGTATGA+TGG | 0.550795 | 4_2:+19622055 | None:intergenic |
| TGCTTCTTCACAAACAAAGA+TGG | 0.551117 | 4_2:-19621836 | Msa0593420:intron |
| AAAAGTATCAGATGCTCTCA+AGG | 0.551314 | 4_2:+19620753 | None:intergenic |
| CAGTGGTGATCCTAATAAGA+AGG | 0.551347 | 4_2:-19620053 | Msa0593420:CDS |
| ACTCCCAGGTGGCAATATTG+TGG | 0.555045 | 4_2:-19621535 | Msa0593420:intron |
| GATGCATTTAAGTTGCAAAA+GGG | 0.555247 | 4_2:-19621648 | Msa0593420:CDS |
| GTCAAGCTAACATTCTATCA+GGG | 0.557104 | 4_2:-19620306 | Msa0593420:CDS |
| GAGAGTGAGAAAGAAGCTAA+AGG | 0.558237 | 4_2:-19619767 | Msa0593420:CDS |
| CTCTGTAGTTTGAATCGAAG+AGG | 0.559415 | 4_2:+19620587 | None:intergenic |
| ATTGATAGAAACAATGTGAA+TGG | 0.559517 | 4_2:-19619980 | Msa0593420:CDS |
| GGAATTTATGCACAAAACAA+TGG | 0.561541 | 4_2:-19620643 | Msa0593420:CDS |
| ATGGGCTTGAGATCAACAGC+TGG | 0.563909 | 4_2:-19619956 | Msa0593420:CDS |
| GTCTGATAATGTTGTAGTTG+TGG | 0.571268 | 4_2:-19619789 | Msa0593420:CDS |
| GATTCAAACTACAGAGGAGG+AGG | 0.575299 | 4_2:-19620580 | Msa0593420:CDS |
| GAACAATAAGAAAGAAGCAA+GGG | 0.576277 | 4_2:-19619725 | Msa0593420:exon |
| AGAAACAATGTGAATGGTAT+GGG | 0.578616 | 4_2:-19619974 | Msa0593420:CDS |
| AAACCAATTACTTTACTCCC+AGG | 0.579529 | 4_2:-19621549 | Msa0593420:CDS |
| GGACAACACTCAACAGTTGG+TGG | 0.579683 | 4_2:-19620439 | Msa0593420:CDS |
| TGTAAGTCAAGTCATCAAGT+AGG | 0.579799 | 4_2:+19619457 | None:intergenic |
| GGGTCTGCACCATATTCACT+CGG | 0.588618 | 4_2:+19621717 | None:intergenic |
| AGGGTCTTGAATTGGTAGCA+GGG | 0.590919 | 4_2:-19621629 | Msa0593420:CDS |
| GTTGTTGATCCGAGTTCTAG+CGG | 0.596944 | 4_2:+19620540 | None:intergenic |
| GAGTGGTAATGGCACAAAAT+GGG | 0.598153 | 4_2:-19619921 | Msa0593420:CDS |
| TACAACATTATCAGACACAT+TGG | 0.601963 | 4_2:+19619796 | None:intergenic |
| ATGCAAGGTGGTAACTTCAG+TGG | 0.602840 | 4_2:-19620664 | Msa0593420:CDS |
| AACAAAGCAGCAGGATTCGG+TGG | 0.608346 | 4_2:-19620271 | Msa0593420:CDS |
| CGACAATGCAGTCACTGATG+TGG | 0.611847 | 4_2:-19620365 | Msa0593420:CDS |
| TCACCACAATATTGCCACCT+GGG | 0.614937 | 4_2:+19621532 | None:intergenic |
| TTCGATTCAAACTACAGAGG+AGG | 0.620178 | 4_2:-19620583 | Msa0593420:CDS |
| GGATTATACTGGTATAGTAA+CGG | 0.620931 | 4_2:-19620188 | Msa0593420:CDS |
| GCTGGGAAGTTAACTGTGAG+TGG | 0.626842 | 4_2:-19619938 | Msa0593420:CDS |
| GGGTCTTGAATTGGTAGCAG+GGG | 0.627530 | 4_2:-19621628 | Msa0593420:CDS |
| GAAGCAGGTGGTGATGCCAA+AGG | 0.632343 | 4_2:+19621853 | None:intergenic |
| CTGTACCAGAATACCTTCTG+TGG | 0.634222 | 4_2:+19620498 | None:intergenic |
| TGGTGGTGACCATGGTGAGA+AGG | 0.638340 | 4_2:-19620422 | Msa0593420:CDS |
| TGGGCTTGAGATCAACAGCT+GGG | 0.640163 | 4_2:-19619955 | Msa0593420:CDS |
| TCAACAGTTGGTGGTGACCA+TGG | 0.642439 | 4_2:-19620430 | Msa0593420:CDS |
| ACCGACATCTAGTTGAGATG+TGG | 0.645741 | 4_2:-19620723 | Msa0593420:CDS |
| TGAACAATAAGAAAGAAGCA+AGG | 0.648792 | 4_2:-19619726 | Msa0593420:exon |
| ATGACTGAATAGGTAAAAGG+AGG | 0.649788 | 4_2:-19620778 | Msa0593420:intron |
| CAGACAAAAGAATATATGCA+AGG | 0.649813 | 4_2:-19620679 | Msa0593420:CDS |
| ACCTCTTAGCACAATACCAG+TGG | 0.650646 | 4_2:+19620327 | None:intergenic |
| ACCACATCTCAACTAGATGT+CGG | 0.651311 | 4_2:+19620722 | None:intergenic |
| ATAGTGGATAATATGTTCAG+TGG | 0.656109 | 4_2:-19620070 | Msa0593420:CDS |
| TCAAGCTAACATTCTATCAG+GGG | 0.670436 | 4_2:-19620305 | Msa0593420:CDS |
| GGTCTGCACCATATTCACTC+GGG | 0.672480 | 4_2:+19621718 | None:intergenic |
| CAGAATAGTCCTTCTCACCA+TGG | 0.673192 | 4_2:+19620413 | None:intergenic |
| GATTGAAGGACTTGAAGTGA+AGG | 0.677077 | 4_2:+19622111 | None:intergenic |
| CCAATTACTTTACTCCCAGG+TGG | 0.681627 | 4_2:-19621546 | Msa0593420:CDS |
| GAAGGTATTCTGGTACAGCA+AGG | 0.682518 | 4_2:-19620493 | Msa0593420:CDS |
| GCAGGGGTGAATGATTTGGG+AGG | 0.682565 | 4_2:-19621612 | Msa0593420:CDS |
| ACAAAAGAATATATGCAAGG+TGG | 0.687781 | 4_2:-19620676 | Msa0593420:CDS |
| CTCTTCGATTCAAACTACAG+AGG | 0.692930 | 4_2:-19620586 | Msa0593420:CDS |
| TGGTGAGAAGGACTATTCTG+GGG | 0.710714 | 4_2:-19620410 | Msa0593420:CDS |
| TAGTGACATGAACTTGAACA+GGG | 0.715958 | 4_2:+19620161 | None:intergenic |
| TTTGTTTGTGAAGAAGCAGG+TGG | 0.716731 | 4_2:+19621841 | None:intergenic |
| TGTGCATTATTAGAGTAACA+GGG | 0.739578 | 4_2:-19621748 | Msa0593420:intron |
| ACAATAAGAAAGAAGCAAGG+GGG | 0.749795 | 4_2:-19619723 | Msa0593420:exon |
| TTAAAGTATGAAATTCTCAG+TGG | 0.757215 | 4_2:-19621992 | Msa0593420:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAAAAAGATATGA+GGG | + | chr4_2:19620250-19620269 | None:intergenic | 10.0% |
| !!! | ATATTGAAACAGATTTTTAA+TGG | + | chr4_2:19619546-19619565 | None:intergenic | 15.0% |
| !!! | TATTTCATTTAAGATTTGAT+TGG | + | chr4_2:19620180-19620199 | None:intergenic | 15.0% |
| !! | ATCAAATCTTAAATGAAATA+TGG | - | chr4_2:19620180-19620199 | Msa0593420:CDS | 15.0% |
| !! | TTATATTAAAAAGATATGAG+GGG | + | chr4_2:19620249-19620268 | None:intergenic | 15.0% |
| !! | CTTTATATTAAAAAGATATG+AGG | + | chr4_2:19620251-19620270 | None:intergenic | 15.0% |
| !! | GAATTTATATAGTTTATCAT+TGG | + | chr4_2:19622087-19622106 | None:intergenic | 15.0% |
| !!! | GGTGTATTTTGTTTTATTAT+TGG | - | chr4_2:19619597-19619616 | Msa0593420:three_prime_UTR | 20.0% |
| !! | CATTGTACATTGTTAAAAAT+CGG | + | chr4_2:19619802-19619821 | None:intergenic | 20.0% |
| !! | TAACAATTCAATTATGTTAG+TGG | - | chr4_2:19620132-19620151 | Msa0593420:CDS | 20.0% |
| !!! | TTTCTGAAAAAACAGTAAAA+TGG | + | chr4_2:19620393-19620412 | None:intergenic | 20.0% |
| !! | TAAATGCAGTAAAAAACATT+TGG | - | chr4_2:19620647-19620666 | Msa0593420:CDS | 20.0% |
| !!! | GGATGCTAATATTTTAATAA+AGG | - | chr4_2:19621446-19621465 | Msa0593420:intron | 20.0% |
| !!! | ATTTTAATAAAGGCTGTTAA+AGG | - | chr4_2:19621456-19621475 | Msa0593420:intron | 20.0% |
| !!! | ATCTTTTTTATCTGGATTGA+AGG | + | chr4_2:19619474-19619493 | None:intergenic | 25.0% |
| !!! | ACAACTGTATCTTTTTTATC+TGG | + | chr4_2:19619482-19619501 | None:intergenic | 25.0% |
| ! | TTAAAGTATGAAATTCTCAG+TGG | - | chr4_2:19619576-19619595 | Msa0593420:three_prime_UTR | 25.0% |
| ! | TCTTAAATGAAATATGGTTG+AGG | - | chr4_2:19620186-19620205 | Msa0593420:CDS | 25.0% |
| !!! | CTGGTTTTGAATTTTATCAT+AGG | + | chr4_2:19620277-19620296 | None:intergenic | 25.0% |
| !! | ATTTTATTGCCGACAATTAT+TGG | - | chr4_2:19620321-19620340 | Msa0593420:CDS | 25.0% |
| !! | GTTCATATGAGTATTCTTTT+AGG | - | chr4_2:19620509-19620528 | Msa0593420:CDS | 25.0% |
| ! | TAGGATTCTTCCAATAAATT+TGG | - | chr4_2:19620595-19620614 | Msa0593420:CDS | 25.0% |
| !! | CATTTAGTTCAATTATCCTT+TGG | + | chr4_2:19620633-19620652 | None:intergenic | 25.0% |
| ! | TAGAAAACTAACTAGTAACT+TGG | + | chr4_2:19620678-19620697 | None:intergenic | 25.0% |
| !!! | AGATGAACTAACTTGTTTAT+GGG | + | chr4_2:19620731-19620750 | None:intergenic | 25.0% |
| !!! | AAGATGAACTAACTTGTTTA+TGG | + | chr4_2:19620732-19620751 | None:intergenic | 25.0% |
| !!! | TTCATATCAAGTTGTTTTCT+TGG | - | chr4_2:19621108-19621127 | Msa0593420:intron | 25.0% |
| ! | TATAGGTATCTTAGTGAAAT+TGG | - | chr4_2:19621320-19621339 | Msa0593420:intron | 25.0% |
| ! | TAGAATTGACAACTGTTATA+TGG | - | chr4_2:19621359-19621378 | Msa0593420:intron | 25.0% |
| !! | AACTGTTATATGGATTATAC+TGG | - | chr4_2:19621369-19621388 | Msa0593420:intron | 25.0% |
| !! | TCACTAATTGTCTATTTCTT+GGG | - | chr4_2:19621424-19621443 | Msa0593420:intron | 25.0% |
| ! | ATTTAGTAATGTTGATCAAG+TGG | - | chr4_2:19621563-19621582 | Msa0593420:CDS | 25.0% |
| ! | ATTGATAGAAACAATGTGAA+TGG | - | chr4_2:19621588-19621607 | Msa0593420:CDS | 25.0% |
| !!! | CAACTTTATTAGCTTTATGT+AGG | - | chr4_2:19621994-19622013 | Msa0593420:exon | 25.0% |
| !!! | TTTTTTTGTGATTACAGGTT+CGG | + | chr4_2:19622031-19622050 | None:intergenic | 25.0% |
| !!! | AGCTTTTTTTTTGTGATTAC+AGG | + | chr4_2:19622036-19622055 | None:intergenic | 25.0% |
| AGAACAAAATGAGTGTATGA+TGG | + | chr4_2:19619516-19619535 | None:intergenic | 30.0% | |
| ATGTGCATTATTAGAGTAAC+AGG | - | chr4_2:19619819-19619838 | Msa0593420:CDS | 30.0% | |
| TGTGCATTATTAGAGTAACA+GGG | - | chr4_2:19619820-19619839 | Msa0593420:CDS | 30.0% | |
| !! | GATGCATTTAAGTTGCAAAA+GGG | - | chr4_2:19619920-19619939 | Msa0593420:CDS | 30.0% |
| !! | GGTGTTATTATTGATTTGCA+AGG | - | chr4_2:19619977-19619996 | Msa0593420:CDS | 30.0% |
| !! | GTTATTATTGATTTGCAAGG+TGG | - | chr4_2:19619980-19619999 | Msa0593420:CDS | 30.0% |
| TCCACATGCTACAAAATAAA+TGG | + | chr4_2:19620081-19620100 | None:intergenic | 30.0% | |
| !!! | ATCGTTTTAAGTTAGTTTGC+TGG | + | chr4_2:19620296-19620315 | None:intergenic | 30.0% |
| AGAAGAAGAAAAATGTACTC+AGG | + | chr4_2:19620370-19620389 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTTCAGAAAACACA+AGG | - | chr4_2:19620398-19620417 | Msa0593420:CDS | 30.0% |
| !!! | TTTTTTCAGAAAACACAAGG+TGG | - | chr4_2:19620401-19620420 | Msa0593420:CDS | 30.0% |
| GTGTTAAGTGCCAAATTTAT+TGG | + | chr4_2:19620608-19620627 | None:intergenic | 30.0% | |
| ATGCAGTAAAAAACATTTGG+AGG | - | chr4_2:19620650-19620669 | Msa0593420:CDS | 30.0% | |
| ! | TATGAGAAGTATGACTGAAT+AGG | - | chr4_2:19620780-19620799 | Msa0593420:intron | 30.0% |
| AGTATGACTGAATAGGTAAA+AGG | - | chr4_2:19620787-19620806 | Msa0593420:intron | 30.0% | |
| !! | TTCTTTTGTCTGAAGTTTCT+TGG | + | chr4_2:19620881-19620900 | None:intergenic | 30.0% |
| CAGACAAAAGAATATATGCA+AGG | - | chr4_2:19620889-19620908 | Msa0593420:intron | 30.0% | |
| ACAAAAGAATATATGCAAGG+TGG | - | chr4_2:19620892-19620911 | Msa0593420:intron | 30.0% | |
| GGAATTTATGCACAAAACAA+TGG | - | chr4_2:19620925-19620944 | Msa0593420:intron | 30.0% | |
| GGATTATACTGGTATAGTAA+CGG | - | chr4_2:19621380-19621399 | Msa0593420:intron | 30.0% | |
| ! | GTCACTAATTGTCTATTTCT+TGG | - | chr4_2:19621423-19621442 | Msa0593420:intron | 30.0% |
| ! | CACTAATTGTCTATTTCTTG+GGG | - | chr4_2:19621425-19621444 | Msa0593420:intron | 30.0% |
| ! | GCTGTTAAAGGTCAAATTTT+GGG | - | chr4_2:19621468-19621487 | Msa0593420:intron | 30.0% |
| !!! | AATTTTGGGTTTGAACATAG+TGG | - | chr4_2:19621482-19621501 | Msa0593420:intron | 30.0% |
| !! | ATAGTGGATAATATGTTCAG+TGG | - | chr4_2:19621498-19621517 | Msa0593420:intron | 30.0% |
| ACAATTGGAACCTTCTTATT+AGG | + | chr4_2:19621528-19621547 | None:intergenic | 30.0% | |
| GTTCCAATTGTAAATCTAGA+TGG | - | chr4_2:19621537-19621556 | Msa0593420:CDS | 30.0% | |
| TGACCATCTAGATTTACAAT+TGG | + | chr4_2:19621543-19621562 | None:intergenic | 30.0% | |
| TAGAAACAATGTGAATGGTA+TGG | - | chr4_2:19621593-19621612 | Msa0593420:CDS | 30.0% | |
| AGAAACAATGTGAATGGTAT+GGG | - | chr4_2:19621594-19621613 | Msa0593420:CDS | 30.0% | |
| !! | AGCTGATTTTTCATCAGTTT+TGG | - | chr4_2:19621671-19621690 | Msa0593420:CDS | 30.0% |
| !! | CAGTTTTGGTATTTCCTAAT+CGG | - | chr4_2:19621685-19621704 | Msa0593420:CDS | 30.0% |
| ! | GATATTCCTTTTATGCTCAA+GGG | - | chr4_2:19621721-19621740 | Msa0593420:CDS | 30.0% |
| ! | ATATTCCTTTTATGCTCAAG+GGG | - | chr4_2:19621722-19621741 | Msa0593420:CDS | 30.0% |
| ! | ACAGAATGTGCTACAAATTT+TGG | + | chr4_2:19621750-19621769 | None:intergenic | 30.0% |
| TACAACATTATCAGACACAT+TGG | + | chr4_2:19621775-19621794 | None:intergenic | 30.0% | |
| TGAACAATAAGAAAGAAGCA+AGG | - | chr4_2:19621842-19621861 | Msa0593420:CDS | 30.0% | |
| GAACAATAAGAAAGAAGCAA+GGG | - | chr4_2:19621843-19621862 | Msa0593420:CDS | 30.0% | |
| AACAATAAGAAAGAAGCAAG+GGG | - | chr4_2:19621844-19621863 | Msa0593420:CDS | 30.0% | |
| ! | TTCTGATAGCTTTTGTTCTC+TGG | + | chr4_2:19619662-19619681 | None:intergenic | 35.0% |
| ! | ATCTTTGTTTGTGAAGAAGC+AGG | + | chr4_2:19619733-19619752 | None:intergenic | 35.0% |
| TGCTTCTTCACAAACAAAGA+TGG | - | chr4_2:19619732-19619751 | Msa0593420:exon | 35.0% | |
| !! | GGATGCATTTAAGTTGCAAA+AGG | - | chr4_2:19619919-19619938 | Msa0593420:CDS | 35.0% |
| AAACCAATTACTTTACTCCC+AGG | - | chr4_2:19620019-19620038 | Msa0593420:CDS | 35.0% | |
| !!! | GCCATTTATTTTGTAGCATG+TGG | - | chr4_2:19620077-19620096 | Msa0593420:CDS | 35.0% |
| AGTCTTGGACCAATAATTGT+CGG | + | chr4_2:19620333-19620352 | None:intergenic | 35.0% | |
| CAAAATATGTGCTTTCAGAC+AGG | - | chr4_2:19620532-19620551 | Msa0593420:CDS | 35.0% | |
| AATCAAGAGCAAGATTCGTT+AGG | - | chr4_2:19620576-19620595 | Msa0593420:CDS | 35.0% | |
| !! | TGAACTAACTTGTTTATGGG+TGG | + | chr4_2:19620728-19620747 | None:intergenic | 35.0% |
| ATGACTGAATAGGTAAAAGG+AGG | - | chr4_2:19620790-19620809 | Msa0593420:intron | 35.0% | |
| !! | AAAAGTATCAGATGCTCTCA+AGG | + | chr4_2:19620818-19620837 | None:intergenic | 35.0% |
| ACTATGAAGACGTAACTTTC+AGG | - | chr4_2:19620953-19620972 | Msa0593420:intron | 35.0% | |
| CTATGAAGACGTAACTTTCA+GGG | - | chr4_2:19620954-19620973 | Msa0593420:intron | 35.0% | |
| GTCAAGCTAACATTCTATCA+GGG | - | chr4_2:19621262-19621281 | Msa0593420:intron | 35.0% | |
| TCAAGCTAACATTCTATCAG+GGG | - | chr4_2:19621263-19621282 | Msa0593420:intron | 35.0% | |
| CATTGTTATAACAAAGCAGC+AGG | - | chr4_2:19621288-19621307 | Msa0593420:intron | 35.0% | |
| TATAACAAAGCAGCAGGATT+CGG | - | chr4_2:19621294-19621313 | Msa0593420:intron | 35.0% | |
| TAGTGACATGAACTTGAACA+GGG | + | chr4_2:19621410-19621429 | None:intergenic | 35.0% | |
| TTAGTGACATGAACTTGAAC+AGG | + | chr4_2:19621411-19621430 | None:intergenic | 35.0% | |
| ! | GGCTGTTAAAGGTCAAATTT+TGG | - | chr4_2:19621467-19621486 | Msa0593420:intron | 35.0% |
| AAGTTAACTGTGAGTGGTAA+TGG | - | chr4_2:19621636-19621655 | Msa0593420:CDS | 35.0% | |
| ! | CGATATTCCTTTTATGCTCA+AGG | - | chr4_2:19621720-19621739 | Msa0593420:CDS | 35.0% |
| ! | GTCTGATAATGTTGTAGTTG+TGG | - | chr4_2:19621779-19621798 | Msa0593420:intron | 35.0% |
| TGAGAAAGAAGCTAAAGGTT+TGG | - | chr4_2:19621806-19621825 | Msa0593420:intron | 35.0% | |
| ACAATAAGAAAGAAGCAAGG+GGG | - | chr4_2:19621845-19621864 | Msa0593420:CDS | 35.0% | |
| GCAACAATTAGCTAGTCCTT+TGG | - | chr4_2:19619699-19619718 | Msa0593420:three_prime_UTR | 40.0% | |
| TTTGTTTGTGAAGAAGCAGG+TGG | + | chr4_2:19619730-19619749 | None:intergenic | 40.0% | |
| GTATTGTACCCGAGTGAATA+TGG | - | chr4_2:19619842-19619861 | Msa0593420:CDS | 40.0% | |
| TACTCTCTTCTGATCCAGTT+GGG | + | chr4_2:19619874-19619893 | None:intergenic | 40.0% | |
| !!! | TGATGCCATTTTGAAAGCAG+TGG | - | chr4_2:19619895-19619914 | Msa0593420:CDS | 40.0% |
| ATCCTCCACTGCTTTCAAAA+TGG | + | chr4_2:19619903-19619922 | None:intergenic | 40.0% | |
| GTTGCAAAAGGGTCTTGAAT+TGG | - | chr4_2:19619931-19619950 | Msa0593420:CDS | 40.0% | |
| AATTATTGGTCCAAGACTCC+AGG | - | chr4_2:19620335-19620354 | Msa0593420:CDS | 40.0% | |
| AAACAGACAAACACGTGTCA+TGG | + | chr4_2:19620467-19620486 | None:intergenic | 40.0% | |
| !! | AGAGCATCTGATACTTTTCC+TGG | - | chr4_2:19620820-19620839 | Msa0593420:intron | 40.0% |
| ACCACATCTCAACTAGATGT+CGG | + | chr4_2:19620849-19620868 | None:intergenic | 40.0% | |
| CTCTGTAGTTTGAATCGAAG+AGG | + | chr4_2:19620984-19621003 | None:intergenic | 40.0% | |
| CTCTTCGATTCAAACTACAG+AGG | - | chr4_2:19620982-19621001 | Msa0593420:intron | 40.0% | |
| TTCGATTCAAACTACAGAGG+AGG | - | chr4_2:19620985-19621004 | Msa0593420:intron | 40.0% | |
| !! | TTTCACCACAGAAGGTATTC+TGG | - | chr4_2:19621065-19621084 | Msa0593420:intron | 40.0% |
| ATGGTGAGAAGGACTATTCT+GGG | - | chr4_2:19621157-19621176 | Msa0593420:intron | 40.0% | |
| GGTCAAGCTAACATTCTATC+AGG | - | chr4_2:19621261-19621280 | Msa0593420:intron | 40.0% | |
| GGTATCTTAGTGAAATTGGC+AGG | - | chr4_2:19621324-19621343 | Msa0593420:intron | 40.0% | |
| CAGTGGTGATCCTAATAAGA+AGG | - | chr4_2:19621515-19621534 | Msa0593420:intron | 40.0% | |
| !! | TGAGTGGTAATGGCACAAAA+TGG | - | chr4_2:19621646-19621665 | Msa0593420:CDS | 40.0% |
| !! | GAGTGGTAATGGCACAAAAT+GGG | - | chr4_2:19621647-19621666 | Msa0593420:CDS | 40.0% |
| CGAACATGACTAATCCGATT+AGG | + | chr4_2:19621702-19621721 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAAGCTAA+AGG | - | chr4_2:19621801-19621820 | Msa0593420:intron | 40.0% | |
| CTACTCTCTTCTGATCCAGT+TGG | + | chr4_2:19619875-19619894 | None:intergenic | 45.0% | |
| !!! | TGCCATTTTGAAAGCAGTGG+AGG | - | chr4_2:19619898-19619917 | Msa0593420:CDS | 45.0% |
| ! | AAGGGTCTTGAATTGGTAGC+AGG | - | chr4_2:19619938-19619957 | Msa0593420:CDS | 45.0% |
| ! | AGGGTCTTGAATTGGTAGCA+GGG | - | chr4_2:19619939-19619958 | Msa0593420:CDS | 45.0% |
| GTAGCAGGGGTGAATGATTT+GGG | - | chr4_2:19619953-19619972 | Msa0593420:CDS | 45.0% | |
| CCACCTGGGAGTAAAGTAAT+TGG | + | chr4_2:19620025-19620044 | None:intergenic | 45.0% | |
| CCAATTACTTTACTCCCAGG+TGG | - | chr4_2:19620022-19620041 | Msa0593420:CDS | 45.0% | |
| TCACCACAATATTGCCACCT+GGG | + | chr4_2:19620039-19620058 | None:intergenic | 45.0% | |
| GTTTCTAACACCTGGAGTCT+TGG | + | chr4_2:19620348-19620367 | None:intergenic | 45.0% | |
| GTACTCAGGTTTCTAACACC+TGG | + | chr4_2:19620356-19620375 | None:intergenic | 45.0% | |
| ! | CACAAGGTGGTGTCCTTTTT+AGG | - | chr4_2:19620414-19620433 | Msa0593420:CDS | 45.0% |
| CGTGTAAGCCTAGCCTAAAA+AGG | + | chr4_2:19620430-19620449 | None:intergenic | 45.0% | |
| TTGGCACTTAACACTGCCAA+AGG | - | chr4_2:19620614-19620633 | Msa0593420:CDS | 45.0% | |
| ACCGACATCTAGTTGAGATG+TGG | - | chr4_2:19620845-19620864 | Msa0593420:intron | 45.0% | |
| ATGCAAGGTGGTAACTTCAG+TGG | - | chr4_2:19620904-19620923 | Msa0593420:intron | 45.0% | |
| GATTCAAACTACAGAGGAGG+AGG | - | chr4_2:19620988-19621007 | Msa0593420:intron | 45.0% | |
| !! | TCGTTGATTCCGCTAGAACT+CGG | - | chr4_2:19621019-19621038 | Msa0593420:intron | 45.0% |
| ! | GTTGTTGATCCGAGTTCTAG+CGG | + | chr4_2:19621031-19621050 | None:intergenic | 45.0% |
| TTCCTGCATTTCACCACAGA+AGG | - | chr4_2:19621057-19621076 | Msa0593420:intron | 45.0% | |
| TACCTTCTGTGGTGAAATGC+AGG | + | chr4_2:19621062-19621081 | None:intergenic | 45.0% | |
| CTGTACCAGAATACCTTCTG+TGG | + | chr4_2:19621073-19621092 | None:intergenic | 45.0% | |
| !! | GAAGGTATTCTGGTACAGCA+AGG | - | chr4_2:19621075-19621094 | Msa0593420:intron | 45.0% |
| CTTGGACAACACTCAACAGT+TGG | - | chr4_2:19621126-19621145 | Msa0593420:intron | 45.0% | |
| CAGAATAGTCCTTCTCACCA+TGG | + | chr4_2:19621158-19621177 | None:intergenic | 45.0% | |
| CATGGTGAGAAGGACTATTC+TGG | - | chr4_2:19621156-19621175 | Msa0593420:intron | 45.0% | |
| TGGTGAGAAGGACTATTCTG+GGG | - | chr4_2:19621158-19621177 | Msa0593420:intron | 45.0% | |
| ! | CACTGATGTGGCGATTTTCT+CGG | - | chr4_2:19621215-19621234 | Msa0593420:intron | 45.0% |
| ACCTCTTAGCACAATACCAG+TGG | + | chr4_2:19621244-19621263 | None:intergenic | 45.0% | |
| GGTCTGCACCATATTCACTC+GGG | + | chr4_2:19619853-19619872 | None:intergenic | 50.0% | |
| GGGTCTGCACCATATTCACT+CGG | + | chr4_2:19619854-19619873 | None:intergenic | 50.0% | |
| GAATATGGTGCAGACCCAAC+TGG | - | chr4_2:19619857-19619876 | Msa0593420:CDS | 50.0% | |
| ! | GGGTCTTGAATTGGTAGCAG+GGG | - | chr4_2:19619940-19619959 | Msa0593420:CDS | 50.0% |
| GGTAGCAGGGGTGAATGATT+TGG | - | chr4_2:19619952-19619971 | Msa0593420:CDS | 50.0% | |
| ACTCCCAGGTGGCAATATTG+TGG | - | chr4_2:19620033-19620052 | Msa0593420:CDS | 50.0% | |
| CTCACCACAATATTGCCACC+TGG | + | chr4_2:19620040-19620059 | None:intergenic | 50.0% | |
| !! | GGTGGTGTCCTTTTTAGGCT+AGG | - | chr4_2:19620419-19620438 | Msa0593420:CDS | 50.0% |
| TCAACTAGATGTCGGTCACC+AGG | + | chr4_2:19620841-19620860 | None:intergenic | 50.0% | |
| GGACAACACTCAACAGTTGG+TGG | - | chr4_2:19621129-19621148 | Msa0593420:intron | 50.0% | |
| !! | TCAACAGTTGGTGGTGACCA+TGG | - | chr4_2:19621138-19621157 | Msa0593420:intron | 50.0% |
| CGACAATGCAGTCACTGATG+TGG | - | chr4_2:19621203-19621222 | Msa0593420:intron | 50.0% | |
| GCCACTGGTATTGTGCTAAG+AGG | - | chr4_2:19621240-19621259 | Msa0593420:intron | 50.0% | |
| AACAAAGCAGCAGGATTCGG+TGG | - | chr4_2:19621297-19621316 | Msa0593420:intron | 50.0% | |
| ATGGGCTTGAGATCAACAGC+TGG | - | chr4_2:19621612-19621631 | Msa0593420:CDS | 50.0% | |
| TGGGCTTGAGATCAACAGCT+GGG | - | chr4_2:19621613-19621632 | Msa0593420:CDS | 50.0% | |
| GCTGGGAAGTTAACTGTGAG+TGG | - | chr4_2:19621630-19621649 | Msa0593420:CDS | 50.0% | |
| TGGCTCCCCTTGAGCATAAA+AGG | + | chr4_2:19621730-19621749 | None:intergenic | 50.0% | |
| ! | GAAGCAGGTGGTGATGCCAA+AGG | + | chr4_2:19619718-19619737 | None:intergenic | 55.0% |
| ! | GCAGGGGTGAATGATTTGGG+AGG | - | chr4_2:19619956-19619975 | Msa0593420:CDS | 55.0% |
| ! | TGGTGGTGACCATGGTGAGA+AGG | - | chr4_2:19621146-19621165 | Msa0593420:intron | 55.0% |
| !! | GCAGCAGGATTCGGTGGTAT+AGG | - | chr4_2:19621303-19621322 | Msa0593420:intron | 55.0% |
| ! | GCGATTTTCTCGGCAGCCAC+TGG | - | chr4_2:19621225-19621244 | Msa0593420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 19619458 | 19622132 | 19619458 | ID=Msa0593420;Name=Msa0593420 |
| chr4_2 | mRNA | 19619458 | 19622132 | 19619458 | ID=Msa0593420-mRNA-1;Parent=Msa0593420;Name=Msa0593420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|1|1|3|281|480 |
| chr4_2 | exon | 19619458 | 19620788 | 19619458 | ID=Msa0593420-mRNA-1:exon:5615;Parent=Msa0593420-mRNA-1 |
| chr4_2 | exon | 19621536 | 19621757 | 19621536 | ID=Msa0593420-mRNA-1:exon:5614;Parent=Msa0593420-mRNA-1 |
| chr4_2 | exon | 19621837 | 19622132 | 19621837 | ID=Msa0593420-mRNA-1:exon:5613;Parent=Msa0593420-mRNA-1 |
| chr4_2 | five_prime_UTR | 19622008 | 19622132 | 19622008 | ID=Msa0593420-mRNA-1:five_prime_utr;Parent=Msa0593420-mRNA-1 |
| chr4_2 | CDS | 19621837 | 19622007 | 19621837 | ID=Msa0593420-mRNA-1:cds;Parent=Msa0593420-mRNA-1 |
| chr4_2 | CDS | 19621536 | 19621757 | 19621536 | ID=Msa0593420-mRNA-1:cds;Parent=Msa0593420-mRNA-1 |
| chr4_2 | CDS | 19619739 | 19620788 | 19619739 | ID=Msa0593420-mRNA-1:cds;Parent=Msa0593420-mRNA-1 |
| chr4_2 | three_prime_UTR | 19619458 | 19619738 | 19619458 | ID=Msa0593420-mRNA-1:three_prime_utr;Parent=Msa0593420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
