Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655290 | XP_013457385.1 | 95.625 | 480 | 21 | 0 | 1 | 480 | 1 | 480 | 0.0 | 916 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655290 | sp|O49432|QRT3_ARATH | 46.516 | 488 | 225 | 8 | 8 | 480 | 13 | 479 | 1.94e-138 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0655290 | Msa0699060 | 0.857330 | 1.756898e-62 | -8.615850e-47 |
| Msa0475790 | Msa0655290 | 0.803924 | 2.764014e-49 | -8.615850e-47 |
| Msa0561960 | Msa0655290 | 0.856400 | 3.300622e-62 | -8.615850e-47 |
| Msa0593420 | Msa0655290 | 0.957662 | 1.579160e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655290 | MtrunA17_Chr4g0052711 | 95.625 | 480 | 21 | 0 | 1 | 480 | 1 | 480 | 0.0 | 916 |
| Msa0655290 | MtrunA17_Chr2g0297001 | 66.260 | 492 | 150 | 6 | 1 | 480 | 4 | 491 | 0.0 | 606 |
| Msa0655290 | MtrunA17_Chr2g0296981 | 48.309 | 414 | 195 | 6 | 60 | 468 | 82 | 481 | 7.61e-135 | 398 |
| Msa0655290 | MtrunA17_Chr6g0455291 | 49.165 | 419 | 187 | 7 | 67 | 480 | 93 | 490 | 1.70e-127 | 379 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655290 | AT4G20040.1 | 59.375 | 448 | 166 | 5 | 37 | 474 | 36 | 477 | 0.0 | 532 |
| Msa0655290 | AT4G20050.7 | 46.516 | 488 | 225 | 8 | 8 | 480 | 13 | 479 | 1.98e-139 | 410 |
| Msa0655290 | AT4G20050.6 | 46.516 | 488 | 225 | 8 | 8 | 480 | 13 | 479 | 1.98e-139 | 410 |
| Msa0655290 | AT4G20050.2 | 46.516 | 488 | 225 | 8 | 8 | 480 | 13 | 479 | 1.98e-139 | 410 |
| Msa0655290 | AT4G20050.1 | 46.516 | 488 | 225 | 8 | 8 | 480 | 13 | 479 | 1.98e-139 | 410 |
| Msa0655290 | AT4G20050.5 | 46.516 | 488 | 225 | 8 | 8 | 480 | 38 | 504 | 2.36e-139 | 410 |
| Msa0655290 | AT4G20050.4 | 50.249 | 402 | 173 | 5 | 85 | 480 | 1 | 381 | 3.64e-128 | 377 |
| Msa0655290 | AT4G20050.3 | 50.249 | 402 | 173 | 5 | 85 | 480 | 1 | 381 | 3.64e-128 | 377 |
Find 115 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATGTGCTACAAATTT+TGG | 0.146774 | 4_3:+63835621 | None:intergenic |
| ACAATTGGAACCTTCTTATT+AGG | 0.182192 | 4_3:+63835843 | None:intergenic |
| GGCTGTTAAAGGTCAAATTT+TGG | 0.195856 | 4_3:-63835901 | Msa0655290:CDS |
| ACTATGAAGACGTAACTTTC+AGG | 0.234037 | 4_3:-63836415 | Msa0655290:CDS |
| TGGCTCCCCTTGAGCATAAA+AGG | 0.234400 | 4_3:+63835641 | None:intergenic |
| GTCACTAATTGTCTATTTCT+TGG | 0.242965 | 4_3:-63835945 | Msa0655290:CDS |
| TAGAATTGACAACTGTTATA+TGG | 0.260121 | 4_3:-63836009 | Msa0655290:CDS |
| GGTAGCAGGGGTGAATGATT+TGG | 0.285877 | 4_3:-63837416 | Msa0655290:CDS |
| ATGTGCATTATTAGAGTAAC+AGG | 0.287505 | 4_3:-63837549 | Msa0655290:intron |
| TCACTAATTGTCTATTTCTT+GGG | 0.292562 | 4_3:-63835944 | Msa0655290:CDS |
| CCACCTGGGAGTAAAGTAAT+TGG | 0.305752 | 4_3:+63837346 | None:intergenic |
| GTAGCAGGGGTGAATGATTT+GGG | 0.315095 | 4_3:-63837415 | Msa0655290:CDS |
| GGTCAAGCTAACATTCTATC+AGG | 0.316674 | 4_3:-63836107 | Msa0655290:CDS |
| TATAGGTATCTTAGTGAAAT+TGG | 0.326605 | 4_3:-63836048 | Msa0655290:CDS |
| AGTATGACTGAATAGGTAAA+AGG | 0.339747 | 4_3:-63836581 | Msa0655290:intron |
| CATGGTGTGAAGGACTATTC+TGG | 0.343627 | 4_3:-63836212 | Msa0655290:CDS |
| ATCCTCCACTGCTTTCAAAA+TGG | 0.349501 | 4_3:+63837468 | None:intergenic |
| TGAGTGGTAATGGCACAAAA+TGG | 0.354252 | 4_3:-63835722 | Msa0655290:CDS |
| TTTCACCACAGAAGGTATTC+TGG | 0.360872 | 4_3:-63836303 | Msa0655290:CDS |
| GTATTGTACCCGAGTGAATA+TGG | 0.364196 | 4_3:-63837526 | Msa0655290:CDS |
| TTAGTGACATGAACTTGAAC+AGG | 0.390498 | 4_3:+63835960 | None:intergenic |
| GCAGCAGGATTCGGTGGTAT+AGG | 0.397151 | 4_3:-63836065 | Msa0655290:CDS |
| GAATTTATATAGTTTATCAT+TGG | 0.398984 | 4_3:+63835285 | None:intergenic |
| TACTCTCTTCTGATCCTGTT+GGG | 0.411136 | 4_3:+63837497 | None:intergenic |
| GTTGCAAAAGGGTCTTGAAT+TGG | 0.413949 | 4_3:-63837437 | Msa0655290:CDS |
| CGAACATGACTAATCCGATT+AGG | 0.413954 | 4_3:+63835669 | None:intergenic |
| AACTGTTATATGGATTATAC+TGG | 0.421131 | 4_3:-63835999 | Msa0655290:CDS |
| TGACCATCTAGATTTACAAT+TGG | 0.425857 | 4_3:+63835828 | None:intergenic |
| GCAACAATTAGCTAGTCCTT+TGG | 0.445926 | 4_3:-63837669 | Msa0655290:CDS |
| CAACTTTATTAGCTTTATGT+AGG | 0.446918 | 4_3:-63835374 | Msa0655290:three_prime_UTR |
| GGATGCATTTAAGTTGCAAA+AGG | 0.447345 | 4_3:-63837449 | Msa0655290:CDS |
| TATAACAAAGCAGCAGGATT+CGG | 0.458956 | 4_3:-63836074 | Msa0655290:CDS |
| ATGGTGTGAAGGACTATTCT+GGG | 0.465563 | 4_3:-63836211 | Msa0655290:CDS |
| CTATGAAGACGTAACTTTCA+GGG | 0.468257 | 4_3:-63836414 | Msa0655290:CDS |
| TGAGAAAGAAGCTAAAGGTT+TGG | 0.469132 | 4_3:-63835562 | Msa0655290:CDS |
| TACCTTCTGTGGTGAAATGC+AGG | 0.474883 | 4_3:+63836309 | None:intergenic |
| GTTCCAATTGTAAATCTAGA+TGG | 0.476983 | 4_3:-63835831 | Msa0655290:CDS |
| ATCTTTGTTTGTGAAGAAGC+AGG | 0.484850 | 4_3:+63837638 | None:intergenic |
| CACTAATTGTCTATTTCTTG+GGG | 0.486959 | 4_3:-63835943 | Msa0655290:CDS |
| AAGGGTCTTGAATTGGTAGC+AGG | 0.488945 | 4_3:-63837430 | Msa0655290:CDS |
| CTACTCTCTTCTGATCCTGT+TGG | 0.493311 | 4_3:+63837496 | None:intergenic |
| CTTGGACAACACTCAACAGT+TGG | 0.494542 | 4_3:-63836242 | Msa0655290:CDS |
| GGTGTTATTATTGATTTGCA+AGG | 0.498421 | 4_3:-63837391 | Msa0655290:CDS |
| AAGTTAACTGTGAGTGGTAA+TGG | 0.500694 | 4_3:-63835732 | Msa0655290:CDS |
| CTCACCACAATATTGCCACC+TGG | 0.514248 | 4_3:+63837331 | None:intergenic |
| CATTGTTATAACAAAGCAGC+AGG | 0.517528 | 4_3:-63836080 | Msa0655290:CDS |
| GAATATGGTGCAGACCCAAC+AGG | 0.517606 | 4_3:-63837511 | Msa0655290:CDS |
| TCGTTGATTCCGCTAGAACT+CGG | 0.522480 | 4_3:-63836349 | Msa0655290:CDS |
| TAGAAACAATGTGAATGGTA+TGG | 0.524399 | 4_3:-63835775 | Msa0655290:CDS |
| GCCACTGGTATTGTGCTAAG+AGG | 0.526724 | 4_3:-63836128 | Msa0655290:CDS |
| GTTATTATTGATTTGCAAGG+TGG | 0.531694 | 4_3:-63837388 | Msa0655290:CDS |
| TTCCTGCATTTCACCACAGA+AGG | 0.538916 | 4_3:-63836311 | Msa0655290:CDS |
| GGTATCTTAGTGAAATTGGC+AGG | 0.545694 | 4_3:-63836044 | Msa0655290:CDS |
| AACAATAAGAAAGAAGCAAG+GGG | 0.545806 | 4_3:-63835524 | Msa0655290:exon |
| TCAACTAGATGTCGGTCACC+AGG | 0.548294 | 4_3:+63836530 | None:intergenic |
| ATTTAGTAATGTTGATCAAG+TGG | 0.550162 | 4_3:-63835805 | Msa0655290:CDS |
| GGGTCTGCACCATATTCACT+CGG | 0.550559 | 4_3:+63837517 | None:intergenic |
| AGAACAAAATGAGTGTATGA+TGG | 0.550795 | 4_3:+63837855 | None:intergenic |
| TGCTTCTTCACAAACAAAGA+TGG | 0.551117 | 4_3:-63837636 | Msa0655290:intron |
| AAAAGTATCAGATGCTCTCA+AGG | 0.551314 | 4_3:+63836553 | None:intergenic |
| CAGTGGTGATCCTAATAAGA+AGG | 0.551347 | 4_3:-63835853 | Msa0655290:CDS |
| ACTCCCAGGTGGCAATATTG+TGG | 0.555045 | 4_3:-63837335 | Msa0655290:intron |
| GATGCATTTAAGTTGCAAAA+GGG | 0.555247 | 4_3:-63837448 | Msa0655290:CDS |
| GTCAAGCTAACATTCTATCA+GGG | 0.557104 | 4_3:-63836106 | Msa0655290:CDS |
| GAGAGTGAGAAAGAAGCTAA+AGG | 0.558237 | 4_3:-63835567 | Msa0655290:CDS |
| CTCTGTAGTTTGAATCGAAG+AGG | 0.559415 | 4_3:+63836387 | None:intergenic |
| ATTGATAGAAACAATGTGAA+TGG | 0.559517 | 4_3:-63835780 | Msa0655290:CDS |
| GGAATTTATGCACAAAACAA+TGG | 0.561541 | 4_3:-63836443 | Msa0655290:CDS |
| ATGGGCTTGAGATCAACAGC+TGG | 0.563909 | 4_3:-63835756 | Msa0655290:CDS |
| GTCTGATAATGTTGTAGTTG+TGG | 0.571268 | 4_3:-63835589 | Msa0655290:CDS |
| GATTCAAACTACAGAGGAGG+AGG | 0.575299 | 4_3:-63836380 | Msa0655290:CDS |
| GAACAATAAGAAAGAAGCAA+GGG | 0.576277 | 4_3:-63835525 | Msa0655290:exon |
| AGAAACAATGTGAATGGTAT+GGG | 0.578616 | 4_3:-63835774 | Msa0655290:CDS |
| AAACCAATTACTTTACTCCC+AGG | 0.579529 | 4_3:-63837349 | Msa0655290:CDS |
| GGACAACACTCAACAGTTGG+TGG | 0.579683 | 4_3:-63836239 | Msa0655290:CDS |
| TGTAAGTCAAGTCATCAAGT+AGG | 0.579799 | 4_3:+63835258 | None:intergenic |
| AGGGTCTTGAATTGGTAGCA+GGG | 0.590919 | 4_3:-63837429 | Msa0655290:CDS |
| GTTGTTGATCCGAGTTCTAG+CGG | 0.596944 | 4_3:+63836340 | None:intergenic |
| GAGTGGTAATGGCACAAAAT+GGG | 0.598153 | 4_3:-63835721 | Msa0655290:CDS |
| TACAACATTATCAGACACAT+TGG | 0.601963 | 4_3:+63835596 | None:intergenic |
| ATGCAAGGTGGTAACTTCAG+TGG | 0.602840 | 4_3:-63836464 | Msa0655290:CDS |
| AACAAAGCAGCAGGATTCGG+TGG | 0.608346 | 4_3:-63836071 | Msa0655290:CDS |
| CGACAATGCAGTCACTGATG+TGG | 0.611847 | 4_3:-63836165 | Msa0655290:CDS |
| TCACCACAATATTGCCACCT+GGG | 0.614937 | 4_3:+63837332 | None:intergenic |
| TTCGATTCAAACTACAGAGG+AGG | 0.620178 | 4_3:-63836383 | Msa0655290:CDS |
| GGATTATACTGGTATAGTAA+CGG | 0.620931 | 4_3:-63835988 | Msa0655290:CDS |
| GCTGGGAAGTTAACTGTGAG+TGG | 0.626842 | 4_3:-63835738 | Msa0655290:CDS |
| GGGTCTTGAATTGGTAGCAG+GGG | 0.627530 | 4_3:-63837428 | Msa0655290:CDS |
| TGGTGGTGACCATGGTGTGA+AGG | 0.628754 | 4_3:-63836222 | Msa0655290:CDS |
| GAAGCAGGTGGTGATGCCAA+AGG | 0.632343 | 4_3:+63837653 | None:intergenic |
| CTGTACCAGAATACCTTCTG+TGG | 0.634222 | 4_3:+63836298 | None:intergenic |
| TGGGCTTGAGATCAACAGCT+GGG | 0.640163 | 4_3:-63835755 | Msa0655290:CDS |
| TCAACAGTTGGTGGTGACCA+TGG | 0.642439 | 4_3:-63836230 | Msa0655290:CDS |
| ACCGACATCTAGTTGAGATG+TGG | 0.645741 | 4_3:-63836523 | Msa0655290:CDS |
| TGAACAATAAGAAAGAAGCA+AGG | 0.648792 | 4_3:-63835526 | Msa0655290:exon |
| ATGACTGAATAGGTAAAAGG+AGG | 0.649788 | 4_3:-63836578 | Msa0655290:intron |
| CAGACAAAAGAATATATGCA+AGG | 0.649813 | 4_3:-63836479 | Msa0655290:CDS |
| ACCTCTTAGCACAATACCAG+TGG | 0.650646 | 4_3:+63836127 | None:intergenic |
| ACCACATCTCAACTAGATGT+CGG | 0.651311 | 4_3:+63836522 | None:intergenic |
| ATAGTGGATAATATGTTCAG+TGG | 0.656109 | 4_3:-63835870 | Msa0655290:CDS |
| TCAAGCTAACATTCTATCAG+GGG | 0.670436 | 4_3:-63836105 | Msa0655290:CDS |
| CAGAATAGTCCTTCACACCA+TGG | 0.670555 | 4_3:+63836213 | None:intergenic |
| GGTCTGCACCATATTCACTC+GGG | 0.672480 | 4_3:+63837518 | None:intergenic |
| GATTGAAGGACTTGAAGTGA+AGG | 0.677077 | 4_3:+63837911 | None:intergenic |
| CCAATTACTTTACTCCCAGG+TGG | 0.681627 | 4_3:-63837346 | Msa0655290:CDS |
| GAAGGTATTCTGGTACAGCA+AGG | 0.682518 | 4_3:-63836293 | Msa0655290:CDS |
| GCAGGGGTGAATGATTTGGG+AGG | 0.682565 | 4_3:-63837412 | Msa0655290:CDS |
| ACAAAAGAATATATGCAAGG+TGG | 0.687781 | 4_3:-63836476 | Msa0655290:CDS |
| CTCTTCGATTCAAACTACAG+AGG | 0.692930 | 4_3:-63836386 | Msa0655290:CDS |
| TGGTGTGAAGGACTATTCTG+GGG | 0.705043 | 4_3:-63836210 | Msa0655290:CDS |
| TAGTGACATGAACTTGAACA+GGG | 0.715958 | 4_3:+63835961 | None:intergenic |
| TTTGTTTGTGAAGAAGCAGG+TGG | 0.716731 | 4_3:+63837641 | None:intergenic |
| TGTGCATTATTAGAGTAACA+GGG | 0.739578 | 4_3:-63837548 | Msa0655290:intron |
| ACAATAAGAAAGAAGCAAGG+GGG | 0.749795 | 4_3:-63835523 | Msa0655290:exon |
| TTAAAGTATGAAATTCTCAG+TGG | 0.757215 | 4_3:-63837792 | Msa0655290:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAAAAAGATATGA+GGG | + | chr4_3:63836051-63836070 | None:intergenic | 10.0% |
| !!! | ATATTGAAACAGATTTTTAA+TGG | + | chr4_3:63835347-63835366 | None:intergenic | 15.0% |
| !!! | TATTTCATTTAAGATTTGAT+TGG | + | chr4_3:63835981-63836000 | None:intergenic | 15.0% |
| !! | ATCAAATCTTAAATGAAATA+TGG | - | chr4_3:63835981-63836000 | Msa0655290:CDS | 15.0% |
| !! | TTATATTAAAAAGATATGAG+GGG | + | chr4_3:63836050-63836069 | None:intergenic | 15.0% |
| !! | CTTTATATTAAAAAGATATG+AGG | + | chr4_3:63836052-63836071 | None:intergenic | 15.0% |
| !! | GAATTTATATAGTTTATCAT+TGG | + | chr4_3:63837887-63837906 | None:intergenic | 15.0% |
| !!! | GGTGTATTTTGTTTTATTAT+TGG | - | chr4_3:63835398-63835417 | Msa0655290:three_prime_UTR | 20.0% |
| !! | CATTGTACATTGTTAAAAAT+CGG | + | chr4_3:63835603-63835622 | None:intergenic | 20.0% |
| !! | TAACAATTCAATTATGTTAG+TGG | - | chr4_3:63835933-63835952 | Msa0655290:CDS | 20.0% |
| !!! | TTTCTGAAAAAACAGTAAAA+TGG | + | chr4_3:63836194-63836213 | None:intergenic | 20.0% |
| !!! | GTTTATATGAGTATTCTTTT+AGG | - | chr4_3:63836310-63836329 | Msa0655290:CDS | 20.0% |
| !! | TAAATGCAGTAAAAAACATT+TGG | - | chr4_3:63836448-63836467 | Msa0655290:CDS | 20.0% |
| !!! | GGATGCTAATATTTTAATAA+AGG | - | chr4_3:63837247-63837266 | Msa0655290:intron | 20.0% |
| !!! | ATTTTAATAAAGGCTGTTAA+AGG | - | chr4_3:63837257-63837276 | Msa0655290:intron | 20.0% |
| !!! | ATCTTTTTTATCTGGATTGA+AGG | + | chr4_3:63835275-63835294 | None:intergenic | 25.0% |
| !!! | ACAACTGTATCTTTTTTATC+TGG | + | chr4_3:63835283-63835302 | None:intergenic | 25.0% |
| ! | TTAAAGTATGAAATTCTCAG+TGG | - | chr4_3:63835377-63835396 | Msa0655290:three_prime_UTR | 25.0% |
| ! | TCTTAAATGAAATATGGTTG+AGG | - | chr4_3:63835987-63836006 | Msa0655290:CDS | 25.0% |
| !!! | CTGGTTTTGAATTTTATCAT+AGG | + | chr4_3:63836078-63836097 | None:intergenic | 25.0% |
| !! | ATTTTATTGCCGACAATTAT+TGG | - | chr4_3:63836122-63836141 | Msa0655290:CDS | 25.0% |
| ! | TAGGATTCTTCCAATAAATT+TGG | - | chr4_3:63836396-63836415 | Msa0655290:CDS | 25.0% |
| !! | CATTTAGTTCAATTATCCTT+TGG | + | chr4_3:63836434-63836453 | None:intergenic | 25.0% |
| ! | TAGAAAACTAACTAGTAACT+TGG | + | chr4_3:63836479-63836498 | None:intergenic | 25.0% |
| !!! | AGATGAACTAACTTGTTTAT+GGG | + | chr4_3:63836532-63836551 | None:intergenic | 25.0% |
| !!! | AAGATGAACTAACTTGTTTA+TGG | + | chr4_3:63836533-63836552 | None:intergenic | 25.0% |
| !!! | TTCATATCAAGTTGTTTTCT+TGG | - | chr4_3:63836909-63836928 | Msa0655290:intron | 25.0% |
| ! | TATAGGTATCTTAGTGAAAT+TGG | - | chr4_3:63837121-63837140 | Msa0655290:intron | 25.0% |
| ! | TAGAATTGACAACTGTTATA+TGG | - | chr4_3:63837160-63837179 | Msa0655290:intron | 25.0% |
| !! | AACTGTTATATGGATTATAC+TGG | - | chr4_3:63837170-63837189 | Msa0655290:intron | 25.0% |
| !! | TCACTAATTGTCTATTTCTT+GGG | - | chr4_3:63837225-63837244 | Msa0655290:intron | 25.0% |
| ! | ATTTAGTAATGTTGATCAAG+TGG | - | chr4_3:63837364-63837383 | Msa0655290:CDS | 25.0% |
| ! | ATTGATAGAAACAATGTGAA+TGG | - | chr4_3:63837389-63837408 | Msa0655290:CDS | 25.0% |
| !!! | CAACTTTATTAGCTTTATGT+AGG | - | chr4_3:63837795-63837814 | Msa0655290:exon | 25.0% |
| !!! | TTTTTTTGTGATTACAGGTT+CGG | + | chr4_3:63837832-63837851 | None:intergenic | 25.0% |
| AGAACAAAATGAGTGTATGA+TGG | + | chr4_3:63835317-63835336 | None:intergenic | 30.0% | |
| ATGTGCATTATTAGAGTAAC+AGG | - | chr4_3:63835620-63835639 | Msa0655290:CDS | 30.0% | |
| TGTGCATTATTAGAGTAACA+GGG | - | chr4_3:63835621-63835640 | Msa0655290:CDS | 30.0% | |
| !! | GATGCATTTAAGTTGCAAAA+GGG | - | chr4_3:63835721-63835740 | Msa0655290:CDS | 30.0% |
| !! | GGTGTTATTATTGATTTGCA+AGG | - | chr4_3:63835778-63835797 | Msa0655290:CDS | 30.0% |
| !! | GTTATTATTGATTTGCAAGG+TGG | - | chr4_3:63835781-63835800 | Msa0655290:CDS | 30.0% |
| TCCACATGCTACAAAATAAA+TGG | + | chr4_3:63835882-63835901 | None:intergenic | 30.0% | |
| !!! | ATCGTTTTAAGTTAGTTTGC+TGG | + | chr4_3:63836097-63836116 | None:intergenic | 30.0% |
| AGAAGAAGAAAAATGTACTC+AGG | + | chr4_3:63836171-63836190 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTTCAGAAAACACA+AGG | - | chr4_3:63836199-63836218 | Msa0655290:CDS | 30.0% |
| !!! | TTTTTTCAGAAAACACAAGG+TGG | - | chr4_3:63836202-63836221 | Msa0655290:CDS | 30.0% |
| GTGTTAAGTGCCAAATTTAT+TGG | + | chr4_3:63836409-63836428 | None:intergenic | 30.0% | |
| ATGCAGTAAAAAACATTTGG+AGG | - | chr4_3:63836451-63836470 | Msa0655290:CDS | 30.0% | |
| ! | TATGAGAAGTATGACTGAAT+AGG | - | chr4_3:63836581-63836600 | Msa0655290:intron | 30.0% |
| AGTATGACTGAATAGGTAAA+AGG | - | chr4_3:63836588-63836607 | Msa0655290:intron | 30.0% | |
| !! | TTCTTTTGTCTGAAGTTTCT+TGG | + | chr4_3:63836682-63836701 | None:intergenic | 30.0% |
| CAGACAAAAGAATATATGCA+AGG | - | chr4_3:63836690-63836709 | Msa0655290:intron | 30.0% | |
| ACAAAAGAATATATGCAAGG+TGG | - | chr4_3:63836693-63836712 | Msa0655290:intron | 30.0% | |
| GGAATTTATGCACAAAACAA+TGG | - | chr4_3:63836726-63836745 | Msa0655290:intron | 30.0% | |
| GGATTATACTGGTATAGTAA+CGG | - | chr4_3:63837181-63837200 | Msa0655290:intron | 30.0% | |
| ! | GTCACTAATTGTCTATTTCT+TGG | - | chr4_3:63837224-63837243 | Msa0655290:intron | 30.0% |
| ! | CACTAATTGTCTATTTCTTG+GGG | - | chr4_3:63837226-63837245 | Msa0655290:intron | 30.0% |
| ! | GCTGTTAAAGGTCAAATTTT+GGG | - | chr4_3:63837269-63837288 | Msa0655290:intron | 30.0% |
| !!! | AATTTTGGGTTTGAACATAG+TGG | - | chr4_3:63837283-63837302 | Msa0655290:intron | 30.0% |
| !! | ATAGTGGATAATATGTTCAG+TGG | - | chr4_3:63837299-63837318 | Msa0655290:intron | 30.0% |
| ACAATTGGAACCTTCTTATT+AGG | + | chr4_3:63837329-63837348 | None:intergenic | 30.0% | |
| GTTCCAATTGTAAATCTAGA+TGG | - | chr4_3:63837338-63837357 | Msa0655290:CDS | 30.0% | |
| TGACCATCTAGATTTACAAT+TGG | + | chr4_3:63837344-63837363 | None:intergenic | 30.0% | |
| TAGAAACAATGTGAATGGTA+TGG | - | chr4_3:63837394-63837413 | Msa0655290:CDS | 30.0% | |
| AGAAACAATGTGAATGGTAT+GGG | - | chr4_3:63837395-63837414 | Msa0655290:CDS | 30.0% | |
| !! | AGCTGATTTTTCATCAGTTT+TGG | - | chr4_3:63837472-63837491 | Msa0655290:CDS | 30.0% |
| !! | CAGTTTTGGTATTTCCTAAT+CGG | - | chr4_3:63837486-63837505 | Msa0655290:CDS | 30.0% |
| ! | GATATTCCTTTTATGCTCAA+GGG | - | chr4_3:63837522-63837541 | Msa0655290:CDS | 30.0% |
| ! | ATATTCCTTTTATGCTCAAG+GGG | - | chr4_3:63837523-63837542 | Msa0655290:CDS | 30.0% |
| ! | ACAGAATGTGCTACAAATTT+TGG | + | chr4_3:63837551-63837570 | None:intergenic | 30.0% |
| TACAACATTATCAGACACAT+TGG | + | chr4_3:63837576-63837595 | None:intergenic | 30.0% | |
| TGAACAATAAGAAAGAAGCA+AGG | - | chr4_3:63837643-63837662 | Msa0655290:CDS | 30.0% | |
| GAACAATAAGAAAGAAGCAA+GGG | - | chr4_3:63837644-63837663 | Msa0655290:CDS | 30.0% | |
| AACAATAAGAAAGAAGCAAG+GGG | - | chr4_3:63837645-63837664 | Msa0655290:CDS | 30.0% | |
| !!! | CAGCTTTTTTTTGTGATTAC+AGG | + | chr4_3:63837837-63837856 | None:intergenic | 30.0% |
| ! | TTCTGATAGCTTTTGTTCTC+TGG | + | chr4_3:63835463-63835482 | None:intergenic | 35.0% |
| ! | ATCTTTGTTTGTGAAGAAGC+AGG | + | chr4_3:63835534-63835553 | None:intergenic | 35.0% |
| TGCTTCTTCACAAACAAAGA+TGG | - | chr4_3:63835533-63835552 | Msa0655290:exon | 35.0% | |
| !! | GGATGCATTTAAGTTGCAAA+AGG | - | chr4_3:63835720-63835739 | Msa0655290:CDS | 35.0% |
| AAACCAATTACTTTACTCCC+AGG | - | chr4_3:63835820-63835839 | Msa0655290:CDS | 35.0% | |
| !!! | GCCATTTATTTTGTAGCATG+TGG | - | chr4_3:63835878-63835897 | Msa0655290:CDS | 35.0% |
| AGTCTTGGACCAATAATTGT+CGG | + | chr4_3:63836134-63836153 | None:intergenic | 35.0% | |
| CAAAATATGTGCTTTCAGAC+AGG | - | chr4_3:63836333-63836352 | Msa0655290:CDS | 35.0% | |
| AATCAAGAGCAAGATTCGTT+AGG | - | chr4_3:63836377-63836396 | Msa0655290:CDS | 35.0% | |
| !! | TGAACTAACTTGTTTATGGG+TGG | + | chr4_3:63836529-63836548 | None:intergenic | 35.0% |
| ATGACTGAATAGGTAAAAGG+AGG | - | chr4_3:63836591-63836610 | Msa0655290:intron | 35.0% | |
| !! | AAAAGTATCAGATGCTCTCA+AGG | + | chr4_3:63836619-63836638 | None:intergenic | 35.0% |
| ACTATGAAGACGTAACTTTC+AGG | - | chr4_3:63836754-63836773 | Msa0655290:intron | 35.0% | |
| CTATGAAGACGTAACTTTCA+GGG | - | chr4_3:63836755-63836774 | Msa0655290:intron | 35.0% | |
| GTCAAGCTAACATTCTATCA+GGG | - | chr4_3:63837063-63837082 | Msa0655290:intron | 35.0% | |
| TCAAGCTAACATTCTATCAG+GGG | - | chr4_3:63837064-63837083 | Msa0655290:intron | 35.0% | |
| CATTGTTATAACAAAGCAGC+AGG | - | chr4_3:63837089-63837108 | Msa0655290:intron | 35.0% | |
| TATAACAAAGCAGCAGGATT+CGG | - | chr4_3:63837095-63837114 | Msa0655290:intron | 35.0% | |
| TAGTGACATGAACTTGAACA+GGG | + | chr4_3:63837211-63837230 | None:intergenic | 35.0% | |
| TTAGTGACATGAACTTGAAC+AGG | + | chr4_3:63837212-63837231 | None:intergenic | 35.0% | |
| ! | GGCTGTTAAAGGTCAAATTT+TGG | - | chr4_3:63837268-63837287 | Msa0655290:intron | 35.0% |
| AAGTTAACTGTGAGTGGTAA+TGG | - | chr4_3:63837437-63837456 | Msa0655290:CDS | 35.0% | |
| ! | CGATATTCCTTTTATGCTCA+AGG | - | chr4_3:63837521-63837540 | Msa0655290:CDS | 35.0% |
| ! | GTCTGATAATGTTGTAGTTG+TGG | - | chr4_3:63837580-63837599 | Msa0655290:intron | 35.0% |
| TGAGAAAGAAGCTAAAGGTT+TGG | - | chr4_3:63837607-63837626 | Msa0655290:intron | 35.0% | |
| ACAATAAGAAAGAAGCAAGG+GGG | - | chr4_3:63837646-63837665 | Msa0655290:CDS | 35.0% | |
| GCAACAATTAGCTAGTCCTT+TGG | - | chr4_3:63835500-63835519 | Msa0655290:three_prime_UTR | 40.0% | |
| TTTGTTTGTGAAGAAGCAGG+TGG | + | chr4_3:63835531-63835550 | None:intergenic | 40.0% | |
| GTATTGTACCCGAGTGAATA+TGG | - | chr4_3:63835643-63835662 | Msa0655290:CDS | 40.0% | |
| TACTCTCTTCTGATCCTGTT+GGG | + | chr4_3:63835675-63835694 | None:intergenic | 40.0% | |
| !!! | TGATGCCATTTTGAAAGCAG+TGG | - | chr4_3:63835696-63835715 | Msa0655290:CDS | 40.0% |
| ATCCTCCACTGCTTTCAAAA+TGG | + | chr4_3:63835704-63835723 | None:intergenic | 40.0% | |
| GTTGCAAAAGGGTCTTGAAT+TGG | - | chr4_3:63835732-63835751 | Msa0655290:CDS | 40.0% | |
| AATTATTGGTCCAAGACTCC+AGG | - | chr4_3:63836136-63836155 | Msa0655290:CDS | 40.0% | |
| AAACAGACAAACACGTGTCA+TGG | + | chr4_3:63836268-63836287 | None:intergenic | 40.0% | |
| !! | AGAGCATCTGATACTTTTCC+TGG | - | chr4_3:63836621-63836640 | Msa0655290:intron | 40.0% |
| ACCACATCTCAACTAGATGT+CGG | + | chr4_3:63836650-63836669 | None:intergenic | 40.0% | |
| CTCTGTAGTTTGAATCGAAG+AGG | + | chr4_3:63836785-63836804 | None:intergenic | 40.0% | |
| CTCTTCGATTCAAACTACAG+AGG | - | chr4_3:63836783-63836802 | Msa0655290:intron | 40.0% | |
| TTCGATTCAAACTACAGAGG+AGG | - | chr4_3:63836786-63836805 | Msa0655290:intron | 40.0% | |
| !! | TTTCACCACAGAAGGTATTC+TGG | - | chr4_3:63836866-63836885 | Msa0655290:intron | 40.0% |
| ATGGTGTGAAGGACTATTCT+GGG | - | chr4_3:63836958-63836977 | Msa0655290:intron | 40.0% | |
| GGTCAAGCTAACATTCTATC+AGG | - | chr4_3:63837062-63837081 | Msa0655290:intron | 40.0% | |
| GGTATCTTAGTGAAATTGGC+AGG | - | chr4_3:63837125-63837144 | Msa0655290:intron | 40.0% | |
| CAGTGGTGATCCTAATAAGA+AGG | - | chr4_3:63837316-63837335 | Msa0655290:intron | 40.0% | |
| !! | TGAGTGGTAATGGCACAAAA+TGG | - | chr4_3:63837447-63837466 | Msa0655290:CDS | 40.0% |
| !! | GAGTGGTAATGGCACAAAAT+GGG | - | chr4_3:63837448-63837467 | Msa0655290:CDS | 40.0% |
| CGAACATGACTAATCCGATT+AGG | + | chr4_3:63837503-63837522 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAAGCTAA+AGG | - | chr4_3:63837602-63837621 | Msa0655290:intron | 40.0% | |
| CTACTCTCTTCTGATCCTGT+TGG | + | chr4_3:63835676-63835695 | None:intergenic | 45.0% | |
| !!! | TGCCATTTTGAAAGCAGTGG+AGG | - | chr4_3:63835699-63835718 | Msa0655290:CDS | 45.0% |
| ! | AAGGGTCTTGAATTGGTAGC+AGG | - | chr4_3:63835739-63835758 | Msa0655290:CDS | 45.0% |
| ! | AGGGTCTTGAATTGGTAGCA+GGG | - | chr4_3:63835740-63835759 | Msa0655290:CDS | 45.0% |
| GTAGCAGGGGTGAATGATTT+GGG | - | chr4_3:63835754-63835773 | Msa0655290:CDS | 45.0% | |
| CCACCTGGGAGTAAAGTAAT+TGG | + | chr4_3:63835826-63835845 | None:intergenic | 45.0% | |
| CCAATTACTTTACTCCCAGG+TGG | - | chr4_3:63835823-63835842 | Msa0655290:CDS | 45.0% | |
| TCACCACAATATTGCCACCT+GGG | + | chr4_3:63835840-63835859 | None:intergenic | 45.0% | |
| GTTTCTAACACCTGGAGTCT+TGG | + | chr4_3:63836149-63836168 | None:intergenic | 45.0% | |
| GTACTCAGGTTTCTAACACC+TGG | + | chr4_3:63836157-63836176 | None:intergenic | 45.0% | |
| ! | CACAAGGTGGTGTCCTTTTT+AGG | - | chr4_3:63836215-63836234 | Msa0655290:CDS | 45.0% |
| CGTGTAAGCCTAGCCTAAAA+AGG | + | chr4_3:63836231-63836250 | None:intergenic | 45.0% | |
| TTGGCACTTAACACTGCCAA+AGG | - | chr4_3:63836415-63836434 | Msa0655290:CDS | 45.0% | |
| ACCGACATCTAGTTGAGATG+TGG | - | chr4_3:63836646-63836665 | Msa0655290:intron | 45.0% | |
| ATGCAAGGTGGTAACTTCAG+TGG | - | chr4_3:63836705-63836724 | Msa0655290:intron | 45.0% | |
| GATTCAAACTACAGAGGAGG+AGG | - | chr4_3:63836789-63836808 | Msa0655290:intron | 45.0% | |
| !! | TCGTTGATTCCGCTAGAACT+CGG | - | chr4_3:63836820-63836839 | Msa0655290:intron | 45.0% |
| ! | GTTGTTGATCCGAGTTCTAG+CGG | + | chr4_3:63836832-63836851 | None:intergenic | 45.0% |
| TTCCTGCATTTCACCACAGA+AGG | - | chr4_3:63836858-63836877 | Msa0655290:intron | 45.0% | |
| TACCTTCTGTGGTGAAATGC+AGG | + | chr4_3:63836863-63836882 | None:intergenic | 45.0% | |
| CTGTACCAGAATACCTTCTG+TGG | + | chr4_3:63836874-63836893 | None:intergenic | 45.0% | |
| !! | GAAGGTATTCTGGTACAGCA+AGG | - | chr4_3:63836876-63836895 | Msa0655290:intron | 45.0% |
| CTTGGACAACACTCAACAGT+TGG | - | chr4_3:63836927-63836946 | Msa0655290:intron | 45.0% | |
| CAGAATAGTCCTTCACACCA+TGG | + | chr4_3:63836959-63836978 | None:intergenic | 45.0% | |
| CATGGTGTGAAGGACTATTC+TGG | - | chr4_3:63836957-63836976 | Msa0655290:intron | 45.0% | |
| TGGTGTGAAGGACTATTCTG+GGG | - | chr4_3:63836959-63836978 | Msa0655290:intron | 45.0% | |
| ! | CACTGATGTGGCGATTTTCT+CGG | - | chr4_3:63837016-63837035 | Msa0655290:intron | 45.0% |
| ACCTCTTAGCACAATACCAG+TGG | + | chr4_3:63837045-63837064 | None:intergenic | 45.0% | |
| GGTCTGCACCATATTCACTC+GGG | + | chr4_3:63835654-63835673 | None:intergenic | 50.0% | |
| GGGTCTGCACCATATTCACT+CGG | + | chr4_3:63835655-63835674 | None:intergenic | 50.0% | |
| GAATATGGTGCAGACCCAAC+AGG | - | chr4_3:63835658-63835677 | Msa0655290:CDS | 50.0% | |
| ! | GGGTCTTGAATTGGTAGCAG+GGG | - | chr4_3:63835741-63835760 | Msa0655290:CDS | 50.0% |
| GGTAGCAGGGGTGAATGATT+TGG | - | chr4_3:63835753-63835772 | Msa0655290:CDS | 50.0% | |
| ACTCCCAGGTGGCAATATTG+TGG | - | chr4_3:63835834-63835853 | Msa0655290:CDS | 50.0% | |
| CTCACCACAATATTGCCACC+TGG | + | chr4_3:63835841-63835860 | None:intergenic | 50.0% | |
| !! | GGTGGTGTCCTTTTTAGGCT+AGG | - | chr4_3:63836220-63836239 | Msa0655290:CDS | 50.0% |
| TCAACTAGATGTCGGTCACC+AGG | + | chr4_3:63836642-63836661 | None:intergenic | 50.0% | |
| GGACAACACTCAACAGTTGG+TGG | - | chr4_3:63836930-63836949 | Msa0655290:intron | 50.0% | |
| !! | TCAACAGTTGGTGGTGACCA+TGG | - | chr4_3:63836939-63836958 | Msa0655290:intron | 50.0% |
| CGACAATGCAGTCACTGATG+TGG | - | chr4_3:63837004-63837023 | Msa0655290:intron | 50.0% | |
| GCCACTGGTATTGTGCTAAG+AGG | - | chr4_3:63837041-63837060 | Msa0655290:intron | 50.0% | |
| AACAAAGCAGCAGGATTCGG+TGG | - | chr4_3:63837098-63837117 | Msa0655290:intron | 50.0% | |
| ATGGGCTTGAGATCAACAGC+TGG | - | chr4_3:63837413-63837432 | Msa0655290:CDS | 50.0% | |
| TGGGCTTGAGATCAACAGCT+GGG | - | chr4_3:63837414-63837433 | Msa0655290:CDS | 50.0% | |
| GCTGGGAAGTTAACTGTGAG+TGG | - | chr4_3:63837431-63837450 | Msa0655290:CDS | 50.0% | |
| TGGCTCCCCTTGAGCATAAA+AGG | + | chr4_3:63837531-63837550 | None:intergenic | 50.0% | |
| ! | GAAGCAGGTGGTGATGCCAA+AGG | + | chr4_3:63835519-63835538 | None:intergenic | 55.0% |
| ! | GCAGGGGTGAATGATTTGGG+AGG | - | chr4_3:63835757-63835776 | Msa0655290:CDS | 55.0% |
| ! | TGGTGGTGACCATGGTGTGA+AGG | - | chr4_3:63836947-63836966 | Msa0655290:intron | 55.0% |
| !! | GCAGCAGGATTCGGTGGTAT+AGG | - | chr4_3:63837104-63837123 | Msa0655290:intron | 55.0% |
| ! | GCGATTTTCTCGGCAGCCAC+TGG | - | chr4_3:63837026-63837045 | Msa0655290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 63835259 | 63837932 | 63835259 | ID=Msa0655290;Name=Msa0655290 |
| chr4_3 | mRNA | 63835259 | 63837932 | 63835259 | ID=Msa0655290-mRNA-1;Parent=Msa0655290;Name=Msa0655290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|1|1|3|280|480 |
| chr4_3 | exon | 63835259 | 63836588 | 63835259 | ID=Msa0655290-mRNA-1:exon:17972;Parent=Msa0655290-mRNA-1 |
| chr4_3 | exon | 63837336 | 63837557 | 63837336 | ID=Msa0655290-mRNA-1:exon:17971;Parent=Msa0655290-mRNA-1 |
| chr4_3 | exon | 63837637 | 63837932 | 63837637 | ID=Msa0655290-mRNA-1:exon:17970;Parent=Msa0655290-mRNA-1 |
| chr4_3 | five_prime_UTR | 63837808 | 63837932 | 63837808 | ID=Msa0655290-mRNA-1:five_prime_utr;Parent=Msa0655290-mRNA-1 |
| chr4_3 | CDS | 63837637 | 63837807 | 63837637 | ID=Msa0655290-mRNA-1:cds;Parent=Msa0655290-mRNA-1 |
| chr4_3 | CDS | 63837336 | 63837557 | 63837336 | ID=Msa0655290-mRNA-1:cds;Parent=Msa0655290-mRNA-1 |
| chr4_3 | CDS | 63835539 | 63836588 | 63835539 | ID=Msa0655290-mRNA-1:cds;Parent=Msa0655290-mRNA-1 |
| chr4_3 | three_prime_UTR | 63835259 | 63835538 | 63835259 | ID=Msa0655290-mRNA-1:three_prime_utr;Parent=Msa0655290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
