Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599350 | XP_013455559.1 | 88.926 | 596 | 31 | 1 | 1 | 561 | 1 | 596 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599350 | sp|Q43077|AMO_PEA | 78.559 | 597 | 92 | 3 | 1 | 561 | 1 | 597 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599350 | A0A072UUP2 | 88.926 | 596 | 31 | 1 | 1 | 561 | 1 | 596 | 0.0 | 1091 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0543390 | Msa0599350 | 0.819216 | 1.305047e-52 | -8.615850e-47 |
| Msa0599350 | Msa1134830 | 0.804611 | 1.988096e-49 | -8.615850e-47 |
| Msa0599350 | Msa1229880 | 0.805091 | 1.577701e-49 | -8.615850e-47 |
| Msa0599350 | Msa1310620 | 0.807474 | 4.965751e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599350 | MtrunA17_Chr4g0065961 | 81.557 | 591 | 73 | 2 | 7 | 561 | 1 | 591 | 0.0 | 988 |
| Msa0599350 | MtrunA17_Chr4g0065981 | 77.592 | 598 | 97 | 3 | 1 | 561 | 1 | 598 | 0.0 | 966 |
| Msa0599350 | MtrunA17_Chr4g0065991 | 82.135 | 431 | 77 | 0 | 131 | 561 | 1 | 431 | 0.0 | 753 |
| Msa0599350 | MtrunA17_Chr4g0023331 | 96.096 | 333 | 13 | 0 | 228 | 560 | 5 | 337 | 0.0 | 667 |
| Msa0599350 | MtrunA17_Chr1g0205571 | 52.525 | 594 | 239 | 4 | 7 | 560 | 5 | 595 | 0.0 | 639 |
| Msa0599350 | MtrunA17_Chr1g0205541 | 41.856 | 571 | 285 | 5 | 30 | 560 | 32 | 595 | 2.53e-172 | 503 |
| Msa0599350 | MtrunA17_Chr3g0119641 | 40.559 | 572 | 295 | 9 | 31 | 558 | 77 | 647 | 1.60e-150 | 449 |
| Msa0599350 | MtrunA17_Chr4g0023321 | 79.848 | 263 | 18 | 1 | 1 | 228 | 1 | 263 | 1.78e-148 | 427 |
| Msa0599350 | MtrunA17_Chr3g0117081 | 26.955 | 486 | 323 | 12 | 90 | 557 | 198 | 669 | 1.74e-54 | 197 |
| Msa0599350 | MtrunA17_Chr5g0412801 | 26.395 | 466 | 317 | 10 | 107 | 557 | 187 | 641 | 9.05e-49 | 180 |
| Msa0599350 | MtrunA17_Chr8g0368011 | 28.652 | 356 | 220 | 10 | 107 | 445 | 224 | 562 | 2.59e-41 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599350 | AT1G31690.1 | 46.316 | 570 | 265 | 6 | 32 | 560 | 27 | 596 | 0.0 | 538 |
| Msa0599350 | AT1G31710.1 | 46.167 | 574 | 265 | 8 | 31 | 560 | 27 | 600 | 0.0 | 533 |
| Msa0599350 | AT4G14940.1 | 41.624 | 591 | 294 | 6 | 13 | 560 | 4 | 586 | 1.05e-175 | 512 |
| Msa0599350 | AT1G31670.1 | 44.056 | 572 | 261 | 9 | 32 | 561 | 107 | 661 | 1.95e-168 | 496 |
| Msa0599350 | AT4G12290.2 | 40.102 | 586 | 293 | 12 | 24 | 557 | 76 | 655 | 3.08e-148 | 442 |
| Msa0599350 | AT4G12290.1 | 40.102 | 586 | 293 | 12 | 24 | 557 | 76 | 655 | 2.69e-147 | 442 |
| Msa0599350 | AT1G62810.1 | 39.860 | 572 | 298 | 12 | 31 | 558 | 59 | 628 | 1.84e-140 | 424 |
| Msa0599350 | AT3G43670.1 | 39.054 | 571 | 302 | 13 | 32 | 558 | 41 | 609 | 1.06e-136 | 413 |
| Msa0599350 | AT4G12270.1 | 35.602 | 382 | 182 | 11 | 24 | 348 | 78 | 452 | 2.27e-70 | 234 |
| Msa0599350 | AT4G12280.1 | 43.333 | 210 | 111 | 2 | 356 | 557 | 5 | 214 | 8.00e-55 | 187 |
| Msa0599350 | AT2G42490.1 | 27.039 | 466 | 314 | 11 | 107 | 557 | 222 | 676 | 1.07e-49 | 184 |
Find 108 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACTCTTCTTTGGTTAA+AGG | 0.184536 | 4_2:-38689660 | None:intergenic |
| CAAGCACAATGATGAGATTA+AGG | 0.233469 | 4_2:+38694187 | Msa0599350:CDS |
| GGGAGAATTATATGGTAAAT+TGG | 0.270462 | 4_2:+38694208 | Msa0599350:CDS |
| TTGGAGAAGAAGAGAGTAAA+AGG | 0.281690 | 4_2:+38690059 | Msa0599350:CDS |
| TGACATGTTCACAAGGGATA+TGG | 0.288741 | 4_2:+38689899 | Msa0599350:intron |
| CTTGCAAGACTATGCTGTTT+TGG | 0.293628 | 4_2:-38690271 | None:intergenic |
| CATTTACCAATTATAATGTT+TGG | 0.296138 | 4_2:+38694570 | Msa0599350:CDS |
| ATCAGGTATACTGGAAATTA+AGG | 0.301138 | 4_2:+38694154 | Msa0599350:CDS |
| GACAGTTAGAAACTCTTCTT+TGG | 0.305096 | 4_2:-38689667 | None:intergenic |
| AAAGTAGCTTTCCACTATAT+TGG | 0.310445 | 4_2:+38689729 | Msa0599350:CDS |
| TGTGATCCAAACATTATAAT+TGG | 0.311141 | 4_2:-38694576 | None:intergenic |
| ATTATTCTTACAAATTCATT+AGG | 0.317904 | 4_2:-38693017 | None:intergenic |
| CCATTCTCCATGGGATGGTT+TGG | 0.335288 | 4_2:+38690040 | Msa0599350:CDS |
| TTAACAATGGTTGCTGATCT+TGG | 0.335978 | 4_2:+38690148 | Msa0599350:CDS |
| GGCTGAGAACACTGAATATA+AGG | 0.350226 | 4_2:+38690222 | Msa0599350:CDS |
| ATAGTTTCCAACGGTGACTA+TGG | 0.356435 | 4_2:-38693179 | None:intergenic |
| ACATTACTTACTTAACACTA+TGG | 0.364250 | 4_2:-38690330 | None:intergenic |
| ATTTGTTATGAACTAAGGTT+TGG | 0.369516 | 4_2:-38689689 | None:intergenic |
| ACCATTGTTAATCCACTAAT+AGG | 0.372587 | 4_2:-38690136 | None:intergenic |
| AAAATTCTTCTGATGGATCT+TGG | 0.375944 | 4_2:-38692788 | None:intergenic |
| CTGATATTTGTTATGAACTA+AGG | 0.379361 | 4_2:-38689694 | None:intergenic |
| AGTGAATGAGTAGGAATTGC+TGG | 0.381453 | 4_2:-38694512 | None:intergenic |
| TTGAATATATAATCTTTGTC+GGG | 0.397198 | 4_2:-38689762 | None:intergenic |
| GATAGCACTATCAGGTATAC+TGG | 0.397693 | 4_2:+38694145 | Msa0599350:intron |
| AAAGCTACTTTGTTCTTTGA+GGG | 0.401086 | 4_2:-38689717 | None:intergenic |
| AATACTTACCGAGGGCTTGA+TGG | 0.401597 | 4_2:-38693239 | None:intergenic |
| GAGATTAAGGGAGAATTATA+TGG | 0.405083 | 4_2:+38694200 | Msa0599350:CDS |
| GAAAGCTACTTTGTTCTTTG+AGG | 0.405262 | 4_2:-38689718 | None:intergenic |
| CAAGATAGTAAATGTAGAAA+TGG | 0.407399 | 4_2:-38694262 | None:intergenic |
| GAATCAAACGGTATCCGATA+TGG | 0.411746 | 4_2:-38694490 | None:intergenic |
| TCTATACAGATAGCACTATC+AGG | 0.413442 | 4_2:+38694137 | Msa0599350:intron |
| TCAAAACAAAGCCCACCATT+TGG | 0.419693 | 4_2:+38690247 | Msa0599350:CDS |
| ACATATATTCACTCTGTAGA+TGG | 0.423715 | 4_2:+38692912 | Msa0599350:CDS |
| GTTTATTCAGTTGGGCCAAT+TGG | 0.423987 | 4_2:+38692637 | Msa0599350:intron |
| GACTCTATGTTGATCATTGT+TGG | 0.426344 | 4_2:+38694630 | Msa0599350:CDS |
| TTTGAATATATAATCTTTGT+CGG | 0.437747 | 4_2:-38689763 | None:intergenic |
| AATGCGGTTGGAAACCATAT+CGG | 0.443616 | 4_2:+38694476 | Msa0599350:CDS |
| TTCGTAGAGTATTATACAAA+GGG | 0.445735 | 4_2:+38692739 | Msa0599350:CDS |
| GTAAATGCACCGCGTATTTG+TGG | 0.451697 | 4_2:-38694554 | None:intergenic |
| AATCTTTGTCGGGGTCATCT+AGG | 0.454398 | 4_2:-38689752 | None:intergenic |
| GCCAATTGGAAGTTTCATAT+AGG | 0.459334 | 4_2:+38692651 | Msa0599350:CDS |
| ACTTCCATCTGTGATTCTTA+CGG | 0.461345 | 4_2:-38694336 | None:intergenic |
| TTAAAGTAAAATTCTTCTGA+TGG | 0.462310 | 4_2:-38692795 | None:intergenic |
| AACAATATGGTAGTATTATG+TGG | 0.465492 | 4_2:+38692973 | Msa0599350:CDS |
| CCAAACCATCCCATGGAGAA+TGG | 0.469490 | 4_2:-38690040 | None:intergenic |
| TCCTATATGAAACTTCCAAT+TGG | 0.475368 | 4_2:-38692652 | None:intergenic |
| ATATTTCAATGGAAGCTTTG+TGG | 0.478356 | 4_2:-38689957 | None:intergenic |
| GGTCCTGGCTTCTTGATCAA+TGG | 0.482633 | 4_2:+38690307 | Msa0599350:CDS |
| TCTTCTGATGGATCTTGGTA+TGG | 0.486422 | 4_2:-38692783 | None:intergenic |
| AAGCACAATGATGAGATTAA+GGG | 0.489295 | 4_2:+38694188 | Msa0599350:CDS |
| AGTCATCAACCTCATGGTCC+TGG | 0.502438 | 4_2:+38690292 | Msa0599350:CDS |
| GGTTGCTGATCTTGGACTCA+TGG | 0.504403 | 4_2:+38690156 | Msa0599350:CDS |
| TAAACACAAATTCCCATGTT+GGG | 0.509391 | 4_2:+38694681 | Msa0599350:three_prime_UTR |
| TATTTGTGGATAATCATCTT+CGG | 0.512811 | 4_2:-38694540 | None:intergenic |
| TTGGTATCAGCAAACAGCAT+TGG | 0.517312 | 4_2:+38694227 | Msa0599350:CDS |
| ATGAAAGGAGGATATTTCAA+TGG | 0.522174 | 4_2:-38689968 | None:intergenic |
| GGTCATCTAGGCCAATATAG+TGG | 0.536518 | 4_2:-38689740 | None:intergenic |
| AGTGGAAGTCCCACATCGGA+TGG | 0.536568 | 4_2:+38694732 | Msa0599350:three_prime_UTR |
| TGTGGTGGACAATCACGGTT+AGG | 0.538796 | 4_2:-38692873 | None:intergenic |
| CAAGTGGATGTTGATGCAAT+GGG | 0.539665 | 4_2:-38689635 | None:intergenic |
| AGACCACTGCTTGGAAGTAG+AGG | 0.540355 | 4_2:-38689605 | None:intergenic |
| AATCACAATTGGGTCTGCCC+CGG | 0.540808 | 4_2:+38694421 | Msa0599350:CDS |
| GTGCTCCATTCTCCATGGGA+TGG | 0.547411 | 4_2:+38690035 | Msa0599350:CDS |
| TTAATCACGACTAGTTCAGC+CGG | 0.551056 | 4_2:-38694440 | None:intergenic |
| TTCTTCTCCAAACCATCCCA+TGG | 0.551724 | 4_2:-38690047 | None:intergenic |
| TAGGAATTGCTGGAATCAAA+CGG | 0.557868 | 4_2:-38694502 | None:intergenic |
| TTTCGTAGAGTATTATACAA+AGG | 0.560841 | 4_2:+38692738 | Msa0599350:CDS |
| TAATCACGACTAGTTCAGCC+GGG | 0.563831 | 4_2:-38694439 | None:intergenic |
| GATTGGGAGTTCAAAACAAG+TGG | 0.565272 | 4_2:+38693214 | Msa0599350:CDS |
| AACACTAGTTCTACCCAACA+TGG | 0.565751 | 4_2:-38694694 | None:intergenic |
| AGTGTGTGCTCCATTCTCCA+TGG | 0.568861 | 4_2:+38690030 | Msa0599350:CDS |
| CACAAATCGCATTCTTCAAG+AGG | 0.573831 | 4_2:-38692944 | None:intergenic |
| AGTAAATGTAGAAATGGTCA+TGG | 0.576017 | 4_2:-38694256 | None:intergenic |
| TTCAGTGAAGCAATGAAAGG+AGG | 0.577218 | 4_2:-38689980 | None:intergenic |
| AGAAATTGAAGTTGTGCCTA+CGG | 0.578180 | 4_2:+38690201 | Msa0599350:CDS |
| TCTTTGGTTAAAGGATCAAG+TGG | 0.581061 | 4_2:-38689651 | None:intergenic |
| CTAAACACAAATTCCCATGT+TGG | 0.582034 | 4_2:+38694680 | Msa0599350:three_prime_UTR |
| ATAGGATTTGATGTACGAGC+TGG | 0.583714 | 4_2:+38692669 | Msa0599350:CDS |
| CTTGCAAGTCATCAACCTCA+TGG | 0.583899 | 4_2:+38690286 | Msa0599350:CDS |
| TCAAGTGGATGTTGATGCAA+TGG | 0.584812 | 4_2:-38689636 | None:intergenic |
| TGGCCATTGATCAAGAAGCC+AGG | 0.591551 | 4_2:-38690310 | None:intergenic |
| AACATTGTCATAGTTTCCAA+CGG | 0.593674 | 4_2:-38693188 | None:intergenic |
| GCCTATTAGTGGATTAACAA+TGG | 0.596660 | 4_2:+38690135 | Msa0599350:CDS |
| AAGTGGTTCCATCAAGCCCT+CGG | 0.599683 | 4_2:+38693231 | Msa0599350:CDS |
| GAGCGTGTGGTGGACAATCA+CGG | 0.605614 | 4_2:-38692878 | None:intergenic |
| TGAATATATAATCTTTGTCG+GGG | 0.606417 | 4_2:-38689761 | None:intergenic |
| TCGAACAATCAAATTCACTT+CGG | 0.610212 | 4_2:-38693155 | None:intergenic |
| GTTCGAACCATAGTCACCGT+TGG | 0.612850 | 4_2:+38693172 | Msa0599350:CDS |
| ATCGCATTCTTCAAGAGGCG+TGG | 0.621173 | 4_2:-38692939 | None:intergenic |
| GGGTTACAGAGACCACTGCT+TGG | 0.623059 | 4_2:-38689614 | None:intergenic |
| ATGTTATCTCTTGAGGAACA+AGG | 0.623725 | 4_2:+38689929 | Msa0599350:CDS |
| TATTCAGTGTTCTCAGCCGT+AGG | 0.626136 | 4_2:-38690217 | None:intergenic |
| GTGTGTGCTCCATTCTCCAT+GGG | 0.629566 | 4_2:+38690031 | Msa0599350:CDS |
| TCGGTTAGAAGTGAATGAGT+AGG | 0.631827 | 4_2:-38694521 | None:intergenic |
| TGTTCCTCAAGAGATAACAT+AGG | 0.638410 | 4_2:-38689926 | None:intergenic |
| GTTAGGTATCAAAGAAACAG+TGG | 0.640377 | 4_2:-38692856 | None:intergenic |
| AAAACCGTAAGAATCACAGA+TGG | 0.640824 | 4_2:+38694332 | Msa0599350:CDS |
| GTGTGTGTTCCATCCGATGT+GGG | 0.645480 | 4_2:-38694741 | None:intergenic |
| TGTGTGTGTTCCATCCGATG+TGG | 0.648958 | 4_2:-38694742 | None:intergenic |
| ATCAAGAAGCCAGGACCATG+AGG | 0.651972 | 4_2:-38690301 | None:intergenic |
| GATCATTGTTGGAACATGTG+TGG | 0.656883 | 4_2:+38694641 | Msa0599350:CDS |
| TCAATGAAATGAGCGTGTGG+TGG | 0.671621 | 4_2:-38692888 | None:intergenic |
| ACTCCTCTACTTCCAAGCAG+TGG | 0.680607 | 4_2:+38689602 | Msa0599350:CDS |
| ACACTAGTTCTACCCAACAT+GGG | 0.697627 | 4_2:-38694693 | None:intergenic |
| AATCACGACTAGTTCAGCCG+GGG | 0.722206 | 4_2:-38694438 | None:intergenic |
| GTATCAATGAAATGAGCGTG+TGG | 0.729682 | 4_2:-38692891 | None:intergenic |
| AAGTGGATGTTGATGCAATG+GGG | 0.761788 | 4_2:-38689634 | None:intergenic |
| GATGATTATCCACAAATACG+CGG | 0.772031 | 4_2:+38694545 | Msa0599350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTTTTTTAAATATAA+TGG | + | chr4_2:38692350-38692369 | Msa0599350:intron | 0.0% |
| !!! | TTTATTTTTTTTTTTTTTTT+TGG | + | chr4_2:38694002-38694021 | Msa0599350:intron | 0.0% |
| !!! | CAACAATTTTTTTTTTTTAA+GGG | + | chr4_2:38691346-38691365 | Msa0599350:intron | 10.0% |
| !!! | ATATTTAGAGTTTTTTAAAT+TGG | - | chr4_2:38691814-38691833 | None:intergenic | 10.0% |
| !! | GATAAAATATAATTATTGTA+TGG | + | chr4_2:38691949-38691968 | Msa0599350:intron | 10.0% |
| !! | AAGATTAAAATAAATTACAA+CGG | + | chr4_2:38692159-38692178 | Msa0599350:intron | 10.0% |
| !! | GATAAAATATAATTATTGTA+TGG | + | chr4_2:38691949-38691968 | Msa0599350:intron | 10.0% |
| !!! | TTACAATATTTTTTTTGATA+AGG | - | chr4_2:38693947-38693966 | None:intergenic | 10.0% |
| !! | TTTGAATATATAATCTTTGT+CGG | - | chr4_2:38689766-38689785 | None:intergenic | 15.0% |
| !! | AATTGTAAATAGTATATTGA+TGG | + | chr4_2:38690403-38690422 | Msa0599350:intron | 15.0% |
| !! | AAAAAAAAAAAATTGTTGCA+TGG | - | chr4_2:38691344-38691363 | None:intergenic | 15.0% |
| !!! | GCAACAATTTTTTTTTTTTA+AGG | + | chr4_2:38691345-38691364 | Msa0599350:intron | 15.0% |
| !!! | TTATATGAATAAATTTTGCA+AGG | - | chr4_2:38691764-38691783 | None:intergenic | 15.0% |
| !! | CTTAAAAATAAATAAGACTA+GGG | + | chr4_2:38691861-38691880 | Msa0599350:intron | 15.0% |
| !! | TCAAAAACAATAATCATATT+TGG | - | chr4_2:38691914-38691933 | None:intergenic | 15.0% |
| !! | GTATATGTATCTAAATAATA+TGG | - | chr4_2:38691989-38692008 | None:intergenic | 15.0% |
| !! | TGTATAATTCTATAATCTAT+TGG | + | chr4_2:38692375-38692394 | Msa0599350:intron | 15.0% |
| !! | GTATATGTATCTAAATAATA+TGG | - | chr4_2:38691989-38692008 | None:intergenic | 15.0% |
| !! | AAGTTATAAATGAAAAAAGA+TGG | - | chr4_2:38692539-38692558 | None:intergenic | 15.0% |
| !!! | AAACTTTATGATTTAATTTC+TGG | + | chr4_2:38692569-38692588 | Msa0599350:intron | 15.0% |
| !! | ATTATTCTTACAAATTCATT+AGG | - | chr4_2:38693020-38693039 | None:intergenic | 15.0% |
| !!! | ATAAACAAATATCTTTTTTG+TGG | + | chr4_2:38693471-38693490 | Msa0599350:intron | 15.0% |
| !! | AAAAATAAATTCACAAAAAG+AGG | + | chr4_2:38693662-38693681 | Msa0599350:intron | 15.0% |
| !! | AAAATAAATTCACAAAAAGA+GGG | + | chr4_2:38693663-38693682 | Msa0599350:intron | 15.0% |
| !! | ATATAATAGAACTGAAAAAT+GGG | + | chr4_2:38694601-38694620 | Msa0599350:CDS | 15.0% |
| !! | AGAAAAAAACAAGTTTCATA+GGG | - | chr4_2:38689572-38689591 | None:intergenic | 20.0% |
| !! | TTGAATATATAATCTTTGTC+GGG | - | chr4_2:38689765-38689784 | None:intergenic | 20.0% |
| !! | TTATATCAATTACTATCTCA+TGG | - | chr4_2:38689860-38689879 | None:intergenic | 20.0% |
| !! | ATGAGATAGTAATTGATATA+AGG | + | chr4_2:38689859-38689878 | Msa0599350:intron | 20.0% |
| !!! | CTTTTTTACTTTCCATATTT+AGG | + | chr4_2:38690360-38690379 | Msa0599350:intron | 20.0% |
| !! | CTATTTACAATTTCGTAATA+AGG | - | chr4_2:38690395-38690414 | None:intergenic | 20.0% |
| !! | TTAAAAATAAGGACACTTTA+AGG | - | chr4_2:38690603-38690622 | None:intergenic | 20.0% |
| !!! | TAAAATCAACTCTAAAGATT+TGG | - | chr4_2:38690956-38690975 | None:intergenic | 20.0% |
| !! | TGCCCAATATTATTTAAAAA+GGG | + | chr4_2:38691107-38691126 | Msa0599350:intron | 20.0% |
| !!! | CTCCCTTTTTAAATAATATT+GGG | - | chr4_2:38691112-38691131 | None:intergenic | 20.0% |
| !!! | TCTCCCTTTTTAAATAATAT+TGG | - | chr4_2:38691113-38691132 | None:intergenic | 20.0% |
| !! | CATATATGACCATTAATATA+GGG | - | chr4_2:38691622-38691641 | None:intergenic | 20.0% |
| !! | ACATATATGACCATTAATAT+AGG | - | chr4_2:38691623-38691642 | None:intergenic | 20.0% |
| !!! | TGGATATTTTACATATTACA+AGG | - | chr4_2:38691794-38691813 | None:intergenic | 20.0% |
| !!! | CCTAGTCTTATTTATTTTTA+AGG | - | chr4_2:38691863-38691882 | None:intergenic | 20.0% |
| !! | CCTTAAAAATAAATAAGACT+AGG | + | chr4_2:38691860-38691879 | Msa0599350:intron | 20.0% |
| !!! | ATATGATTATTGTTTTTGAG+TGG | + | chr4_2:38691915-38691934 | Msa0599350:intron | 20.0% |
| !! | ATAAATGAAAAAAGATGGAA+AGG | - | chr4_2:38692031-38692050 | None:intergenic | 20.0% |
| !! | CCAATATAAATGAAAAAAGA+TGG | - | chr4_2:38692036-38692055 | None:intergenic | 20.0% |
| !!! | CCATCTTTTTTCATTTATAT+TGG | + | chr4_2:38692033-38692052 | Msa0599350:intron | 20.0% |
| !! | CTAGTAAAATATATAGTTAC+AGG | + | chr4_2:38692209-38692228 | Msa0599350:intron | 20.0% |
| !! | TAATTCTATAATCTATTGGT+TGG | + | chr4_2:38692379-38692398 | Msa0599350:intron | 20.0% |
| !! | ATAAATGAAAAAAGATGGAA+AGG | - | chr4_2:38692031-38692050 | None:intergenic | 20.0% |
| !! | TTAAAGTAAAATTCTTCTGA+TGG | - | chr4_2:38692798-38692817 | None:intergenic | 20.0% |
| !!! | ATTTGTGTTTTTGAACAATA+TGG | + | chr4_2:38692960-38692979 | Msa0599350:CDS | 20.0% |
| !!! | TCTCTTTGTTTTATTGTTTT+TGG | + | chr4_2:38693113-38693132 | Msa0599350:intron | 20.0% |
| !! | TTTAATTAAATACTTACCGA+GGG | - | chr4_2:38693250-38693269 | None:intergenic | 20.0% |
| !! | ACTATTTAAACTTTCAAAAG+TGG | + | chr4_2:38693361-38693380 | Msa0599350:intron | 20.0% |
| !!! | TAAGACATAATATCATTTTG+TGG | + | chr4_2:38693443-38693462 | Msa0599350:intron | 20.0% |
| !! | TAATTCGAACAAAAAAAATG+CGG | + | chr4_2:38694460-38694479 | Msa0599350:CDS | 20.0% |
| !! | CATTTACCAATTATAATGTT+TGG | + | chr4_2:38694570-38694589 | Msa0599350:CDS | 20.0% |
| !!! | CATTTTTCAGTTCTATTATA+TGG | - | chr4_2:38694602-38694621 | None:intergenic | 20.0% |
| !! | CATATAATAGAACTGAAAAA+TGG | + | chr4_2:38694600-38694619 | Msa0599350:CDS | 20.0% |
| ! | GAAAAAAACAAGTTTCATAG+GGG | - | chr4_2:38689571-38689590 | None:intergenic | 25.0% |
| ! | GAGAAAAAAACAAGTTTCAT+AGG | - | chr4_2:38689573-38689592 | None:intergenic | 25.0% |
| !!! | ATTTGTTATGAACTAAGGTT+TGG | - | chr4_2:38689692-38689711 | None:intergenic | 25.0% |
| !!! | CTGATATTTGTTATGAACTA+AGG | - | chr4_2:38689697-38689716 | None:intergenic | 25.0% |
| ! | TGAATATATAATCTTTGTCG+GGG | - | chr4_2:38689764-38689783 | None:intergenic | 25.0% |
| !!! | ACACTGTTAATTTTTTTGTG+AGG | + | chr4_2:38690113-38690132 | Msa0599350:CDS | 25.0% |
| ! | ACATTACTTACTTAACACTA+TGG | - | chr4_2:38690333-38690352 | None:intergenic | 25.0% |
| !!! | TAACTACATTTGGTTTTTGA+AGG | + | chr4_2:38690443-38690462 | Msa0599350:intron | 25.0% |
| !!! | AACTACATTTGGTTTTTGAA+GGG | + | chr4_2:38690444-38690463 | Msa0599350:intron | 25.0% |
| ! | AGTTAATAAGATAAGCCTTT+GGG | - | chr4_2:38690926-38690945 | None:intergenic | 25.0% |
| ! | ATTAGACATTTAAACTAGGT+TGG | + | chr4_2:38691053-38691072 | Msa0599350:intron | 25.0% |
| ! | CTGCCCAATATTATTTAAAA+AGG | + | chr4_2:38691106-38691125 | Msa0599350:intron | 25.0% |
| ! | ACCTAGGAAAAACAAAAATT+AGG | + | chr4_2:38691218-38691237 | Msa0599350:intron | 25.0% |
| !!! | TCCTAATTTTTGTTTTTCCT+AGG | - | chr4_2:38691222-38691241 | None:intergenic | 25.0% |
| ! | AAAAATTAGGAAGTCCAAAA+TGG | + | chr4_2:38691231-38691250 | Msa0599350:intron | 25.0% |
| !!! | GTTTATTGGGATGATTTTTT+TGG | - | chr4_2:38691260-38691279 | None:intergenic | 25.0% |
| ! | AAAAATCATCCCAATAAACA+AGG | + | chr4_2:38691261-38691280 | Msa0599350:intron | 25.0% |
| ! | AAAATCATCCCAATAAACAA+GGG | + | chr4_2:38691262-38691281 | Msa0599350:intron | 25.0% |
| !! | AAACATTACCCTTGTTTATT+GGG | - | chr4_2:38691273-38691292 | None:intergenic | 25.0% |
| ! | ATTCTATCATTAATGTGGAT+TGG | - | chr4_2:38691300-38691319 | None:intergenic | 25.0% |
| !! | CATATTTTTCGTGAAAGAAA+TGG | - | chr4_2:38691384-38691403 | None:intergenic | 25.0% |
| !! | ATTTTGCAAGGACAAAAAAT+TGG | - | chr4_2:38691752-38691771 | None:intergenic | 25.0% |
| !!! | TTTTTTCATTTATATTGGCG+TGG | + | chr4_2:38692038-38692057 | Msa0599350:intron | 25.0% |
| !!! | TGCAATATCTATTTTAGTGA+TGG | - | chr4_2:38692109-38692128 | None:intergenic | 25.0% |
| !!! | TAAGCATAGCACTTTTATTT+TGG | - | chr4_2:38692186-38692205 | None:intergenic | 25.0% |
| ! | TCTTTATGTGTTTATTCAGT+TGG | + | chr4_2:38692628-38692647 | Msa0599350:intron | 25.0% |
| ! | CTTTATGTGTTTATTCAGTT+GGG | + | chr4_2:38692629-38692648 | Msa0599350:intron | 25.0% |
| !! | TTTCGTAGAGTATTATACAA+AGG | + | chr4_2:38692738-38692757 | Msa0599350:CDS | 25.0% |
| !! | TTCGTAGAGTATTATACAAA+GGG | + | chr4_2:38692739-38692758 | Msa0599350:CDS | 25.0% |
| ! | AACAATATGGTAGTATTATG+TGG | + | chr4_2:38692973-38692992 | Msa0599350:CDS | 25.0% |
| !!! | ACTATGACAATGTTTTAGAT+TGG | + | chr4_2:38693197-38693216 | Msa0599350:CDS | 25.0% |
| !!! | CTATGACAATGTTTTAGATT+GGG | + | chr4_2:38693198-38693217 | Msa0599350:CDS | 25.0% |
| ! | GTTTAATTAAATACTTACCG+AGG | - | chr4_2:38693251-38693270 | None:intergenic | 25.0% |
| ! | ATACGTACTGTATAAATCTA+AGG | + | chr4_2:38693754-38693773 | Msa0599350:intron | 25.0% |
| ! | TACGTACTGTATAAATCTAA+GGG | + | chr4_2:38693755-38693774 | Msa0599350:intron | 25.0% |
| ! | AATTGACATTACATTAGACT+AGG | + | chr4_2:38693873-38693892 | Msa0599350:intron | 25.0% |
| ! | ATTGACATTACATTAGACTA+GGG | + | chr4_2:38693874-38693893 | Msa0599350:intron | 25.0% |
| ! | CAAGATAGTAAATGTAGAAA+TGG | - | chr4_2:38694265-38694284 | None:intergenic | 25.0% |
| ! | GTTCAAAAAGAAAGAGTTAT+TGG | + | chr4_2:38694357-38694376 | Msa0599350:CDS | 25.0% |
| ! | TATTTGTGGATAATCATCTT+CGG | - | chr4_2:38694543-38694562 | None:intergenic | 25.0% |
| ! | TGTGATCCAAACATTATAAT+TGG | - | chr4_2:38694579-38694598 | None:intergenic | 25.0% |
| AGAAACTCTTCTTTGGTTAA+AGG | - | chr4_2:38689663-38689682 | None:intergenic | 30.0% | |
| ! | AAAGCTACTTTGTTCTTTGA+GGG | - | chr4_2:38689720-38689739 | None:intergenic | 30.0% |
| AAAGTAGCTTTCCACTATAT+TGG | + | chr4_2:38689729-38689748 | Msa0599350:CDS | 30.0% | |
| GATTTACGATGAATTACTCT+AGG | - | chr4_2:38689807-38689826 | None:intergenic | 30.0% | |
| !! | TTTGTTGTTGCTATCATCAA+AGG | + | chr4_2:38689828-38689847 | Msa0599350:intron | 30.0% |
| ! | TTTTCCTATGTTATCTCTTG+AGG | + | chr4_2:38689922-38689941 | Msa0599350:CDS | 30.0% |
| ATATTTCAATGGAAGCTTTG+TGG | - | chr4_2:38689960-38689979 | None:intergenic | 30.0% | |
| ATGAAAGGAGGATATTTCAA+TGG | - | chr4_2:38689971-38689990 | None:intergenic | 30.0% | |
| !! | TTTTTCAGTGAAGCAATGAA+AGG | - | chr4_2:38689986-38690005 | None:intergenic | 30.0% |
| ACCATTGTTAATCCACTAAT+AGG | - | chr4_2:38690139-38690158 | None:intergenic | 30.0% | |
| TACTTTCCATATTTAGGTGT+CGG | + | chr4_2:38690366-38690385 | Msa0599350:intron | 30.0% | |
| !! | AAATAGTATATTGATGGCGA+TGG | + | chr4_2:38690409-38690428 | Msa0599350:intron | 30.0% |
| TTCATGGTACTAACTACATT+TGG | + | chr4_2:38690433-38690452 | Msa0599350:intron | 30.0% | |
| GCACTCTTTAACAACTTAAA+TGG | + | chr4_2:38690466-38690485 | Msa0599350:intron | 30.0% | |
| ! | ACTTAAATGGTACGTTTTGT+AGG | + | chr4_2:38690479-38690498 | Msa0599350:intron | 30.0% |
| !!! | TGATTTTGATTAGACAGATG+TGG | + | chr4_2:38690656-38690675 | Msa0599350:intron | 30.0% |
| GATTGTGTTGTAAGTTGTAA+TGG | + | chr4_2:38690681-38690700 | Msa0599350:intron | 30.0% | |
| CGATATTTAATACTCACACA+AGG | + | chr4_2:38690718-38690737 | Msa0599350:intron | 30.0% | |
| GAGTTAATAAGATAAGCCTT+TGG | - | chr4_2:38690927-38690946 | None:intergenic | 30.0% | |
| GAGGATTAGACATTTAAACT+AGG | + | chr4_2:38691049-38691068 | Msa0599350:intron | 30.0% | |
| AGGACAAAAAGGCAAAATAA+AGG | + | chr4_2:38691170-38691189 | Msa0599350:intron | 30.0% | |
| !!! | TTTTTGTTTTTCCTAGGTCT+TGG | - | chr4_2:38691216-38691235 | None:intergenic | 30.0% |
| !!! | GATTTTTTTGGAGACCATTT+TGG | - | chr4_2:38691248-38691267 | None:intergenic | 30.0% |
| ! | GAAACATTACCCTTGTTTAT+TGG | - | chr4_2:38691274-38691293 | None:intergenic | 30.0% |
| !! | TATCATTAATGTGGATTGGT+GGG | - | chr4_2:38691296-38691315 | None:intergenic | 30.0% |
| TGAGCATTCTATCATTAATG+TGG | - | chr4_2:38691305-38691324 | None:intergenic | 30.0% | |
| GCATAATTGTTTGCATATAG+GGG | - | chr4_2:38691424-38691443 | None:intergenic | 30.0% | |
| GGCATAATTGTTTGCATATA+GGG | - | chr4_2:38691425-38691444 | None:intergenic | 30.0% | |
| TGGCATAATTGTTTGCATAT+AGG | - | chr4_2:38691426-38691445 | None:intergenic | 30.0% | |
| AATCCAAAAGGAATGATAGA+AGG | + | chr4_2:38691456-38691475 | Msa0599350:intron | 30.0% | |
| ATCCAAAAGGAATGATAGAA+GGG | + | chr4_2:38691457-38691476 | Msa0599350:intron | 30.0% | |
| ! | AACATCATTGGTTACATCTT+TGG | - | chr4_2:38691528-38691547 | None:intergenic | 30.0% |
| !!! | ATCACATGGTACCTTTTTTA+GGG | - | chr4_2:38691599-38691618 | None:intergenic | 30.0% |
| !!! | TATCTATTTTAGTGATGGAG+AGG | - | chr4_2:38692104-38692123 | None:intergenic | 30.0% |
| ! | TCTATTGGTTGGATTCAATT+TGG | + | chr4_2:38692390-38692409 | Msa0599350:intron | 30.0% |
| GGATAATAAGTTTACTAGCT+AGG | + | chr4_2:38692411-38692430 | Msa0599350:intron | 30.0% | |
| ATTATATCTCAAGCAATGAC+TGG | - | chr4_2:38692604-38692623 | None:intergenic | 30.0% | |
| TCCTATATGAAACTTCCAAT+TGG | - | chr4_2:38692655-38692674 | None:intergenic | 30.0% | |
| ! | AAAATTCTTCTGATGGATCT+TGG | - | chr4_2:38692791-38692810 | None:intergenic | 30.0% |
| !! | TTTAAGACATTTTTCGATGC+TGG | + | chr4_2:38692813-38692832 | Msa0599350:CDS | 30.0% |
| ACATATATTCACTCTGTAGA+TGG | + | chr4_2:38692912-38692931 | Msa0599350:CDS | 30.0% | |
| TCGAACAATCAAATTCACTT+CGG | - | chr4_2:38693158-38693177 | None:intergenic | 30.0% | |
| AACATTGTCATAGTTTCCAA+CGG | - | chr4_2:38693191-38693210 | None:intergenic | 30.0% | |
| AAAATGTTAACAAGTGTCCT+TGG | + | chr4_2:38693335-38693354 | Msa0599350:intron | 30.0% | |
| AAATGTTAACAAGTGTCCTT+GGG | + | chr4_2:38693336-38693355 | Msa0599350:intron | 30.0% | |
| AAAGTTTAAATAGTCTCCCA+AGG | - | chr4_2:38693355-38693374 | None:intergenic | 30.0% | |
| !!! | ATGGAACCACTTGTTTTAAA+CGG | + | chr4_2:38693690-38693709 | Msa0599350:intron | 30.0% |
| !! | TTTTGACCGTTTAAAACAAG+TGG | - | chr4_2:38693699-38693718 | None:intergenic | 30.0% |
| !! | TGTTTTAAACGGTCAAAAAG+AGG | + | chr4_2:38693701-38693720 | Msa0599350:intron | 30.0% |
| TCAAACTTACTTAAAGTGCA+AGG | - | chr4_2:38694093-38694112 | None:intergenic | 30.0% | |
| ATCAGGTATACTGGAAATTA+AGG | + | chr4_2:38694154-38694173 | Msa0599350:CDS | 30.0% | |
| AAGCACAATGATGAGATTAA+GGG | + | chr4_2:38694188-38694207 | Msa0599350:CDS | 30.0% | |
| GAGATTAAGGGAGAATTATA+TGG | + | chr4_2:38694200-38694219 | Msa0599350:CDS | 30.0% | |
| GGGAGAATTATATGGTAAAT+TGG | + | chr4_2:38694208-38694227 | Msa0599350:CDS | 30.0% | |
| AGTAAATGTAGAAATGGTCA+TGG | - | chr4_2:38694259-38694278 | None:intergenic | 30.0% | |
| ! | TGTGATTTTTGCATCTGATT+CGG | - | chr4_2:38694408-38694427 | None:intergenic | 30.0% |
| TCAGATGCAAAAATCACAAT+TGG | + | chr4_2:38694410-38694429 | Msa0599350:CDS | 30.0% | |
| CAGATGCAAAAATCACAATT+GGG | + | chr4_2:38694411-38694430 | Msa0599350:CDS | 30.0% | |
| TAAACACAAATTCCCATGTT+GGG | + | chr4_2:38694681-38694700 | Msa0599350:three_prime_UTR | 30.0% | |
| GTTGTGTGAATTGAAAAAAG+TGG | + | chr4_2:38694714-38694733 | Msa0599350:three_prime_UTR | 30.0% | |
| AAAAACAAGTTTCATAGGGG+TGG | - | chr4_2:38689568-38689587 | None:intergenic | 35.0% | |
| TCTTTGGTTAAAGGATCAAG+TGG | - | chr4_2:38689654-38689673 | None:intergenic | 35.0% | |
| GACAGTTAGAAACTCTTCTT+TGG | - | chr4_2:38689670-38689689 | None:intergenic | 35.0% | |
| ! | GAAAGCTACTTTGTTCTTTG+AGG | - | chr4_2:38689721-38689740 | None:intergenic | 35.0% |
| TGTTCCTCAAGAGATAACAT+AGG | - | chr4_2:38689929-38689948 | None:intergenic | 35.0% | |
| ATGTTATCTCTTGAGGAACA+AGG | + | chr4_2:38689929-38689948 | Msa0599350:CDS | 35.0% | |
| ATTGCTTCACTGAAAAAGAG+AGG | + | chr4_2:38689989-38690008 | Msa0599350:CDS | 35.0% | |
| TTGGAGAAGAAGAGAGTAAA+AGG | + | chr4_2:38690059-38690078 | Msa0599350:CDS | 35.0% | |
| !!! | TTTTTTGTGAGGCCTATTAG+TGG | + | chr4_2:38690124-38690143 | Msa0599350:CDS | 35.0% |
| !! | GCCTATTAGTGGATTAACAA+TGG | + | chr4_2:38690135-38690154 | Msa0599350:CDS | 35.0% |
| TTAACAATGGTTGCTGATCT+TGG | + | chr4_2:38690148-38690167 | Msa0599350:CDS | 35.0% | |
| AGAAATTGAAGTTGTGCCTA+CGG | + | chr4_2:38690201-38690220 | Msa0599350:CDS | 35.0% | |
| ! | CACTTTAAGGACACTCTTTA+AGG | - | chr4_2:38690590-38690609 | None:intergenic | 35.0% |
| AAGATCTTTCGTAGCTTGAA+CGG | - | chr4_2:38690851-38690870 | None:intergenic | 35.0% | |
| ! | ATTAGCGAAGTTTGAAACTC+TGG | + | chr4_2:38690899-38690918 | Msa0599350:intron | 35.0% |
| GGCTTATCTTATTAACTCAC+TGG | + | chr4_2:38690929-38690948 | Msa0599350:intron | 35.0% | |
| ! | GAGGAAATTAAAGCATCAAG+AGG | + | chr4_2:38691027-38691046 | Msa0599350:intron | 35.0% |
| ! | GAAATTAAAGCATCAAGAGG+AGG | + | chr4_2:38691030-38691049 | Msa0599350:intron | 35.0% |
| TAATATTGGGCAGACAGTAA+AGG | - | chr4_2:38691099-38691118 | None:intergenic | 35.0% | |
| AGGGAGAAAATAGTTAGAAG+AGG | + | chr4_2:38691126-38691145 | Msa0599350:intron | 35.0% | |
| GGGAGAAAATAGTTAGAAGA+GGG | + | chr4_2:38691127-38691146 | Msa0599350:intron | 35.0% | |
| GGAGAAAATAGTTAGAAGAG+GGG | + | chr4_2:38691128-38691147 | Msa0599350:intron | 35.0% | |
| AAACATAACAACCAAGACCT+AGG | + | chr4_2:38691202-38691221 | Msa0599350:intron | 35.0% | |
| !! | CTATCATTAATGTGGATTGG+TGG | - | chr4_2:38691297-38691316 | None:intergenic | 35.0% |
| ! | CTATCATTCCTTTTGGATTG+AGG | - | chr4_2:38691455-38691474 | None:intergenic | 35.0% |
| ! | AACCCTTCTATCATTCCTTT+TGG | - | chr4_2:38691462-38691481 | None:intergenic | 35.0% |
| TGGTTACATCTTTGGATAGA+AGG | - | chr4_2:38691520-38691539 | None:intergenic | 35.0% | |
| AAGCAGAGTTACAACATCAT+TGG | - | chr4_2:38691540-38691559 | None:intergenic | 35.0% | |
| !!! | GATCACATGGTACCTTTTTT+AGG | - | chr4_2:38691600-38691619 | None:intergenic | 35.0% |
| CCATTAATATAGGGATCACA+TGG | - | chr4_2:38691613-38691632 | None:intergenic | 35.0% | |
| CCATGTGATCCCTATATTAA+TGG | + | chr4_2:38691610-38691629 | Msa0599350:intron | 35.0% | |
| TATGCACTACATAAAGACCA+AGG | + | chr4_2:38691831-38691850 | Msa0599350:intron | 35.0% | |
| ATGCACTACATAAAGACCAA+GGG | + | chr4_2:38691832-38691851 | Msa0599350:intron | 35.0% | |
| !!! | TATTTTTAAGGCAGTACCCT+TGG | - | chr4_2:38691851-38691870 | None:intergenic | 35.0% |
| GCCAATTGGAAGTTTCATAT+AGG | + | chr4_2:38692651-38692670 | Msa0599350:CDS | 35.0% | |
| GTTAGGTATCAAAGAAACAG+TGG | - | chr4_2:38692859-38692878 | None:intergenic | 35.0% | |
| TAATTATTAACCCACGCGAA+TGG | - | chr4_2:38693568-38693587 | None:intergenic | 35.0% | |
| AGAATAGTGTCCAACTAAGT+TGG | - | chr4_2:38693902-38693921 | None:intergenic | 35.0% | |
| TCTATACAGATAGCACTATC+AGG | + | chr4_2:38694137-38694156 | Msa0599350:intron | 35.0% | |
| CAAGCACAATGATGAGATTA+AGG | + | chr4_2:38694187-38694206 | Msa0599350:CDS | 35.0% | |
| AAAACCGTAAGAATCACAGA+TGG | + | chr4_2:38694332-38694351 | Msa0599350:CDS | 35.0% | |
| ACTTCCATCTGTGATTCTTA+CGG | - | chr4_2:38694339-38694358 | None:intergenic | 35.0% | |
| TCGAACAAAAAAAATGCGGT+TGG | + | chr4_2:38694464-38694483 | Msa0599350:CDS | 35.0% | |
| TAGGAATTGCTGGAATCAAA+CGG | - | chr4_2:38694505-38694524 | None:intergenic | 35.0% | |
| GATGATTATCCACAAATACG+CGG | + | chr4_2:38694545-38694564 | Msa0599350:CDS | 35.0% | |
| AATAGAACTGAAAAATGGGC+TGG | + | chr4_2:38694605-38694624 | Msa0599350:CDS | 35.0% | |
| GACTCTATGTTGATCATTGT+TGG | + | chr4_2:38694630-38694649 | Msa0599350:CDS | 35.0% | |
| CTAAACACAAATTCCCATGT+TGG | + | chr4_2:38694680-38694699 | Msa0599350:three_prime_UTR | 35.0% | |
| AAGTGGATGTTGATGCAATG+GGG | - | chr4_2:38689637-38689656 | None:intergenic | 40.0% | |
| CAAGTGGATGTTGATGCAAT+GGG | - | chr4_2:38689638-38689657 | None:intergenic | 40.0% | |
| TCAAGTGGATGTTGATGCAA+TGG | - | chr4_2:38689639-38689658 | None:intergenic | 40.0% | |
| TTGTCTCTGACATGTTCACA+AGG | + | chr4_2:38689892-38689911 | Msa0599350:intron | 40.0% | |
| TGTCTCTGACATGTTCACAA+GGG | + | chr4_2:38689893-38689912 | Msa0599350:intron | 40.0% | |
| TGACATGTTCACAAGGGATA+TGG | + | chr4_2:38689899-38689918 | Msa0599350:intron | 40.0% | |
| TTCAGTGAAGCAATGAAAGG+AGG | - | chr4_2:38689983-38690002 | None:intergenic | 40.0% | |
| GGCTGAGAACACTGAATATA+AGG | + | chr4_2:38690222-38690241 | Msa0599350:CDS | 40.0% | |
| TCAAAACAAAGCCCACCATT+TGG | + | chr4_2:38690247-38690266 | Msa0599350:CDS | 40.0% | |
| !!! | CTATGCTGTTTTGGTCCAAA+TGG | - | chr4_2:38690265-38690284 | None:intergenic | 40.0% |
| !! | CTTGCAAGACTATGCTGTTT+TGG | - | chr4_2:38690274-38690293 | None:intergenic | 40.0% |
| AGGAAACCGACACCTAAATA+TGG | - | chr4_2:38690375-38690394 | None:intergenic | 40.0% | |
| !! | TATTGATGGCGATGGATTCA+TGG | + | chr4_2:38690417-38690436 | Msa0599350:intron | 40.0% |
| AGATCTTTCGTAGCTTGAAC+GGG | - | chr4_2:38690850-38690869 | None:intergenic | 40.0% | |
| ! | TTTTAGATGAACCAAGAGCG+AGG | + | chr4_2:38691008-38691027 | Msa0599350:intron | 40.0% |
| ! | TGCTTTAATTTCCTCGCTCT+TGG | - | chr4_2:38691022-38691041 | None:intergenic | 40.0% |
| ! | TTGTCCTGAGAGTTTAGGTT+TGG | - | chr4_2:38691157-38691176 | None:intergenic | 40.0% |
| ! | CCTTTTTGTCCTGAGAGTTT+AGG | - | chr4_2:38691162-38691181 | None:intergenic | 40.0% |
| CCTAAACTCTCAGGACAAAA+AGG | + | chr4_2:38691159-38691178 | Msa0599350:intron | 40.0% | |
| CGTGAAAGAAATGGTTGCAT+GGG | - | chr4_2:38691375-38691394 | None:intergenic | 40.0% | |
| TCGTGAAAGAAATGGTTGCA+TGG | - | chr4_2:38691376-38691395 | None:intergenic | 40.0% | |
| ! | CTTTTGGATTGAGGAACTGT+TGG | - | chr4_2:38691446-38691465 | None:intergenic | 40.0% |
| CAACAGTTCCTCAATCCAAA+AGG | + | chr4_2:38691444-38691463 | Msa0599350:intron | 40.0% | |
| !!! | CATGCGTGATTTTGGCTTTT+AGG | - | chr4_2:38691485-38691504 | None:intergenic | 40.0% |
| CATCTTTGGATAGAAGGAGT+CGG | - | chr4_2:38691514-38691533 | None:intergenic | 40.0% | |
| !! | TGTAACTCTGCTTCTAAGAC+TGG | + | chr4_2:38691547-38691566 | Msa0599350:intron | 40.0% |
| !! | GTAACTCTGCTTCTAAGACT+GGG | + | chr4_2:38691548-38691567 | Msa0599350:intron | 40.0% |
| GTTTATTCAGTTGGGCCAAT+TGG | + | chr4_2:38692637-38692656 | Msa0599350:intron | 40.0% | |
| ATAGGATTTGATGTACGAGC+TGG | + | chr4_2:38692669-38692688 | Msa0599350:CDS | 40.0% | |
| ! | TCTTCTGATGGATCTTGGTA+TGG | - | chr4_2:38692786-38692805 | None:intergenic | 40.0% |
| !! | TTTTTCGATGCTGGAGAGTA+TGG | + | chr4_2:38692822-38692841 | Msa0599350:CDS | 40.0% |
| GTATCAATGAAATGAGCGTG+TGG | - | chr4_2:38692894-38692913 | None:intergenic | 40.0% | |
| CACAAATCGCATTCTTCAAG+AGG | - | chr4_2:38692947-38692966 | None:intergenic | 40.0% | |
| ATAGTTTCCAACGGTGACTA+TGG | - | chr4_2:38693182-38693201 | None:intergenic | 40.0% | |
| GATTGGGAGTTCAAAACAAG+TGG | + | chr4_2:38693214-38693233 | Msa0599350:CDS | 40.0% | |
| TTCACAAAAAGAGGGCTTGA+TGG | + | chr4_2:38693671-38693690 | Msa0599350:intron | 40.0% | |
| TGTCCTTAGGACACAAGTTA+AGG | - | chr4_2:38694030-38694049 | None:intergenic | 40.0% | |
| ! | TCATGCTAACTTGTGTCCTT+AGG | - | chr4_2:38694043-38694062 | None:intergenic | 40.0% |
| AGGACACAAGTTAGCATGAT+CGG | + | chr4_2:38694044-38694063 | Msa0599350:intron | 40.0% | |
| GATAGCACTATCAGGTATAC+TGG | + | chr4_2:38694145-38694164 | Msa0599350:intron | 40.0% | |
| TTGGTATCAGCAAACAGCAT+TGG | + | chr4_2:38694227-38694246 | Msa0599350:CDS | 40.0% | |
| ! | TTAATCACGACTAGTTCAGC+CGG | - | chr4_2:38694443-38694462 | None:intergenic | 40.0% |
| AATGCGGTTGGAAACCATAT+CGG | + | chr4_2:38694476-38694495 | Msa0599350:CDS | 40.0% | |
| GAATCAAACGGTATCCGATA+TGG | - | chr4_2:38694493-38694512 | None:intergenic | 40.0% | |
| AGTGAATGAGTAGGAATTGC+TGG | - | chr4_2:38694515-38694534 | None:intergenic | 40.0% | |
| TCGGTTAGAAGTGAATGAGT+AGG | - | chr4_2:38694524-38694543 | None:intergenic | 40.0% | |
| GATCATTGTTGGAACATGTG+TGG | + | chr4_2:38694641-38694660 | Msa0599350:CDS | 40.0% | |
| !! | ACACTAGTTCTACCCAACAT+GGG | - | chr4_2:38694696-38694715 | None:intergenic | 40.0% |
| !! | AACACTAGTTCTACCCAACA+TGG | - | chr4_2:38694697-38694716 | None:intergenic | 40.0% |
| AAAAAGTGGAAGTCCCACAT+CGG | + | chr4_2:38694728-38694747 | Msa0599350:three_prime_UTR | 40.0% | |
| GGTCATCTAGGCCAATATAG+TGG | - | chr4_2:38689743-38689762 | None:intergenic | 45.0% | |
| AATCTTTGTCGGGGTCATCT+AGG | - | chr4_2:38689755-38689774 | None:intergenic | 45.0% | |
| TTCTTCTCCAAACCATCCCA+TGG | - | chr4_2:38690050-38690069 | None:intergenic | 45.0% | |
| TATTCAGTGTTCTCAGCCGT+AGG | - | chr4_2:38690220-38690239 | None:intergenic | 45.0% | |
| !!! | GCTGTTTTGGTCCAAATGGT+GGG | - | chr4_2:38690261-38690280 | None:intergenic | 45.0% |
| !!! | TGCTGTTTTGGTCCAAATGG+TGG | - | chr4_2:38690262-38690281 | None:intergenic | 45.0% |
| CTTGCAAGTCATCAACCTCA+TGG | + | chr4_2:38690286-38690305 | Msa0599350:CDS | 45.0% | |
| ! | GTTTGAAACTCTGGTCCCAA+AGG | + | chr4_2:38690908-38690927 | Msa0599350:intron | 45.0% |
| ATTGGGCAGACAGTAAAGGA+TGG | - | chr4_2:38691095-38691114 | None:intergenic | 45.0% | |
| GAGACCAAACCTAAACTCTC+AGG | + | chr4_2:38691150-38691169 | Msa0599350:intron | 45.0% | |
| ! | GGACTCAACATGCGTGATTT+TGG | - | chr4_2:38691493-38691512 | None:intergenic | 45.0% |
| GGGTGTGTTGCAGGTAATTT+GGG | - | chr4_2:38691579-38691598 | None:intergenic | 45.0% | |
| AGGGTGTGTTGCAGGTAATT+TGG | - | chr4_2:38691580-38691599 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTAGGGTGTGTTGC+AGG | - | chr4_2:38691588-38691607 | None:intergenic | 45.0% |
| CCTGCAACACACCCTAAAAA+AGG | + | chr4_2:38691585-38691604 | Msa0599350:intron | 45.0% | |
| ! | AGTGATGGAGAGGAATGCTT+GGG | - | chr4_2:38692094-38692113 | None:intergenic | 45.0% |
| ! | TAGTGATGGAGAGGAATGCT+TGG | - | chr4_2:38692095-38692114 | None:intergenic | 45.0% |
| TCAATGAAATGAGCGTGTGG+TGG | - | chr4_2:38692891-38692910 | None:intergenic | 45.0% | |
| AATACTTACCGAGGGCTTGA+TGG | - | chr4_2:38693242-38693261 | None:intergenic | 45.0% | |
| GACTAGGGTTCCAACTTAGT+TGG | + | chr4_2:38693889-38693908 | Msa0599350:intron | 45.0% | |
| !! | GCTCCTTAACTTGTGTCCTA+AGG | + | chr4_2:38694024-38694043 | Msa0599350:intron | 45.0% |
| AAGTGCAAGGACATGCAAGT+GGG | - | chr4_2:38694080-38694099 | None:intergenic | 45.0% | |
| AAAGTGCAAGGACATGCAAG+TGG | - | chr4_2:38694081-38694100 | None:intergenic | 45.0% | |
| ! | TAATCACGACTAGTTCAGCC+GGG | - | chr4_2:38694442-38694461 | None:intergenic | 45.0% |
| GTAAATGCACCGCGTATTTG+TGG | - | chr4_2:38694557-38694576 | None:intergenic | 45.0% | |
| !! | AGAACTGAAAAATGGGCTGG+TGG | + | chr4_2:38694608-38694627 | Msa0599350:CDS | 45.0% |
| !!! | ATATTTTAAAGTTAAAAATA+AGG | - | chr4_2:38690614-38690633 | None:intergenic | 5.0% |
| !! | AAAATTATATTTAAATCTAA+GGG | - | chr4_2:38691664-38691683 | None:intergenic | 5.0% |
| !! | AAAAATTATATTTAAATCTA+AGG | - | chr4_2:38691665-38691684 | None:intergenic | 5.0% |
| !! | AAAATTTATTCATATAAAAT+TGG | + | chr4_2:38691767-38691786 | Msa0599350:intron | 5.0% |
| !!! | ACTTTTAAATATATATAAAT+AGG | - | chr4_2:38692254-38692273 | None:intergenic | 5.0% |
| !! | ATTAATTATTAAATTAAGTT+TGG | - | chr4_2:38693051-38693070 | None:intergenic | 5.0% |
| ACTCCTCTACTTCCAAGCAG+TGG | + | chr4_2:38689602-38689621 | Msa0599350:CDS | 50.0% | |
| AGACCACTGCTTGGAAGTAG+AGG | - | chr4_2:38689608-38689627 | None:intergenic | 50.0% | |
| AGTGTGTGCTCCATTCTCCA+TGG | + | chr4_2:38690030-38690049 | Msa0599350:CDS | 50.0% | |
| GTGTGTGCTCCATTCTCCAT+GGG | + | chr4_2:38690031-38690050 | Msa0599350:CDS | 50.0% | |
| CCAAACCATCCCATGGAGAA+TGG | - | chr4_2:38690043-38690062 | None:intergenic | 50.0% | |
| CCATTCTCCATGGGATGGTT+TGG | + | chr4_2:38690040-38690059 | Msa0599350:CDS | 50.0% | |
| GGTTGCTGATCTTGGACTCA+TGG | + | chr4_2:38690156-38690175 | Msa0599350:CDS | 50.0% | |
| AGTCATCAACCTCATGGTCC+TGG | + | chr4_2:38690292-38690311 | Msa0599350:CDS | 50.0% | |
| ATCAAGAAGCCAGGACCATG+AGG | - | chr4_2:38690304-38690323 | None:intergenic | 50.0% | |
| GGTCCTGGCTTCTTGATCAA+TGG | + | chr4_2:38690307-38690326 | Msa0599350:CDS | 50.0% | |
| TGGCCATTGATCAAGAAGCC+AGG | - | chr4_2:38690313-38690332 | None:intergenic | 50.0% | |
| ! | TAAAGGATGGAGGCTGGTTG+GGG | - | chr4_2:38691082-38691101 | None:intergenic | 50.0% |
| ! | GTAAAGGATGGAGGCTGGTT+GGG | - | chr4_2:38691083-38691102 | None:intergenic | 50.0% |
| AGTAAAGGATGGAGGCTGGT+TGG | - | chr4_2:38691084-38691103 | None:intergenic | 50.0% | |
| AGACAGTAAAGGATGGAGGC+TGG | - | chr4_2:38691088-38691107 | None:intergenic | 50.0% | |
| !! | CTCTGCTTCTAAGACTGGGA+AGG | + | chr4_2:38691552-38691571 | Msa0599350:intron | 50.0% |
| !! | TGTGGTGGACAATCACGGTT+AGG | - | chr4_2:38692876-38692895 | None:intergenic | 50.0% |
| ATCGCATTCTTCAAGAGGCG+TGG | - | chr4_2:38692942-38692961 | None:intergenic | 50.0% | |
| GTTCGAACCATAGTCACCGT+TGG | + | chr4_2:38693172-38693191 | Msa0599350:CDS | 50.0% | |
| AAGTGGTTCCATCAAGCCCT+CGG | + | chr4_2:38693231-38693250 | Msa0599350:CDS | 50.0% | |
| TAAAGCCTACACCATTCGCG+TGG | + | chr4_2:38693554-38693573 | Msa0599350:intron | 50.0% | |
| AAAGCCTACACCATTCGCGT+GGG | + | chr4_2:38693555-38693574 | Msa0599350:intron | 50.0% | |
| TTAACCCACGCGAATGGTGT+AGG | - | chr4_2:38693562-38693581 | None:intergenic | 50.0% | |
| CGTATGTAACGACACGACAG+AGG | - | chr4_2:38693739-38693758 | None:intergenic | 50.0% | |
| AATCACAATTGGGTCTGCCC+CGG | + | chr4_2:38694421-38694440 | Msa0599350:CDS | 50.0% | |
| ! | AATCACGACTAGTTCAGCCG+GGG | - | chr4_2:38694441-38694460 | None:intergenic | 50.0% |
| GGGTTACAGAGACCACTGCT+TGG | - | chr4_2:38689617-38689636 | None:intergenic | 55.0% | |
| GTGCTCCATTCTCCATGGGA+TGG | + | chr4_2:38690035-38690054 | Msa0599350:CDS | 55.0% | |
| GGGCAGACAGTAAAGGATGG+AGG | - | chr4_2:38691092-38691111 | None:intergenic | 55.0% | |
| !! | GAGCGTGTGGTGGACAATCA+CGG | - | chr4_2:38692881-38692900 | None:intergenic | 55.0% |
| AGTGGAAGTCCCACATCGGA+TGG | + | chr4_2:38694732-38694751 | Msa0599350:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 38689555 | 38694760 | 38689555 | ID=Msa0599350;Name=Msa0599350 |
| chr4_2 | mRNA | 38689555 | 38694760 | 38689555 | ID=Msa0599350-mRNA-1;Parent=Msa0599350;Name=Msa0599350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.6|1|1|1|5|90|567 |
| chr4_2 | exon | 38689555 | 38689809 | 38689555 | ID=Msa0599350-mRNA-1:exon:8517;Parent=Msa0599350-mRNA-1 |
| chr4_2 | exon | 38689914 | 38690341 | 38689914 | ID=Msa0599350-mRNA-1:exon:8518;Parent=Msa0599350-mRNA-1 |
| chr4_2 | exon | 38692647 | 38693028 | 38692647 | ID=Msa0599350-mRNA-1:exon:8519;Parent=Msa0599350-mRNA-1 |
| chr4_2 | exon | 38693139 | 38693252 | 38693139 | ID=Msa0599350-mRNA-1:exon:8520;Parent=Msa0599350-mRNA-1 |
| chr4_2 | exon | 38694146 | 38694760 | 38694146 | ID=Msa0599350-mRNA-1:exon:8521;Parent=Msa0599350-mRNA-1 |
| chr4_2 | CDS | 38689555 | 38689809 | 38689555 | ID=Msa0599350-mRNA-1:cds;Parent=Msa0599350-mRNA-1 |
| chr4_2 | CDS | 38689914 | 38690341 | 38689914 | ID=Msa0599350-mRNA-1:cds;Parent=Msa0599350-mRNA-1 |
| chr4_2 | CDS | 38692647 | 38693028 | 38692647 | ID=Msa0599350-mRNA-1:cds;Parent=Msa0599350-mRNA-1 |
| chr4_2 | CDS | 38693139 | 38693252 | 38693139 | ID=Msa0599350-mRNA-1:cds;Parent=Msa0599350-mRNA-1 |
| chr4_2 | CDS | 38694146 | 38694670 | 38694146 | ID=Msa0599350-mRNA-1:cds;Parent=Msa0599350-mRNA-1 |
| chr4_2 | three_prime_UTR | 38694671 | 38694760 | 38694671 | ID=Msa0599350-mRNA-1:three_prime_utr;Parent=Msa0599350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
