Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699060 | XP_013457385.1 | 96.042 | 480 | 19 | 0 | 1 | 480 | 1 | 480 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699060 | sp|O49432|QRT3_ARATH | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 1.48e-137 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699060 | A0A072UPZ7 | 96.042 | 480 | 19 | 0 | 1 | 480 | 1 | 480 | 0.0 | 926 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0655290 | Msa0699060 | 0.857330 | 1.756898e-62 | -8.615850e-47 |
| Msa0699060 | Msa1055010 | 0.805606 | 1.230844e-49 | -8.615850e-47 |
| Msa0130240 | Msa0699060 | 0.804083 | 2.560950e-49 | -8.615850e-47 |
| Msa0561960 | Msa0699060 | 0.871003 | 9.515618e-67 | -8.615850e-47 |
| Msa0593420 | Msa0699060 | 0.858246 | 9.400293e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699060 | MtrunA17_Chr4g0052711 | 96.042 | 480 | 19 | 0 | 1 | 480 | 1 | 480 | 0.0 | 926 |
| Msa0699060 | MtrunA17_Chr2g0297001 | 67.617 | 491 | 145 | 6 | 1 | 480 | 4 | 491 | 0.0 | 612 |
| Msa0699060 | MtrunA17_Chr2g0296981 | 48.309 | 414 | 195 | 6 | 60 | 468 | 82 | 481 | 2.21e-135 | 400 |
| Msa0699060 | MtrunA17_Chr6g0455291 | 48.687 | 419 | 189 | 7 | 67 | 480 | 93 | 490 | 5.42e-127 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699060 | AT4G20040.1 | 59.598 | 448 | 165 | 5 | 37 | 474 | 36 | 477 | 0.0 | 535 |
| Msa0699060 | AT4G20050.7 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 1.51e-138 | 407 |
| Msa0699060 | AT4G20050.6 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 1.51e-138 | 407 |
| Msa0699060 | AT4G20050.2 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 1.51e-138 | 407 |
| Msa0699060 | AT4G20050.1 | 50.585 | 427 | 184 | 6 | 60 | 480 | 74 | 479 | 1.51e-138 | 407 |
| Msa0699060 | AT4G20050.5 | 50.585 | 427 | 184 | 6 | 60 | 480 | 99 | 504 | 3.13e-138 | 407 |
| Msa0699060 | AT4G20050.4 | 49.751 | 402 | 175 | 5 | 85 | 480 | 1 | 381 | 2.75e-127 | 375 |
| Msa0699060 | AT4G20050.3 | 49.751 | 402 | 175 | 5 | 85 | 480 | 1 | 381 | 2.75e-127 | 375 |
Find 115 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATGTGCTACAAATTT+TGG | 0.146774 | 4_4:+69604710 | None:intergenic |
| ACAATTGGAACCTTCTTATT+AGG | 0.182192 | 4_4:+69604932 | None:intergenic |
| GGCTGTTAAAGGTCAAATTT+TGG | 0.195856 | 4_4:-69604990 | Msa0699060:CDS |
| TGGCTCCCCTTGAGTATAAA+AGG | 0.227155 | 4_4:+69604730 | None:intergenic |
| GTCACTAATTGTCTATTTCT+TGG | 0.242965 | 4_4:-69605034 | Msa0699060:CDS |
| TAGAATTGACAACTGTTATA+TGG | 0.260121 | 4_4:-69605098 | Msa0699060:CDS |
| ATGTGCATTATTAGAGTAAC+AGG | 0.287505 | 4_4:-69606216 | Msa0699060:intron |
| TCACTAATTGTCTATTTCTT+GGG | 0.292562 | 4_4:-69605033 | Msa0699060:CDS |
| CCACCTGGGAGTAAAGTAAT+TGG | 0.305752 | 4_4:+69606013 | None:intergenic |
| CATGGTGAGAAGGACTATTC+TGG | 0.314832 | 4_4:-69605301 | Msa0699060:CDS |
| GGTCAAGCTAACATTCTATC+AGG | 0.316674 | 4_4:-69605196 | Msa0699060:CDS |
| TATAGGTATCTTAGTGAAAT+TGG | 0.326605 | 4_4:-69605137 | Msa0699060:CDS |
| GGTAGCAGGGGTGAGTGATT+TGG | 0.327485 | 4_4:-69606083 | Msa0699060:CDS |
| AGTATGATTGAATAGGTAAA+AGG | 0.332001 | 4_4:-69605670 | Msa0699060:intron |
| GTAGCAGGGGTGAGTGATTT+GGG | 0.334214 | 4_4:-69606082 | Msa0699060:CDS |
| GATGCATTTAAGTTGCAAAA+TGG | 0.347347 | 4_4:-69606115 | Msa0699060:CDS |
| ATCCTCCACTGCTTTCAAAA+TGG | 0.349501 | 4_4:+69606135 | None:intergenic |
| TGAGTGGTAATGGCACAAAA+TGG | 0.354252 | 4_4:-69604811 | Msa0699060:CDS |
| TTTCACCACAGAAGGTATTC+TGG | 0.360872 | 4_4:-69605392 | Msa0699060:CDS |
| ATATTGAAACAGATTTATAA+TGG | 0.363343 | 4_4:+69606490 | None:intergenic |
| GTATTGTACCCGAGTGAATA+TGG | 0.364196 | 4_4:-69606193 | Msa0699060:CDS |
| GAGACATCCTCTTTGATTCA+AGG | 0.389005 | 4_4:-69605483 | Msa0699060:CDS |
| TTAGTGACATGAACTTGAAC+AGG | 0.390498 | 4_4:+69605049 | None:intergenic |
| GCAGCAGGATTCGGTGGTAT+AGG | 0.397151 | 4_4:-69605154 | Msa0699060:CDS |
| TACTCTCTTCTGATCCTGTT+GGG | 0.411136 | 4_4:+69606164 | None:intergenic |
| CGAACATGACTAATCCGATT+AGG | 0.413954 | 4_4:+69604758 | None:intergenic |
| GAATTTATATAGTCAATCAT+TGG | 0.418361 | 4_4:+69604383 | None:intergenic |
| AACTGTTATATGGATTATAC+TGG | 0.421131 | 4_4:-69605088 | Msa0699060:CDS |
| TGACCATCTAGATTTACAAT+TGG | 0.425857 | 4_4:+69604917 | None:intergenic |
| GTTGCAAAATGGTCTTGAAC+TGG | 0.437300 | 4_4:-69606104 | Msa0699060:CDS |
| GGAAGAAGCAGTTGTTGATC+CGG | 0.437558 | 4_4:+69605419 | None:intergenic |
| TATAACAAAGCAGCAGGATT+CGG | 0.458956 | 4_4:-69605163 | Msa0699060:CDS |
| AATGGTCTTGAACTGGTAGC+AGG | 0.464254 | 4_4:-69606097 | Msa0699060:CDS |
| GCAACAACCAGCTAGTCCTT+TGG | 0.468234 | 4_4:-69606336 | Msa0699060:CDS |
| TGAGAAAGAAGCTAAAGGTT+TGG | 0.469132 | 4_4:-69604651 | Msa0699060:CDS |
| TACCTTCTGTGGTGAAATGC+AGG | 0.474883 | 4_4:+69605398 | None:intergenic |
| GTTCCAATTGTAAATCTAGA+TGG | 0.476983 | 4_4:-69604920 | Msa0699060:CDS |
| CACTAATTGTCTATTTCTTG+GGG | 0.486959 | 4_4:-69605032 | Msa0699060:CDS |
| CTACTCTCTTCTGATCCTGT+TGG | 0.493311 | 4_4:+69606163 | None:intergenic |
| CTTGGACAACACTCAACAGT+TGG | 0.494542 | 4_4:-69605331 | Msa0699060:CDS |
| ATGGTGAGAAGGACTATTCT+GGG | 0.497205 | 4_4:-69605300 | Msa0699060:CDS |
| GGTGTTATTATTGATTTGCA+AGG | 0.498421 | 4_4:-69606058 | Msa0699060:CDS |
| CTCACCACAACATTGCCACC+TGG | 0.500478 | 4_4:+69605998 | None:intergenic |
| AAGTTAACTGTGAGTGGTAA+TGG | 0.500694 | 4_4:-69604821 | Msa0699060:CDS |
| GAACAATAAGAAAGATGCTA+GGG | 0.504231 | 4_4:-69604614 | Msa0699060:exon |
| TCAACTAGATGCCGGTCACC+AGG | 0.510520 | 4_4:+69605619 | None:intergenic |
| CATTGTTATAACAAAGCAGC+AGG | 0.517528 | 4_4:-69605169 | Msa0699060:CDS |
| GAATATGGTGCAGACCCAAC+AGG | 0.517606 | 4_4:-69606178 | Msa0699060:CDS |
| TCGTTGATTCCGCTAGAACC+CGG | 0.520742 | 4_4:-69605438 | Msa0699060:CDS |
| TAGAAACAATGTGAATGGTA+TGG | 0.524399 | 4_4:-69604864 | Msa0699060:CDS |
| GCCACTGGTATTGTGCTAAG+AGG | 0.526724 | 4_4:-69605217 | Msa0699060:CDS |
| ATCTTTGTTTGTGAAGAAGT+AGG | 0.527554 | 4_4:+69606305 | None:intergenic |
| GTTATTATTGATTTGCAAGG+TGG | 0.531694 | 4_4:-69606055 | Msa0699060:CDS |
| TACTTCTTCACAAACAAAGA+TGG | 0.533925 | 4_4:-69606303 | Msa0699060:intron |
| TTCCTGCATTTCACCACAGA+AGG | 0.538916 | 4_4:-69605400 | Msa0699060:CDS |
| TGAACAATAAGAAAGATGCT+AGG | 0.541258 | 4_4:-69604615 | Msa0699060:exon |
| GGTATCTTAGTGAAATTGGC+AGG | 0.545694 | 4_4:-69605133 | Msa0699060:CDS |
| CTCTGTACCTTGAATCAAAG+AGG | 0.549531 | 4_4:+69605476 | None:intergenic |
| ATTTAGTAATGTTGATCAAG+TGG | 0.550162 | 4_4:-69604894 | Msa0699060:CDS |
| GGGTCTGCACCATATTCACT+CGG | 0.550559 | 4_4:+69606184 | None:intergenic |
| ATGGTCTTGAACTGGTAGCA+GGG | 0.550658 | 4_4:-69606096 | Msa0699060:CDS |
| AAAAGTATCAGATGCTCTCA+AGG | 0.551314 | 4_4:+69605642 | None:intergenic |
| CAGTGGTGATCCTAATAAGA+AGG | 0.551347 | 4_4:-69604942 | Msa0699060:CDS |
| GATTCAAGGTACAGAGGAGG+AGG | 0.551850 | 4_4:-69605469 | Msa0699060:CDS |
| GTCAAGCTAACATTCTATCA+GGG | 0.557104 | 4_4:-69605195 | Msa0699060:CDS |
| GAGAGTGAGAAAGAAGCTAA+AGG | 0.558237 | 4_4:-69604656 | Msa0699060:CDS |
| ATTGATAGAAACAATGTGAA+TGG | 0.559517 | 4_4:-69604869 | Msa0699060:CDS |
| ATGGGCTTGAGATCAACAGC+TGG | 0.563909 | 4_4:-69604845 | Msa0699060:CDS |
| ACTCCCAGGTGGCAATGTTG+TGG | 0.568111 | 4_4:-69606002 | Msa0699060:intron |
| GTCTGATAACGTTGTAGTTG+TGG | 0.568145 | 4_4:-69604678 | Msa0699060:CDS |
| GAAGAAGCAGTTGTTGATCC+GGG | 0.568923 | 4_4:+69605420 | None:intergenic |
| TCACCACAACATTGCCACCT+GGG | 0.572046 | 4_4:+69605999 | None:intergenic |
| AGAAACAATGTGAATGGTAT+GGG | 0.578616 | 4_4:-69604863 | Msa0699060:CDS |
| AAACCAATTACTTTACTCCC+AGG | 0.579529 | 4_4:-69606016 | Msa0699060:CDS |
| GGACAACACTCAACAGTTGG+TGG | 0.579683 | 4_4:-69605328 | Msa0699060:CDS |
| AGAACAAAATGAGTGTATGA+TGG | 0.579794 | 4_4:+69606524 | None:intergenic |
| TGTAAGTCAAGTCATCAAGT+AGG | 0.579799 | 4_4:+69604356 | None:intergenic |
| GGTGATGCCAAAGGACTAGC+TGG | 0.582602 | 4_4:+69606329 | None:intergenic |
| ATGATTGAATAGGTAAAAGG+AGG | 0.583775 | 4_4:-69605667 | Msa0699060:intron |
| GGAATTTACGCACAAAACAA+TGG | 0.587968 | 4_4:-69605532 | Msa0699060:CDS |
| GTTGTTGATCCGGGTTCTAG+CGG | 0.594924 | 4_4:+69605429 | None:intergenic |
| ACCACATCTCAACTAGATGC+CGG | 0.597862 | 4_4:+69605611 | None:intergenic |
| GAGTGGTAATGGCACAAAAT+GGG | 0.598153 | 4_4:-69604810 | Msa0699060:CDS |
| ATGCAAGGTGGTAACTTCAG+TGG | 0.602840 | 4_4:-69605553 | Msa0699060:CDS |
| AACAAAGCAGCAGGATTCGG+TGG | 0.608346 | 4_4:-69605160 | Msa0699060:CDS |
| CTCTTTGATTCAAGGTACAG+AGG | 0.610840 | 4_4:-69605475 | Msa0699060:CDS |
| CGACAATGCAGTCACTGATG+TGG | 0.611847 | 4_4:-69605254 | Msa0699060:CDS |
| GGATTATACTGGTATAGTAA+CGG | 0.620931 | 4_4:-69605077 | Msa0699060:CDS |
| TGGTCTTGAACTGGTAGCAG+GGG | 0.621961 | 4_4:-69606095 | Msa0699060:CDS |
| GCTGGGAAGTTAACTGTGAG+TGG | 0.626842 | 4_4:-69604827 | Msa0699060:CDS |
| TACAACGTTATCAGACACAT+TGG | 0.628563 | 4_4:+69604685 | None:intergenic |
| GAAGTAGGTGGTGATGCCAA+AGG | 0.630566 | 4_4:+69606320 | None:intergenic |
| CTGTACCAGAATACCTTCTG+TGG | 0.634222 | 4_4:+69605387 | None:intergenic |
| ACCGGCATCTAGTTGAGATG+TGG | 0.636690 | 4_4:-69605612 | Msa0699060:CDS |
| TGGTGGTGACCATGGTGAGA+AGG | 0.638340 | 4_4:-69605311 | Msa0699060:CDS |
| TGGGCTTGAGATCAACAGCT+GGG | 0.640163 | 4_4:-69604844 | Msa0699060:CDS |
| TCAACAGTTGGTGGTGACCA+TGG | 0.642439 | 4_4:-69605319 | Msa0699060:CDS |
| ACCTCTTAGCACAATACCAG+TGG | 0.650646 | 4_4:+69605216 | None:intergenic |
| GCAGGGGTGAGTGATTTGGG+AGG | 0.656097 | 4_4:-69606079 | Msa0699060:CDS |
| ATAGTGGATAATATGTTCAG+TGG | 0.656109 | 4_4:-69604959 | Msa0699060:CDS |
| CAGACAAAAGAATATATGCA+AGG | 0.662232 | 4_4:-69605568 | Msa0699060:CDS |
| TTTGATTCAAGGTACAGAGG+AGG | 0.667090 | 4_4:-69605472 | Msa0699060:CDS |
| TCAAGCTAACATTCTATCAG+GGG | 0.670436 | 4_4:-69605194 | Msa0699060:CDS |
| GGTCTGCACCATATTCACTC+GGG | 0.672480 | 4_4:+69606185 | None:intergenic |
| CAGAATAGTCCTTCTCACCA+TGG | 0.673192 | 4_4:+69605302 | None:intergenic |
| GATTGAAGGACTTGAAGTGA+AGG | 0.677077 | 4_4:+69606580 | None:intergenic |
| CCAATTACTTTACTCCCAGG+TGG | 0.681627 | 4_4:-69606013 | Msa0699060:CDS |
| GAAGGTATTCTGGTACAGCA+AGG | 0.682518 | 4_4:-69605382 | Msa0699060:CDS |
| AACAATAAGAAAGATGCTAG+GGG | 0.683893 | 4_4:-69604613 | Msa0699060:exon |
| TTTGTTTGTGAAGAAGTAGG+TGG | 0.693568 | 4_4:+69606308 | None:intergenic |
| ACAAAAGAATATATGCAAGG+TGG | 0.706174 | 4_4:-69605565 | Msa0699060:CDS |
| TGGTGAGAAGGACTATTCTG+GGG | 0.710714 | 4_4:-69605299 | Msa0699060:CDS |
| TAGTGACATGAACTTGAACA+GGG | 0.715958 | 4_4:+69605050 | None:intergenic |
| TGTGCATTATTAGAGTAACA+GGG | 0.739578 | 4_4:-69606215 | Msa0699060:intron |
| TTAAAGTATGAAATTCTCAG+TGG | 0.757215 | 4_4:-69606459 | Msa0699060:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAGATATATAAATTTAT+GGG | + | chr4_4:69605173-69605192 | None:intergenic | 10.0% |
| !! | TTCAAAGATATATAAATTTA+TGG | + | chr4_4:69605174-69605193 | None:intergenic | 10.0% |
| !! | TCAAAGATATATAAATTTAT+GGG | + | chr4_4:69605173-69605192 | None:intergenic | 10.0% |
| !! | TTCAAAGATATATAAATTTA+TGG | + | chr4_4:69605174-69605193 | None:intergenic | 10.0% |
| !! | ATATTGAAACAGATTTATAA+TGG | + | chr4_4:69604449-69604468 | None:intergenic | 15.0% |
| !!! | TGTTTTATTATTAGTATTGT+TGG | - | chr4_4:69604507-69604526 | Msa0699060:three_prime_UTR | 15.0% |
| !! | ATATTGAAACAGATTTATAA+TGG | + | chr4_4:69604449-69604468 | None:intergenic | 15.0% |
| !!! | TGTTTTATTATTAGTATTGT+TGG | - | chr4_4:69604507-69604526 | Msa0699060:three_prime_UTR | 15.0% |
| !! | AACTGCAAAATGAAAATAAA+TGG | + | chr4_4:69604982-69605001 | None:intergenic | 20.0% |
| !! | ATTTAAAAATTTCTTGGGAA+GGG | + | chr4_4:69605016-69605035 | None:intergenic | 20.0% |
| !! | TATTTAAAAATTTCTTGGGA+AGG | + | chr4_4:69605017-69605036 | None:intergenic | 20.0% |
| !! | CAATTATCCTCTAAATTTAT+TGG | + | chr4_4:69605082-69605101 | None:intergenic | 20.0% |
| !! | AAGATATATAAATTTATGGG+TGG | + | chr4_4:69605170-69605189 | None:intergenic | 20.0% |
| !!! | TATGAAAAGTATGATTGAAT+AGG | - | chr4_4:69605259-69605278 | Msa0699060:CDS | 20.0% |
| !!! | GGATGCTAATATTTTAATAA+AGG | - | chr4_4:69605925-69605944 | Msa0699060:intron | 20.0% |
| !!! | ATTTTAATAAAGGCTGTTAA+AGG | - | chr4_4:69605935-69605954 | Msa0699060:intron | 20.0% |
| !! | GAATTTATATAGTCAATCAT+TGG | + | chr4_4:69606556-69606575 | None:intergenic | 20.0% |
| !! | AACTGCAAAATGAAAATAAA+TGG | + | chr4_4:69604982-69605001 | None:intergenic | 20.0% |
| !! | ATTTAAAAATTTCTTGGGAA+GGG | + | chr4_4:69605016-69605035 | None:intergenic | 20.0% |
| !! | TATTTAAAAATTTCTTGGGA+AGG | + | chr4_4:69605017-69605036 | None:intergenic | 20.0% |
| !! | CAATTATCCTCTAAATTTAT+TGG | + | chr4_4:69605082-69605101 | None:intergenic | 20.0% |
| !! | AAGATATATAAATTTATGGG+TGG | + | chr4_4:69605170-69605189 | None:intergenic | 20.0% |
| !!! | TATGAAAAGTATGATTGAAT+AGG | - | chr4_4:69605259-69605278 | Msa0699060:CDS | 20.0% |
| !!! | GGATGCTAATATTTTAATAA+AGG | - | chr4_4:69605925-69605944 | Msa0699060:intron | 20.0% |
| !!! | ATTTTAATAAAGGCTGTTAA+AGG | - | chr4_4:69605935-69605954 | Msa0699060:intron | 20.0% |
| !! | GAATTTATATAGTCAATCAT+TGG | + | chr4_4:69606556-69606575 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTATCTGGATTGA+AGG | + | chr4_4:69604373-69604392 | None:intergenic | 25.0% |
| !!! | ACAACTGTATCTTTTTTATC+TGG | + | chr4_4:69604381-69604400 | None:intergenic | 25.0% |
| ! | TTAAAGTATGAAATTCTCAG+TGG | - | chr4_4:69604477-69604496 | Msa0699060:three_prime_UTR | 25.0% |
| ! | AAATAATAATTCAACGTACG+TGG | + | chr4_4:69604671-69604690 | None:intergenic | 25.0% |
| ! | GATTCATCCAATAAATTTAG+AGG | - | chr4_4:69605072-69605091 | Msa0699060:CDS | 25.0% |
| ! | ACTTTAGTAGAAAACTAACT+TGG | + | chr4_4:69605134-69605153 | None:intergenic | 25.0% |
| ! | TACATGTTAAGATGAAAAGT+AGG | + | chr4_4:69605219-69605238 | None:intergenic | 25.0% |
| ! | AGTATGATTGAATAGGTAAA+AGG | - | chr4_4:69605266-69605285 | Msa0699060:CDS | 25.0% |
| !!! | TTCATATCAAGTTGTTTTCT+TGG | - | chr4_4:69605587-69605606 | Msa0699060:CDS | 25.0% |
| ! | TATAGGTATCTTAGTGAAAT+TGG | - | chr4_4:69605799-69605818 | Msa0699060:intron | 25.0% |
| ! | TAGAATTGACAACTGTTATA+TGG | - | chr4_4:69605838-69605857 | Msa0699060:intron | 25.0% |
| !! | AACTGTTATATGGATTATAC+TGG | - | chr4_4:69605848-69605867 | Msa0699060:intron | 25.0% |
| !! | TCACTAATTGTCTATTTCTT+GGG | - | chr4_4:69605903-69605922 | Msa0699060:intron | 25.0% |
| ! | ATTTAGTAATGTTGATCAAG+TGG | - | chr4_4:69606042-69606061 | Msa0699060:CDS | 25.0% |
| ! | ATTGATAGAAACAATGTGAA+TGG | - | chr4_4:69606067-69606086 | Msa0699060:CDS | 25.0% |
| !! | GATATTCCTTTTATACTCAA+GGG | - | chr4_4:69606200-69606219 | Msa0699060:CDS | 25.0% |
| !! | ATATTCCTTTTATACTCAAG+GGG | - | chr4_4:69606201-69606220 | Msa0699060:CDS | 25.0% |
| !!! | TTTTTTTGTGATTACAGGTT+CGG | + | chr4_4:69606502-69606521 | None:intergenic | 25.0% |
| !!! | ACAACTTTTTTTGTGATTAC+AGG | + | chr4_4:69606507-69606526 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCTGGATTGA+AGG | + | chr4_4:69604373-69604392 | None:intergenic | 25.0% |
| !!! | ACAACTGTATCTTTTTTATC+TGG | + | chr4_4:69604381-69604400 | None:intergenic | 25.0% |
| ! | TTAAAGTATGAAATTCTCAG+TGG | - | chr4_4:69604477-69604496 | Msa0699060:three_prime_UTR | 25.0% |
| ! | AAATAATAATTCAACGTACG+TGG | + | chr4_4:69604671-69604690 | None:intergenic | 25.0% |
| ! | GATTCATCCAATAAATTTAG+AGG | - | chr4_4:69605072-69605091 | Msa0699060:CDS | 25.0% |
| ! | ACTTTAGTAGAAAACTAACT+TGG | + | chr4_4:69605134-69605153 | None:intergenic | 25.0% |
| ! | TACATGTTAAGATGAAAAGT+AGG | + | chr4_4:69605219-69605238 | None:intergenic | 25.0% |
| ! | AGTATGATTGAATAGGTAAA+AGG | - | chr4_4:69605266-69605285 | Msa0699060:CDS | 25.0% |
| !!! | TTCATATCAAGTTGTTTTCT+TGG | - | chr4_4:69605587-69605606 | Msa0699060:CDS | 25.0% |
| ! | TATAGGTATCTTAGTGAAAT+TGG | - | chr4_4:69605799-69605818 | Msa0699060:intron | 25.0% |
| ! | TAGAATTGACAACTGTTATA+TGG | - | chr4_4:69605838-69605857 | Msa0699060:intron | 25.0% |
| !! | AACTGTTATATGGATTATAC+TGG | - | chr4_4:69605848-69605867 | Msa0699060:intron | 25.0% |
| !! | TCACTAATTGTCTATTTCTT+GGG | - | chr4_4:69605903-69605922 | Msa0699060:intron | 25.0% |
| ! | ATTTAGTAATGTTGATCAAG+TGG | - | chr4_4:69606042-69606061 | Msa0699060:CDS | 25.0% |
| ! | ATTGATAGAAACAATGTGAA+TGG | - | chr4_4:69606067-69606086 | Msa0699060:CDS | 25.0% |
| !! | GATATTCCTTTTATACTCAA+GGG | - | chr4_4:69606200-69606219 | Msa0699060:CDS | 25.0% |
| !! | ATATTCCTTTTATACTCAAG+GGG | - | chr4_4:69606201-69606220 | Msa0699060:CDS | 25.0% |
| !!! | TTTTTTTGTGATTACAGGTT+CGG | + | chr4_4:69606502-69606521 | None:intergenic | 25.0% |
| !!! | ACAACTTTTTTTGTGATTAC+AGG | + | chr4_4:69606507-69606526 | None:intergenic | 25.0% |
| AGAACAAAATGAGTGTATGA+TGG | + | chr4_4:69604415-69604434 | None:intergenic | 30.0% | |
| ! | ATCTTTGTTTGTGAAGAAGT+AGG | + | chr4_4:69604634-69604653 | None:intergenic | 30.0% |
| TACTTCTTCACAAACAAAGA+TGG | - | chr4_4:69604633-69604652 | Msa0699060:CDS | 30.0% | |
| ATGTGCATTATTAGAGTAAC+AGG | - | chr4_4:69604720-69604739 | Msa0699060:CDS | 30.0% | |
| TGTGCATTATTAGAGTAACA+GGG | - | chr4_4:69604721-69604740 | Msa0699060:CDS | 30.0% | |
| !! | GATGCATTTAAGTTGCAAAA+TGG | - | chr4_4:69604821-69604840 | Msa0699060:CDS | 30.0% |
| !! | GGTGTTATTATTGATTTGCA+AGG | - | chr4_4:69604878-69604897 | Msa0699060:CDS | 30.0% |
| !! | GTTATTATTGATTTGCAAGG+TGG | - | chr4_4:69604881-69604900 | Msa0699060:CDS | 30.0% |
| TCAAGAGCAAAAGACTATTA+AGG | - | chr4_4:69605050-69605069 | Msa0699060:CDS | 30.0% | |
| !!! | CAATGTTTTTTGCTGCATTT+AGG | + | chr4_4:69605106-69605125 | None:intergenic | 30.0% |
| AAATGCAGCAAAAAACATTG+AGG | - | chr4_4:69605106-69605125 | Msa0699060:CDS | 30.0% | |
| ATGATTGAATAGGTAAAAGG+AGG | - | chr4_4:69605269-69605288 | Msa0699060:CDS | 30.0% | |
| ! | TTCTTTTGTCTGTAGTTTCT+TGG | + | chr4_4:69605360-69605379 | None:intergenic | 30.0% |
| CAGACAAAAGAATATATGCA+AGG | - | chr4_4:69605368-69605387 | Msa0699060:CDS | 30.0% | |
| ACAAAAGAATATATGCAAGG+TGG | - | chr4_4:69605371-69605390 | Msa0699060:CDS | 30.0% | |
| GGATTATACTGGTATAGTAA+CGG | - | chr4_4:69605859-69605878 | Msa0699060:intron | 30.0% | |
| ! | GTCACTAATTGTCTATTTCT+TGG | - | chr4_4:69605902-69605921 | Msa0699060:intron | 30.0% |
| ! | CACTAATTGTCTATTTCTTG+GGG | - | chr4_4:69605904-69605923 | Msa0699060:intron | 30.0% |
| ! | GCTGTTAAAGGTCAAATTTT+GGG | - | chr4_4:69605947-69605966 | Msa0699060:intron | 30.0% |
| !!! | AATTTTGGGTTTGAACATAG+TGG | - | chr4_4:69605961-69605980 | Msa0699060:intron | 30.0% |
| !! | ATAGTGGATAATATGTTCAG+TGG | - | chr4_4:69605977-69605996 | Msa0699060:intron | 30.0% |
| ACAATTGGAACCTTCTTATT+AGG | + | chr4_4:69606007-69606026 | None:intergenic | 30.0% | |
| GTTCCAATTGTAAATCTAGA+TGG | - | chr4_4:69606016-69606035 | Msa0699060:CDS | 30.0% | |
| TGACCATCTAGATTTACAAT+TGG | + | chr4_4:69606022-69606041 | None:intergenic | 30.0% | |
| TAGAAACAATGTGAATGGTA+TGG | - | chr4_4:69606072-69606091 | Msa0699060:CDS | 30.0% | |
| AGAAACAATGTGAATGGTAT+GGG | - | chr4_4:69606073-69606092 | Msa0699060:CDS | 30.0% | |
| !! | AGCTGATTTTTCATCAGTTT+TGG | - | chr4_4:69606150-69606169 | Msa0699060:CDS | 30.0% |
| !! | CAGTTTTGGTATTTCCTAAT+CGG | - | chr4_4:69606164-69606183 | Msa0699060:CDS | 30.0% |
| ! | CGATATTCCTTTTATACTCA+AGG | - | chr4_4:69606199-69606218 | Msa0699060:CDS | 30.0% |
| ! | ACAGAATGTGCTACAAATTT+TGG | + | chr4_4:69606229-69606248 | None:intergenic | 30.0% |
| TGAACAATAAGAAAGATGCT+AGG | - | chr4_4:69606321-69606340 | Msa0699060:CDS | 30.0% | |
| GAACAATAAGAAAGATGCTA+GGG | - | chr4_4:69606322-69606341 | Msa0699060:CDS | 30.0% | |
| AACAATAAGAAAGATGCTAG+GGG | - | chr4_4:69606323-69606342 | Msa0699060:CDS | 30.0% | |
| AGAACAAAATGAGTGTATGA+TGG | + | chr4_4:69604415-69604434 | None:intergenic | 30.0% | |
| ! | ATCTTTGTTTGTGAAGAAGT+AGG | + | chr4_4:69604634-69604653 | None:intergenic | 30.0% |
| TACTTCTTCACAAACAAAGA+TGG | - | chr4_4:69604633-69604652 | Msa0699060:CDS | 30.0% | |
| ATGTGCATTATTAGAGTAAC+AGG | - | chr4_4:69604720-69604739 | Msa0699060:CDS | 30.0% | |
| TGTGCATTATTAGAGTAACA+GGG | - | chr4_4:69604721-69604740 | Msa0699060:CDS | 30.0% | |
| !! | GATGCATTTAAGTTGCAAAA+TGG | - | chr4_4:69604821-69604840 | Msa0699060:CDS | 30.0% |
| !! | GGTGTTATTATTGATTTGCA+AGG | - | chr4_4:69604878-69604897 | Msa0699060:CDS | 30.0% |
| !! | GTTATTATTGATTTGCAAGG+TGG | - | chr4_4:69604881-69604900 | Msa0699060:CDS | 30.0% |
| TCAAGAGCAAAAGACTATTA+AGG | - | chr4_4:69605050-69605069 | Msa0699060:CDS | 30.0% | |
| !!! | CAATGTTTTTTGCTGCATTT+AGG | + | chr4_4:69605106-69605125 | None:intergenic | 30.0% |
| AAATGCAGCAAAAAACATTG+AGG | - | chr4_4:69605106-69605125 | Msa0699060:CDS | 30.0% | |
| ATGATTGAATAGGTAAAAGG+AGG | - | chr4_4:69605269-69605288 | Msa0699060:CDS | 30.0% | |
| ! | TTCTTTTGTCTGTAGTTTCT+TGG | + | chr4_4:69605360-69605379 | None:intergenic | 30.0% |
| CAGACAAAAGAATATATGCA+AGG | - | chr4_4:69605368-69605387 | Msa0699060:CDS | 30.0% | |
| ACAAAAGAATATATGCAAGG+TGG | - | chr4_4:69605371-69605390 | Msa0699060:CDS | 30.0% | |
| GGATTATACTGGTATAGTAA+CGG | - | chr4_4:69605859-69605878 | Msa0699060:intron | 30.0% | |
| ! | GTCACTAATTGTCTATTTCT+TGG | - | chr4_4:69605902-69605921 | Msa0699060:intron | 30.0% |
| ! | CACTAATTGTCTATTTCTTG+GGG | - | chr4_4:69605904-69605923 | Msa0699060:intron | 30.0% |
| ! | GCTGTTAAAGGTCAAATTTT+GGG | - | chr4_4:69605947-69605966 | Msa0699060:intron | 30.0% |
| !!! | AATTTTGGGTTTGAACATAG+TGG | - | chr4_4:69605961-69605980 | Msa0699060:intron | 30.0% |
| !! | ATAGTGGATAATATGTTCAG+TGG | - | chr4_4:69605977-69605996 | Msa0699060:intron | 30.0% |
| ACAATTGGAACCTTCTTATT+AGG | + | chr4_4:69606007-69606026 | None:intergenic | 30.0% | |
| GTTCCAATTGTAAATCTAGA+TGG | - | chr4_4:69606016-69606035 | Msa0699060:CDS | 30.0% | |
| TGACCATCTAGATTTACAAT+TGG | + | chr4_4:69606022-69606041 | None:intergenic | 30.0% | |
| TAGAAACAATGTGAATGGTA+TGG | - | chr4_4:69606072-69606091 | Msa0699060:CDS | 30.0% | |
| AGAAACAATGTGAATGGTAT+GGG | - | chr4_4:69606073-69606092 | Msa0699060:CDS | 30.0% | |
| !! | AGCTGATTTTTCATCAGTTT+TGG | - | chr4_4:69606150-69606169 | Msa0699060:CDS | 30.0% |
| !! | CAGTTTTGGTATTTCCTAAT+CGG | - | chr4_4:69606164-69606183 | Msa0699060:CDS | 30.0% |
| ! | CGATATTCCTTTTATACTCA+AGG | - | chr4_4:69606199-69606218 | Msa0699060:CDS | 30.0% |
| ! | ACAGAATGTGCTACAAATTT+TGG | + | chr4_4:69606229-69606248 | None:intergenic | 30.0% |
| TGAACAATAAGAAAGATGCT+AGG | - | chr4_4:69606321-69606340 | Msa0699060:CDS | 30.0% | |
| GAACAATAAGAAAGATGCTA+GGG | - | chr4_4:69606322-69606341 | Msa0699060:CDS | 30.0% | |
| AACAATAAGAAAGATGCTAG+GGG | - | chr4_4:69606323-69606342 | Msa0699060:CDS | 30.0% | |
| ! | TTCTGATAGCTTTTGTTCTC+TGG | + | chr4_4:69604563-69604582 | None:intergenic | 35.0% |
| TTTGTTTGTGAAGAAGTAGG+TGG | + | chr4_4:69604631-69604650 | None:intergenic | 35.0% | |
| AAACCAATTACTTTACTCCC+AGG | - | chr4_4:69604920-69604939 | Msa0699060:CDS | 35.0% | |
| !! | AAAAGTATCAGATGCTCTCA+AGG | + | chr4_4:69605297-69605316 | None:intergenic | 35.0% |
| GGAATTTACGCACAAAACAA+TGG | - | chr4_4:69605404-69605423 | Msa0699060:CDS | 35.0% | |
| GTCAAGCTAACATTCTATCA+GGG | - | chr4_4:69605741-69605760 | Msa0699060:intron | 35.0% | |
| TCAAGCTAACATTCTATCAG+GGG | - | chr4_4:69605742-69605761 | Msa0699060:intron | 35.0% | |
| CATTGTTATAACAAAGCAGC+AGG | - | chr4_4:69605767-69605786 | Msa0699060:intron | 35.0% | |
| TATAACAAAGCAGCAGGATT+CGG | - | chr4_4:69605773-69605792 | Msa0699060:intron | 35.0% | |
| TAGTGACATGAACTTGAACA+GGG | + | chr4_4:69605889-69605908 | None:intergenic | 35.0% | |
| TTAGTGACATGAACTTGAAC+AGG | + | chr4_4:69605890-69605909 | None:intergenic | 35.0% | |
| ! | GGCTGTTAAAGGTCAAATTT+TGG | - | chr4_4:69605946-69605965 | Msa0699060:intron | 35.0% |
| AAGTTAACTGTGAGTGGTAA+TGG | - | chr4_4:69606115-69606134 | Msa0699060:CDS | 35.0% | |
| TACAACGTTATCAGACACAT+TGG | + | chr4_4:69606254-69606273 | None:intergenic | 35.0% | |
| TGAGAAAGAAGCTAAAGGTT+TGG | - | chr4_4:69606285-69606304 | Msa0699060:intron | 35.0% | |
| ! | TTCTGATAGCTTTTGTTCTC+TGG | + | chr4_4:69604563-69604582 | None:intergenic | 35.0% |
| TTTGTTTGTGAAGAAGTAGG+TGG | + | chr4_4:69604631-69604650 | None:intergenic | 35.0% | |
| AAACCAATTACTTTACTCCC+AGG | - | chr4_4:69604920-69604939 | Msa0699060:CDS | 35.0% | |
| !! | AAAAGTATCAGATGCTCTCA+AGG | + | chr4_4:69605297-69605316 | None:intergenic | 35.0% |
| GGAATTTACGCACAAAACAA+TGG | - | chr4_4:69605404-69605423 | Msa0699060:CDS | 35.0% | |
| GTCAAGCTAACATTCTATCA+GGG | - | chr4_4:69605741-69605760 | Msa0699060:intron | 35.0% | |
| TCAAGCTAACATTCTATCAG+GGG | - | chr4_4:69605742-69605761 | Msa0699060:intron | 35.0% | |
| CATTGTTATAACAAAGCAGC+AGG | - | chr4_4:69605767-69605786 | Msa0699060:intron | 35.0% | |
| TATAACAAAGCAGCAGGATT+CGG | - | chr4_4:69605773-69605792 | Msa0699060:intron | 35.0% | |
| TAGTGACATGAACTTGAACA+GGG | + | chr4_4:69605889-69605908 | None:intergenic | 35.0% | |
| TTAGTGACATGAACTTGAAC+AGG | + | chr4_4:69605890-69605909 | None:intergenic | 35.0% | |
| ! | GGCTGTTAAAGGTCAAATTT+TGG | - | chr4_4:69605946-69605965 | Msa0699060:intron | 35.0% |
| AAGTTAACTGTGAGTGGTAA+TGG | - | chr4_4:69606115-69606134 | Msa0699060:CDS | 35.0% | |
| TACAACGTTATCAGACACAT+TGG | + | chr4_4:69606254-69606273 | None:intergenic | 35.0% | |
| TGAGAAAGAAGCTAAAGGTT+TGG | - | chr4_4:69606285-69606304 | Msa0699060:intron | 35.0% | |
| GTATTGTACCCGAGTGAATA+TGG | - | chr4_4:69604743-69604762 | Msa0699060:CDS | 40.0% | |
| TACTCTCTTCTGATCCTGTT+GGG | + | chr4_4:69604775-69604794 | None:intergenic | 40.0% | |
| !!! | TGATGCCATTTTGAAAGCAG+TGG | - | chr4_4:69604796-69604815 | Msa0699060:CDS | 40.0% |
| ATCCTCCACTGCTTTCAAAA+TGG | + | chr4_4:69604804-69604823 | None:intergenic | 40.0% | |
| ! | GTTGCAAAATGGTCTTGAAC+TGG | - | chr4_4:69604832-69604851 | Msa0699060:CDS | 40.0% |
| !! | AGAGCATCTGATACTTTTCC+TGG | - | chr4_4:69605299-69605318 | Msa0699060:CDS | 40.0% |
| GAGACATCCTCTTTGATTCA+AGG | - | chr4_4:69605453-69605472 | Msa0699060:CDS | 40.0% | |
| CTCTGTACCTTGAATCAAAG+AGG | + | chr4_4:69605463-69605482 | None:intergenic | 40.0% | |
| CTCTTTGATTCAAGGTACAG+AGG | - | chr4_4:69605461-69605480 | Msa0699060:CDS | 40.0% | |
| TTTGATTCAAGGTACAGAGG+AGG | - | chr4_4:69605464-69605483 | Msa0699060:CDS | 40.0% | |
| !! | TTTCACCACAGAAGGTATTC+TGG | - | chr4_4:69605544-69605563 | Msa0699060:CDS | 40.0% |
| ATGGTGAGAAGGACTATTCT+GGG | - | chr4_4:69605636-69605655 | Msa0699060:CDS | 40.0% | |
| GGTCAAGCTAACATTCTATC+AGG | - | chr4_4:69605740-69605759 | Msa0699060:intron | 40.0% | |
| GGTATCTTAGTGAAATTGGC+AGG | - | chr4_4:69605803-69605822 | Msa0699060:intron | 40.0% | |
| CAGTGGTGATCCTAATAAGA+AGG | - | chr4_4:69605994-69606013 | Msa0699060:intron | 40.0% | |
| !! | TGAGTGGTAATGGCACAAAA+TGG | - | chr4_4:69606125-69606144 | Msa0699060:CDS | 40.0% |
| !! | GAGTGGTAATGGCACAAAAT+GGG | - | chr4_4:69606126-69606145 | Msa0699060:CDS | 40.0% |
| CGAACATGACTAATCCGATT+AGG | + | chr4_4:69606181-69606200 | None:intergenic | 40.0% | |
| ! | GTCTGATAACGTTGTAGTTG+TGG | - | chr4_4:69606258-69606277 | Msa0699060:intron | 40.0% |
| GAGAGTGAGAAAGAAGCTAA+AGG | - | chr4_4:69606280-69606299 | Msa0699060:intron | 40.0% | |
| GATTGAAGGACTTGAAGTGA+AGG | + | chr4_4:69604359-69604378 | None:intergenic | 40.0% | |
| GTATTGTACCCGAGTGAATA+TGG | - | chr4_4:69604743-69604762 | Msa0699060:CDS | 40.0% | |
| TACTCTCTTCTGATCCTGTT+GGG | + | chr4_4:69604775-69604794 | None:intergenic | 40.0% | |
| !!! | TGATGCCATTTTGAAAGCAG+TGG | - | chr4_4:69604796-69604815 | Msa0699060:CDS | 40.0% |
| ATCCTCCACTGCTTTCAAAA+TGG | + | chr4_4:69604804-69604823 | None:intergenic | 40.0% | |
| ! | GTTGCAAAATGGTCTTGAAC+TGG | - | chr4_4:69604832-69604851 | Msa0699060:CDS | 40.0% |
| !! | AGAGCATCTGATACTTTTCC+TGG | - | chr4_4:69605299-69605318 | Msa0699060:CDS | 40.0% |
| GAGACATCCTCTTTGATTCA+AGG | - | chr4_4:69605453-69605472 | Msa0699060:CDS | 40.0% | |
| CTCTGTACCTTGAATCAAAG+AGG | + | chr4_4:69605463-69605482 | None:intergenic | 40.0% | |
| CTCTTTGATTCAAGGTACAG+AGG | - | chr4_4:69605461-69605480 | Msa0699060:CDS | 40.0% | |
| TTTGATTCAAGGTACAGAGG+AGG | - | chr4_4:69605464-69605483 | Msa0699060:CDS | 40.0% | |
| !! | TTTCACCACAGAAGGTATTC+TGG | - | chr4_4:69605544-69605563 | Msa0699060:CDS | 40.0% |
| ATGGTGAGAAGGACTATTCT+GGG | - | chr4_4:69605636-69605655 | Msa0699060:CDS | 40.0% | |
| GGTCAAGCTAACATTCTATC+AGG | - | chr4_4:69605740-69605759 | Msa0699060:intron | 40.0% | |
| GGTATCTTAGTGAAATTGGC+AGG | - | chr4_4:69605803-69605822 | Msa0699060:intron | 40.0% | |
| CAGTGGTGATCCTAATAAGA+AGG | - | chr4_4:69605994-69606013 | Msa0699060:intron | 40.0% | |
| !! | TGAGTGGTAATGGCACAAAA+TGG | - | chr4_4:69606125-69606144 | Msa0699060:CDS | 40.0% |
| !! | GAGTGGTAATGGCACAAAAT+GGG | - | chr4_4:69606126-69606145 | Msa0699060:CDS | 40.0% |
| CGAACATGACTAATCCGATT+AGG | + | chr4_4:69606181-69606200 | None:intergenic | 40.0% | |
| ! | GTCTGATAACGTTGTAGTTG+TGG | - | chr4_4:69606258-69606277 | Msa0699060:intron | 40.0% |
| GAGAGTGAGAAAGAAGCTAA+AGG | - | chr4_4:69606280-69606299 | Msa0699060:intron | 40.0% | |
| CTACTCTCTTCTGATCCTGT+TGG | + | chr4_4:69604776-69604795 | None:intergenic | 45.0% | |
| !!! | TGCCATTTTGAAAGCAGTGG+AGG | - | chr4_4:69604799-69604818 | Msa0699060:CDS | 45.0% |
| ! | AATGGTCTTGAACTGGTAGC+AGG | - | chr4_4:69604839-69604858 | Msa0699060:CDS | 45.0% |
| ! | ATGGTCTTGAACTGGTAGCA+GGG | - | chr4_4:69604840-69604859 | Msa0699060:CDS | 45.0% |
| CCACCTGGGAGTAAAGTAAT+TGG | + | chr4_4:69604926-69604945 | None:intergenic | 45.0% | |
| CCAATTACTTTACTCCCAGG+TGG | - | chr4_4:69604923-69604942 | Msa0699060:CDS | 45.0% | |
| ! | CTGATACTTTTCCTGGTGAC+CGG | - | chr4_4:69605306-69605325 | Msa0699060:CDS | 45.0% |
| ACCACATCTCAACTAGATGC+CGG | + | chr4_4:69605328-69605347 | None:intergenic | 45.0% | |
| ATGCAAGGTGGTAACTTCAG+TGG | - | chr4_4:69605383-69605402 | Msa0699060:CDS | 45.0% | |
| GAAGAAGCAGTTGTTGATCC+GGG | + | chr4_4:69605519-69605538 | None:intergenic | 45.0% | |
| GGAAGAAGCAGTTGTTGATC+CGG | + | chr4_4:69605520-69605539 | None:intergenic | 45.0% | |
| TTCCTGCATTTCACCACAGA+AGG | - | chr4_4:69605536-69605555 | Msa0699060:CDS | 45.0% | |
| TACCTTCTGTGGTGAAATGC+AGG | + | chr4_4:69605541-69605560 | None:intergenic | 45.0% | |
| CTGTACCAGAATACCTTCTG+TGG | + | chr4_4:69605552-69605571 | None:intergenic | 45.0% | |
| !! | GAAGGTATTCTGGTACAGCA+AGG | - | chr4_4:69605554-69605573 | Msa0699060:CDS | 45.0% |
| CTTGGACAACACTCAACAGT+TGG | - | chr4_4:69605605-69605624 | Msa0699060:CDS | 45.0% | |
| CAGAATAGTCCTTCTCACCA+TGG | + | chr4_4:69605637-69605656 | None:intergenic | 45.0% | |
| CATGGTGAGAAGGACTATTC+TGG | - | chr4_4:69605635-69605654 | Msa0699060:CDS | 45.0% | |
| TGGTGAGAAGGACTATTCTG+GGG | - | chr4_4:69605637-69605656 | Msa0699060:CDS | 45.0% | |
| ! | CACTGATGTGGCGATTTTCT+CGG | - | chr4_4:69605694-69605713 | Msa0699060:intron | 45.0% |
| ACCTCTTAGCACAATACCAG+TGG | + | chr4_4:69605723-69605742 | None:intergenic | 45.0% | |
| TGGCTCCCCTTGAGTATAAA+AGG | + | chr4_4:69606209-69606228 | None:intergenic | 45.0% | |
| CTACTCTCTTCTGATCCTGT+TGG | + | chr4_4:69604776-69604795 | None:intergenic | 45.0% | |
| !!! | TGCCATTTTGAAAGCAGTGG+AGG | - | chr4_4:69604799-69604818 | Msa0699060:CDS | 45.0% |
| ! | AATGGTCTTGAACTGGTAGC+AGG | - | chr4_4:69604839-69604858 | Msa0699060:CDS | 45.0% |
| ! | ATGGTCTTGAACTGGTAGCA+GGG | - | chr4_4:69604840-69604859 | Msa0699060:CDS | 45.0% |
| CCACCTGGGAGTAAAGTAAT+TGG | + | chr4_4:69604926-69604945 | None:intergenic | 45.0% | |
| CCAATTACTTTACTCCCAGG+TGG | - | chr4_4:69604923-69604942 | Msa0699060:CDS | 45.0% | |
| ! | CTGATACTTTTCCTGGTGAC+CGG | - | chr4_4:69605306-69605325 | Msa0699060:CDS | 45.0% |
| ACCACATCTCAACTAGATGC+CGG | + | chr4_4:69605328-69605347 | None:intergenic | 45.0% | |
| ATGCAAGGTGGTAACTTCAG+TGG | - | chr4_4:69605383-69605402 | Msa0699060:CDS | 45.0% | |
| GAAGAAGCAGTTGTTGATCC+GGG | + | chr4_4:69605519-69605538 | None:intergenic | 45.0% | |
| GGAAGAAGCAGTTGTTGATC+CGG | + | chr4_4:69605520-69605539 | None:intergenic | 45.0% | |
| TTCCTGCATTTCACCACAGA+AGG | - | chr4_4:69605536-69605555 | Msa0699060:CDS | 45.0% | |
| TACCTTCTGTGGTGAAATGC+AGG | + | chr4_4:69605541-69605560 | None:intergenic | 45.0% | |
| CTGTACCAGAATACCTTCTG+TGG | + | chr4_4:69605552-69605571 | None:intergenic | 45.0% | |
| !! | GAAGGTATTCTGGTACAGCA+AGG | - | chr4_4:69605554-69605573 | Msa0699060:CDS | 45.0% |
| CTTGGACAACACTCAACAGT+TGG | - | chr4_4:69605605-69605624 | Msa0699060:CDS | 45.0% | |
| CAGAATAGTCCTTCTCACCA+TGG | + | chr4_4:69605637-69605656 | None:intergenic | 45.0% | |
| CATGGTGAGAAGGACTATTC+TGG | - | chr4_4:69605635-69605654 | Msa0699060:CDS | 45.0% | |
| TGGTGAGAAGGACTATTCTG+GGG | - | chr4_4:69605637-69605656 | Msa0699060:CDS | 45.0% | |
| ! | CACTGATGTGGCGATTTTCT+CGG | - | chr4_4:69605694-69605713 | Msa0699060:intron | 45.0% |
| ACCTCTTAGCACAATACCAG+TGG | + | chr4_4:69605723-69605742 | None:intergenic | 45.0% | |
| TGGCTCCCCTTGAGTATAAA+AGG | + | chr4_4:69606209-69606228 | None:intergenic | 45.0% | |
| !! | AAAATATTTAAAAATTTCTT+GGG | + | chr4_4:69605021-69605040 | None:intergenic | 5.0% |
| !! | AAAAATATTTAAAAATTTCT+TGG | + | chr4_4:69605022-69605041 | None:intergenic | 5.0% |
| !! | AAAATATTTAAAAATTTCTT+GGG | + | chr4_4:69605021-69605040 | None:intergenic | 5.0% |
| !! | AAAAATATTTAAAAATTTCT+TGG | + | chr4_4:69605022-69605041 | None:intergenic | 5.0% |
| GCAACAACCAGCTAGTCCTT+TGG | - | chr4_4:69604600-69604619 | Msa0699060:three_prime_UTR | 50.0% | |
| ! | GAAGTAGGTGGTGATGCCAA+AGG | + | chr4_4:69604619-69604638 | None:intergenic | 50.0% |
| GGTCTGCACCATATTCACTC+GGG | + | chr4_4:69604754-69604773 | None:intergenic | 50.0% | |
| GGGTCTGCACCATATTCACT+CGG | + | chr4_4:69604755-69604774 | None:intergenic | 50.0% | |
| GAATATGGTGCAGACCCAAC+AGG | - | chr4_4:69604758-69604777 | Msa0699060:CDS | 50.0% | |
| ! | TGGTCTTGAACTGGTAGCAG+GGG | - | chr4_4:69604841-69604860 | Msa0699060:CDS | 50.0% |
| GTAGCAGGGGTGAGTGATTT+GGG | - | chr4_4:69604854-69604873 | Msa0699060:CDS | 50.0% | |
| TCACCACAACATTGCCACCT+GGG | + | chr4_4:69604940-69604959 | None:intergenic | 50.0% | |
| ACCGGCATCTAGTTGAGATG+TGG | - | chr4_4:69605324-69605343 | Msa0699060:CDS | 50.0% | |
| GATTCAAGGTACAGAGGAGG+AGG | - | chr4_4:69605467-69605486 | Msa0699060:CDS | 50.0% | |
| !! | TCGTTGATTCCGCTAGAACC+CGG | - | chr4_4:69605498-69605517 | Msa0699060:CDS | 50.0% |
| ! | GTTGTTGATCCGGGTTCTAG+CGG | + | chr4_4:69605510-69605529 | None:intergenic | 50.0% |
| GGACAACACTCAACAGTTGG+TGG | - | chr4_4:69605608-69605627 | Msa0699060:CDS | 50.0% | |
| !! | TCAACAGTTGGTGGTGACCA+TGG | - | chr4_4:69605617-69605636 | Msa0699060:CDS | 50.0% |
| CGACAATGCAGTCACTGATG+TGG | - | chr4_4:69605682-69605701 | Msa0699060:intron | 50.0% | |
| GCCACTGGTATTGTGCTAAG+AGG | - | chr4_4:69605719-69605738 | Msa0699060:intron | 50.0% | |
| AACAAAGCAGCAGGATTCGG+TGG | - | chr4_4:69605776-69605795 | Msa0699060:intron | 50.0% | |
| ATGGGCTTGAGATCAACAGC+TGG | - | chr4_4:69606091-69606110 | Msa0699060:CDS | 50.0% | |
| TGGGCTTGAGATCAACAGCT+GGG | - | chr4_4:69606092-69606111 | Msa0699060:CDS | 50.0% | |
| GCTGGGAAGTTAACTGTGAG+TGG | - | chr4_4:69606109-69606128 | Msa0699060:CDS | 50.0% | |
| GCAACAACCAGCTAGTCCTT+TGG | - | chr4_4:69604600-69604619 | Msa0699060:three_prime_UTR | 50.0% | |
| ! | GAAGTAGGTGGTGATGCCAA+AGG | + | chr4_4:69604619-69604638 | None:intergenic | 50.0% |
| GGTCTGCACCATATTCACTC+GGG | + | chr4_4:69604754-69604773 | None:intergenic | 50.0% | |
| GGGTCTGCACCATATTCACT+CGG | + | chr4_4:69604755-69604774 | None:intergenic | 50.0% | |
| GAATATGGTGCAGACCCAAC+AGG | - | chr4_4:69604758-69604777 | Msa0699060:CDS | 50.0% | |
| ! | TGGTCTTGAACTGGTAGCAG+GGG | - | chr4_4:69604841-69604860 | Msa0699060:CDS | 50.0% |
| GTAGCAGGGGTGAGTGATTT+GGG | - | chr4_4:69604854-69604873 | Msa0699060:CDS | 50.0% | |
| TCACCACAACATTGCCACCT+GGG | + | chr4_4:69604940-69604959 | None:intergenic | 50.0% | |
| ACCGGCATCTAGTTGAGATG+TGG | - | chr4_4:69605324-69605343 | Msa0699060:CDS | 50.0% | |
| GATTCAAGGTACAGAGGAGG+AGG | - | chr4_4:69605467-69605486 | Msa0699060:CDS | 50.0% | |
| !! | TCGTTGATTCCGCTAGAACC+CGG | - | chr4_4:69605498-69605517 | Msa0699060:CDS | 50.0% |
| ! | GTTGTTGATCCGGGTTCTAG+CGG | + | chr4_4:69605510-69605529 | None:intergenic | 50.0% |
| GGACAACACTCAACAGTTGG+TGG | - | chr4_4:69605608-69605627 | Msa0699060:CDS | 50.0% | |
| !! | TCAACAGTTGGTGGTGACCA+TGG | - | chr4_4:69605617-69605636 | Msa0699060:CDS | 50.0% |
| CGACAATGCAGTCACTGATG+TGG | - | chr4_4:69605682-69605701 | Msa0699060:intron | 50.0% | |
| GCCACTGGTATTGTGCTAAG+AGG | - | chr4_4:69605719-69605738 | Msa0699060:intron | 50.0% | |
| AACAAAGCAGCAGGATTCGG+TGG | - | chr4_4:69605776-69605795 | Msa0699060:intron | 50.0% | |
| ATGGGCTTGAGATCAACAGC+TGG | - | chr4_4:69606091-69606110 | Msa0699060:CDS | 50.0% | |
| TGGGCTTGAGATCAACAGCT+GGG | - | chr4_4:69606092-69606111 | Msa0699060:CDS | 50.0% | |
| GCTGGGAAGTTAACTGTGAG+TGG | - | chr4_4:69606109-69606128 | Msa0699060:CDS | 50.0% | |
| ! | GGTGATGCCAAAGGACTAGC+TGG | + | chr4_4:69604610-69604629 | None:intergenic | 55.0% |
| GGTAGCAGGGGTGAGTGATT+TGG | - | chr4_4:69604853-69604872 | Msa0699060:CDS | 55.0% | |
| ACTCCCAGGTGGCAATGTTG+TGG | - | chr4_4:69604934-69604953 | Msa0699060:CDS | 55.0% | |
| CTCACCACAACATTGCCACC+TGG | + | chr4_4:69604941-69604960 | None:intergenic | 55.0% | |
| GTAGGTGCACACACGTGATG+TGG | + | chr4_4:69605201-69605220 | None:intergenic | 55.0% | |
| TCAACTAGATGCCGGTCACC+AGG | + | chr4_4:69605320-69605339 | None:intergenic | 55.0% | |
| ! | TGGTGGTGACCATGGTGAGA+AGG | - | chr4_4:69605625-69605644 | Msa0699060:CDS | 55.0% |
| !! | GCAGCAGGATTCGGTGGTAT+AGG | - | chr4_4:69605782-69605801 | Msa0699060:intron | 55.0% |
| ! | GGTGATGCCAAAGGACTAGC+TGG | + | chr4_4:69604610-69604629 | None:intergenic | 55.0% |
| GGTAGCAGGGGTGAGTGATT+TGG | - | chr4_4:69604853-69604872 | Msa0699060:CDS | 55.0% | |
| ACTCCCAGGTGGCAATGTTG+TGG | - | chr4_4:69604934-69604953 | Msa0699060:CDS | 55.0% | |
| CTCACCACAACATTGCCACC+TGG | + | chr4_4:69604941-69604960 | None:intergenic | 55.0% | |
| GTAGGTGCACACACGTGATG+TGG | + | chr4_4:69605201-69605220 | None:intergenic | 55.0% | |
| TCAACTAGATGCCGGTCACC+AGG | + | chr4_4:69605320-69605339 | None:intergenic | 55.0% | |
| ! | TGGTGGTGACCATGGTGAGA+AGG | - | chr4_4:69605625-69605644 | Msa0699060:CDS | 55.0% |
| !! | GCAGCAGGATTCGGTGGTAT+AGG | - | chr4_4:69605782-69605801 | Msa0699060:intron | 55.0% |
| ! | GCAGGGGTGAGTGATTTGGG+AGG | - | chr4_4:69604857-69604876 | Msa0699060:CDS | 60.0% |
| ! | GCGATTTTCTCGGCAGCCAC+TGG | - | chr4_4:69605704-69605723 | Msa0699060:intron | 60.0% |
| ! | GCAGGGGTGAGTGATTTGGG+AGG | - | chr4_4:69604857-69604876 | Msa0699060:CDS | 60.0% |
| ! | GCGATTTTCTCGGCAGCCAC+TGG | - | chr4_4:69605704-69605723 | Msa0699060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 69604357 | 69606601 | 69604357 | ID=Msa0699060;Name=Msa0699060 |
| chr4_4 | mRNA | 69604357 | 69606601 | 69604357 | ID=Msa0699060-mRNA-1;Parent=Msa0699060;Name=Msa0699060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127|1|1|1|1|1|3|271|480 |
| chr4_4 | exon | 69604357 | 69605677 | 69604357 | ID=Msa0699060-mRNA-1:exon:20921;Parent=Msa0699060-mRNA-1 |
| chr4_4 | exon | 69606003 | 69606224 | 69606003 | ID=Msa0699060-mRNA-1:exon:20920;Parent=Msa0699060-mRNA-1 |
| chr4_4 | exon | 69606304 | 69606601 | 69606304 | ID=Msa0699060-mRNA-1:exon:20919;Parent=Msa0699060-mRNA-1 |
| chr4_4 | five_prime_UTR | 69606475 | 69606601 | 69606475 | ID=Msa0699060-mRNA-1:five_prime_utr;Parent=Msa0699060-mRNA-1 |
| chr4_4 | CDS | 69606304 | 69606474 | 69606304 | ID=Msa0699060-mRNA-1:cds;Parent=Msa0699060-mRNA-1 |
| chr4_4 | CDS | 69606003 | 69606224 | 69606003 | ID=Msa0699060-mRNA-1:cds;Parent=Msa0699060-mRNA-1 |
| chr4_4 | CDS | 69604628 | 69605677 | 69604628 | ID=Msa0699060-mRNA-1:cds;Parent=Msa0699060-mRNA-1 |
| chr4_4 | three_prime_UTR | 69604357 | 69604627 | 69604357 | ID=Msa0699060-mRNA-1:three_prime_utr;Parent=Msa0699060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
