AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1229880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1229880 MtrunA17_Chr8g0337611 98.438 384 6 0 1 384 49 432 0.0 786
Msa1229880 MtrunA17_Chr4g0003121 35.955 267 160 8 113 372 113 375 4.23e-43 154
Msa1229880 MtrunA17_Chr2g0324141 24.161 298 171 10 129 384 28 312 5.38e-16 78.2
Msa1229880 MtrunA17_Chr5g0423381 21.678 286 176 8 125 382 74 339 6.67e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1229880 AT4G12830.1 69.744 390 104 3 5 382 2 389 0.0 564
Msa1229880 AT1G52510.1 35.556 270 157 9 113 372 110 372 1.18e-41 150
Msa1229880 AT1G52510.2 36.199 221 127 7 159 372 15 228 9.39e-32 120
Msa1229880 AT5G19850.1 22.917 288 180 8 120 382 88 358 7.21e-15 75.9

Find 109 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATATTGCATTTAAAATT+AGG 0.149079 8_2:-5836078 Msa1229880:three_prime_UTR
GAACTTGGACAACTTATTTA+TGG 0.150873 8_2:-5836266 Msa1229880:CDS
GACATTTCCCTATCCAAATT+TGG 0.151833 8_2:+5836037 None:intergenic
CAGATATTCAAATCCAAATT+TGG 0.181049 8_2:-5836050 Msa1229880:three_prime_UTR
AAGCTACCGGCGATCGTTTC+AGG 0.185171 8_2:-5839817 Msa1229880:intron
GATAAGCCTCAACCTAAATA+TGG 0.204931 8_2:-5838980 Msa1229880:CDS
CACCTTTAGGTCTTTCTTCA+TGG 0.215656 8_2:+5838008 None:intergenic
TAGGTCTTTCTTCATGGTTC+TGG 0.240612 8_2:+5838014 None:intergenic
GCTTTGTCACTGGCCCTTAA+TGG 0.256586 8_2:+5838141 None:intergenic
TTGGAACTTCAATAAGCTTA+TGG 0.259244 8_2:+5837696 None:intergenic
AATCTTCTCCTGGTGTTTGC+TGG 0.286979 8_2:+5838605 None:intergenic
GTGTAGTCAAACCCATATTT+AGG 0.295962 8_2:+5838968 None:intergenic
GTTAAAGCTTATTCAATTCC+TGG 0.300530 8_2:-5839896 Msa1229880:CDS
CCACAAAGCGTTTCCTTTCA+AGG 0.305182 8_2:-5840720 Msa1229880:CDS
AAACCATCACCAACAGAAAT+AGG 0.308975 8_2:+5840563 None:intergenic
TTCTTATCGCAAAGTTCTTC+CGG 0.338122 8_2:-5839399 Msa1229880:CDS
CTGGCATACTTAACTACAAC+TGG 0.368426 8_2:+5838624 None:intergenic
GGGTTTGACTACACCCTTGA+TGG 0.373118 8_2:-5838959 Msa1229880:intron
TGTTCGAACCACCGTATGTT+GGG 0.374180 8_2:-5837777 Msa1229880:CDS
AGAAGACCCTATCTCATATC+TGG 0.388030 8_2:-5838066 Msa1229880:CDS
GCTTATTCAATTCCTGGAAC+TGG 0.388136 8_2:-5839890 Msa1229880:CDS
TGAGTGTTTAGGATCCATTA+AGG 0.388171 8_2:-5838155 Msa1229880:intron
GAAAGAAGTGGTAGTTTGTT+TGG 0.395699 8_2:+5840812 None:intergenic
AGACAATGTAGGTGGAAGTT+TGG 0.397564 8_2:+5838293 None:intergenic
CTGAACTGTAGTACTTCAAA+TGG 0.399768 8_2:-5840685 Msa1229880:CDS
TGGTAGTTTGTTTGGTTGGT+TGG 0.402147 8_2:+5840820 None:intergenic
TGAGGAGCCAGATATGAGAT+AGG 0.403625 8_2:+5838059 None:intergenic
ATGGTTTAAGCAAGGGAAAA+TGG 0.404912 8_2:-5840380 Msa1229880:intron
ACAACATAAACAAATATGTT+TGG 0.406958 8_2:+5836116 None:intergenic
GCTTGTCAGTGCTTTGTCAC+TGG 0.410366 8_2:+5838131 None:intergenic
CTGGATGCTCCTATTTCTGT+TGG 0.413992 8_2:-5840572 Msa1229880:CDS
TGCTTAAACCATTCATCACT+TGG 0.420796 8_2:+5840391 None:intergenic
CCTTGAAAGGAAACGCTTTG+TGG 0.424241 8_2:+5840720 None:intergenic
AGGTGGAAGTTTGGCATGTT+GGG 0.427743 8_2:+5838302 None:intergenic
TTGCACAACAAGTGAGACTT+TGG 0.432432 8_2:+5838747 None:intergenic
GAAGTGGTAGTTTGTTTGGT+TGG 0.434708 8_2:+5840816 None:intergenic
TATCTCATATCTGGCTCCTC+AGG 0.436139 8_2:-5838057 Msa1229880:CDS
AATCCATGGTTTCCCTTCAC+AGG 0.438753 8_2:-5839505 Msa1229880:intron
TGTTACGGCGCGATAGTCCT+TGG 0.439215 8_2:+5839370 None:intergenic
GCTTCAGAGTCTTCCTTGAA+AGG 0.446245 8_2:+5840707 None:intergenic
ATCGCGCCGTAACATTTGAT+TGG 0.446745 8_2:-5839361 Msa1229880:CDS
GCTCCTATTTCTGTTGGTGA+TGG 0.453847 8_2:-5840566 Msa1229880:CDS
AACCATTCATCACTTGGATT+AGG 0.456785 8_2:+5840397 None:intergenic
AACTTCAATAAGCTTATGGT+TGG 0.461173 8_2:+5837700 None:intergenic
GCTGCAGGATGATTATCTTC+TGG 0.462577 8_2:-5840591 Msa1229880:intron
ATTCAAATCCAAATTTGGAT+AGG 0.466262 8_2:-5836045 Msa1229880:three_prime_UTR
TTAAGTTGTTAATCTTCTCC+TGG 0.467916 8_2:+5838595 None:intergenic
GAAGATTGCGGCGAAGAACT+TGG 0.471562 8_2:-5836281 Msa1229880:CDS
ATTGTGTTTGAATATATACT+TGG 0.474533 8_2:+5836144 None:intergenic
GAGTGTTTAGGATCCATTAA+GGG 0.475394 8_2:-5838154 Msa1229880:intron
TCAAACCCATATTTAGGTTG+AGG 0.477709 8_2:+5838974 None:intergenic
TTCAAATCCAAATTTGGATA+GGG 0.488406 8_2:-5836044 Msa1229880:three_prime_UTR
AGAACCATGAAAAGCTTGAA+TGG 0.488443 8_2:+5840780 None:intergenic
ATAAGCCTCAACCTAAATAT+GGG 0.489599 8_2:-5838979 Msa1229880:CDS
GGTTGGTTGGAGAGTGAAGA+GGG 0.490676 8_2:+5840833 None:intergenic
ATCTCTCTGGCCCCAACATA+CGG 0.494352 8_2:+5837766 None:intergenic
CAATACTAAAGGACAAAAGT+TGG 0.502637 8_2:-5837802 Msa1229880:CDS
ATATTTCCTTCAGAGGTATG+TGG 0.509867 8_2:-5837837 Msa1229880:intron
CAAATGAAACTCACCTGTGA+AGG 0.512957 8_2:+5839492 None:intergenic
AGCTCAACCAGCGATCTCTC+TGG 0.519566 8_2:+5837753 None:intergenic
ACCTAGCCAATCAAATGTTA+CGG 0.522106 8_2:+5839355 None:intergenic
TAAACAGGAAAATATTCAGA+TGG 0.522423 8_2:-5840421 Msa1229880:intron
AAGAAGATTGAAGGTGGGAA+TGG 0.524368 8_2:+5840743 None:intergenic
CACACAAGCAATTACCATCA+AGG 0.528864 8_2:+5838945 None:intergenic
AACCATGAAGAAAGACCTAA+AGG 0.534883 8_2:-5838010 Msa1229880:intron
GGCCTAATCCAAGTGATGAA+TGG 0.538010 8_2:-5840399 Msa1229880:CDS
GTGATGAATGGTTTAAGCAA+GGG 0.543761 8_2:-5840387 Msa1229880:CDS
TAGGTGGAAGTTTGGCATGT+TGG 0.548269 8_2:+5838301 None:intergenic
GGATATGCAAACAATACTAA+AGG 0.550936 8_2:-5837813 Msa1229880:CDS
CCTTCAGTGATATTAATCCA+TGG 0.554816 8_2:-5839519 Msa1229880:CDS
AATATATACTTGGCCTACAC+AGG 0.555459 8_2:+5836154 None:intergenic
GGTGATGGTTTCTCTTTCAG+TGG 0.555932 8_2:-5840551 Msa1229880:CDS
GCTTTGTGGAAGAAGATTGA+AGG 0.557911 8_2:+5840734 None:intergenic
ATATTCAGCAACTTTCTGCT+AGG 0.558095 8_2:-5838270 Msa1229880:CDS
CGATAGTCCTTGGAGAGTAC+CGG 0.562349 8_2:+5839380 None:intergenic
ATGTTCGAACCACCGTATGT+TGG 0.565122 8_2:-5837778 Msa1229880:CDS
AAACAGGAAAATATTCAGAT+GGG 0.565601 8_2:-5840420 Msa1229880:intron
GATGGTTTCTCTTTCAGTGG+AGG 0.567845 8_2:-5840548 Msa1229880:intron
TAAGTATGCCAGCAAACACC+AGG 0.570359 8_2:-5838613 Msa1229880:CDS
TAAGCTTATTGAAGTTCCAA+AGG 0.573364 8_2:-5837693 Msa1229880:intron
TGTGGAAGAAGATTGAAGGT+GGG 0.573712 8_2:+5840738 None:intergenic
CCATGGATTAATATCACTGA+AGG 0.576210 8_2:+5839519 None:intergenic
GGAGTGGAAGATTTCTGCAA+AGG 0.578345 8_2:-5837725 Msa1229880:CDS
AGTTCTTCCGGTACTCTCCA+AGG 0.579849 8_2:-5839387 Msa1229880:CDS
AATGAAAGAAGAAGATGCAA+TGG 0.582732 8_2:-5838094 Msa1229880:CDS
GACAAAGCACTGACAAGCTG+TGG 0.588914 8_2:-5838126 Msa1229880:CDS
CTGGTTGAGCTACGATGGAG+TGG 0.595244 8_2:-5837741 Msa1229880:CDS
AGTGATGAATGGTTTAAGCA+AGG 0.595928 8_2:-5840388 Msa1229880:CDS
AAATGAAACTCACCTGTGAA+GGG 0.596087 8_2:+5839493 None:intergenic
TTGTGGAAGAAGATTGAAGG+TGG 0.598706 8_2:+5840737 None:intergenic
TTAGGCTGGACATCATGCAC+AGG 0.598886 8_2:-5836303 Msa1229880:intron
ATCTGAAATTTAACCTGTGT+AGG 0.599125 8_2:-5836167 Msa1229880:three_prime_UTR
GGTACTAGCTCTCAAGCTAC+CGG 0.606037 8_2:-5839830 Msa1229880:CDS
GATCGCTGGTTGAGCTACGA+TGG 0.607809 8_2:-5837746 Msa1229880:CDS
GAGGAGCCAGATATGAGATA+GGG 0.609039 8_2:+5838060 None:intergenic
TTGCTGAATATAGACAATGT+AGG 0.611532 8_2:+5838282 None:intergenic
GTTCGAACCACCGTATGTTG+GGG 0.616165 8_2:-5837776 Msa1229880:CDS
CTGAATATAGACAATGTAGG+TGG 0.618276 8_2:+5838285 None:intergenic
ACACAAGCAATTACCATCAA+GGG 0.620118 8_2:+5838946 None:intergenic
GCCGTAACATTTGATTGGCT+AGG 0.627082 8_2:-5839356 Msa1229880:intron
TCACCTGTGAAGGGAAACCA+TGG 0.629688 8_2:+5839502 None:intergenic
GTTGGGGCCAGAGAGATCGC+TGG 0.642573 8_2:-5837760 Msa1229880:CDS
CATCATGCACAGGAAGATTG+CGG 0.645709 8_2:-5836293 Msa1229880:CDS
TTTCCTTCAGAGGTATGTGG+AGG 0.652255 8_2:-5837834 Msa1229880:intron
TAATTACCTGAAACGATCGC+CGG 0.653802 8_2:+5839811 None:intergenic
TGCATTCAATGCAAAGCCTG+AGG 0.657773 8_2:+5838041 None:intergenic
TGGTTGGTTGGAGAGTGAAG+AGG 0.671538 8_2:+5840832 None:intergenic
TGGTCATTGCATGAAAGAAG+TGG 0.676371 8_2:+5840800 None:intergenic
TCTCTGGCCCCAACATACGG+TGG 0.693967 8_2:+5837769 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAAAAATTGAGTTAA+AGG - chr8_2:5839688-5839707 Msa1229880:intron 10.0%
!! ATGAAGTTCAAATAATAAAA+GGG + chr8_2:5836915-5836934 None:intergenic 15.0%
!! AATGAAGTTCAAATAATAAA+AGG + chr8_2:5836916-5836935 None:intergenic 15.0%
!! AATTAAGAAAAATATGACAT+AGG - chr8_2:5837176-5837195 Msa1229880:intron 15.0%
!!! ATATGATTTTATTCAATAGA+TGG - chr8_2:5837335-5837354 Msa1229880:intron 15.0%
!! ATTGATATAAACCAAATTAA+TGG - chr8_2:5837673-5837692 Msa1229880:intron 15.0%
!!! AGTTTGTTAATGTTATTTTT+CGG - chr8_2:5837775-5837794 Msa1229880:CDS 15.0%
!! TAGTTAATCACATATTTAAA+CGG + chr8_2:5838433-5838452 None:intergenic 15.0%
!!! AGTGAATTTCTATATATTTT+GGG + chr8_2:5838940-5838959 None:intergenic 15.0%
!! TTCATACTAAAAAAACATTT+CGG + chr8_2:5840475-5840494 None:intergenic 15.0%
!!! ATGATATTGCATTTAAAATT+AGG - chr8_2:5840829-5840848 Msa1229880:five_prime_UTR 15.0%
!!! CTCTTTTTCATTTTCTTTTT+TGG - chr8_2:5836404-5836423 Msa1229880:intron 20.0%
!!! TAACAAATTTTTGTCACATA+GGG + chr8_2:5836833-5836852 None:intergenic 20.0%
!! AATCATATCAACAACAAAAT+TGG + chr8_2:5836989-5837008 None:intergenic 20.0%
!!! ATTTTGTTGTTGATATGATT+AGG - chr8_2:5836989-5837008 Msa1229880:intron 20.0%
!!! TATAGTTTCTTCTATTTTGT+TGG - chr8_2:5837588-5837607 Msa1229880:intron 20.0%
!!! ATTTTTCAGAACAAATATTG+AGG - chr8_2:5837743-5837762 Msa1229880:CDS 20.0%
!!! TTTTTCAGAACAAATATTGA+GGG - chr8_2:5837744-5837763 Msa1229880:CDS 20.0%
!! TAACATTAACAAACTAAAGT+TGG + chr8_2:5837770-5837789 None:intergenic 20.0%
!! AAAGATAAATATTCACCTTT+AGG + chr8_2:5838915-5838934 None:intergenic 20.0%
!!! CAGTGAATTTCTATATATTT+TGG + chr8_2:5838941-5838960 None:intergenic 20.0%
!!! GTTAATTGCATACTTTATTT+TGG + chr8_2:5838993-5839012 None:intergenic 20.0%
!!! TTTTATTTAAGCAAAGTAAC+AGG + chr8_2:5839397-5839416 None:intergenic 20.0%
!! ACATATACTAATAGAAACTA+TGG - chr8_2:5839469-5839488 Msa1229880:intron 20.0%
!!! TCAGATTTTTAAAAATAGAG+AGG - chr8_2:5839714-5839733 Msa1229880:intron 20.0%
!!! CAGATTTTTAAAAATAGAGA+GGG - chr8_2:5839715-5839734 Msa1229880:intron 20.0%
!!! TGAATGTAGTTTTTAATGAA+AGG - chr8_2:5840234-5840253 Msa1229880:intron 20.0%
!! ATTGTGTTTGAATATATACT+TGG + chr8_2:5840766-5840785 None:intergenic 20.0%
!! ACAACATAAACAAATATGTT+TGG + chr8_2:5840794-5840813 None:intergenic 20.0%
!! ATATGTTTCTTTTCCTAAGT+TGG - chr8_2:5835991-5836010 Msa1229880:three_prime_UTR 25.0%
! GCACAAAAAATACTAACTAA+CGG - chr8_2:5836013-5836032 Msa1229880:three_prime_UTR 25.0%
!!! CTGTAATTCTGAGATATTAT+TGG - chr8_2:5836456-5836475 Msa1229880:intron 25.0%
! ATTATTGGAATCTTCTAAAC+AGG - chr8_2:5836471-5836490 Msa1229880:intron 25.0%
! TAAACAGGAAAATATTCAGA+TGG - chr8_2:5836486-5836505 Msa1229880:intron 25.0%
! AAACAGGAAAATATTCAGAT+GGG - chr8_2:5836487-5836506 Msa1229880:intron 25.0%
! TTTCGACAACAAATAAGAAA+TGG + chr8_2:5836579-5836598 None:intergenic 25.0%
!!! TGGACAAACTTTATTTTTTC+CGG + chr8_2:5836659-5836678 None:intergenic 25.0%
!! CTAACAAATTTTTGTCACAT+AGG + chr8_2:5836834-5836853 None:intergenic 25.0%
! TAAATTGATTGTGAAGTGTA+AGG - chr8_2:5836860-5836879 Msa1229880:intron 25.0%
!! ATTTGAACTTCATTAAGTTG+AGG - chr8_2:5836922-5836941 Msa1229880:intron 25.0%
!! AAAGCAAAAGATCCAATTTT+TGG - chr8_2:5837044-5837063 Msa1229880:intron 25.0%
!! AAGCAAAAGATCCAATTTTT+GGG - chr8_2:5837045-5837064 Msa1229880:intron 25.0%
! ATATGACATAGGAAAAATTG+CGG - chr8_2:5837187-5837206 Msa1229880:intron 25.0%
! TATGATTCAATTAGTAACGT+AGG + chr8_2:5837307-5837326 None:intergenic 25.0%
!!! TCTAAAAGCATCCATTAATT+TGG + chr8_2:5837687-5837706 None:intergenic 25.0%
! CCTGAAATAGAAAAAGAAAA+TGG + chr8_2:5837894-5837913 None:intergenic 25.0%
!! CCATTTTCTTTTTCTATTTC+AGG - chr8_2:5837891-5837910 Msa1229880:intron 25.0%
!! TCTTTTTCTATTTCAGGATT+TGG - chr8_2:5837897-5837916 Msa1229880:intron 25.0%
!! CTTTTTCTATTTCAGGATTT+GGG - chr8_2:5837898-5837917 Msa1229880:intron 25.0%
! CAACTCAAAAATAAACTTAC+AGG + chr8_2:5838352-5838371 None:intergenic 25.0%
! TCACATTAAATGGAATCTTT+AGG + chr8_2:5838720-5838739 None:intergenic 25.0%
! AGAGAATCAATCACATTAAA+TGG + chr8_2:5838730-5838749 None:intergenic 25.0%
!! TCTTCTTCTTTCATTTTGTA+TGG + chr8_2:5838808-5838827 None:intergenic 25.0%
! TATCTGTGATTTGAGAAATT+TGG - chr8_2:5839033-5839052 Msa1229880:intron 25.0%
! TTAATTCATATTTCCTTCAG+AGG - chr8_2:5839063-5839082 Msa1229880:intron 25.0%
! CTTAAGACAAATATGTGAAA+AGG + chr8_2:5839254-5839273 None:intergenic 25.0%
! ACTAATAGAAACTATGGTTA+AGG - chr8_2:5839475-5839494 Msa1229880:intron 25.0%
! CTAATAGAAACTATGGTTAA+GGG - chr8_2:5839476-5839495 Msa1229880:intron 25.0%
! AGTGTTAGAATTAGACATAT+AGG - chr8_2:5840374-5840393 Msa1229880:intron 25.0%
!! ATAAACTTCTTGCTCTTTTT+AGG - chr8_2:5840586-5840605 Msa1229880:CDS 25.0%
! CAGATATTCAAATCCAAATT+TGG - chr8_2:5840857-5840876 Msa1229880:five_prime_UTR 25.0%
! ATTCAAATCCAAATTTGGAT+AGG - chr8_2:5840862-5840881 Msa1229880:five_prime_UTR 25.0%
! TTCAAATCCAAATTTGGATA+GGG - chr8_2:5840863-5840882 Msa1229880:five_prime_UTR 25.0%
!!! AGTATTTTTTGTGCCAACTT+AGG + chr8_2:5836007-5836026 None:intergenic 30.0%
AGTTTGTGTCTTTGTGTTAA+TGG - chr8_2:5836251-5836270 Msa1229880:CDS 30.0%
ATTGGAAACAAAGTATGAAG+AGG + chr8_2:5836296-5836315 None:intergenic 30.0%
TCTCTTGAACTATTGTTAGA+AGG - chr8_2:5836711-5836730 Msa1229880:intron 30.0%
CTCTTGAACTATTGTTAGAA+GGG - chr8_2:5836712-5836731 Msa1229880:intron 30.0%
TCTTGAACTATTGTTAGAAG+GGG - chr8_2:5836713-5836732 Msa1229880:intron 30.0%
CAGAATTGTTTAGATAACTG+TGG + chr8_2:5836798-5836817 None:intergenic 30.0%
GTTAAAGCTTATTCAATTCC+TGG - chr8_2:5837011-5837030 Msa1229880:intron 30.0%
CTCATTTAAGAATATGCCTA+GGG + chr8_2:5837446-5837465 None:intergenic 30.0%
AACTGAAAGCTTGATTATCA+AGG + chr8_2:5837813-5837832 None:intergenic 30.0%
ATAAGCCTCAACCTAAATAT+GGG - chr8_2:5837928-5837947 Msa1229880:intron 30.0%
! CAATTTTTGTCGCTATGAAA+CGG + chr8_2:5837990-5838009 None:intergenic 30.0%
!! ATTAGTCTTGTTTGTTTGCA+GGG - chr8_2:5838250-5838269 Msa1229880:intron 30.0%
! TTAAGTTGTTAATCTTCTCC+TGG + chr8_2:5838315-5838334 None:intergenic 30.0%
CTCAAAAATAAACTTACAGG+TGG + chr8_2:5838349-5838368 None:intergenic 30.0%
AATTTCGACAACAATTTCGA+TGG - chr8_2:5838401-5838420 Msa1229880:intron 30.0%
TTGCTGAATATAGACAATGT+AGG + chr8_2:5838628-5838647 None:intergenic 30.0%
AATGAAAGAAGAAGATGCAA+TGG - chr8_2:5838813-5838832 Msa1229880:intron 30.0%
GGATATGCAAACAATACTAA+AGG - chr8_2:5839094-5839113 Msa1229880:intron 30.0%
CAATACTAAAGGACAAAAGT+TGG - chr8_2:5839105-5839124 Msa1229880:intron 30.0%
AACTTCAATAAGCTTATGGT+TGG + chr8_2:5839210-5839229 None:intergenic 30.0%
TTGGAACTTCAATAAGCTTA+TGG + chr8_2:5839214-5839233 None:intergenic 30.0%
TAAGCTTATTGAAGTTCCAA+AGG - chr8_2:5839214-5839233 Msa1229880:intron 30.0%
TTCACATATTTGTCTTAAGC+TGG - chr8_2:5839255-5839274 Msa1229880:intron 30.0%
AGGAAAAGAATGATACTCTT+TGG + chr8_2:5839315-5839334 None:intergenic 30.0%
GTTTATGATTGCATACTCAT+TGG + chr8_2:5839421-5839440 None:intergenic 30.0%
AACTCTTCACAATGAAAATG+TGG - chr8_2:5839509-5839528 Msa1229880:CDS 30.0%
!! TACAAGGGGCATTTATAAAT+CGG + chr8_2:5839539-5839558 None:intergenic 30.0%
!!! TGACTGTTTTGATGATAGTT+TGG - chr8_2:5839569-5839588 Msa1229880:intron 30.0%
!!! TGTTTTGATGATAGTTTGGT+AGG - chr8_2:5839573-5839592 Msa1229880:intron 30.0%
AAAAGTTGAATTTCCACACA+AGG + chr8_2:5839951-5839970 None:intergenic 30.0%
! TCAACTTTTTGTCAGAAGAA+TGG - chr8_2:5839962-5839981 Msa1229880:intron 30.0%
AGGCAAGAAATATAAATCTC+TGG - chr8_2:5839986-5840005 Msa1229880:intron 30.0%
AGATCTAGTATCTAGTATTG+TGG - chr8_2:5840080-5840099 Msa1229880:intron 30.0%
TGTGATTAAAGCAGTTTCAT+AGG - chr8_2:5840142-5840161 Msa1229880:intron 30.0%
GTGATTAAAGCAGTTTCATA+GGG - chr8_2:5840143-5840162 Msa1229880:intron 30.0%
TTTCATAGGGAGCTTAAATT+GGG - chr8_2:5840156-5840175 Msa1229880:intron 30.0%
TTTAATGAAAGGACCAAATG+CGG - chr8_2:5840245-5840264 Msa1229880:intron 30.0%
GTTCGAATTCTTAAGGAATT+AGG + chr8_2:5840313-5840332 None:intergenic 30.0%
TTAGACAACAAGGAATTCAA+TGG + chr8_2:5840407-5840426 None:intergenic 30.0%
ACATCTTTCTATTCTCCTAA+GGG - chr8_2:5840554-5840573 Msa1229880:CDS 30.0%
GTTTATTGTAACATTCCCTT+AGG + chr8_2:5840572-5840591 None:intergenic 30.0%
GAACTTGGACAACTTATTTA+TGG - chr8_2:5840641-5840660 Msa1229880:intron 30.0%
! ATCTGAAATTTAACCTGTGT+AGG - chr8_2:5840740-5840759 Msa1229880:CDS 30.0%
!! GAAAGAAGTGGTAGTTTGTT+TGG + chr8_2:5836098-5836117 None:intergenic 35.0%
! ATGACCATTCAAGCTTTTCA+TGG - chr8_2:5836123-5836142 Msa1229880:three_prime_UTR 35.0%
AGAACCATGAAAAGCTTGAA+TGG + chr8_2:5836130-5836149 None:intergenic 35.0%
CTGAACTGTAGTACTTCAAA+TGG - chr8_2:5836222-5836241 Msa1229880:three_prime_UTR 35.0%
AAACCATCACCAACAGAAAT+AGG + chr8_2:5836347-5836366 None:intergenic 35.0%
AAAAGAGTAGCTATGCTACT+AGG + chr8_2:5836391-5836410 None:intergenic 35.0%
AACCATTCATCACTTGGATT+AGG + chr8_2:5836513-5836532 None:intergenic 35.0%
TGCTTAAACCATTCATCACT+TGG + chr8_2:5836519-5836538 None:intergenic 35.0%
AGTGATGAATGGTTTAAGCA+AGG - chr8_2:5836519-5836538 Msa1229880:intron 35.0%
GTGATGAATGGTTTAAGCAA+GGG - chr8_2:5836520-5836539 Msa1229880:intron 35.0%
ATGGTTTAAGCAAGGGAAAA+TGG - chr8_2:5836527-5836546 Msa1229880:intron 35.0%
!!! TTTTTTTTGTCTTACCCCTC+CGG - chr8_2:5836603-5836622 Msa1229880:intron 35.0%
ATTTCCAAATCCTTGGAAAC+CGG + chr8_2:5836625-5836644 None:intergenic 35.0%
ACTCAAGATTTCCAAATCCT+TGG + chr8_2:5836632-5836651 None:intergenic 35.0%
GGATTTGGAAATCTTGAGTT+TGG - chr8_2:5836633-5836652 Msa1229880:intron 35.0%
!! TCCAATTTTTGGGCTAACAA+TGG - chr8_2:5837055-5837074 Msa1229880:intron 35.0%
!! CCAATTTTTGGGCTAACAAT+GGG - chr8_2:5837056-5837075 Msa1229880:intron 35.0%
! CCATGGATTAATATCACTGA+AGG + chr8_2:5837391-5837410 None:intergenic 35.0%
CCTTCAGTGATATTAATCCA+TGG - chr8_2:5837388-5837407 Msa1229880:intron 35.0%
AAATGAAACTCACCTGTGAA+GGG + chr8_2:5837417-5837436 None:intergenic 35.0%
! AGTTTCATTTGTTTCTCCCT+AGG - chr8_2:5837427-5837446 Msa1229880:intron 35.0%
GCTCATTTAAGAATATGCCT+AGG + chr8_2:5837447-5837466 None:intergenic 35.0%
TTTGCGATAAGAATATGCCT+AGG + chr8_2:5837501-5837520 None:intergenic 35.0%
TTCTTATCGCAAAGTTCTTC+CGG - chr8_2:5837508-5837527 Msa1229880:intron 35.0%
ACCTAGCCAATCAAATGTTA+CGG + chr8_2:5837555-5837574 None:intergenic 35.0%
!! ATGGATGCTTTTAGAAGCAT+AGG - chr8_2:5837692-5837711 Msa1229880:intron 35.0%
ACTCAAAGTTAGTAGAGATG+TGG - chr8_2:5837834-5837853 Msa1229880:intron 35.0%
GATAAGCCTCAACCTAAATA+TGG - chr8_2:5837927-5837946 Msa1229880:intron 35.0%
!! TCAAACCCATATTTAGGTTG+AGG + chr8_2:5837936-5837955 None:intergenic 35.0%
GTGTAGTCAAACCCATATTT+AGG + chr8_2:5837942-5837961 None:intergenic 35.0%
ACACAAGCAATTACCATCAA+GGG + chr8_2:5837964-5837983 None:intergenic 35.0%
ATGATGACACATATTCTGCA+TGG + chr8_2:5838110-5838129 None:intergenic 35.0%
CCATGATTCTTATTAGCCAA+GGG + chr8_2:5838194-5838213 None:intergenic 35.0%
TCCATGATTCTTATTAGCCA+AGG + chr8_2:5838195-5838214 None:intergenic 35.0%
!! CATTAGTCTTGTTTGTTTGC+AGG - chr8_2:5838249-5838268 Msa1229880:intron 35.0%
CTGAATATAGACAATGTAGG+TGG + chr8_2:5838625-5838644 None:intergenic 35.0%
ATATTCAGCAACTTTCTGCT+AGG - chr8_2:5838637-5838656 Msa1229880:CDS 35.0%
! GCTAGGTGAAATATTTTCAC+AGG - chr8_2:5838654-5838673 Msa1229880:intron 35.0%
TGATTCTCTTGTGAGTGTTT+AGG - chr8_2:5838741-5838760 Msa1229880:intron 35.0%
! TGAGTGTTTAGGATCCATTA+AGG - chr8_2:5838752-5838771 Msa1229880:CDS 35.0%
! GAGTGTTTAGGATCCATTAA+GGG - chr8_2:5838753-5838772 Msa1229880:CDS 35.0%
AACCATGAAGAAAGACCTAA+AGG - chr8_2:5838897-5838916 Msa1229880:intron 35.0%
! ATATTTCCTTCAGAGGTATG+TGG - chr8_2:5839070-5839089 Msa1229880:intron 35.0%
GGAATCTAAGCATTTACCTT+TGG + chr8_2:5839233-5839252 None:intergenic 35.0%
AGTCAATGATCTGACTACAA+GGG + chr8_2:5839554-5839573 None:intergenic 35.0%
CTAGAAGTAGCTTAATCTCA+TGG - chr8_2:5839629-5839648 Msa1229880:intron 35.0%
! ATATTATGCACTCACTGACT+CGG + chr8_2:5839674-5839693 None:intergenic 35.0%
CAGTCTAAGTTCTTAGGAAT+AGG + chr8_2:5839824-5839843 None:intergenic 35.0%
TCCTAAGAACTTAGACTGTT+AGG - chr8_2:5839826-5839845 Msa1229880:CDS 35.0%
ACCTAACAGTCTAAGTTCTT+AGG + chr8_2:5839830-5839849 None:intergenic 35.0%
GTTTCATAGGGAGCTTAAAT+TGG - chr8_2:5840155-5840174 Msa1229880:intron 35.0%
CTAGGAAATACAGGAATATG+TGG - chr8_2:5840185-5840204 Msa1229880:intron 35.0%
! CAAGCTTGTTCGAATTCTTA+AGG + chr8_2:5840320-5840339 None:intergenic 35.0%
CTTAAGAATTCGAACAAGCT+TGG - chr8_2:5840318-5840337 Msa1229880:intron 35.0%
!! TTGCACAAAAGTACTATGCT+TGG - chr8_2:5840496-5840515 Msa1229880:intron 35.0%
AGTACTATGCTTGGAAACTA+TGG - chr8_2:5840505-5840524 Msa1229880:intron 35.0%
CACATCTTTCTATTCTCCTA+AGG - chr8_2:5840553-5840572 Msa1229880:CDS 35.0%
AATATATACTTGGCCTACAC+AGG + chr8_2:5840756-5840775 None:intergenic 35.0%
GACATTTCCCTATCCAAATT+TGG + chr8_2:5840873-5840892 None:intergenic 35.0%
!! TGGTAGTTTGTTTGGTTGGT+TGG + chr8_2:5836090-5836109 None:intergenic 40.0%
!! GAAGTGGTAGTTTGTTTGGT+TGG + chr8_2:5836094-5836113 None:intergenic 40.0%
TGGTCATTGCATGAAAGAAG+TGG + chr8_2:5836110-5836129 None:intergenic 40.0%
AAGAAGATTGAAGGTGGGAA+TGG + chr8_2:5836167-5836186 None:intergenic 40.0%
TGTGGAAGAAGATTGAAGGT+GGG + chr8_2:5836172-5836191 None:intergenic 40.0%
TTGTGGAAGAAGATTGAAGG+TGG + chr8_2:5836173-5836192 None:intergenic 40.0%
GCTTTGTGGAAGAAGATTGA+AGG + chr8_2:5836176-5836195 None:intergenic 40.0%
! TACTTTGTTTCCAATGCTGC+AGG - chr8_2:5836301-5836320 Msa1229880:CDS 40.0%
AGATAATCATCCTGCAGCAT+TGG + chr8_2:5836314-5836333 None:intergenic 40.0%
TTGGAAATCTTGAGTTTGGC+CGG - chr8_2:5836637-5836656 Msa1229880:intron 40.0%
ATCCTGGCTAAAACAATCGT+TGG + chr8_2:5836679-5836698 None:intergenic 40.0%
GCTTATTCAATTCCTGGAAC+TGG - chr8_2:5837017-5837036 Msa1229880:intron 40.0%
!!! TTTGCTTTTTCACCAGTTCC+AGG + chr8_2:5837032-5837051 None:intergenic 40.0%
CCCATTGTTAGCCCAAAAAT+TGG + chr8_2:5837059-5837078 None:intergenic 40.0%
TAATTACCTGAAACGATCGC+CGG + chr8_2:5837099-5837118 None:intergenic 40.0%
!!! AGATGGTTTTGTGTCGAAAG+CGG - chr8_2:5837352-5837371 Msa1229880:intron 40.0%
CAAATGAAACTCACCTGTGA+AGG + chr8_2:5837418-5837437 None:intergenic 40.0%
TGATTTCTATGTTGCTGCCT+AGG - chr8_2:5837481-5837500 Msa1229880:intron 40.0%
! TTGTGTCGATGCTTACTCTA+TGG - chr8_2:5837644-5837663 Msa1229880:intron 40.0%
CACACAAGCAATTACCATCA+AGG + chr8_2:5837965-5837984 None:intergenic 40.0%
TTGCACAACAAGTGAGACTT+TGG + chr8_2:5838163-5838182 None:intergenic 40.0%
TTGTGCAAGTAAGTTTCCCT+TGG - chr8_2:5838175-5838194 Msa1229880:intron 40.0%
CCCTTGGCTAATAAGAATCA+TGG - chr8_2:5838191-5838210 Msa1229880:intron 40.0%
CTGGCATACTTAACTACAAC+TGG + chr8_2:5838286-5838305 None:intergenic 40.0%
AGACAATGTAGGTGGAAGTT+TGG + chr8_2:5838617-5838636 None:intergenic 40.0%
AGAAGACCCTATCTCATATC+TGG - chr8_2:5838841-5838860 Msa1229880:intron 40.0%
TAGGTCTTTCTTCATGGTTC+TGG + chr8_2:5838896-5838915 None:intergenic 40.0%
CACCTTTAGGTCTTTCTTCA+TGG + chr8_2:5838902-5838921 None:intergenic 40.0%
! ATGCTCATATAGTAGCCTTG+CGG + chr8_2:5839347-5839366 None:intergenic 40.0%
AAGCAAAGTAACAGGTAACG+AGG + chr8_2:5839389-5839408 None:intergenic 40.0%
GTCAATGATCTGACTACAAG+GGG + chr8_2:5839553-5839572 None:intergenic 40.0%
CAGTCAATGATCTGACTACA+AGG + chr8_2:5839555-5839574 None:intergenic 40.0%
TAGGTTTGACGCTAAACTTC+AGG - chr8_2:5839592-5839611 Msa1229880:intron 40.0%
GTAGCTTAATCTCATGGATG+AGG - chr8_2:5839635-5839654 Msa1229880:intron 40.0%
!! TATTATGCACTCACTGACTC+GGG + chr8_2:5839673-5839692 None:intergenic 40.0%
!! ACCTCCTGAGCTTTGAAAAA+TGG - chr8_2:5839905-5839924 Msa1229880:intron 40.0%
!!! TTGGCCATTTTTCAAAGCTC+AGG + chr8_2:5839912-5839931 None:intergenic 40.0%
! CTTTTTGTCAGAAGAATGGC+AGG - chr8_2:5839966-5839985 Msa1229880:intron 40.0%
TTCTAATACCGTGTCAGGAA+TGG - chr8_2:5840027-5840046 Msa1229880:intron 40.0%
AAGATGATCCATTCCTGACA+CGG + chr8_2:5840038-5840057 None:intergenic 40.0%
TAGGGAGCTTAAATTGGGAA+AGG - chr8_2:5840161-5840180 Msa1229880:intron 40.0%
GCTTAAATTGGGAAAGGTCT+AGG - chr8_2:5840167-5840186 Msa1229880:intron 40.0%
! TTGATGATCAATGCCGCATT+TGG + chr8_2:5840261-5840280 None:intergenic 40.0%
CCAAGCTATCTTAGACAACA+AGG + chr8_2:5840417-5840436 None:intergenic 40.0%
! CCTTGTTGTCTAAGATAGCT+TGG - chr8_2:5840414-5840433 Msa1229880:CDS 40.0%
!! ACTTCTTGCTCTTTTTAGGC+TGG - chr8_2:5840590-5840609 Msa1229880:intron 40.0%
CCTTGAAAGGAAACGCTTTG+TGG + chr8_2:5836190-5836209 None:intergenic 45.0%
! CCACAAAGCGTTTCCTTTCA+AGG - chr8_2:5836187-5836206 Msa1229880:three_prime_UTR 45.0%
GCTTCAGAGTCTTCCTTGAA+AGG + chr8_2:5836203-5836222 None:intergenic 45.0%
GCTGCAGGATGATTATCTTC+TGG - chr8_2:5836316-5836335 Msa1229880:intron 45.0%
!! CTGGATGCTCCTATTTCTGT+TGG - chr8_2:5836335-5836354 Msa1229880:intron 45.0%
!! GCTCCTATTTCTGTTGGTGA+TGG - chr8_2:5836341-5836360 Msa1229880:intron 45.0%
! GGTGATGGTTTCTCTTTCAG+TGG - chr8_2:5836356-5836375 Msa1229880:intron 45.0%
GATGGTTTCTCTTTCAGTGG+AGG - chr8_2:5836359-5836378 Msa1229880:intron 45.0%
GGCCTAATCCAAGTGATGAA+TGG - chr8_2:5836508-5836527 Msa1229880:intron 45.0%
!!! GTCCAACGATTGTTTTAGCC+AGG - chr8_2:5836674-5836693 Msa1229880:intron 45.0%
GAGAACTCGAGTTCAAATCC+TGG + chr8_2:5836695-5836714 None:intergenic 45.0%
AATCCATGGTTTCCCTTCAC+AGG - chr8_2:5837402-5837421 Msa1229880:intron 45.0%
ATCGCGCCGTAACATTTGAT+TGG - chr8_2:5837546-5837565 Msa1229880:intron 45.0%
! GCCGTAACATTTGATTGGCT+AGG - chr8_2:5837551-5837570 Msa1229880:intron 45.0%
TAAGTATGCCAGCAAACACC+AGG - chr8_2:5838294-5838313 Msa1229880:CDS 45.0%
AATCTTCTCCTGGTGTTTGC+TGG + chr8_2:5838305-5838324 None:intergenic 45.0%
AGGTGGAAGTTTGGCATGTT+GGG + chr8_2:5838608-5838627 None:intergenic 45.0%
TAGGTGGAAGTTTGGCATGT+TGG + chr8_2:5838609-5838628 None:intergenic 45.0%
GAGGAGCCAGATATGAGATA+GGG + chr8_2:5838850-5838869 None:intergenic 45.0%
TGAGGAGCCAGATATGAGAT+AGG + chr8_2:5838851-5838870 None:intergenic 45.0%
! TATCTCATATCTGGCTCCTC+AGG - chr8_2:5838850-5838869 Msa1229880:intron 45.0%
TGCATTCAATGCAAAGCCTG+AGG + chr8_2:5838869-5838888 None:intergenic 45.0%
! TTTCCTTCAGAGGTATGTGG+AGG - chr8_2:5839073-5839092 Msa1229880:intron 45.0%
TATCCTCCACATACCTCTGA+AGG + chr8_2:5839079-5839098 None:intergenic 45.0%
ATGTTCGAACCACCGTATGT+TGG - chr8_2:5839129-5839148 Msa1229880:intron 45.0%
TGTTCGAACCACCGTATGTT+GGG - chr8_2:5839130-5839149 Msa1229880:intron 45.0%
GGAGTGGAAGATTTCTGCAA+AGG - chr8_2:5839182-5839201 Msa1229880:intron 45.0%
! TCATATAGTAGCCTTGCGGA+AGG + chr8_2:5839343-5839362 None:intergenic 45.0%
CTCATGGATGAGGAATGTCA+AGG - chr8_2:5839645-5839664 Msa1229880:intron 45.0%
GGTGCATTAGAGAAACGGTA+TGG + chr8_2:5839872-5839891 None:intergenic 45.0%
! GAGGAGGTGCATTAGAGAAA+CGG + chr8_2:5839877-5839896 None:intergenic 45.0%
!!! GCCATTTTTCAAAGCTCAGG+AGG + chr8_2:5839909-5839928 None:intergenic 45.0%
AGGTAGATGAGCTAGTGCAT+TGG + chr8_2:5839931-5839950 None:intergenic 45.0%
ACTAGCTCATCTACCTTGTG+TGG - chr8_2:5839935-5839954 Msa1229880:intron 45.0%
TCTGGCGCACTAGATTATAG+AGG - chr8_2:5840004-5840023 Msa1229880:intron 45.0%
! AGAGGTTCTAATACCGTGTC+AGG - chr8_2:5840022-5840041 Msa1229880:intron 45.0%
TGCTGCTATAGCACAGTACA+GGG + chr8_2:5840106-5840125 None:intergenic 45.0%
ATGCTGCTATAGCACAGTAC+AGG + chr8_2:5840107-5840126 None:intergenic 45.0%
GGGAAAGGTCTAGGAAATAC+AGG - chr8_2:5840176-5840195 Msa1229880:intron 45.0%
TGATCATCAACACTGGTGTC+TGG - chr8_2:5840271-5840290 Msa1229880:intron 45.0%
CATCATGCACAGGAAGATTG+CGG - chr8_2:5840614-5840633 Msa1229880:intron 45.0%
! GGTTGGTTGGAGAGTGAAGA+GGG + chr8_2:5836077-5836096 None:intergenic 50.0%
! TGGTTGGTTGGAGAGTGAAG+AGG + chr8_2:5836078-5836097 None:intergenic 50.0%
CAAATCCTTGGAAACCGGAG+GGG + chr8_2:5836620-5836639 None:intergenic 50.0%
CCAAATCCTTGGAAACCGGA+GGG + chr8_2:5836621-5836640 None:intergenic 50.0%
TCCAAATCCTTGGAAACCGG+AGG + chr8_2:5836622-5836641 None:intergenic 50.0%
! GGTACTAGCTCTCAAGCTAC+CGG - chr8_2:5837077-5837096 Msa1229880:intron 50.0%
TCACCTGTGAAGGGAAACCA+TGG + chr8_2:5837408-5837427 None:intergenic 50.0%
AGTTCTTCCGGTACTCTCCA+AGG - chr8_2:5837520-5837539 Msa1229880:intron 50.0%
! CGATAGTCCTTGGAGAGTAC+CGG + chr8_2:5837530-5837549 None:intergenic 50.0%
GGGTTTGACTACACCCTTGA+TGG - chr8_2:5837948-5837967 Msa1229880:intron 50.0%
GCTTTGTCACTGGCCCTTAA+TGG + chr8_2:5838769-5838788 None:intergenic 50.0%
GCTTGTCAGTGCTTTGTCAC+TGG + chr8_2:5838779-5838798 None:intergenic 50.0%
!! GACAAAGCACTGACAAGCTG+TGG - chr8_2:5838781-5838800 Msa1229880:CDS 50.0%
GTTCGAACCACCGTATGTTG+GGG - chr8_2:5839131-5839150 Msa1229880:intron 50.0%
ATCTCTCTGGCCCCAACATA+CGG + chr8_2:5839144-5839163 None:intergenic 50.0%
!! GCGGCATTGATCATCAACAC+TGG - chr8_2:5840264-5840283 Msa1229880:intron 50.0%
TTAGGCTGGACATCATGCAC+AGG - chr8_2:5840604-5840623 Msa1229880:intron 50.0%
GAAGATTGCGGCGAAGAACT+TGG - chr8_2:5840626-5840645 Msa1229880:intron 50.0%
TCTTACCCCTCCGGTTTCCA+AGG - chr8_2:5836612-5836631 Msa1229880:intron 55.0%
CCCTCCGGTTTCCAAGGATT+TGG - chr8_2:5836618-5836637 Msa1229880:intron 55.0%
AAGCTACCGGCGATCGTTTC+AGG - chr8_2:5837090-5837109 Msa1229880:intron 55.0%
TGTTACGGCGCGATAGTCCT+TGG + chr8_2:5837540-5837559 None:intergenic 55.0%
AGCTCAACCAGCGATCTCTC+TGG + chr8_2:5839157-5839176 None:intergenic 55.0%
! GATCGCTGGTTGAGCTACGA+TGG - chr8_2:5839161-5839180 Msa1229880:intron 55.0%
CTGGTTGAGCTACGATGGAG+TGG - chr8_2:5839166-5839185 Msa1229880:intron 55.0%
TTTCCTGCTTGCCTTCCGCA+AGG - chr8_2:5839329-5839348 Msa1229880:intron 55.0%
TCTCTGGCCCCAACATACGG+TGG + chr8_2:5839141-5839160 None:intergenic 60.0%
! TAGCCTTGCGGAAGGCAAGC+AGG + chr8_2:5839335-5839354 None:intergenic 60.0%
CAGGAGGTTCTCGTGTGAGG+AGG + chr8_2:5839893-5839912 None:intergenic 60.0%
GCTCAGGAGGTTCTCGTGTG+AGG + chr8_2:5839896-5839915 None:intergenic 60.0%
GTTGGGGCCAGAGAGATCGC+TGG - chr8_2:5839147-5839166 Msa1229880:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 5835981 5840948 5835981 ID=Msa1229880;Name=Msa1229880
chr8_2 mRNA 5835981 5840948 5835981 ID=Msa1229880-mRNA-1;Parent=Msa1229880;Name=Msa1229880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=142|1|1|1|1|1|13|263|384
chr8_2 exon 5835981 5836321 5835981 ID=Msa1229880-mRNA-1:exon:2067;Parent=Msa1229880-mRNA-1
chr8_2 exon 5837694 5837846 5837694 ID=Msa1229880-mRNA-1:exon:2066;Parent=Msa1229880-mRNA-1
chr8_2 exon 5838011 5838166 5838011 ID=Msa1229880-mRNA-1:exon:2065;Parent=Msa1229880-mRNA-1
chr8_2 exon 5838254 5838331 5838254 ID=Msa1229880-mRNA-1:exon:2064;Parent=Msa1229880-mRNA-1
chr8_2 exon 5838578 5838658 5838578 ID=Msa1229880-mRNA-1:exon:2063;Parent=Msa1229880-mRNA-1
chr8_2 exon 5838747 5838814 5838747 ID=Msa1229880-mRNA-1:exon:2062;Parent=Msa1229880-mRNA-1
chr8_2 exon 5838960 5839016 5838960 ID=Msa1229880-mRNA-1:exon:2061;Parent=Msa1229880-mRNA-1
chr8_2 exon 5839357 5839426 5839357 ID=Msa1229880-mRNA-1:exon:2060;Parent=Msa1229880-mRNA-1
chr8_2 exon 5839506 5839575 5839506 ID=Msa1229880-mRNA-1:exon:2059;Parent=Msa1229880-mRNA-1
chr8_2 exon 5839818 5839918 5839818 ID=Msa1229880-mRNA-1:exon:2058;Parent=Msa1229880-mRNA-1
chr8_2 exon 5840381 5840436 5840381 ID=Msa1229880-mRNA-1:exon:2057;Parent=Msa1229880-mRNA-1
chr8_2 exon 5840549 5840606 5840549 ID=Msa1229880-mRNA-1:exon:2056;Parent=Msa1229880-mRNA-1
chr8_2 exon 5840678 5840948 5840678 ID=Msa1229880-mRNA-1:exon:2055;Parent=Msa1229880-mRNA-1
chr8_2 five_prime_UTR 5840807 5840948 5840807 ID=Msa1229880-mRNA-1:five_prime_utr;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5840678 5840806 5840678 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5840549 5840606 5840549 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5840381 5840436 5840381 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5839818 5839918 5839818 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5839506 5839575 5839506 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5839357 5839426 5839357 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5838960 5839016 5838960 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5838747 5838814 5838747 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5838578 5838658 5838578 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5838254 5838331 5838254 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5838011 5838166 5838011 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5837694 5837846 5837694 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 CDS 5836244 5836321 5836244 ID=Msa1229880-mRNA-1:cds;Parent=Msa1229880-mRNA-1
chr8_2 three_prime_UTR 5835981 5836243 5835981 ID=Msa1229880-mRNA-1:three_prime_utr;Parent=Msa1229880-mRNA-1
Gene Sequence

>Msa1229880

ATGACCATTCAAGCTTTTCATGGTTCTTCTTCTTGTTACTTCCATTCCCACCTTCAATCTTCTTCCACAAAGCGTTTCCTTTCAAGGAAGACTCTGAAGCTGAACTGTAGTACTTCAAATGGAGACAAAGATGATTATCTTCTGGATGCTCCTATTTCTGTTGGTGATGGTTTCTCTTTCAGTGGAGGAAAATATTCAGATGGGCCTAATCCAAGTGATGAATGGTTTAAGCAAGGGAAAATGGTTAAAGCTTATTCAATTCCTGGAACTGGTGAAAAAGCAAAAGATCCAATTTTTGGGCTAACAATGGGTACTAGCTCTCAAGCTACCGGCGATCGTTTCAGATGGTTTTGTGTCGAAAGCGGAAGTGTTGATAATCCTTCAGTGATATTAATCCATGGTTTCCCTTCACAGGCATATTCTTATCGCAAAGTTCTTCCGGTACTCTCCAAGGACTATCGCGCCGTAACATTTGATTGGCTAGGATTTGGGTTTTCTGATAAGCCTCAACCTAAATATGGGTTTGACTACACCCTTGATGAATATGTGTCATCATTAGAGTCACTTATTGATGAACTAGCTGTTACCAAAGTCTCACTTGTTGTGCAAGGATATTTTGCACCAGTTGTAGTTAAGTATGCCAGCAAACACCAGGAGAAGATTAACAACTTAATACTCATTAATCCACCTTTAACAGCCCAACATGCCAAACTTCCACCTACATTGTCTATATTCAGCAACTTTCTGCTAGGTGAAATATTTTCACAGGATCCATTAAGGGCCAGTGACAAAGCACTGACAAGCTGTGGACCATACAAAATGAAAGAAGAAGATGCAATGGTCTACAGAAGACCCTATCTCATATCTGGCTCCTCAGGCTTTGCATTGAATGCAATCACCAGAACCATGAAGAAAGACCTAAAGAGGTATGTGGAGGATATGCAAACAATACTAAAGGACAAAAGTTGGAATGTTCGAACCACCGTATGTTGGGGCCAGAGAGATCGCTGGTTGAGCTACGATGGAGTGGAAGATTTCTGCAAAGGTTCCAACCATAAGCTTATTGAAGTTCCAAAGGCTGGACATCATGCACAGGAAGATTGCGGCGAAGAACTTGGACAACTTATTTATGGAATAATAAGAAAAAAGAACTAA

Protein sequence

>Msa1229880

MTIQAFHGSSSCYFHSHLQSSSTKRFLSRKTLKLNCSTSNGDKDDYLLDAPISVGDGFSFSGGKYSDGPNPSDEWFKQGKMVKAYSIPGTGEKAKDPIFGLTMGTSSQATGDRFRWFCVESGSVDNPSVILIHGFPSQAYSYRKVLPVLSKDYRAVTFDWLGFGFSDKPQPKYGFDYTLDEYVSSLESLIDELAVTKVSLVVQGYFAPVVVKYASKHQEKINNLILINPPLTAQHAKLPPTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYKMKEEDAMVYRRPYLISGSSGFALNAITRTMKKDLKRYVEDMQTILKDKSWNVRTTVCWGQRDRWLSYDGVEDFCKGSNHKLIEVPKAGHHAQEDCGEELGQLIYGIIRKKN*