AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134830 MtrunA17_Chr7g0215351 69.006 171 8 1 11 136 11 181 1.99e-79 232
Msa1134830 MtrunA17_Chr7g0215381 68.421 171 9 1 11 136 11 181 3.30e-79 231
Msa1134830 MtrunA17_Chr7g0215421 69.006 171 8 1 11 136 11 181 4.84e-79 231
Msa1134830 MtrunA17_Chr7g0215361 68.824 170 8 1 12 136 12 181 9.55e-79 230
Msa1134830 MtrunA17_Chr7g0215431 68.235 170 9 1 12 136 12 181 6.64e-78 228
Msa1134830 MtrunA17_Chr6g0457471 61.453 179 23 2 4 136 2 180 5.63e-72 213
Msa1134830 MtrunA17_Chr6g0457461 60.335 179 22 3 4 136 2 177 1.43e-68 204
Msa1134830 MtrunA17_Chr4g0072241 48.649 74 38 0 62 135 96 169 1.05e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134830 AT5G38410.1 51.648 182 38 3 1 136 1 178 1.37e-56 174
Msa1134830 AT5G38410.3 50.267 187 38 3 1 136 1 183 1.01e-55 172
Msa1134830 AT5G38430.1 50.549 182 40 3 1 136 1 178 6.83e-55 170
Msa1134830 AT5G38430.2 50.549 182 40 3 1 136 1 178 6.83e-55 170
Msa1134830 AT1G67090.1 50.549 182 40 3 1 136 1 178 8.80e-55 170
Msa1134830 AT5G38420.1 50.549 182 40 3 1 136 1 178 1.09e-54 169
Msa1134830 AT5G38410.2 51.429 175 42 4 1 136 1 171 6.88e-53 165
Msa1134830 AT1G67090.2 44.538 119 46 7 1 118 1 100 1.04e-15 69.3

Find 44 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATAAGACCATAATAT+TGG 0.289906 7_4:+1466229 Msa1134830:five_prime_UTR
GGCGCGGTGGCTCCATTTGT+TGG 0.318301 7_4:+1466425 Msa1134830:CDS
TCTTTGTTGACCTTTGTAAC+TGG 0.323260 7_4:-1466470 None:intergenic
AAGACCATAATATTGGAAAT+AGG 0.332452 7_4:+1466236 Msa1134830:five_prime_UTR
CATATTCACAACCAACAAAA+TGG 0.334950 7_4:+1466187 None:intergenic
GATACTATGACGGACGTTAC+TGG 0.345500 7_4:+1467129 Msa1134830:CDS
CTTTACTAGTGAACTAAGTA+AGG 0.376005 7_4:+1466326 Msa1134830:five_prime_UTR
ATGTGGAATTTGCCTTTGTT+TGG 0.407708 7_4:+1467155 Msa1134830:CDS
TGATGCTTCTCAAGTGTTGA+AGG 0.410018 7_4:+1467184 Msa1134830:CDS
GAAATTACAAACAGAACAAA+TGG 0.425519 7_4:-1467368 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 7_4:+1466394 Msa1134830:CDS
AATTTACTGTTTGCCATTGA+AGG 0.435829 7_4:+1467330 Msa1134830:three_prime_UTR
ATGATACGGACAAAGGCATC+AGG 0.443523 7_4:-1467233 None:intergenic
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_4:+1467236 Msa1134830:CDS
CGTGCCTCTTCGGTACAATC+TGG 0.487772 7_4:+1466404 Msa1134830:CDS
GTTGGACTAAAGTCCATGGC+TGG 0.513160 7_4:+1466443 Msa1134830:CDS
CTTTGTTGACCTTTGTAACT+GGG 0.514716 7_4:-1466469 None:intergenic
TCTCAAATTTAGTAGACTGC+AGG 0.515110 7_4:-1467308 None:intergenic
CGTGAGAACCACAGTTCACC+AGG 0.516570 7_4:+1467107 Msa1134830:CDS
ATGGACTTTAGTCCAACAAA+TGG 0.519141 7_4:-1466437 None:intergenic
TATTATGGTCTTATAAATTG+TGG 0.521418 7_4:-1466225 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.537419 7_4:-1466501 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 7_4:-1467125 None:intergenic
ACTTCCATTGCAAGCAATGG+TGG 0.573273 7_4:+1466497 Msa1134830:CDS
CGTTGTCGAATCCGATGATA+CGG 0.577082 7_4:-1467247 None:intergenic
TTTACTAGTGAACTAAGTAA+GGG 0.581770 7_4:+1466327 Msa1134830:five_prime_UTR
ATTACTTCCATTGCAAGCAA+TGG 0.582522 7_4:+1466494 Msa1134830:CDS
CTGGTGAACTGTGGTTCTCA+CGG 0.583102 7_4:-1467106 None:intergenic
ATTTGTTGGACTAAAGTCCA+TGG 0.586371 7_4:+1466439 Msa1134830:CDS
CGCGCCAGATTGTACCGAAG+AGG 0.592678 7_4:-1466408 None:intergenic
GGCTGGCTTCCCAGTTACAA+AGG 0.593536 7_4:+1466460 Msa1134830:CDS
AACTGTAGTCACAGCTGAAG+AGG 0.597051 7_4:-1466378 None:intergenic
GCATCAGTTGCTCCAAACAA+AGG 0.598394 7_4:-1467167 None:intergenic
TTCGGTACAATCTGGCGCGG+TGG 0.607482 7_4:+1466412 Msa1134830:CDS
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 7_4:-1466456 None:intergenic
AGCTGAAGAGGACATCATAG+AGG 0.638411 7_4:-1466366 None:intergenic
CATAGTATCCTGGTGAACTG+TGG 0.641120 7_4:-1467115 None:intergenic
CTCTTCGGTACAATCTGGCG+CGG 0.651184 7_4:+1466409 Msa1134830:CDS
CAGATTGTACCGAAGAGGCA+CGG 0.652303 7_4:-1466403 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_4:+1466517 Msa1134830:CDS
TGATACGGACAAAGGCATCA+GGG 0.656050 7_4:-1467232 None:intergenic
AGTTCACCAGGATACTATGA+CGG 0.676016 7_4:+1467119 Msa1134830:CDS
GAATCCGATGATACGGACAA+AGG 0.687909 7_4:-1467240 None:intergenic
ACGGACGTTACTGGACAATG+TGG 0.688198 7_4:+1467138 Msa1134830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAAGACCATAATAT+TGG + chr7_4:1466229-1466248 Msa1134830:five_prime_UTR 15.0%
!!! TTCAAATTTTGTTCAATTTT+AGG + chr7_4:1466808-1466827 Msa1134830:intron 15.0%
!!! TAATTTCCTTTTCTTTTTAA+AGG + chr7_4:1467384-1467403 Msa1134830:intron 15.0%
!!! ATATTTCCTTTAAAAAGAAA+AGG - chr7_4:1467393-1467412 None:intergenic 15.0%
!! AATTTATAAGACCATAATAT+TGG + chr7_4:1466229-1466248 Msa1134830:five_prime_UTR 15.0%
!!! TTCAAATTTTGTTCAATTTT+AGG + chr7_4:1466808-1466827 Msa1134830:intron 15.0%
!!! TAATTTCCTTTTCTTTTTAA+AGG + chr7_4:1467384-1467403 Msa1134830:intron 15.0%
!!! ATATTTCCTTTAAAAAGAAA+AGG - chr7_4:1467393-1467412 None:intergenic 15.0%
!!! TATTATGGTCTTATAAATTG+TGG - chr7_4:1466228-1466247 None:intergenic 20.0%
!!! TTTTCCTATTTCCAATATTA+TGG - chr7_4:1466243-1466262 None:intergenic 20.0%
!!! AAATATCTCCATTGTTTTTT+CGG + chr7_4:1467407-1467426 Msa1134830:three_prime_UTR 20.0%
!!! TATTATGGTCTTATAAATTG+TGG - chr7_4:1466228-1466247 None:intergenic 20.0%
!!! TTTTCCTATTTCCAATATTA+TGG - chr7_4:1466243-1466262 None:intergenic 20.0%
!!! AAATATCTCCATTGTTTTTT+CGG + chr7_4:1467407-1467426 Msa1134830:three_prime_UTR 20.0%
! AAGACCATAATATTGGAAAT+AGG + chr7_4:1466236-1466255 Msa1134830:five_prime_UTR 25.0%
! TTTACTAGTGAACTAAGTAA+GGG + chr7_4:1466327-1466346 Msa1134830:five_prime_UTR 25.0%
! TAAGTAAGGGAGAAAAAAAA+TGG + chr7_4:1466340-1466359 Msa1134830:exon 25.0%
! TTAAAGAGTAACATGTCATA+TGG - chr7_4:1466696-1466715 None:intergenic 25.0%
!! ATGTTACTCTTTAATGCTTT+TGG + chr7_4:1466702-1466721 Msa1134830:intron 25.0%
!! AACGTACATGTTACATATTT+TGG + chr7_4:1466753-1466772 Msa1134830:intron 25.0%
!!! TTACATATTTTGGTACTAGA+AGG + chr7_4:1466763-1466782 Msa1134830:intron 25.0%
!!! ATTTTGTTCAATTTTAGGTG+TGG + chr7_4:1466813-1466832 Msa1134830:intron 25.0%
! AAGAAGTAGAATACCTTATA+AGG + chr7_4:1466906-1466925 Msa1134830:intron 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr7_4:1466963-1466982 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTCTACT+TGG + chr7_4:1467059-1467078 Msa1134830:intron 25.0%
! AGAAAAAAATGTTCCTTCAA+TGG - chr7_4:1467346-1467365 None:intergenic 25.0%
! GAAATTACAAACAGAACAAA+TGG - chr7_4:1467371-1467390 None:intergenic 25.0%
!!! GATTTTGAAATGCAAATAGA+TGG + chr7_4:1467442-1467461 Msa1134830:three_prime_UTR 25.0%
! AAGACCATAATATTGGAAAT+AGG + chr7_4:1466236-1466255 Msa1134830:five_prime_UTR 25.0%
! TTTACTAGTGAACTAAGTAA+GGG + chr7_4:1466327-1466346 Msa1134830:five_prime_UTR 25.0%
! TAAGTAAGGGAGAAAAAAAA+TGG + chr7_4:1466340-1466359 Msa1134830:exon 25.0%
! TTAAAGAGTAACATGTCATA+TGG - chr7_4:1466696-1466715 None:intergenic 25.0%
!! ATGTTACTCTTTAATGCTTT+TGG + chr7_4:1466702-1466721 Msa1134830:intron 25.0%
!! AACGTACATGTTACATATTT+TGG + chr7_4:1466753-1466772 Msa1134830:intron 25.0%
!!! TTACATATTTTGGTACTAGA+AGG + chr7_4:1466763-1466782 Msa1134830:intron 25.0%
!!! ATTTTGTTCAATTTTAGGTG+TGG + chr7_4:1466813-1466832 Msa1134830:intron 25.0%
! AAGAAGTAGAATACCTTATA+AGG + chr7_4:1466906-1466925 Msa1134830:intron 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr7_4:1466963-1466982 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTCTACT+TGG + chr7_4:1467059-1467078 Msa1134830:intron 25.0%
! AGAAAAAAATGTTCCTTCAA+TGG - chr7_4:1467346-1467365 None:intergenic 25.0%
! GAAATTACAAACAGAACAAA+TGG - chr7_4:1467371-1467390 None:intergenic 25.0%
!!! GATTTTGAAATGCAAATAGA+TGG + chr7_4:1467442-1467461 Msa1134830:three_prime_UTR 25.0%
! GCTTCATAATACCATTTTGT+TGG - chr7_4:1466201-1466220 None:intergenic 30.0%
CTTTACTAGTGAACTAAGTA+AGG + chr7_4:1466326-1466345 Msa1134830:five_prime_UTR 30.0%
GGTTACTTGAATAGCATTAA+AGG + chr7_4:1466784-1466803 Msa1134830:intron 30.0%
AGTAGAATACCTTATAAGGA+AGG + chr7_4:1466910-1466929 Msa1134830:intron 30.0%
GTAGAATACCTTATAAGGAA+GGG + chr7_4:1466911-1466930 Msa1134830:intron 30.0%
!! ATATAATCGTTGTTTTGTCG+TGG + chr7_4:1467002-1467021 Msa1134830:intron 30.0%
AATTTACTGTTTGCCATTGA+AGG + chr7_4:1467330-1467349 Msa1134830:three_prime_UTR 30.0%
! GCTTCATAATACCATTTTGT+TGG - chr7_4:1466201-1466220 None:intergenic 30.0%
CTTTACTAGTGAACTAAGTA+AGG + chr7_4:1466326-1466345 Msa1134830:five_prime_UTR 30.0%
GGTTACTTGAATAGCATTAA+AGG + chr7_4:1466784-1466803 Msa1134830:intron 30.0%
AGTAGAATACCTTATAAGGA+AGG + chr7_4:1466910-1466929 Msa1134830:intron 30.0%
GTAGAATACCTTATAAGGAA+GGG + chr7_4:1466911-1466930 Msa1134830:intron 30.0%
!! ATATAATCGTTGTTTTGTCG+TGG + chr7_4:1467002-1467021 Msa1134830:intron 30.0%
AATTTACTGTTTGCCATTGA+AGG + chr7_4:1467330-1467349 Msa1134830:three_prime_UTR 30.0%
ATGGACTTTAGTCCAACAAA+TGG - chr7_4:1466440-1466459 None:intergenic 35.0%
! ATTTGTTGGACTAAAGTCCA+TGG + chr7_4:1466439-1466458 Msa1134830:CDS 35.0%
CTTTGTTGACCTTTGTAACT+GGG - chr7_4:1466472-1466491 None:intergenic 35.0%
TCTTTGTTGACCTTTGTAAC+TGG - chr7_4:1466473-1466492 None:intergenic 35.0%
ATTACTTCCATTGCAAGCAA+TGG + chr7_4:1466494-1466513 Msa1134830:CDS 35.0%
CATACAAGGTGATATAAAGC+AGG - chr7_4:1466558-1466577 None:intergenic 35.0%
!! ATCACCTTGTATGACTTGTT+TGG + chr7_4:1466565-1466584 Msa1134830:intron 35.0%
CAATCCAAACAAGTCATACA+AGG - chr7_4:1466572-1466591 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_4:1466842-1466861 None:intergenic 35.0%
AATACCTTATAAGGAAGGGA+TGG + chr7_4:1466915-1466934 Msa1134830:intron 35.0%
ATACCTTATAAGGAAGGGAT+GGG + chr7_4:1466916-1466935 Msa1134830:intron 35.0%
ATGTGGAATTTGCCTTTGTT+TGG + chr7_4:1467155-1467174 Msa1134830:CDS 35.0%
TCTCAAATTTAGTAGACTGC+AGG - chr7_4:1467311-1467330 None:intergenic 35.0%
AGCAAAGACCGAAAAAACAA+TGG - chr7_4:1467418-1467437 None:intergenic 35.0%
!!! GTTTTTTCGGTCTTTGCTTT+CGG + chr7_4:1467420-1467439 Msa1134830:three_prime_UTR 35.0%
ATGGACTTTAGTCCAACAAA+TGG - chr7_4:1466440-1466459 None:intergenic 35.0%
! ATTTGTTGGACTAAAGTCCA+TGG + chr7_4:1466439-1466458 Msa1134830:CDS 35.0%
CTTTGTTGACCTTTGTAACT+GGG - chr7_4:1466472-1466491 None:intergenic 35.0%
TCTTTGTTGACCTTTGTAAC+TGG - chr7_4:1466473-1466492 None:intergenic 35.0%
ATTACTTCCATTGCAAGCAA+TGG + chr7_4:1466494-1466513 Msa1134830:CDS 35.0%
CATACAAGGTGATATAAAGC+AGG - chr7_4:1466558-1466577 None:intergenic 35.0%
!! ATCACCTTGTATGACTTGTT+TGG + chr7_4:1466565-1466584 Msa1134830:intron 35.0%
CAATCCAAACAAGTCATACA+AGG - chr7_4:1466572-1466591 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_4:1466842-1466861 None:intergenic 35.0%
AATACCTTATAAGGAAGGGA+TGG + chr7_4:1466915-1466934 Msa1134830:intron 35.0%
ATACCTTATAAGGAAGGGAT+GGG + chr7_4:1466916-1466935 Msa1134830:intron 35.0%
ATGTGGAATTTGCCTTTGTT+TGG + chr7_4:1467155-1467174 Msa1134830:CDS 35.0%
TCTCAAATTTAGTAGACTGC+AGG - chr7_4:1467311-1467330 None:intergenic 35.0%
AGCAAAGACCGAAAAAACAA+TGG - chr7_4:1467418-1467437 None:intergenic 35.0%
!!! GTTTTTTCGGTCTTTGCTTT+CGG + chr7_4:1467420-1467439 Msa1134830:three_prime_UTR 35.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_4:1466839-1466858 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_4:1466881-1466900 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_4:1466880-1466899 Msa1134830:intron 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_4:1466891-1466910 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_4:1467028-1467047 None:intergenic 40.0%
CTACTTGGTTACTTGCAGAA+AGG + chr7_4:1467074-1467093 Msa1134830:intron 40.0%
AGTTCACCAGGATACTATGA+CGG + chr7_4:1467119-1467138 Msa1134830:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG + chr7_4:1467184-1467203 Msa1134830:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_4:1466839-1466858 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_4:1466881-1466900 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_4:1466880-1466899 Msa1134830:intron 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_4:1466891-1466910 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_4:1467028-1467047 None:intergenic 40.0%
CTACTTGGTTACTTGCAGAA+AGG + chr7_4:1467074-1467093 Msa1134830:intron 40.0%
AGTTCACCAGGATACTATGA+CGG + chr7_4:1467119-1467138 Msa1134830:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG + chr7_4:1467184-1467203 Msa1134830:CDS 40.0%
AGCTGAAGAGGACATCATAG+AGG - chr7_4:1466369-1466388 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_4:1466381-1466400 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr7_4:1466394-1466413 Msa1134830:CDS 45.0%
ACTTCCATTGCAAGCAATGG+TGG + chr7_4:1466497-1466516 Msa1134830:CDS 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr7_4:1466504-1466523 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_4:1466517-1466536 Msa1134830:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr7_4:1466824-1466843 Msa1134830:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_4:1466884-1466903 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_4:1466922-1466941 None:intergenic 45.0%
CATAGTATCCTGGTGAACTG+TGG - chr7_4:1467118-1467137 None:intergenic 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr7_4:1467128-1467147 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr7_4:1467129-1467148 Msa1134830:CDS 45.0%
GCATCAGTTGCTCCAAACAA+AGG - chr7_4:1467170-1467189 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_4:1467235-1467254 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_4:1467236-1467255 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_4:1467236-1467255 Msa1134830:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_4:1467243-1467262 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_4:1467250-1467269 None:intergenic 45.0%
AGCTGAAGAGGACATCATAG+AGG - chr7_4:1466369-1466388 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_4:1466381-1466400 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr7_4:1466394-1466413 Msa1134830:CDS 45.0%
ACTTCCATTGCAAGCAATGG+TGG + chr7_4:1466497-1466516 Msa1134830:CDS 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr7_4:1466504-1466523 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_4:1466517-1466536 Msa1134830:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr7_4:1466824-1466843 Msa1134830:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_4:1466884-1466903 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_4:1466922-1466941 None:intergenic 45.0%
CATAGTATCCTGGTGAACTG+TGG - chr7_4:1467118-1467137 None:intergenic 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr7_4:1467128-1467147 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr7_4:1467129-1467148 Msa1134830:CDS 45.0%
GCATCAGTTGCTCCAAACAA+AGG - chr7_4:1467170-1467189 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_4:1467235-1467254 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_4:1467236-1467255 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_4:1467236-1467255 Msa1134830:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_4:1467243-1467262 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_4:1467250-1467269 None:intergenic 45.0%
CAGATTGTACCGAAGAGGCA+CGG - chr7_4:1466406-1466425 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr7_4:1466443-1466462 Msa1134830:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_4:1466877-1466896 None:intergenic 50.0%
AGACCTCGGTCTCAAATTCC+AGG - chr7_4:1466949-1466968 None:intergenic 50.0%
!! TCGTTGTTTTGTCGTGGCCA+AGG + chr7_4:1467008-1467027 Msa1134830:intron 50.0%
CTGGTGAACTGTGGTTCTCA+CGG - chr7_4:1467109-1467128 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr7_4:1467138-1467157 Msa1134830:CDS 50.0%
CAGATTGTACCGAAGAGGCA+CGG - chr7_4:1466406-1466425 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr7_4:1466443-1466462 Msa1134830:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_4:1466877-1466896 None:intergenic 50.0%
AGACCTCGGTCTCAAATTCC+AGG - chr7_4:1466949-1466968 None:intergenic 50.0%
!! TCGTTGTTTTGTCGTGGCCA+AGG + chr7_4:1467008-1467027 Msa1134830:intron 50.0%
CTGGTGAACTGTGGTTCTCA+CGG - chr7_4:1467109-1467128 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr7_4:1467138-1467157 Msa1134830:CDS 50.0%
CGTGCCTCTTCGGTACAATC+TGG + chr7_4:1466404-1466423 Msa1134830:CDS 55.0%
CTCTTCGGTACAATCTGGCG+CGG + chr7_4:1466409-1466428 Msa1134830:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_4:1466459-1466478 None:intergenic 55.0%
!! GGCTGGCTTCCCAGTTACAA+AGG + chr7_4:1466460-1466479 Msa1134830:CDS 55.0%
CTCGGTCTCAAATTCCAGGC+AGG - chr7_4:1466945-1466964 None:intergenic 55.0%
! CTGCCTGGAATTTGAGACCG+AGG + chr7_4:1466943-1466962 Msa1134830:intron 55.0%
CGTGAGAACCACAGTTCACC+AGG + chr7_4:1467107-1467126 Msa1134830:CDS 55.0%
CGTGCCTCTTCGGTACAATC+TGG + chr7_4:1466404-1466423 Msa1134830:CDS 55.0%
CTCTTCGGTACAATCTGGCG+CGG + chr7_4:1466409-1466428 Msa1134830:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_4:1466459-1466478 None:intergenic 55.0%
!! GGCTGGCTTCCCAGTTACAA+AGG + chr7_4:1466460-1466479 Msa1134830:CDS 55.0%
CTCGGTCTCAAATTCCAGGC+AGG - chr7_4:1466945-1466964 None:intergenic 55.0%
! CTGCCTGGAATTTGAGACCG+AGG + chr7_4:1466943-1466962 Msa1134830:intron 55.0%
CGTGAGAACCACAGTTCACC+AGG + chr7_4:1467107-1467126 Msa1134830:CDS 55.0%
CGCGCCAGATTGTACCGAAG+AGG - chr7_4:1466411-1466430 None:intergenic 60.0%
TTCGGTACAATCTGGCGCGG+TGG + chr7_4:1466412-1466431 Msa1134830:CDS 60.0%
CGCGCCAGATTGTACCGAAG+AGG - chr7_4:1466411-1466430 None:intergenic 60.0%
TTCGGTACAATCTGGCGCGG+TGG + chr7_4:1466412-1466431 Msa1134830:CDS 60.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr7_4:1466425-1466444 Msa1134830:CDS 65.0%
!! GAAGGGATGGGTTGCCTGCC+TGG + chr7_4:1466928-1466947 Msa1134830:intron 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr7_4:1466425-1466444 Msa1134830:CDS 65.0%
!! GAAGGGATGGGTTGCCTGCC+TGG + chr7_4:1466928-1466947 Msa1134830:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 1466195 1467512 1466195 ID=Msa1134830;Name=Msa1134830
chr7_4 mRNA 1466195 1467512 1466195 ID=Msa1134830-mRNA-1;Parent=Msa1134830;Name=Msa1134830-mRNA-1;_AED=0.42;_eAED=0.42;_QI=164|0.5|1|1|0.5|0.33|3|163|136
chr7_4 exon 1466195 1466538 1466195 ID=Msa1134830-mRNA-1:exon:539;Parent=Msa1134830-mRNA-1
chr7_4 exon 1467092 1467378 1467092 ID=Msa1134830-mRNA-1:exon:540;Parent=Msa1134830-mRNA-1
chr7_4 exon 1467406 1467512 1467406 ID=Msa1134830-mRNA-1:exon:541;Parent=Msa1134830-mRNA-1
chr7_4 five_prime_UTR 1466195 1466358 1466195 ID=Msa1134830-mRNA-1:five_prime_utr;Parent=Msa1134830-mRNA-1
chr7_4 CDS 1466359 1466538 1466359 ID=Msa1134830-mRNA-1:cds;Parent=Msa1134830-mRNA-1
chr7_4 CDS 1467092 1467322 1467092 ID=Msa1134830-mRNA-1:cds;Parent=Msa1134830-mRNA-1
chr7_4 three_prime_UTR 1467323 1467378 1467323 ID=Msa1134830-mRNA-1:three_prime_utr;Parent=Msa1134830-mRNA-1
chr7_4 three_prime_UTR 1467406 1467512 1467406 ID=Msa1134830-mRNA-1:three_prime_utr;Parent=Msa1134830-mRNA-1
Gene Sequence

>Msa1134830

ATGGCTTCCTCTATGATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCTGGCGCGGTGGCTCCATTTGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGGTCAACAAAGACATTACTTCCATTGCAAGCAATGGTGGAAGAGTAAACTGCATGCAGAAAGGATTTGTGTACCGTGAGAACCACAGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAATTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCATCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1134830

MASSMMSSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSIASNGGRVNCMQKGFVYRENHSSPGYYDGRYWTMWNLPLFGATDASQVLKELDEAIAAYPDAFVRIIGFDNVHQVQCISFIAHTPAVY*