Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561960 | XP_013457385.1 | 95.417 | 480 | 22 | 0 | 1 | 480 | 1 | 480 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561960 | sp|O49432|QRT3_ARATH | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 5.57e-137 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561960 | A0A072UPZ7 | 95.417 | 480 | 22 | 0 | 1 | 480 | 1 | 480 | 0.0 | 920 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072370 | Msa0561960 | 0.800171 | 1.633151e-48 | -8.615850e-47 |
| Msa0110970 | Msa0561960 | 0.803023 | 4.248061e-49 | -8.615850e-47 |
| Msa0561960 | Msa0593420 | 0.840927 | 6.473292e-58 | -8.615850e-47 |
| Msa0561960 | Msa0655290 | 0.856400 | 3.300622e-62 | -8.615850e-47 |
| Msa0561960 | Msa0699060 | 0.871003 | 9.515618e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561960 | MtrunA17_Chr4g0052711 | 95.417 | 480 | 22 | 0 | 1 | 480 | 1 | 480 | 0.0 | 920 |
| Msa0561960 | MtrunA17_Chr2g0297001 | 66.802 | 491 | 149 | 6 | 1 | 480 | 4 | 491 | 0.0 | 608 |
| Msa0561960 | MtrunA17_Chr2g0296981 | 48.551 | 414 | 194 | 6 | 60 | 468 | 82 | 481 | 1.57e-134 | 397 |
| Msa0561960 | MtrunA17_Chr6g0455291 | 48.687 | 419 | 189 | 7 | 67 | 480 | 93 | 490 | 5.45e-128 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561960 | AT4G20040.1 | 59.598 | 448 | 165 | 5 | 37 | 474 | 36 | 477 | 0.0 | 534 |
| Msa0561960 | AT4G20050.7 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 5.66e-138 | 406 |
| Msa0561960 | AT4G20050.6 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 5.66e-138 | 406 |
| Msa0561960 | AT4G20050.2 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 5.66e-138 | 406 |
| Msa0561960 | AT4G20050.1 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 5.66e-138 | 406 |
| Msa0561960 | AT4G20050.5 | 50.585 | 427 | 184 | 6 | 60 | 480 | 99 | 504 | 1.28e-137 | 406 |
| Msa0561960 | AT4G20050.4 | 50.000 | 402 | 174 | 6 | 85 | 480 | 1 | 381 | 3.10e-128 | 377 |
| Msa0561960 | AT4G20050.3 | 50.000 | 402 | 174 | 6 | 85 | 480 | 1 | 381 | 3.10e-128 | 377 |
Find 119 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATGTGCTACAAATTT+TGG | 0.146774 | 4_1:-61623661 | None:intergenic |
| ACAATTGGAACCTTCTTATT+AGG | 0.182192 | 4_1:-61623439 | None:intergenic |
| GGCTGTTAAAGGTCAAATTT+TGG | 0.195856 | 4_1:+61623381 | Msa0561960:CDS |
| TGGCTCCCCTTGAGCATAAA+AGG | 0.234400 | 4_1:-61623641 | None:intergenic |
| GTCACTAATTGTCTATTTCT+TGG | 0.242965 | 4_1:+61623337 | Msa0561960:CDS |
| GTCCTTCAATCCAGATAAAA+AGG | 0.254800 | 4_1:+61621703 | Msa0561960:five_prime_UTR |
| TAGAATTGACAACTGTTATA+TGG | 0.260121 | 4_1:+61623273 | Msa0561960:CDS |
| ATGTGCATTATTAGAGTAAC+AGG | 0.287505 | 4_1:+61622053 | Msa0561960:intron |
| TCACTAATTGTCTATTTCTT+GGG | 0.292562 | 4_1:+61623338 | Msa0561960:CDS |
| CCACCTGGGAGTAAAGTAAT+TGG | 0.305752 | 4_1:-61622256 | None:intergenic |
| CATGGTGAGAAGGACTATTC+TGG | 0.314832 | 4_1:+61623070 | Msa0561960:CDS |
| GGTCAAGCTAACATTCTATC+AGG | 0.316674 | 4_1:+61623175 | Msa0561960:CDS |
| TATAGGTATCTTAGTGAAAT+TGG | 0.326605 | 4_1:+61623234 | Msa0561960:CDS |
| TGAGTGGTAATGGCACAAAA+TGG | 0.327400 | 4_1:+61623560 | Msa0561960:CDS |
| GGTAGCAGGGGTGAGTGATT+TGG | 0.327485 | 4_1:+61622186 | Msa0561960:CDS |
| AGTATGATTGAATAGGTAAA+AGG | 0.332001 | 4_1:+61622701 | Msa0561960:intron |
| GTAGCAGGGGTGAGTGATTT+GGG | 0.334214 | 4_1:+61622187 | Msa0561960:CDS |
| GATGCATTTAAGTTGCAAAA+TGG | 0.347347 | 4_1:+61622154 | Msa0561960:CDS |
| ATCCTCCACTGCTTTCAAAA+TGG | 0.349501 | 4_1:-61622134 | None:intergenic |
| TTTCACCACAGAAGGTATTC+TGG | 0.360872 | 4_1:+61622979 | Msa0561960:CDS |
| GTATTGTACCCGAGTGAATA+TGG | 0.364196 | 4_1:+61622076 | Msa0561960:CDS |
| GAGACATCCTCTTTGATTCA+AGG | 0.389005 | 4_1:+61622888 | Msa0561960:CDS |
| TTAGTGACATGAACTTGAAC+AGG | 0.390498 | 4_1:-61623322 | None:intergenic |
| GCAGCAGGATTCGGTGGTAT+AGG | 0.397151 | 4_1:+61623217 | Msa0561960:CDS |
| GAATTTATATAGTTTATCAT+TGG | 0.398984 | 4_1:-61623996 | None:intergenic |
| CGAACATGACTAATCCGATT+AGG | 0.413954 | 4_1:-61623613 | None:intergenic |
| AACTGTTATATGGATTATAC+TGG | 0.421131 | 4_1:+61623283 | Msa0561960:CDS |
| TGACCATCTAGATTTACAAT+TGG | 0.425857 | 4_1:-61623454 | None:intergenic |
| TACTCTCTTCTGATCCTGTT+GGG | 0.429225 | 4_1:-61622105 | None:intergenic |
| GTTGCAAAATGGTCTTGAAC+TGG | 0.437300 | 4_1:+61622165 | Msa0561960:CDS |
| GGAAGAAGCAGTTGTTGATC+CGG | 0.437558 | 4_1:-61622952 | None:intergenic |
| GGAATTTATGCACAAATCAA+TGG | 0.446808 | 4_1:+61622839 | Msa0561960:CDS |
| CAACTTTATTAGCTTTATGT+AGG | 0.446918 | 4_1:+61623907 | Msa0561960:three_prime_UTR |
| AAGTTAACGGTGAGTGGTAA+TGG | 0.457983 | 4_1:+61623550 | Msa0561960:CDS |
| TATAACAAAGCAGCAGGATT+CGG | 0.458956 | 4_1:+61623208 | Msa0561960:CDS |
| AATGGTCTTGAACTGGTAGC+AGG | 0.464254 | 4_1:+61622172 | Msa0561960:CDS |
| TGAGAAAGAAGCTAAAGGTT+TGG | 0.469132 | 4_1:+61623720 | Msa0561960:CDS |
| TACCTTCTGTGGTGAAATGC+AGG | 0.474883 | 4_1:-61622973 | None:intergenic |
| GTTCCAATTGTAAATCTAGA+TGG | 0.476983 | 4_1:+61623451 | Msa0561960:CDS |
| CACTAATTGTCTATTTCTTG+GGG | 0.486959 | 4_1:+61623339 | Msa0561960:CDS |
| CTTGGACAACACTCAACAGT+TGG | 0.494542 | 4_1:+61623040 | Msa0561960:CDS |
| GCAACAACTAGCTAGTCCTT+TGG | 0.495275 | 4_1:+61621933 | Msa0561960:CDS |
| ATGGTGAGAAGGACTATTCT+GGG | 0.497205 | 4_1:+61623071 | Msa0561960:CDS |
| GGTGTTATTATTGATTTGCA+AGG | 0.498421 | 4_1:+61622211 | Msa0561960:CDS |
| CTCACCACAACATTGCCACC+TGG | 0.500478 | 4_1:-61622271 | None:intergenic |
| ATCAACAGCTGGGAAGTTAA+CGG | 0.507549 | 4_1:+61623537 | Msa0561960:CDS |
| TCAACTAGATGCCGGTCACC+AGG | 0.510520 | 4_1:-61622752 | None:intergenic |
| CTACTCTCTTCTGATCCTGT+TGG | 0.514585 | 4_1:-61622106 | None:intergenic |
| CATTGTTATAACAAAGCAGC+AGG | 0.517528 | 4_1:+61623202 | Msa0561960:CDS |
| GAATATGGTGCAGACCCAAC+AGG | 0.517606 | 4_1:+61622091 | Msa0561960:CDS |
| TCGTTGATTCCGCTAGAACC+CGG | 0.520742 | 4_1:+61622933 | Msa0561960:CDS |
| GAGTGGTAATGGCACAAAAT+GGG | 0.522677 | 4_1:+61623561 | Msa0561960:CDS |
| TAGAAACAATGTGAATGGTA+TGG | 0.524399 | 4_1:+61623507 | Msa0561960:CDS |
| GCCACTGGTATTGTGCTAAG+AGG | 0.526724 | 4_1:+61623154 | Msa0561960:CDS |
| ATCTTTGTTTGTGAAGAAGT+AGG | 0.527554 | 4_1:-61621964 | None:intergenic |
| GTTATTATTGATTTGCAAGG+TGG | 0.531694 | 4_1:+61622214 | Msa0561960:CDS |
| TACTTCTTCACAAACAAAGA+TGG | 0.533925 | 4_1:+61621966 | Msa0561960:CDS |
| TTCCTGCATTTCACCACAGA+AGG | 0.538916 | 4_1:+61622971 | Msa0561960:CDS |
| GGTATCTTAGTGAAATTGGC+AGG | 0.545694 | 4_1:+61623238 | Msa0561960:CDS |
| AACAATAAGAAAGAAGCAAG+GGG | 0.545806 | 4_1:+61623758 | Msa0561960:exon |
| CTCTGTACCTTGAATCAAAG+AGG | 0.549531 | 4_1:-61622895 | None:intergenic |
| ATTTAGTAATGTTGATCAAG+TGG | 0.550162 | 4_1:+61623477 | Msa0561960:CDS |
| GGGTCTGCACCATATTCACT+CGG | 0.550559 | 4_1:-61622085 | None:intergenic |
| ATGGTCTTGAACTGGTAGCA+GGG | 0.550658 | 4_1:+61622173 | Msa0561960:CDS |
| AAAAGTATCAGATGCTCTCA+AGG | 0.551314 | 4_1:-61622729 | None:intergenic |
| CAGTGGTGATCCTAATAAGA+AGG | 0.551347 | 4_1:+61623429 | Msa0561960:CDS |
| GATTCAAGGTACAGAGGAGG+AGG | 0.551850 | 4_1:+61622902 | Msa0561960:CDS |
| GTCAAGCTAACATTCTATCA+GGG | 0.557104 | 4_1:+61623176 | Msa0561960:CDS |
| GAGAGTGAGAAAGAAGCTAA+AGG | 0.558237 | 4_1:+61623715 | Msa0561960:CDS |
| ATTGATAGAAACAATGTGAA+TGG | 0.559517 | 4_1:+61623502 | Msa0561960:CDS |
| ATGGGCTTGAGATCAACAGC+TGG | 0.563909 | 4_1:+61623526 | Msa0561960:CDS |
| ACTCCCAGGTGGCAATGTTG+TGG | 0.568111 | 4_1:+61622267 | Msa0561960:CDS |
| GAAGAAGCAGTTGTTGATCC+GGG | 0.568923 | 4_1:-61622951 | None:intergenic |
| GTCTGATAATGTTGTAGTTG+TGG | 0.571268 | 4_1:+61623693 | Msa0561960:CDS |
| TCACCACAACATTGCCACCT+GGG | 0.572046 | 4_1:-61622270 | None:intergenic |
| TTGAAGGACTTGAAGTGAAG+GGG | 0.574950 | 4_1:-61621689 | None:intergenic |
| GAACAATAAGAAAGAAGCAA+GGG | 0.576277 | 4_1:+61623757 | Msa0561960:exon |
| AGAAACAATGTGAATGGTAT+GGG | 0.578616 | 4_1:+61623508 | Msa0561960:CDS |
| AAACCAATTACTTTACTCCC+AGG | 0.579529 | 4_1:+61622253 | Msa0561960:CDS |
| GGACAACACTCAACAGTTGG+TGG | 0.579683 | 4_1:+61623043 | Msa0561960:CDS |
| ATTGAAGGACTTGAAGTGAA+GGG | 0.583367 | 4_1:-61621690 | None:intergenic |
| ATGATTGAATAGGTAAAAGG+AGG | 0.583775 | 4_1:+61622704 | Msa0561960:intron |
| GATTGAAGGACTTGAAGTGA+AGG | 0.583794 | 4_1:-61621691 | None:intergenic |
| TGTACGTCAAGTCATCAAGT+AGG | 0.592186 | 4_1:-61624023 | None:intergenic |
| GTTGTTGATCCGGGTTCTAG+CGG | 0.594924 | 4_1:-61622942 | None:intergenic |
| ACCACATCTCAACTAGATGC+CGG | 0.597862 | 4_1:-61622760 | None:intergenic |
| GCTGGGAAGTTAACGGTGAG+TGG | 0.597943 | 4_1:+61623544 | Msa0561960:CDS |
| TACAACATTATCAGACACAT+TGG | 0.601963 | 4_1:-61623686 | None:intergenic |
| ATGCAAGGTGGTAACTTCAG+TGG | 0.602840 | 4_1:+61622818 | Msa0561960:CDS |
| AACAAAGCAGCAGGATTCGG+TGG | 0.608346 | 4_1:+61623211 | Msa0561960:CDS |
| CTCTTTGATTCAAGGTACAG+AGG | 0.610840 | 4_1:+61622896 | Msa0561960:CDS |
| CGACAATGCAGTCACTGATG+TGG | 0.611847 | 4_1:+61623117 | Msa0561960:CDS |
| GGATTATACTGGTATAGTAA+CGG | 0.620931 | 4_1:+61623294 | Msa0561960:CDS |
| TGGTCTTGAACTGGTAGCAG+GGG | 0.621961 | 4_1:+61622174 | Msa0561960:CDS |
| GAAGTAGGTGGTGATGCCAA+AGG | 0.630566 | 4_1:-61621949 | None:intergenic |
| GAGACAAAAGAATATATGCA+AGG | 0.632276 | 4_1:+61622803 | Msa0561960:CDS |
| CTGTACCAGAATACCTTCTG+TGG | 0.634222 | 4_1:-61622984 | None:intergenic |
| ACCGGCATCTAGTTGAGATG+TGG | 0.636690 | 4_1:+61622759 | Msa0561960:CDS |
| TGGTGGTGACCATGGTGAGA+AGG | 0.638340 | 4_1:+61623060 | Msa0561960:CDS |
| TGGGCTTGAGATCAACAGCT+GGG | 0.640163 | 4_1:+61623527 | Msa0561960:CDS |
| TCAACAGTTGGTGGTGACCA+TGG | 0.642439 | 4_1:+61623052 | Msa0561960:CDS |
| TGAACAATAAGAAAGAAGCA+AGG | 0.648792 | 4_1:+61623756 | Msa0561960:exon |
| ACCTCTTAGCACAATACCAG+TGG | 0.650646 | 4_1:-61623155 | None:intergenic |
| GCAGGGGTGAGTGATTTGGG+AGG | 0.656097 | 4_1:+61622190 | Msa0561960:CDS |
| ATAGTGGATAATATGTTCAG+TGG | 0.656109 | 4_1:+61623412 | Msa0561960:CDS |
| TTTGATTCAAGGTACAGAGG+AGG | 0.667090 | 4_1:+61622899 | Msa0561960:CDS |
| AGAACAAAATGAGTGTGTGA+TGG | 0.669420 | 4_1:-61621747 | None:intergenic |
| TCAAGCTAACATTCTATCAG+GGG | 0.670436 | 4_1:+61623177 | Msa0561960:CDS |
| GGTCTGCACCATATTCACTC+GGG | 0.672480 | 4_1:-61622084 | None:intergenic |
| CAGAATAGTCCTTCTCACCA+TGG | 0.673192 | 4_1:-61623069 | None:intergenic |
| CCAATTACTTTACTCCCAGG+TGG | 0.681627 | 4_1:+61622256 | Msa0561960:CDS |
| GAAGGTATTCTGGTACAGCA+AGG | 0.682518 | 4_1:+61622989 | Msa0561960:CDS |
| TTTGTTTGTGAAGAAGTAGG+TGG | 0.693568 | 4_1:-61621961 | None:intergenic |
| ACAAAAGAATATATGCAAGG+TGG | 0.694925 | 4_1:+61622806 | Msa0561960:CDS |
| TGGTGAGAAGGACTATTCTG+GGG | 0.710714 | 4_1:+61623072 | Msa0561960:CDS |
| TAGTGACATGAACTTGAACA+GGG | 0.715958 | 4_1:-61623321 | None:intergenic |
| TGTGCATTATTAGAGTAACA+GGG | 0.739578 | 4_1:+61622054 | Msa0561960:intron |
| ACAATAAGAAAGAAGCAAGG+GGG | 0.749795 | 4_1:+61623759 | Msa0561960:exon |
| TTAAAGTATGAAATTCTCAG+TGG | 0.757215 | 4_1:+61621810 | Msa0561960:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAGATATATAAATTTAT+GGG | - | chr4_1:61622608-61622627 | None:intergenic | 10.0% |
| !! | TTCAAAGATATATAAATTTA+TGG | - | chr4_1:61622609-61622628 | None:intergenic | 10.0% |
| !! | TCAAAGATATATAAATTTAT+GGG | - | chr4_1:61622608-61622627 | None:intergenic | 10.0% |
| !! | TTCAAAGATATATAAATTTA+TGG | - | chr4_1:61622609-61622628 | None:intergenic | 10.0% |
| !!! | ATATTGAAACAGATTTTTAA+TGG | - | chr4_1:61621780-61621799 | None:intergenic | 15.0% |
| !! | GAATTTATATAGTTTATCAT+TGG | - | chr4_1:61623999-61624018 | None:intergenic | 15.0% |
| !!! | ATATTGAAACAGATTTTTAA+TGG | - | chr4_1:61621780-61621799 | None:intergenic | 15.0% |
| !! | GAATTTATATAGTTTATCAT+TGG | - | chr4_1:61623999-61624018 | None:intergenic | 15.0% |
| !! | AACTGCAAAATGAAAATAAA+TGG | - | chr4_1:61622415-61622434 | None:intergenic | 20.0% |
| !! | ATTTAAAAATTTCTTGGGAA+GGG | - | chr4_1:61622449-61622468 | None:intergenic | 20.0% |
| !! | TATTTAAAAATTTCTTGGGA+AGG | - | chr4_1:61622450-61622469 | None:intergenic | 20.0% |
| !! | CAATTATCCTCTAAATTTAT+TGG | - | chr4_1:61622515-61622534 | None:intergenic | 20.0% |
| !! | AAGATATATAAATTTATGGG+TGG | - | chr4_1:61622605-61622624 | None:intergenic | 20.0% |
| !!! | TATGAAAAGTATGATTGAAT+AGG | + | chr4_1:61622694-61622713 | Msa0561960:intron | 20.0% |
| !!! | GGATGCTAATATTTTAATAA+AGG | + | chr4_1:61623360-61623379 | Msa0561960:CDS | 20.0% |
| !!! | ATTTTAATAAAGGCTGTTAA+AGG | + | chr4_1:61623370-61623389 | Msa0561960:CDS | 20.0% |
| !! | AACTGCAAAATGAAAATAAA+TGG | - | chr4_1:61622415-61622434 | None:intergenic | 20.0% |
| !! | ATTTAAAAATTTCTTGGGAA+GGG | - | chr4_1:61622449-61622468 | None:intergenic | 20.0% |
| !! | TATTTAAAAATTTCTTGGGA+AGG | - | chr4_1:61622450-61622469 | None:intergenic | 20.0% |
| !! | CAATTATCCTCTAAATTTAT+TGG | - | chr4_1:61622515-61622534 | None:intergenic | 20.0% |
| !! | AAGATATATAAATTTATGGG+TGG | - | chr4_1:61622605-61622624 | None:intergenic | 20.0% |
| !!! | TATGAAAAGTATGATTGAAT+AGG | + | chr4_1:61622694-61622713 | Msa0561960:intron | 20.0% |
| !!! | GGATGCTAATATTTTAATAA+AGG | + | chr4_1:61623360-61623379 | Msa0561960:CDS | 20.0% |
| !!! | ATTTTAATAAAGGCTGTTAA+AGG | + | chr4_1:61623370-61623389 | Msa0561960:CDS | 20.0% |
| ! | TTAAAGTATGAAATTCTCAG+TGG | + | chr4_1:61621810-61621829 | Msa0561960:exon | 25.0% |
| !!! | GGTGTATTTTGTTTTATCAT+TGG | + | chr4_1:61621831-61621850 | Msa0561960:CDS | 25.0% |
| ! | GATTCATCCAATAAATTTAG+AGG | + | chr4_1:61622505-61622524 | Msa0561960:intron | 25.0% |
| !!! | AAATGTTTTTTGCTGCATTT+AGG | - | chr4_1:61622539-61622558 | None:intergenic | 25.0% |
| ! | TACATGTTAAGATGAAAAGT+AGG | - | chr4_1:61622654-61622673 | None:intergenic | 25.0% |
| ! | AGTATGATTGAATAGGTAAA+AGG | + | chr4_1:61622701-61622720 | Msa0561960:intron | 25.0% |
| !!! | TTCATATCAAGTTGTTTTCT+TGG | + | chr4_1:61623022-61623041 | Msa0561960:CDS | 25.0% |
| ! | TATAGGTATCTTAGTGAAAT+TGG | + | chr4_1:61623234-61623253 | Msa0561960:CDS | 25.0% |
| ! | TAGAATTGACAACTGTTATA+TGG | + | chr4_1:61623273-61623292 | Msa0561960:CDS | 25.0% |
| !! | AACTGTTATATGGATTATAC+TGG | + | chr4_1:61623283-61623302 | Msa0561960:CDS | 25.0% |
| !! | TCACTAATTGTCTATTTCTT+GGG | + | chr4_1:61623338-61623357 | Msa0561960:CDS | 25.0% |
| ! | ATTTAGTAATGTTGATCAAG+TGG | + | chr4_1:61623477-61623496 | Msa0561960:CDS | 25.0% |
| ! | ATTGATAGAAACAATGTGAA+TGG | + | chr4_1:61623502-61623521 | Msa0561960:CDS | 25.0% |
| !!! | CAACTTTATTAGCTTTATGT+AGG | + | chr4_1:61623907-61623926 | Msa0561960:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGTGATTACAGGTT+CGG | - | chr4_1:61623944-61623963 | None:intergenic | 25.0% |
| ! | TTAAAGTATGAAATTCTCAG+TGG | + | chr4_1:61621810-61621829 | Msa0561960:exon | 25.0% |
| !!! | GGTGTATTTTGTTTTATCAT+TGG | + | chr4_1:61621831-61621850 | Msa0561960:CDS | 25.0% |
| ! | GATTCATCCAATAAATTTAG+AGG | + | chr4_1:61622505-61622524 | Msa0561960:intron | 25.0% |
| !!! | AAATGTTTTTTGCTGCATTT+AGG | - | chr4_1:61622539-61622558 | None:intergenic | 25.0% |
| ! | TACATGTTAAGATGAAAAGT+AGG | - | chr4_1:61622654-61622673 | None:intergenic | 25.0% |
| ! | AGTATGATTGAATAGGTAAA+AGG | + | chr4_1:61622701-61622720 | Msa0561960:intron | 25.0% |
| !!! | TTCATATCAAGTTGTTTTCT+TGG | + | chr4_1:61623022-61623041 | Msa0561960:CDS | 25.0% |
| ! | TATAGGTATCTTAGTGAAAT+TGG | + | chr4_1:61623234-61623253 | Msa0561960:CDS | 25.0% |
| ! | TAGAATTGACAACTGTTATA+TGG | + | chr4_1:61623273-61623292 | Msa0561960:CDS | 25.0% |
| !! | AACTGTTATATGGATTATAC+TGG | + | chr4_1:61623283-61623302 | Msa0561960:CDS | 25.0% |
| !! | TCACTAATTGTCTATTTCTT+GGG | + | chr4_1:61623338-61623357 | Msa0561960:CDS | 25.0% |
| ! | ATTTAGTAATGTTGATCAAG+TGG | + | chr4_1:61623477-61623496 | Msa0561960:CDS | 25.0% |
| ! | ATTGATAGAAACAATGTGAA+TGG | + | chr4_1:61623502-61623521 | Msa0561960:CDS | 25.0% |
| !!! | CAACTTTATTAGCTTTATGT+AGG | + | chr4_1:61623907-61623926 | Msa0561960:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGTGATTACAGGTT+CGG | - | chr4_1:61623944-61623963 | None:intergenic | 25.0% |
| ! | ATCCTTTTTATCTGGATTGA+AGG | - | chr4_1:61621708-61621727 | None:intergenic | 30.0% |
| ! | ACAACTGTATCCTTTTTATC+TGG | - | chr4_1:61621716-61621735 | None:intergenic | 30.0% |
| ! | ATCTTTGTTTGTGAAGAAGT+AGG | - | chr4_1:61621967-61621986 | None:intergenic | 30.0% |
| TACTTCTTCACAAACAAAGA+TGG | + | chr4_1:61621966-61621985 | Msa0561960:CDS | 30.0% | |
| ATGTGCATTATTAGAGTAAC+AGG | + | chr4_1:61622053-61622072 | Msa0561960:intron | 30.0% | |
| TGTGCATTATTAGAGTAACA+GGG | + | chr4_1:61622054-61622073 | Msa0561960:intron | 30.0% | |
| !! | GATGCATTTAAGTTGCAAAA+TGG | + | chr4_1:61622154-61622173 | Msa0561960:CDS | 30.0% |
| !! | GGTGTTATTATTGATTTGCA+AGG | + | chr4_1:61622211-61622230 | Msa0561960:CDS | 30.0% |
| !! | GTTATTATTGATTTGCAAGG+TGG | + | chr4_1:61622214-61622233 | Msa0561960:CDS | 30.0% |
| TCAAGAGCAAAAGACTATTA+AGG | + | chr4_1:61622483-61622502 | Msa0561960:intron | 30.0% | |
| ATGCAGCAAAAAACATTTAG+AGG | + | chr4_1:61622541-61622560 | Msa0561960:intron | 30.0% | |
| ACTTGAGTAGAAAACTAACT+TGG | - | chr4_1:61622569-61622588 | None:intergenic | 30.0% | |
| ATGATTGAATAGGTAAAAGG+AGG | + | chr4_1:61622704-61622723 | Msa0561960:intron | 30.0% | |
| ! | TTCTTTTGTCTCAAGTTTCT+TGG | - | chr4_1:61622795-61622814 | None:intergenic | 30.0% |
| GAGACAAAAGAATATATGCA+AGG | + | chr4_1:61622803-61622822 | Msa0561960:CDS | 30.0% | |
| ACAAAAGAATATATGCAAGG+TGG | + | chr4_1:61622806-61622825 | Msa0561960:CDS | 30.0% | |
| GGAATTTATGCACAAATCAA+TGG | + | chr4_1:61622839-61622858 | Msa0561960:CDS | 30.0% | |
| GGATTATACTGGTATAGTAA+CGG | + | chr4_1:61623294-61623313 | Msa0561960:CDS | 30.0% | |
| ! | GTCACTAATTGTCTATTTCT+TGG | + | chr4_1:61623337-61623356 | Msa0561960:CDS | 30.0% |
| ! | CACTAATTGTCTATTTCTTG+GGG | + | chr4_1:61623339-61623358 | Msa0561960:CDS | 30.0% |
| ! | GCTGTTAAAGGTCAAATTTT+GGG | + | chr4_1:61623382-61623401 | Msa0561960:CDS | 30.0% |
| !!! | AATTTTGGGTTTGAACATAG+TGG | + | chr4_1:61623396-61623415 | Msa0561960:CDS | 30.0% |
| !! | ATAGTGGATAATATGTTCAG+TGG | + | chr4_1:61623412-61623431 | Msa0561960:CDS | 30.0% |
| ACAATTGGAACCTTCTTATT+AGG | - | chr4_1:61623442-61623461 | None:intergenic | 30.0% | |
| GTTCCAATTGTAAATCTAGA+TGG | + | chr4_1:61623451-61623470 | Msa0561960:CDS | 30.0% | |
| TGACCATCTAGATTTACAAT+TGG | - | chr4_1:61623457-61623476 | None:intergenic | 30.0% | |
| TAGAAACAATGTGAATGGTA+TGG | + | chr4_1:61623507-61623526 | Msa0561960:CDS | 30.0% | |
| AGAAACAATGTGAATGGTAT+GGG | + | chr4_1:61623508-61623527 | Msa0561960:CDS | 30.0% | |
| !! | AGCTGATTTTTCATCAGTTT+TGG | + | chr4_1:61623585-61623604 | Msa0561960:CDS | 30.0% |
| !! | CAGTTTTGGTATTTCCTAAT+CGG | + | chr4_1:61623599-61623618 | Msa0561960:CDS | 30.0% |
| ! | GATATTCCTTTTATGCTCAA+GGG | + | chr4_1:61623635-61623654 | Msa0561960:CDS | 30.0% |
| ! | ATATTCCTTTTATGCTCAAG+GGG | + | chr4_1:61623636-61623655 | Msa0561960:CDS | 30.0% |
| ! | ACAGAATGTGCTACAAATTT+TGG | - | chr4_1:61623664-61623683 | None:intergenic | 30.0% |
| TACAACATTATCAGACACAT+TGG | - | chr4_1:61623689-61623708 | None:intergenic | 30.0% | |
| TGAACAATAAGAAAGAAGCA+AGG | + | chr4_1:61623756-61623775 | Msa0561960:exon | 30.0% | |
| GAACAATAAGAAAGAAGCAA+GGG | + | chr4_1:61623757-61623776 | Msa0561960:exon | 30.0% | |
| AACAATAAGAAAGAAGCAAG+GGG | + | chr4_1:61623758-61623777 | Msa0561960:exon | 30.0% | |
| !!! | CAGCTTTTTTTTGTGATTAC+AGG | - | chr4_1:61623949-61623968 | None:intergenic | 30.0% |
| ! | ATCCTTTTTATCTGGATTGA+AGG | - | chr4_1:61621708-61621727 | None:intergenic | 30.0% |
| ! | ACAACTGTATCCTTTTTATC+TGG | - | chr4_1:61621716-61621735 | None:intergenic | 30.0% |
| ! | ATCTTTGTTTGTGAAGAAGT+AGG | - | chr4_1:61621967-61621986 | None:intergenic | 30.0% |
| TACTTCTTCACAAACAAAGA+TGG | + | chr4_1:61621966-61621985 | Msa0561960:CDS | 30.0% | |
| ATGTGCATTATTAGAGTAAC+AGG | + | chr4_1:61622053-61622072 | Msa0561960:intron | 30.0% | |
| TGTGCATTATTAGAGTAACA+GGG | + | chr4_1:61622054-61622073 | Msa0561960:intron | 30.0% | |
| !! | GATGCATTTAAGTTGCAAAA+TGG | + | chr4_1:61622154-61622173 | Msa0561960:CDS | 30.0% |
| !! | GGTGTTATTATTGATTTGCA+AGG | + | chr4_1:61622211-61622230 | Msa0561960:CDS | 30.0% |
| !! | GTTATTATTGATTTGCAAGG+TGG | + | chr4_1:61622214-61622233 | Msa0561960:CDS | 30.0% |
| TCAAGAGCAAAAGACTATTA+AGG | + | chr4_1:61622483-61622502 | Msa0561960:intron | 30.0% | |
| ATGCAGCAAAAAACATTTAG+AGG | + | chr4_1:61622541-61622560 | Msa0561960:intron | 30.0% | |
| ACTTGAGTAGAAAACTAACT+TGG | - | chr4_1:61622569-61622588 | None:intergenic | 30.0% | |
| ATGATTGAATAGGTAAAAGG+AGG | + | chr4_1:61622704-61622723 | Msa0561960:intron | 30.0% | |
| ! | TTCTTTTGTCTCAAGTTTCT+TGG | - | chr4_1:61622795-61622814 | None:intergenic | 30.0% |
| GAGACAAAAGAATATATGCA+AGG | + | chr4_1:61622803-61622822 | Msa0561960:CDS | 30.0% | |
| ACAAAAGAATATATGCAAGG+TGG | + | chr4_1:61622806-61622825 | Msa0561960:CDS | 30.0% | |
| GGAATTTATGCACAAATCAA+TGG | + | chr4_1:61622839-61622858 | Msa0561960:CDS | 30.0% | |
| GGATTATACTGGTATAGTAA+CGG | + | chr4_1:61623294-61623313 | Msa0561960:CDS | 30.0% | |
| ! | GTCACTAATTGTCTATTTCT+TGG | + | chr4_1:61623337-61623356 | Msa0561960:CDS | 30.0% |
| ! | CACTAATTGTCTATTTCTTG+GGG | + | chr4_1:61623339-61623358 | Msa0561960:CDS | 30.0% |
| ! | GCTGTTAAAGGTCAAATTTT+GGG | + | chr4_1:61623382-61623401 | Msa0561960:CDS | 30.0% |
| !!! | AATTTTGGGTTTGAACATAG+TGG | + | chr4_1:61623396-61623415 | Msa0561960:CDS | 30.0% |
| !! | ATAGTGGATAATATGTTCAG+TGG | + | chr4_1:61623412-61623431 | Msa0561960:CDS | 30.0% |
| ACAATTGGAACCTTCTTATT+AGG | - | chr4_1:61623442-61623461 | None:intergenic | 30.0% | |
| GTTCCAATTGTAAATCTAGA+TGG | + | chr4_1:61623451-61623470 | Msa0561960:CDS | 30.0% | |
| TGACCATCTAGATTTACAAT+TGG | - | chr4_1:61623457-61623476 | None:intergenic | 30.0% | |
| TAGAAACAATGTGAATGGTA+TGG | + | chr4_1:61623507-61623526 | Msa0561960:CDS | 30.0% | |
| AGAAACAATGTGAATGGTAT+GGG | + | chr4_1:61623508-61623527 | Msa0561960:CDS | 30.0% | |
| !! | AGCTGATTTTTCATCAGTTT+TGG | + | chr4_1:61623585-61623604 | Msa0561960:CDS | 30.0% |
| !! | CAGTTTTGGTATTTCCTAAT+CGG | + | chr4_1:61623599-61623618 | Msa0561960:CDS | 30.0% |
| ! | GATATTCCTTTTATGCTCAA+GGG | + | chr4_1:61623635-61623654 | Msa0561960:CDS | 30.0% |
| ! | ATATTCCTTTTATGCTCAAG+GGG | + | chr4_1:61623636-61623655 | Msa0561960:CDS | 30.0% |
| ! | ACAGAATGTGCTACAAATTT+TGG | - | chr4_1:61623664-61623683 | None:intergenic | 30.0% |
| TACAACATTATCAGACACAT+TGG | - | chr4_1:61623689-61623708 | None:intergenic | 30.0% | |
| TGAACAATAAGAAAGAAGCA+AGG | + | chr4_1:61623756-61623775 | Msa0561960:exon | 30.0% | |
| GAACAATAAGAAAGAAGCAA+GGG | + | chr4_1:61623757-61623776 | Msa0561960:exon | 30.0% | |
| AACAATAAGAAAGAAGCAAG+GGG | + | chr4_1:61623758-61623777 | Msa0561960:exon | 30.0% | |
| !!! | CAGCTTTTTTTTGTGATTAC+AGG | - | chr4_1:61623949-61623968 | None:intergenic | 30.0% |
| GTCCTTCAATCCAGATAAAA+AGG | + | chr4_1:61621703-61621722 | Msa0561960:five_prime_UTR | 35.0% | |
| AGAACAAAATGAGTGTGTGA+TGG | - | chr4_1:61621750-61621769 | None:intergenic | 35.0% | |
| ! | TTCTGATAGCTTTTGTTCTC+TGG | - | chr4_1:61621896-61621915 | None:intergenic | 35.0% |
| TTTGTTTGTGAAGAAGTAGG+TGG | - | chr4_1:61621964-61621983 | None:intergenic | 35.0% | |
| AAACCAATTACTTTACTCCC+AGG | + | chr4_1:61622253-61622272 | Msa0561960:CDS | 35.0% | |
| !! | AAAAGTATCAGATGCTCTCA+AGG | - | chr4_1:61622732-61622751 | None:intergenic | 35.0% |
| GTCAAGCTAACATTCTATCA+GGG | + | chr4_1:61623176-61623195 | Msa0561960:CDS | 35.0% | |
| TCAAGCTAACATTCTATCAG+GGG | + | chr4_1:61623177-61623196 | Msa0561960:CDS | 35.0% | |
| CATTGTTATAACAAAGCAGC+AGG | + | chr4_1:61623202-61623221 | Msa0561960:CDS | 35.0% | |
| TATAACAAAGCAGCAGGATT+CGG | + | chr4_1:61623208-61623227 | Msa0561960:CDS | 35.0% | |
| TAGTGACATGAACTTGAACA+GGG | - | chr4_1:61623324-61623343 | None:intergenic | 35.0% | |
| TTAGTGACATGAACTTGAAC+AGG | - | chr4_1:61623325-61623344 | None:intergenic | 35.0% | |
| ! | GGCTGTTAAAGGTCAAATTT+TGG | + | chr4_1:61623381-61623400 | Msa0561960:CDS | 35.0% |
| ! | CGATATTCCTTTTATGCTCA+AGG | + | chr4_1:61623634-61623653 | Msa0561960:CDS | 35.0% |
| ! | GTCTGATAATGTTGTAGTTG+TGG | + | chr4_1:61623693-61623712 | Msa0561960:CDS | 35.0% |
| TGAGAAAGAAGCTAAAGGTT+TGG | + | chr4_1:61623720-61623739 | Msa0561960:CDS | 35.0% | |
| ACAATAAGAAAGAAGCAAGG+GGG | + | chr4_1:61623759-61623778 | Msa0561960:exon | 35.0% | |
| GTCCTTCAATCCAGATAAAA+AGG | + | chr4_1:61621703-61621722 | Msa0561960:five_prime_UTR | 35.0% | |
| AGAACAAAATGAGTGTGTGA+TGG | - | chr4_1:61621750-61621769 | None:intergenic | 35.0% | |
| ! | TTCTGATAGCTTTTGTTCTC+TGG | - | chr4_1:61621896-61621915 | None:intergenic | 35.0% |
| TTTGTTTGTGAAGAAGTAGG+TGG | - | chr4_1:61621964-61621983 | None:intergenic | 35.0% | |
| AAACCAATTACTTTACTCCC+AGG | + | chr4_1:61622253-61622272 | Msa0561960:CDS | 35.0% | |
| !! | AAAAGTATCAGATGCTCTCA+AGG | - | chr4_1:61622732-61622751 | None:intergenic | 35.0% |
| GTCAAGCTAACATTCTATCA+GGG | + | chr4_1:61623176-61623195 | Msa0561960:CDS | 35.0% | |
| TCAAGCTAACATTCTATCAG+GGG | + | chr4_1:61623177-61623196 | Msa0561960:CDS | 35.0% | |
| CATTGTTATAACAAAGCAGC+AGG | + | chr4_1:61623202-61623221 | Msa0561960:CDS | 35.0% | |
| TATAACAAAGCAGCAGGATT+CGG | + | chr4_1:61623208-61623227 | Msa0561960:CDS | 35.0% | |
| TAGTGACATGAACTTGAACA+GGG | - | chr4_1:61623324-61623343 | None:intergenic | 35.0% | |
| TTAGTGACATGAACTTGAAC+AGG | - | chr4_1:61623325-61623344 | None:intergenic | 35.0% | |
| ! | GGCTGTTAAAGGTCAAATTT+TGG | + | chr4_1:61623381-61623400 | Msa0561960:CDS | 35.0% |
| ! | CGATATTCCTTTTATGCTCA+AGG | + | chr4_1:61623634-61623653 | Msa0561960:CDS | 35.0% |
| ! | GTCTGATAATGTTGTAGTTG+TGG | + | chr4_1:61623693-61623712 | Msa0561960:CDS | 35.0% |
| TGAGAAAGAAGCTAAAGGTT+TGG | + | chr4_1:61623720-61623739 | Msa0561960:CDS | 35.0% | |
| ACAATAAGAAAGAAGCAAGG+GGG | + | chr4_1:61623759-61623778 | Msa0561960:exon | 35.0% | |
| GTATTGTACCCGAGTGAATA+TGG | + | chr4_1:61622076-61622095 | Msa0561960:CDS | 40.0% | |
| TACTCTCTTCTGATCCTGTT+GGG | - | chr4_1:61622108-61622127 | None:intergenic | 40.0% | |
| !!! | TGTTGCCATTTTGAAAGCAG+TGG | + | chr4_1:61622129-61622148 | Msa0561960:CDS | 40.0% |
| ATCCTCCACTGCTTTCAAAA+TGG | - | chr4_1:61622137-61622156 | None:intergenic | 40.0% | |
| ! | GTTGCAAAATGGTCTTGAAC+TGG | + | chr4_1:61622165-61622184 | Msa0561960:CDS | 40.0% |
| !! | AGAGCATCTGATACTTTTCC+TGG | + | chr4_1:61622734-61622753 | Msa0561960:CDS | 40.0% |
| GAGACATCCTCTTTGATTCA+AGG | + | chr4_1:61622888-61622907 | Msa0561960:CDS | 40.0% | |
| CTCTGTACCTTGAATCAAAG+AGG | - | chr4_1:61622898-61622917 | None:intergenic | 40.0% | |
| CTCTTTGATTCAAGGTACAG+AGG | + | chr4_1:61622896-61622915 | Msa0561960:CDS | 40.0% | |
| TTTGATTCAAGGTACAGAGG+AGG | + | chr4_1:61622899-61622918 | Msa0561960:CDS | 40.0% | |
| !! | TTTCACCACAGAAGGTATTC+TGG | + | chr4_1:61622979-61622998 | Msa0561960:CDS | 40.0% |
| ATGGTGAGAAGGACTATTCT+GGG | + | chr4_1:61623071-61623090 | Msa0561960:CDS | 40.0% | |
| GGTCAAGCTAACATTCTATC+AGG | + | chr4_1:61623175-61623194 | Msa0561960:CDS | 40.0% | |
| GGTATCTTAGTGAAATTGGC+AGG | + | chr4_1:61623238-61623257 | Msa0561960:CDS | 40.0% | |
| CAGTGGTGATCCTAATAAGA+AGG | + | chr4_1:61623429-61623448 | Msa0561960:CDS | 40.0% | |
| ATCAACAGCTGGGAAGTTAA+CGG | + | chr4_1:61623537-61623556 | Msa0561960:CDS | 40.0% | |
| AAGTTAACGGTGAGTGGTAA+TGG | + | chr4_1:61623550-61623569 | Msa0561960:CDS | 40.0% | |
| !! | TGAGTGGTAATGGCACAAAA+TGG | + | chr4_1:61623560-61623579 | Msa0561960:CDS | 40.0% |
| !! | GAGTGGTAATGGCACAAAAT+GGG | + | chr4_1:61623561-61623580 | Msa0561960:CDS | 40.0% |
| CGAACATGACTAATCCGATT+AGG | - | chr4_1:61623616-61623635 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAAGCTAA+AGG | + | chr4_1:61623715-61623734 | Msa0561960:CDS | 40.0% | |
| GATTGAAGGACTTGAAGTGA+AGG | - | chr4_1:61621694-61621713 | None:intergenic | 40.0% | |
| GTATTGTACCCGAGTGAATA+TGG | + | chr4_1:61622076-61622095 | Msa0561960:CDS | 40.0% | |
| TACTCTCTTCTGATCCTGTT+GGG | - | chr4_1:61622108-61622127 | None:intergenic | 40.0% | |
| !!! | TGTTGCCATTTTGAAAGCAG+TGG | + | chr4_1:61622129-61622148 | Msa0561960:CDS | 40.0% |
| ATCCTCCACTGCTTTCAAAA+TGG | - | chr4_1:61622137-61622156 | None:intergenic | 40.0% | |
| ! | GTTGCAAAATGGTCTTGAAC+TGG | + | chr4_1:61622165-61622184 | Msa0561960:CDS | 40.0% |
| !! | AGAGCATCTGATACTTTTCC+TGG | + | chr4_1:61622734-61622753 | Msa0561960:CDS | 40.0% |
| GAGACATCCTCTTTGATTCA+AGG | + | chr4_1:61622888-61622907 | Msa0561960:CDS | 40.0% | |
| CTCTGTACCTTGAATCAAAG+AGG | - | chr4_1:61622898-61622917 | None:intergenic | 40.0% | |
| CTCTTTGATTCAAGGTACAG+AGG | + | chr4_1:61622896-61622915 | Msa0561960:CDS | 40.0% | |
| TTTGATTCAAGGTACAGAGG+AGG | + | chr4_1:61622899-61622918 | Msa0561960:CDS | 40.0% | |
| !! | TTTCACCACAGAAGGTATTC+TGG | + | chr4_1:61622979-61622998 | Msa0561960:CDS | 40.0% |
| ATGGTGAGAAGGACTATTCT+GGG | + | chr4_1:61623071-61623090 | Msa0561960:CDS | 40.0% | |
| GGTCAAGCTAACATTCTATC+AGG | + | chr4_1:61623175-61623194 | Msa0561960:CDS | 40.0% | |
| GGTATCTTAGTGAAATTGGC+AGG | + | chr4_1:61623238-61623257 | Msa0561960:CDS | 40.0% | |
| CAGTGGTGATCCTAATAAGA+AGG | + | chr4_1:61623429-61623448 | Msa0561960:CDS | 40.0% | |
| ATCAACAGCTGGGAAGTTAA+CGG | + | chr4_1:61623537-61623556 | Msa0561960:CDS | 40.0% | |
| AAGTTAACGGTGAGTGGTAA+TGG | + | chr4_1:61623550-61623569 | Msa0561960:CDS | 40.0% | |
| !! | TGAGTGGTAATGGCACAAAA+TGG | + | chr4_1:61623560-61623579 | Msa0561960:CDS | 40.0% |
| !! | GAGTGGTAATGGCACAAAAT+GGG | + | chr4_1:61623561-61623580 | Msa0561960:CDS | 40.0% |
| CGAACATGACTAATCCGATT+AGG | - | chr4_1:61623616-61623635 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAAGCTAA+AGG | + | chr4_1:61623715-61623734 | Msa0561960:CDS | 40.0% | |
| GCAACAACTAGCTAGTCCTT+TGG | + | chr4_1:61621933-61621952 | Msa0561960:CDS | 45.0% | |
| CTACTCTCTTCTGATCCTGT+TGG | - | chr4_1:61622109-61622128 | None:intergenic | 45.0% | |
| !!! | TGCCATTTTGAAAGCAGTGG+AGG | + | chr4_1:61622132-61622151 | Msa0561960:CDS | 45.0% |
| ! | AATGGTCTTGAACTGGTAGC+AGG | + | chr4_1:61622172-61622191 | Msa0561960:CDS | 45.0% |
| ! | ATGGTCTTGAACTGGTAGCA+GGG | + | chr4_1:61622173-61622192 | Msa0561960:CDS | 45.0% |
| CCACCTGGGAGTAAAGTAAT+TGG | - | chr4_1:61622259-61622278 | None:intergenic | 45.0% | |
| CCAATTACTTTACTCCCAGG+TGG | + | chr4_1:61622256-61622275 | Msa0561960:CDS | 45.0% | |
| ! | CTGATACTTTTCCTGGTGAC+CGG | + | chr4_1:61622741-61622760 | Msa0561960:CDS | 45.0% |
| ACCACATCTCAACTAGATGC+CGG | - | chr4_1:61622763-61622782 | None:intergenic | 45.0% | |
| ATGCAAGGTGGTAACTTCAG+TGG | + | chr4_1:61622818-61622837 | Msa0561960:CDS | 45.0% | |
| GAAGAAGCAGTTGTTGATCC+GGG | - | chr4_1:61622954-61622973 | None:intergenic | 45.0% | |
| GGAAGAAGCAGTTGTTGATC+CGG | - | chr4_1:61622955-61622974 | None:intergenic | 45.0% | |
| TTCCTGCATTTCACCACAGA+AGG | + | chr4_1:61622971-61622990 | Msa0561960:CDS | 45.0% | |
| TACCTTCTGTGGTGAAATGC+AGG | - | chr4_1:61622976-61622995 | None:intergenic | 45.0% | |
| CTGTACCAGAATACCTTCTG+TGG | - | chr4_1:61622987-61623006 | None:intergenic | 45.0% | |
| !! | GAAGGTATTCTGGTACAGCA+AGG | + | chr4_1:61622989-61623008 | Msa0561960:CDS | 45.0% |
| CTTGGACAACACTCAACAGT+TGG | + | chr4_1:61623040-61623059 | Msa0561960:CDS | 45.0% | |
| CAGAATAGTCCTTCTCACCA+TGG | - | chr4_1:61623072-61623091 | None:intergenic | 45.0% | |
| CATGGTGAGAAGGACTATTC+TGG | + | chr4_1:61623070-61623089 | Msa0561960:CDS | 45.0% | |
| TGGTGAGAAGGACTATTCTG+GGG | + | chr4_1:61623072-61623091 | Msa0561960:CDS | 45.0% | |
| ! | CACTGATGTGGCGATTTTCT+CGG | + | chr4_1:61623129-61623148 | Msa0561960:CDS | 45.0% |
| ACCTCTTAGCACAATACCAG+TGG | - | chr4_1:61623158-61623177 | None:intergenic | 45.0% | |
| GCAACAACTAGCTAGTCCTT+TGG | + | chr4_1:61621933-61621952 | Msa0561960:CDS | 45.0% | |
| CTACTCTCTTCTGATCCTGT+TGG | - | chr4_1:61622109-61622128 | None:intergenic | 45.0% | |
| !!! | TGCCATTTTGAAAGCAGTGG+AGG | + | chr4_1:61622132-61622151 | Msa0561960:CDS | 45.0% |
| ! | AATGGTCTTGAACTGGTAGC+AGG | + | chr4_1:61622172-61622191 | Msa0561960:CDS | 45.0% |
| ! | ATGGTCTTGAACTGGTAGCA+GGG | + | chr4_1:61622173-61622192 | Msa0561960:CDS | 45.0% |
| CCACCTGGGAGTAAAGTAAT+TGG | - | chr4_1:61622259-61622278 | None:intergenic | 45.0% | |
| CCAATTACTTTACTCCCAGG+TGG | + | chr4_1:61622256-61622275 | Msa0561960:CDS | 45.0% | |
| ! | CTGATACTTTTCCTGGTGAC+CGG | + | chr4_1:61622741-61622760 | Msa0561960:CDS | 45.0% |
| ACCACATCTCAACTAGATGC+CGG | - | chr4_1:61622763-61622782 | None:intergenic | 45.0% | |
| ATGCAAGGTGGTAACTTCAG+TGG | + | chr4_1:61622818-61622837 | Msa0561960:CDS | 45.0% | |
| GAAGAAGCAGTTGTTGATCC+GGG | - | chr4_1:61622954-61622973 | None:intergenic | 45.0% | |
| GGAAGAAGCAGTTGTTGATC+CGG | - | chr4_1:61622955-61622974 | None:intergenic | 45.0% | |
| TTCCTGCATTTCACCACAGA+AGG | + | chr4_1:61622971-61622990 | Msa0561960:CDS | 45.0% | |
| TACCTTCTGTGGTGAAATGC+AGG | - | chr4_1:61622976-61622995 | None:intergenic | 45.0% | |
| CTGTACCAGAATACCTTCTG+TGG | - | chr4_1:61622987-61623006 | None:intergenic | 45.0% | |
| !! | GAAGGTATTCTGGTACAGCA+AGG | + | chr4_1:61622989-61623008 | Msa0561960:CDS | 45.0% |
| CTTGGACAACACTCAACAGT+TGG | + | chr4_1:61623040-61623059 | Msa0561960:CDS | 45.0% | |
| CAGAATAGTCCTTCTCACCA+TGG | - | chr4_1:61623072-61623091 | None:intergenic | 45.0% | |
| CATGGTGAGAAGGACTATTC+TGG | + | chr4_1:61623070-61623089 | Msa0561960:CDS | 45.0% | |
| TGGTGAGAAGGACTATTCTG+GGG | + | chr4_1:61623072-61623091 | Msa0561960:CDS | 45.0% | |
| ! | CACTGATGTGGCGATTTTCT+CGG | + | chr4_1:61623129-61623148 | Msa0561960:CDS | 45.0% |
| ACCTCTTAGCACAATACCAG+TGG | - | chr4_1:61623158-61623177 | None:intergenic | 45.0% | |
| !! | AAAATATTTAAAAATTTCTT+GGG | - | chr4_1:61622454-61622473 | None:intergenic | 5.0% |
| !! | AAAAATATTTAAAAATTTCT+TGG | - | chr4_1:61622455-61622474 | None:intergenic | 5.0% |
| !! | AAAATATTTAAAAATTTCTT+GGG | - | chr4_1:61622454-61622473 | None:intergenic | 5.0% |
| !! | AAAAATATTTAAAAATTTCT+TGG | - | chr4_1:61622455-61622474 | None:intergenic | 5.0% |
| ! | GAAGTAGGTGGTGATGCCAA+AGG | - | chr4_1:61621952-61621971 | None:intergenic | 50.0% |
| GGTCTGCACCATATTCACTC+GGG | - | chr4_1:61622087-61622106 | None:intergenic | 50.0% | |
| GGGTCTGCACCATATTCACT+CGG | - | chr4_1:61622088-61622107 | None:intergenic | 50.0% | |
| GAATATGGTGCAGACCCAAC+AGG | + | chr4_1:61622091-61622110 | Msa0561960:CDS | 50.0% | |
| ! | TGGTCTTGAACTGGTAGCAG+GGG | + | chr4_1:61622174-61622193 | Msa0561960:CDS | 50.0% |
| GTAGCAGGGGTGAGTGATTT+GGG | + | chr4_1:61622187-61622206 | Msa0561960:CDS | 50.0% | |
| TCACCACAACATTGCCACCT+GGG | - | chr4_1:61622273-61622292 | None:intergenic | 50.0% | |
| ACCGGCATCTAGTTGAGATG+TGG | + | chr4_1:61622759-61622778 | Msa0561960:CDS | 50.0% | |
| GATTCAAGGTACAGAGGAGG+AGG | + | chr4_1:61622902-61622921 | Msa0561960:CDS | 50.0% | |
| !! | TCGTTGATTCCGCTAGAACC+CGG | + | chr4_1:61622933-61622952 | Msa0561960:CDS | 50.0% |
| ! | GTTGTTGATCCGGGTTCTAG+CGG | - | chr4_1:61622945-61622964 | None:intergenic | 50.0% |
| GGACAACACTCAACAGTTGG+TGG | + | chr4_1:61623043-61623062 | Msa0561960:CDS | 50.0% | |
| !! | TCAACAGTTGGTGGTGACCA+TGG | + | chr4_1:61623052-61623071 | Msa0561960:CDS | 50.0% |
| CGACAATGCAGTCACTGATG+TGG | + | chr4_1:61623117-61623136 | Msa0561960:CDS | 50.0% | |
| GCCACTGGTATTGTGCTAAG+AGG | + | chr4_1:61623154-61623173 | Msa0561960:CDS | 50.0% | |
| AACAAAGCAGCAGGATTCGG+TGG | + | chr4_1:61623211-61623230 | Msa0561960:CDS | 50.0% | |
| ATGGGCTTGAGATCAACAGC+TGG | + | chr4_1:61623526-61623545 | Msa0561960:CDS | 50.0% | |
| TGGGCTTGAGATCAACAGCT+GGG | + | chr4_1:61623527-61623546 | Msa0561960:CDS | 50.0% | |
| TGGCTCCCCTTGAGCATAAA+AGG | - | chr4_1:61623644-61623663 | None:intergenic | 50.0% | |
| ! | GAAGTAGGTGGTGATGCCAA+AGG | - | chr4_1:61621952-61621971 | None:intergenic | 50.0% |
| GGTCTGCACCATATTCACTC+GGG | - | chr4_1:61622087-61622106 | None:intergenic | 50.0% | |
| GGGTCTGCACCATATTCACT+CGG | - | chr4_1:61622088-61622107 | None:intergenic | 50.0% | |
| GAATATGGTGCAGACCCAAC+AGG | + | chr4_1:61622091-61622110 | Msa0561960:CDS | 50.0% | |
| ! | TGGTCTTGAACTGGTAGCAG+GGG | + | chr4_1:61622174-61622193 | Msa0561960:CDS | 50.0% |
| GTAGCAGGGGTGAGTGATTT+GGG | + | chr4_1:61622187-61622206 | Msa0561960:CDS | 50.0% | |
| TCACCACAACATTGCCACCT+GGG | - | chr4_1:61622273-61622292 | None:intergenic | 50.0% | |
| ACCGGCATCTAGTTGAGATG+TGG | + | chr4_1:61622759-61622778 | Msa0561960:CDS | 50.0% | |
| GATTCAAGGTACAGAGGAGG+AGG | + | chr4_1:61622902-61622921 | Msa0561960:CDS | 50.0% | |
| !! | TCGTTGATTCCGCTAGAACC+CGG | + | chr4_1:61622933-61622952 | Msa0561960:CDS | 50.0% |
| ! | GTTGTTGATCCGGGTTCTAG+CGG | - | chr4_1:61622945-61622964 | None:intergenic | 50.0% |
| GGACAACACTCAACAGTTGG+TGG | + | chr4_1:61623043-61623062 | Msa0561960:CDS | 50.0% | |
| !! | TCAACAGTTGGTGGTGACCA+TGG | + | chr4_1:61623052-61623071 | Msa0561960:CDS | 50.0% |
| CGACAATGCAGTCACTGATG+TGG | + | chr4_1:61623117-61623136 | Msa0561960:CDS | 50.0% | |
| GCCACTGGTATTGTGCTAAG+AGG | + | chr4_1:61623154-61623173 | Msa0561960:CDS | 50.0% | |
| AACAAAGCAGCAGGATTCGG+TGG | + | chr4_1:61623211-61623230 | Msa0561960:CDS | 50.0% | |
| ATGGGCTTGAGATCAACAGC+TGG | + | chr4_1:61623526-61623545 | Msa0561960:CDS | 50.0% | |
| TGGGCTTGAGATCAACAGCT+GGG | + | chr4_1:61623527-61623546 | Msa0561960:CDS | 50.0% | |
| TGGCTCCCCTTGAGCATAAA+AGG | - | chr4_1:61623644-61623663 | None:intergenic | 50.0% | |
| GGTAGCAGGGGTGAGTGATT+TGG | + | chr4_1:61622186-61622205 | Msa0561960:CDS | 55.0% | |
| ACTCCCAGGTGGCAATGTTG+TGG | + | chr4_1:61622267-61622286 | Msa0561960:CDS | 55.0% | |
| CTCACCACAACATTGCCACC+TGG | - | chr4_1:61622274-61622293 | None:intergenic | 55.0% | |
| GTAGGTGCACACACGTGATG+TGG | - | chr4_1:61622636-61622655 | None:intergenic | 55.0% | |
| TCAACTAGATGCCGGTCACC+AGG | - | chr4_1:61622755-61622774 | None:intergenic | 55.0% | |
| ! | TGGTGGTGACCATGGTGAGA+AGG | + | chr4_1:61623060-61623079 | Msa0561960:CDS | 55.0% |
| !! | GCAGCAGGATTCGGTGGTAT+AGG | + | chr4_1:61623217-61623236 | Msa0561960:CDS | 55.0% |
| GCTGGGAAGTTAACGGTGAG+TGG | + | chr4_1:61623544-61623563 | Msa0561960:CDS | 55.0% | |
| GGTAGCAGGGGTGAGTGATT+TGG | + | chr4_1:61622186-61622205 | Msa0561960:CDS | 55.0% | |
| ACTCCCAGGTGGCAATGTTG+TGG | + | chr4_1:61622267-61622286 | Msa0561960:CDS | 55.0% | |
| CTCACCACAACATTGCCACC+TGG | - | chr4_1:61622274-61622293 | None:intergenic | 55.0% | |
| GTAGGTGCACACACGTGATG+TGG | - | chr4_1:61622636-61622655 | None:intergenic | 55.0% | |
| TCAACTAGATGCCGGTCACC+AGG | - | chr4_1:61622755-61622774 | None:intergenic | 55.0% | |
| ! | TGGTGGTGACCATGGTGAGA+AGG | + | chr4_1:61623060-61623079 | Msa0561960:CDS | 55.0% |
| !! | GCAGCAGGATTCGGTGGTAT+AGG | + | chr4_1:61623217-61623236 | Msa0561960:CDS | 55.0% |
| GCTGGGAAGTTAACGGTGAG+TGG | + | chr4_1:61623544-61623563 | Msa0561960:CDS | 55.0% | |
| ! | GCAGGGGTGAGTGATTTGGG+AGG | + | chr4_1:61622190-61622209 | Msa0561960:CDS | 60.0% |
| ! | GCGATTTTCTCGGCAGCCAC+TGG | + | chr4_1:61623139-61623158 | Msa0561960:CDS | 60.0% |
| ! | GCAGGGGTGAGTGATTTGGG+AGG | + | chr4_1:61622190-61622209 | Msa0561960:CDS | 60.0% |
| ! | GCGATTTTCTCGGCAGCCAC+TGG | + | chr4_1:61623139-61623158 | Msa0561960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61621692 | 61624044 | 61621692 | ID=Msa0561960;Name=Msa0561960 |
| chr4_1 | mRNA | 61621692 | 61624044 | 61621692 | ID=Msa0561960-mRNA-1;Parent=Msa0561960;Name=Msa0561960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=125|1|1|1|1|1|3|279|480 |
| chr4_1 | exon | 61621692 | 61621987 | 61621692 | ID=Msa0561960-mRNA-1:exon:19378;Parent=Msa0561960-mRNA-1 |
| chr4_1 | exon | 61622067 | 61622288 | 61622067 | ID=Msa0561960-mRNA-1:exon:19379;Parent=Msa0561960-mRNA-1 |
| chr4_1 | exon | 61622716 | 61624044 | 61622716 | ID=Msa0561960-mRNA-1:exon:19380;Parent=Msa0561960-mRNA-1 |
| chr4_1 | five_prime_UTR | 61621692 | 61621816 | 61621692 | ID=Msa0561960-mRNA-1:five_prime_utr;Parent=Msa0561960-mRNA-1 |
| chr4_1 | CDS | 61621817 | 61621987 | 61621817 | ID=Msa0561960-mRNA-1:cds;Parent=Msa0561960-mRNA-1 |
| chr4_1 | CDS | 61622067 | 61622288 | 61622067 | ID=Msa0561960-mRNA-1:cds;Parent=Msa0561960-mRNA-1 |
| chr4_1 | CDS | 61622716 | 61623765 | 61622716 | ID=Msa0561960-mRNA-1:cds;Parent=Msa0561960-mRNA-1 |
| chr4_1 | three_prime_UTR | 61623766 | 61624044 | 61623766 | ID=Msa0561960-mRNA-1:three_prime_utr;Parent=Msa0561960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
