AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0599670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599670 MtrunA17_Chr4g0024331 99.145 117 1 0 1 117 1 117 2.20e-85 244
Msa0599670 MtrunA17_Chr2g0322741 92.373 118 8 1 1 117 1 118 4.42e-78 225
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599670 AT5G20570.1 90.678 118 10 1 1 117 1 118 5.78e-73 213
Msa0599670 AT5G20570.3 77.941 136 11 2 1 117 1 136 6.46e-68 201
Msa0599670 AT5G20570.2 75.352 142 10 2 1 117 1 142 2.40e-67 199
Msa0599670 AT3G42830.1 81.197 117 20 1 1 117 1 115 7.84e-62 184
Msa0599670 AT3G05870.1 37.363 91 49 2 27 114 2 87 3.41e-16 68.6
Msa0599670 AT3G05870.2 37.363 91 49 2 27 114 2 87 3.41e-16 68.6
Msa0599670 AT3G05870.6 37.363 91 49 2 27 114 2 87 3.41e-16 68.6
Msa0599670 AT3G05870.7 37.349 83 44 2 35 114 1 78 1.66e-15 66.2
Msa0599670 AT3G05870.4 37.349 83 44 2 35 114 13 90 2.25e-15 66.2
Msa0599670 AT3G05870.3 37.349 83 44 2 35 114 13 90 2.25e-15 66.2
Msa0599670 AT3G05870.5 37.349 83 44 2 35 114 13 90 2.25e-15 66.2

Find 44 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTGTTGCTCTCTGGGCTT+GGG 0.153878 4_2:+39722108 Msa0599670:CDS
TAAGATAGCAGTTTGTTTAA+TGG 0.183988 4_2:+39725642 Msa0599670:three_prime_UTR
CTCGAAGCGTTTGGGTTTCT+TGG 0.214290 4_2:-39722071 None:intergenic
GCAGTTTGTTTAATGGATTT+TGG 0.256511 4_2:+39725649 Msa0599670:three_prime_UTR
ACGCTGTTGCTCTCTGGGCT+TGG 0.272937 4_2:+39722107 Msa0599670:CDS
CTTCTTGATCTCGAAGCGTT+TGG 0.274138 4_2:-39722080 None:intergenic
ACTTCCATTGCATTAGTAGA+TGG 0.347117 4_2:+39725358 Msa0599670:CDS
TTCTTGATCTCGAAGCGTTT+GGG 0.354057 4_2:-39722079 None:intergenic
CGAGGAATGCACTGTTGCTT+GGG 0.359954 4_2:+39722412 Msa0599670:CDS
TATTGAGTGCCAAGCTAATC+AGG 0.363148 4_2:+39722376 Msa0599670:CDS
AGTGGAACGCTGTTGCTCTC+TGG 0.369514 4_2:+39722101 Msa0599670:CDS
GTGGAACGCTGTTGCTCTCT+GGG 0.417225 4_2:+39722102 Msa0599670:CDS
CGTTTGGGTTTCTTGGAAGA+AGG 0.427213 4_2:-39722064 None:intergenic
GGACCGGCGGCGCTGCTTGA+AGG 0.434681 4_2:-39722043 None:intergenic
GCGAGGAATGCACTGTTGCT+TGG 0.445853 4_2:+39722411 Msa0599670:CDS
GGCGCTGCTTGAAGGATCGC+CGG 0.461029 4_2:-39722035 None:intergenic
AGAGATCCATGATATGATTA+CGG 0.478324 4_2:-39722257 None:intergenic
GATCCTTCAAGCAGCGCCGC+CGG 0.494333 4_2:+39722040 Msa0599670:CDS
GGGTTTCTTGGAAGAAGGAC+CGG 0.498668 4_2:-39722059 None:intergenic
ACTCGTCAAGTGTGTCCTCT+TGG 0.508929 4_2:+39725387 Msa0599670:CDS
CTGCTTGAAGGATCGCCGGC+GGG 0.510301 4_2:-39722031 None:intergenic
GAGTGGGAGTTTCAGAAATA+CGG 0.526266 4_2:+39725504 Msa0599670:CDS
GCTGTTGCTCTCTGGGCTTG+GGG 0.534795 4_2:+39722109 Msa0599670:CDS
TAGCACTAGCCTGATTAGCT+TGG 0.541707 4_2:-39722385 None:intergenic
TAAAACTTTACATTTGCAGT+CGG 0.554869 4_2:-39725678 None:intergenic
GCTGCTTGAAGGATCGCCGG+CGG 0.557788 4_2:-39722032 None:intergenic
CGGCCACTAGTTCGTTGACA+TGG 0.569410 4_2:+39725524 Msa0599670:exon
TATTTGCCGTAATCATATCA+TGG 0.579015 4_2:+39722251 Msa0599670:CDS
AATTCACACAGCCAGCCAAA+AGG 0.580599 4_2:-39725740 None:intergenic
AGGATCGCCGGCGGGAACCA+TGG 0.584931 4_2:-39722023 None:intergenic
ACTCGATTCCGACGTAACCA+TGG 0.594615 4_2:+39722006 Msa0599670:CDS
TGAGCCATCTACTAATGCAA+TGG 0.598687 4_2:-39725362 None:intergenic
TGCAATGGAAGTGAAAAGCA+TGG 0.613228 4_2:-39725347 None:intergenic
ATGGACAACAAAGACGTCAA+AGG 0.616171 4_2:-39725554 None:intergenic
GACGTAACCATGGTTCCCGC+CGG 0.624258 4_2:+39722016 Msa0599670:CDS
AACGCTTCGAGATCAAGAAG+TGG 0.628822 4_2:+39722083 Msa0599670:CDS
GAGGAATGCACTGTTGCTTG+GGG 0.644497 4_2:+39722413 Msa0599670:CDS
TCAGGCTAGTGCTACTAGCG+AGG 0.648619 4_2:+39722394 Msa0599670:CDS
CCACTAGTTCGTTGACATGG+TGG 0.652923 4_2:+39725527 Msa0599670:exon
CCACCATGTCAACGAACTAG+TGG 0.662747 4_2:-39725527 None:intergenic
TTTCTTGGAAGAAGGACCGG+CGG 0.670628 4_2:-39722056 None:intergenic
TGGTACAGACAACAGTGAGT+GGG 0.670684 4_2:+39725488 Msa0599670:intron
GGCGGGAACCATGGTTACGT+CGG 0.675777 4_2:-39722014 None:intergenic
ATGGTACAGACAACAGTGAG+TGG 0.676744 4_2:+39725487 Msa0599670:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATAACTAAATATTTTAAA+AGG - chr4_2:39722495-39722514 None:intergenic 10.0%
!! TCAGATATAATTTATAAATA+AGG - chr4_2:39723569-39723588 None:intergenic 10.0%
!! TAATTATTCGATATTTGTTT+CGG + chr4_2:39722324-39722343 Msa0599670:intron 15.0%
!! ATAAAAAAATAAGAGGATTT+GGG - chr4_2:39722445-39722464 None:intergenic 15.0%
!! ATTAACGATAAAAAAATAAG+AGG - chr4_2:39722452-39722471 None:intergenic 15.0%
!!! CTTATTTTTTTATCGTTAAT+CGG + chr4_2:39722452-39722471 Msa0599670:intron 15.0%
!!! TATGTTAATCTTCTTTTATT+AGG + chr4_2:39722510-39722529 Msa0599670:intron 15.0%
!!! ATGTTAATCTTCTTTTATTA+GGG + chr4_2:39722511-39722530 Msa0599670:intron 15.0%
!! ATTAAGAGTCATATAAAAAA+TGG - chr4_2:39723247-39723266 None:intergenic 15.0%
!!! ATGAATTTTTTAACATTCAA+GGG - chr4_2:39723292-39723311 None:intergenic 15.0%
!!! AGCAAAAAATTCATTTTTTT+AGG - chr4_2:39723376-39723395 None:intergenic 15.0%
!! ATAAATTATATCTGAATTCA+TGG + chr4_2:39723574-39723593 Msa0599670:intron 15.0%
!! AATAAAAATAGATTACATGA+TGG - chr4_2:39725069-39725088 None:intergenic 15.0%
!! AACAATAATCGTGAAAATTA+GGG - chr4_2:39722171-39722190 None:intergenic 20.0%
!! AAACAATAATCGTGAAAATT+AGG - chr4_2:39722172-39722191 None:intergenic 20.0%
!! GATAAAAAAATAAGAGGATT+TGG - chr4_2:39722446-39722465 None:intergenic 20.0%
!!! ATCTTGTTCAAAATAGTTTT+AGG - chr4_2:39722747-39722766 None:intergenic 20.0%
!! CTTTGTAATTTATTGCATTT+GGG - chr4_2:39722887-39722906 None:intergenic 20.0%
!! TCTATAAACTTATGTAGATT+TGG - chr4_2:39723120-39723139 None:intergenic 20.0%
!!! GATGAATTTTTTAACATTCA+AGG - chr4_2:39723293-39723312 None:intergenic 20.0%
!! TAAATGTAAGTTATTGAGTT+AGG + chr4_2:39723781-39723800 Msa0599670:intron 20.0%
!!! TCAGTTGAATTAGTTTTTTA+TGG + chr4_2:39723805-39723824 Msa0599670:intron 20.0%
!! TTAGACCTAAATACATATTT+CGG - chr4_2:39723842-39723861 None:intergenic 20.0%
!!! ATGAATTTTTTAACACTCAA+GGG - chr4_2:39724004-39724023 None:intergenic 20.0%
!! AGCACTAAATATAAAAAGTA+GGG - chr4_2:39724150-39724169 None:intergenic 20.0%
!! TAGCACTAAATATAAAAAGT+AGG - chr4_2:39724151-39724170 None:intergenic 20.0%
!!! TTTAGTGCTATTTTCTAATT+TGG + chr4_2:39724161-39724180 Msa0599670:intron 20.0%
!! AATTGGAAATAAATTCTTGT+GGG + chr4_2:39724430-39724449 Msa0599670:intron 20.0%
!!! ATAACTTTTAAGATCTTCAT+TGG - chr4_2:39724577-39724596 None:intergenic 20.0%
!! TATATATGAAAAGTAGATAG+TGG + chr4_2:39725020-39725039 Msa0599670:intron 20.0%
!! ATATATGAAAAGTAGATAGT+GGG + chr4_2:39725021-39725040 Msa0599670:intron 20.0%
!!! ATTTTCTTTTAATTGTCTTC+TGG + chr4_2:39725608-39725627 Msa0599670:three_prime_UTR 20.0%
!!! ATTATTGTTTTGATCGCTTT+TGG + chr4_2:39722182-39722201 Msa0599670:intron 25.0%
! ACAAAAATTTCCTGAAAAGT+TGG - chr4_2:39722710-39722729 None:intergenic 25.0%
! GAATAAAAAAACTACCTAGA+CGG - chr4_2:39722801-39722820 None:intergenic 25.0%
! GCTTTGTAATTTATTGCATT+TGG - chr4_2:39722888-39722907 None:intergenic 25.0%
!!! CGAATATAAGATTTTGAGTT+AGG + chr4_2:39723039-39723058 Msa0599670:intron 25.0%
! ACTAGATACTTAGAACTATT+TGG - chr4_2:39723315-39723334 None:intergenic 25.0%
!!! ATTTTTAACTGCTTTGATCT+TGG + chr4_2:39723511-39723530 Msa0599670:intron 25.0%
! AATCTATTGCATTATAGCAA+AGG - chr4_2:39723618-39723637 None:intergenic 25.0%
! CTATAATGCAATAGATTACA+AGG + chr4_2:39723621-39723640 Msa0599670:intron 25.0%
! AACAAAAGCAGGAAAAATTT+GGG - chr4_2:39723665-39723684 None:intergenic 25.0%
! TGTATTTAGGTCTAAACATA+TGG + chr4_2:39723847-39723866 Msa0599670:intron 25.0%
!!! GATGAATTTTTTAACACTCA+AGG - chr4_2:39724005-39724024 None:intergenic 25.0%
! ACTAGTTGATCTTAATCTTA+TGG + chr4_2:39724233-39724252 Msa0599670:intron 25.0%
!! AATTTCAAGTAAAACTAAGC+CGG + chr4_2:39724327-39724346 Msa0599670:intron 25.0%
! GATATGTTACAATATTTCCT+CGG - chr4_2:39724372-39724391 None:intergenic 25.0%
! AAGCAGTTTCATATATCAAT+TGG + chr4_2:39724413-39724432 Msa0599670:intron 25.0%
! CAATTGGAAATAAATTCTTG+TGG + chr4_2:39724429-39724448 Msa0599670:intron 25.0%
! ATTGGAAATAAATTCTTGTG+GGG + chr4_2:39724431-39724450 Msa0599670:intron 25.0%
!! TTAGAGCACTATATATGTAA+TGG - chr4_2:39724459-39724478 None:intergenic 25.0%
! AAAATAGATTACATGATGGT+GGG - chr4_2:39725065-39725084 None:intergenic 25.0%
! AAAAATAGATTACATGATGG+TGG - chr4_2:39725066-39725085 None:intergenic 25.0%
! TTGAGATCAATAAGCATATT+CGG - chr4_2:39725243-39725262 None:intergenic 25.0%
!!! TACTGTAATTTTTTCTGTGA+TGG + chr4_2:39725468-39725487 Msa0599670:intron 25.0%
!! TAAGATAGCAGTTTGTTTAA+TGG + chr4_2:39725642-39725661 Msa0599670:three_prime_UTR 25.0%
! TAAAACTTTACATTTGCAGT+CGG - chr4_2:39725681-39725700 None:intergenic 25.0%
GAAAATTAGGGTTTACGATT+GGG - chr4_2:39722159-39722178 None:intergenic 30.0%
TGAAAATTAGGGTTTACGAT+TGG - chr4_2:39722160-39722179 None:intergenic 30.0%
TATTTGCCGTAATCATATCA+TGG + chr4_2:39722251-39722270 Msa0599670:CDS 30.0%
AGAGATCCATGATATGATTA+CGG - chr4_2:39722260-39722279 None:intergenic 30.0%
ATTCGATATTTGTTTCGGTT+TGG + chr4_2:39722329-39722348 Msa0599670:intron 30.0%
! TAGGTCAAATTCTAGGAATA+AGG + chr4_2:39722541-39722560 Msa0599670:intron 30.0%
!! ATAGGGTATTGTGTGTAATT+TGG - chr4_2:39722652-39722671 None:intergenic 30.0%
!! ACAATACCCTATGTTTTTAC+CGG + chr4_2:39722660-39722679 Msa0599670:intron 30.0%
!! GAACAAGATTGCTTTGATTT+TGG + chr4_2:39722758-39722777 Msa0599670:intron 30.0%
TGCAATAAATTACAAAGCCA+AGG + chr4_2:39722890-39722909 Msa0599670:intron 30.0%
! ATTGGTCTGTGTAAAATTGT+TGG + chr4_2:39722957-39722976 Msa0599670:intron 30.0%
!!! ATTTTGAGTTAGGCTTAGTT+TGG + chr4_2:39723049-39723068 Msa0599670:intron 30.0%
TGTGATAGAGAAGTTAGAAA+AGG + chr4_2:39723169-39723188 Msa0599670:intron 30.0%
!! TTTTGCTTTTAAGTGACTAG+AGG + chr4_2:39723389-39723408 Msa0599670:intron 30.0%
!! TTTGCTTTTAAGTGACTAGA+GGG + chr4_2:39723390-39723409 Msa0599670:intron 30.0%
ATGTTAATGTGTCATCTCTT+AGG + chr4_2:39723424-39723443 Msa0599670:intron 30.0%
TGTTAATGTGTCATCTCTTA+GGG + chr4_2:39723425-39723444 Msa0599670:intron 30.0%
!! TAAGGTCAAATTCTAGGATA+AGG + chr4_2:39723455-39723474 Msa0599670:intron 30.0%
TGCAATAGATTACAAGGAAA+AGG + chr4_2:39723627-39723646 Msa0599670:intron 30.0%
GAACAAAAGCAGGAAAAATT+TGG - chr4_2:39723666-39723685 None:intergenic 30.0%
AACCTACTAACAATCTTACA+TGG - chr4_2:39723702-39723721 None:intergenic 30.0%
ATGTAAGATTGTTAGTAGGT+TGG + chr4_2:39723701-39723720 Msa0599670:intron 30.0%
TTCCACCGAAATATGTATTT+AGG + chr4_2:39723834-39723853 Msa0599670:intron 30.0%
AAACATATGGATAAGTTTCC+AGG + chr4_2:39723860-39723879 Msa0599670:intron 30.0%
! TAGTAAAGAAGCTTCTGAAA+AGG + chr4_2:39723898-39723917 Msa0599670:intron 30.0%
CAAAATACATAGAGCTAGTT+AGG - chr4_2:39724027-39724046 None:intergenic 30.0%
TGTTCAATTCCTTAAACTGA+AGG + chr4_2:39724121-39724140 Msa0599670:intron 30.0%
GTTCAATTCCTTAAACTGAA+GGG + chr4_2:39724122-39724141 Msa0599670:intron 30.0%
!!! GGCTTAGTTTTACTTGAAAT+TGG - chr4_2:39724328-39724347 None:intergenic 30.0%
ACTGCTTAAAGTTTAACTCA+TGG - chr4_2:39724400-39724419 None:intergenic 30.0%
TTATAATCACTCCCTTTATG+GGG - chr4_2:39724635-39724654 None:intergenic 30.0%
CTTATAATCACTCCCTTTAT+GGG - chr4_2:39724636-39724655 None:intergenic 30.0%
ACTTATAATCACTCCCTTTA+TGG - chr4_2:39724637-39724656 None:intergenic 30.0%
AACTTGTACTGTCTCATTAA+GGG - chr4_2:39724845-39724864 None:intergenic 30.0%
AAATGTCAACTGTGAATGAT+GGG - chr4_2:39724887-39724906 None:intergenic 30.0%
ACAAGTTTGAAGATTCCATT+TGG - chr4_2:39725126-39725145 None:intergenic 30.0%
GCTTATTGATCTCAATATGA+AGG + chr4_2:39725248-39725267 Msa0599670:intron 30.0%
! TTATTTAGTTTCTGCTTACG+CGG + chr4_2:39725272-39725291 Msa0599670:intron 30.0%
CTCTGTGTATATCTTATACA+GGG + chr4_2:39725316-39725335 Msa0599670:intron 30.0%
TCTGTGTATATCTTATACAG+GGG + chr4_2:39725317-39725336 Msa0599670:intron 30.0%
! TAGATTTTCAAAAGCTAGGA+TGG - chr4_2:39725576-39725595 None:intergenic 30.0%
!!! GCAGTTTGTTTAATGGATTT+TGG + chr4_2:39725649-39725668 Msa0599670:three_prime_UTR 30.0%
! GCATTTCATTTTCTACCTTT+TGG + chr4_2:39725725-39725744 Msa0599670:three_prime_UTR 30.0%
!! TGTTTCGGTTTGGATTGATT+CGG + chr4_2:39722339-39722358 Msa0599670:intron 35.0%
!!! GTTTGGATTGATTCGGATTT+TGG + chr4_2:39722346-39722365 Msa0599670:intron 35.0%
!!! TTGATTCGGATTTTGGTTGT+AGG + chr4_2:39722353-39722372 Msa0599670:intron 35.0%
! CTTTTATTAGGGTTGAAGCT+AGG + chr4_2:39722522-39722541 Msa0599670:intron 35.0%
TTGAAGCTAGGTCAAATTCT+AGG + chr4_2:39722534-39722553 Msa0599670:intron 35.0%
GTTATGCCGGTAAAAACATA+GGG - chr4_2:39722669-39722688 None:intergenic 35.0%
TAAAAAAACTACCTAGACGG+TGG - chr4_2:39722798-39722817 None:intergenic 35.0%
TGTGTAGTTCAAACATTCCT+TGG - chr4_2:39722910-39722929 None:intergenic 35.0%
ATACTACACAAACAGTACCA+GGG - chr4_2:39722939-39722958 None:intergenic 35.0%
AATACTACACAAACAGTACC+AGG - chr4_2:39722940-39722959 None:intergenic 35.0%
TGGTACTGTTTGTGTAGTAT+TGG + chr4_2:39722939-39722958 Msa0599670:intron 35.0%
GTCTGTGTAAAATTGTTGGT+GGG + chr4_2:39722961-39722980 Msa0599670:intron 35.0%
GGAAGCTTCTTAAAAGTTTG+TGG + chr4_2:39723190-39723209 Msa0599670:intron 35.0%
TGAAGCTAAGGTCAAATTCT+AGG + chr4_2:39723449-39723468 Msa0599670:intron 35.0%
AAAAGCAGGAAAAATTTGGG+TGG - chr4_2:39723662-39723681 None:intergenic 35.0%
ATCATAGCATGAACAAAAGC+AGG - chr4_2:39723676-39723695 None:intergenic 35.0%
TGCCATGTAAGATTGTTAGT+AGG + chr4_2:39723697-39723716 Msa0599670:intron 35.0%
! TAAGATTGTTAGTAGGTTGG+TGG + chr4_2:39723704-39723723 Msa0599670:intron 35.0%
TATGATCTTGTGTGAGACAA+AGG + chr4_2:39723741-39723760 Msa0599670:intron 35.0%
GACCTAAATACATATTTCGG+TGG - chr4_2:39723839-39723858 None:intergenic 35.0%
ATATGGATAAGTTTCCAGGT+AGG + chr4_2:39723864-39723883 Msa0599670:intron 35.0%
TATGGATAAGTTTCCAGGTA+GGG + chr4_2:39723865-39723884 Msa0599670:intron 35.0%
! AGAAGCTTCTGAAAAGGTTT+AGG + chr4_2:39723904-39723923 Msa0599670:intron 35.0%
AGTGTCTTTCATCATGTTAG+AGG - chr4_2:39724065-39724084 None:intergenic 35.0%
GGAATTGAACAGACAAAAGA+AGG - chr4_2:39724112-39724131 None:intergenic 35.0%
ATTGGTATATTCTGCACGAT+TGG - chr4_2:39724310-39724329 None:intergenic 35.0%
GCTTAAAGTTTAACTCATGG+TGG - chr4_2:39724397-39724416 None:intergenic 35.0%
TTTACAATCCTCCCCATAAA+GGG + chr4_2:39724621-39724640 Msa0599670:intron 35.0%
AAGGGAGTGATTATAAGTTG+TGG + chr4_2:39724639-39724658 Msa0599670:intron 35.0%
AGGGAGTGATTATAAGTTGT+GGG + chr4_2:39724640-39724659 Msa0599670:intron 35.0%
ATCCCTTCCTCAATATGAAA+CGG - chr4_2:39724696-39724715 None:intergenic 35.0%
ACTTGTACTGTCTCATTAAG+GGG - chr4_2:39724844-39724863 None:intergenic 35.0%
CAACTTGTACTGTCTCATTA+AGG - chr4_2:39724846-39724865 None:intergenic 35.0%
! AATGATGGGAAATGTCCAAA+GGG - chr4_2:39724873-39724892 None:intergenic 35.0%
CAAATGTCAACTGTGAATGA+TGG - chr4_2:39724888-39724907 None:intergenic 35.0%
CATCATTCACAGTTGACATT+TGG + chr4_2:39724886-39724905 Msa0599670:intron 35.0%
ATTCACAGTTGACATTTGGT+GGG + chr4_2:39724890-39724909 Msa0599670:intron 35.0%
! GTACTGTGCTATTACAGTTT+AGG + chr4_2:39725176-39725195 Msa0599670:intron 35.0%
! TATTTAGTTTCTGCTTACGC+GGG + chr4_2:39725273-39725292 Msa0599670:intron 35.0%
GCTCTGTGTATATCTTATAC+AGG + chr4_2:39725315-39725334 Msa0599670:intron 35.0%
ACTTCCATTGCATTAGTAGA+TGG + chr4_2:39725358-39725377 Msa0599670:CDS 35.0%
AAGAAGTTATGCATACCAAG+AGG - chr4_2:39725405-39725424 None:intergenic 35.0%
! GCTGTAGATTTTCAAAAGCT+AGG - chr4_2:39725580-39725599 None:intergenic 35.0%
! TTCATTTTCTACCTTTTGGC+TGG + chr4_2:39725729-39725748 Msa0599670:three_prime_UTR 35.0%
! TTCTTGATCTCGAAGCGTTT+GGG - chr4_2:39722082-39722101 None:intergenic 40.0%
TATTGAGTGCCAAGCTAATC+AGG + chr4_2:39722376-39722395 Msa0599670:CDS 40.0%
AGTTTATGTCTCTACGACGA+TGG + chr4_2:39722601-39722620 Msa0599670:intron 40.0%
GGTTATGCCGGTAAAAACAT+AGG - chr4_2:39722670-39722689 None:intergenic 40.0%
CAATTAACTAGGGGTTATGC+CGG - chr4_2:39722682-39722701 None:intergenic 40.0%
TTGGTCGACCAATTAACTAG+GGG - chr4_2:39722691-39722710 None:intergenic 40.0%
GTTGGTCGACCAATTAACTA+GGG - chr4_2:39722692-39722711 None:intergenic 40.0%
AGTTGGTCGACCAATTAACT+AGG - chr4_2:39722693-39722712 None:intergenic 40.0%
! AATTGGTCGACCAACTTTTC+AGG + chr4_2:39722697-39722716 Msa0599670:intron 40.0%
!! TGTAAGTTGATCCTCCATAG+TGG + chr4_2:39722831-39722850 Msa0599670:intron 40.0%
TGAACTACACAAATTCTCCC+TGG + chr4_2:39722919-39722938 Msa0599670:intron 40.0%
GGTCTGTGTAAAATTGTTGG+TGG + chr4_2:39722960-39722979 Msa0599670:intron 40.0%
TCTTGCGTGATTCAAACTTG+TGG + chr4_2:39723004-39723023 Msa0599670:intron 40.0%
ATCTCTTAGGGTTGAAGCTA+AGG + chr4_2:39723437-39723456 Msa0599670:intron 40.0%
CAAGGAAATATCCACTGTCT+AGG + chr4_2:39723537-39723556 Msa0599670:intron 40.0%
TAAGGATACTACCTAGACAG+TGG - chr4_2:39723551-39723570 None:intergenic 40.0%
ATAAGTTTCCAGGTAGGGAT+AGG + chr4_2:39723870-39723889 Msa0599670:intron 40.0%
TAAGTTTCCAGGTAGGGATA+GGG + chr4_2:39723871-39723890 Msa0599670:intron 40.0%
! GTTGATGTGGCTTTTTGTGT+TGG + chr4_2:39724203-39724222 Msa0599670:intron 40.0%
ACGAAAACAACCTACCCTAT+GGG - chr4_2:39724542-39724561 None:intergenic 40.0%
AACGAAAACAACCTACCCTA+TGG - chr4_2:39724543-39724562 None:intergenic 40.0%
!! GATCTTCATTGGCTTCAAAG+TGG - chr4_2:39724566-39724585 None:intergenic 40.0%
TGTAAAGGAAGGAAGTGAAC+TGG - chr4_2:39724607-39724626 None:intergenic 40.0%
CTTTATGGGGAGGATTGTAA+AGG - chr4_2:39724622-39724641 None:intergenic 40.0%
CTTTACAATCCTCCCCATAA+AGG + chr4_2:39724620-39724639 Msa0599670:intron 40.0%
ATTATAAGTTGTGGGTCTCG+AGG + chr4_2:39724648-39724667 Msa0599670:intron 40.0%
TCCCGTTTCATATTGAGGAA+GGG + chr4_2:39724691-39724710 Msa0599670:intron 40.0%
TCCCTTCCTCAATATGAAAC+GGG - chr4_2:39724695-39724714 None:intergenic 40.0%
TACAAGGGAAAGGAAAGGAA+AGG - chr4_2:39724739-39724758 None:intergenic 40.0%
CATTCTACAAGGGAAAGGAA+AGG - chr4_2:39724744-39724763 None:intergenic 40.0%
CTTTCCTTTCCCTTGTAGAA+TGG + chr4_2:39724742-39724761 Msa0599670:intron 40.0%
! TCTTGTGTGCCATTCTACAA+GGG - chr4_2:39724754-39724773 None:intergenic 40.0%
GAACTAGGAGCAGTACAAAT+GGG - chr4_2:39724802-39724821 None:intergenic 40.0%
TGAACTAGGAGCAGTACAAA+TGG - chr4_2:39724803-39724822 None:intergenic 40.0%
TTGTACTGCTCCTAGTTCAT+AGG + chr4_2:39724804-39724823 Msa0599670:intron 40.0%
CTATCAAGGACCTATGAACT+AGG - chr4_2:39724817-39724836 None:intergenic 40.0%
CTAGTTCATAGGTCCTTGAT+AGG + chr4_2:39724815-39724834 Msa0599670:intron 40.0%
CATTAAGGGGTTACCTATCA+AGG - chr4_2:39724831-39724850 None:intergenic 40.0%
! ATGATGGGAAATGTCCAAAG+GGG - chr4_2:39724872-39724891 None:intergenic 40.0%
! GAATGATGGGAAATGTCCAA+AGG - chr4_2:39724874-39724893 None:intergenic 40.0%
CATTCACAGTTGACATTTGG+TGG + chr4_2:39724889-39724908 Msa0599670:intron 40.0%
! TTCACAGTTGACATTTGGTG+GGG + chr4_2:39724891-39724910 Msa0599670:intron 40.0%
AAAACAAGGGAGCTGAAAGA+AGG + chr4_2:39724921-39724940 Msa0599670:intron 40.0%
ATTTCTGTTGTGAAAGGGAG+AGG - chr4_2:39724980-39724999 None:intergenic 40.0%
TCTCCCTTTCACAACAGAAA+TGG + chr4_2:39724979-39724998 Msa0599670:intron 40.0%
CCTCCATTTCTGTTGTGAAA+GGG - chr4_2:39724985-39725004 None:intergenic 40.0%
TCCTCCATTTCTGTTGTGAA+AGG - chr4_2:39724986-39725005 None:intergenic 40.0%
ACAGAAATGGAGGACAACAT+TGG + chr4_2:39724992-39725011 Msa0599670:intron 40.0%
!! TTTGTGTCTAGCTCTCCAAA+TGG + chr4_2:39725108-39725127 Msa0599670:intron 40.0%
TGCAATGGAAGTGAAAAGCA+TGG - chr4_2:39725350-39725369 None:intergenic 40.0%
TGAGCCATCTACTAATGCAA+TGG - chr4_2:39725365-39725384 None:intergenic 40.0%
CCATGTGCTTTGACTAGTAA+AGG - chr4_2:39725436-39725455 None:intergenic 40.0%
CCTTTACTAGTCAAAGCACA+TGG + chr4_2:39725433-39725452 Msa0599670:intron 40.0%
GAGTGGGAGTTTCAGAAATA+CGG + chr4_2:39725504-39725523 Msa0599670:CDS 40.0%
ATGGACAACAAAGACGTCAA+AGG - chr4_2:39725557-39725576 None:intergenic 40.0%
! CGTTTGGGTTTCTTGGAAGA+AGG - chr4_2:39722067-39722086 None:intergenic 45.0%
! CTTCTTGATCTCGAAGCGTT+TGG - chr4_2:39722083-39722102 None:intergenic 45.0%
AACGCTTCGAGATCAAGAAG+TGG + chr4_2:39722083-39722102 Msa0599670:CDS 45.0%
! TAGCACTAGCCTGATTAGCT+TGG - chr4_2:39722388-39722407 None:intergenic 45.0%
CGGCATAACCCCTAGTTAAT+TGG + chr4_2:39722680-39722699 Msa0599670:intron 45.0%
CAAGCAAATATCCACCGTCT+AGG + chr4_2:39722784-39722803 Msa0599670:intron 45.0%
TAATCGTGACACAGCCACTA+TGG - chr4_2:39722848-39722867 None:intergenic 45.0%
TCTTGTGTGAGACAAAGGCA+TGG + chr4_2:39723746-39723765 Msa0599670:intron 45.0%
GTAGGGTTCCCTTCAGTTTA+AGG - chr4_2:39724133-39724152 None:intergenic 45.0%
!! GCCAATGCTTCAAGTTGATG+TGG + chr4_2:39724190-39724209 Msa0599670:intron 45.0%
GCCACATCAACTTGAAGCAT+TGG - chr4_2:39724194-39724213 None:intergenic 45.0%
CGAAGAGTTCGGATTGTATC+CGG - chr4_2:39724349-39724368 None:intergenic 45.0%
TATTTCCTCGGCGAAGAGTT+CGG - chr4_2:39724360-39724379 None:intergenic 45.0%
AATAGCCTAAGCAGACCCAT+AGG + chr4_2:39724524-39724543 Msa0599670:intron 45.0%
ATAGCCTAAGCAGACCCATA+GGG + chr4_2:39724525-39724544 Msa0599670:intron 45.0%
ATGGGGAGGATTGTAAAGGA+AGG - chr4_2:39724618-39724637 None:intergenic 45.0%
TAATCACTCCCTTTATGGGG+AGG - chr4_2:39724632-39724651 None:intergenic 45.0%
ACCTCTCCCGTTTCATATTG+AGG + chr4_2:39724686-39724705 Msa0599670:intron 45.0%
TCCTCAATATGAAACGGGAG+AGG - chr4_2:39724690-39724709 None:intergenic 45.0%
CTCCCGTTTCATATTGAGGA+AGG + chr4_2:39724690-39724709 Msa0599670:intron 45.0%
! TGTGCCATTCTACAAGGGAA+AGG - chr4_2:39724749-39724768 None:intergenic 45.0%
! CTCTTGTGTGCCATTCTACA+AGG - chr4_2:39724755-39724774 None:intergenic 45.0%
! GTGGGGCACTCATAAAACAA+GGG + chr4_2:39724908-39724927 Msa0599670:intron 45.0%
CTGAAAGAAGGCAATCAAGC+TGG + chr4_2:39724933-39724952 Msa0599670:intron 45.0%
CCCTTTCACAACAGAAATGG+AGG + chr4_2:39724982-39725001 Msa0599670:intron 45.0%
! TAGTGGGTCCTATTACCAAG+TGG + chr4_2:39725037-39725056 Msa0599670:intron 45.0%
AGTGGGTCCTATTACCAAGT+GGG + chr4_2:39725038-39725057 Msa0599670:intron 45.0%
ATGGTACAGACAACAGTGAG+TGG + chr4_2:39725487-39725506 Msa0599670:intron 45.0%
TGGTACAGACAACAGTGAGT+GGG + chr4_2:39725488-39725507 Msa0599670:intron 45.0%
AATTCACACAGCCAGCCAAA+AGG - chr4_2:39725743-39725762 None:intergenic 45.0%
ACTCGATTCCGACGTAACCA+TGG + chr4_2:39722006-39722025 Msa0599670:CDS 50.0%
TTTCTTGGAAGAAGGACCGG+CGG - chr4_2:39722059-39722078 None:intergenic 50.0%
GGGTTTCTTGGAAGAAGGAC+CGG - chr4_2:39722062-39722081 None:intergenic 50.0%
! CTCGAAGCGTTTGGGTTTCT+TGG - chr4_2:39722074-39722093 None:intergenic 50.0%
! CGAGGAATGCACTGTTGCTT+GGG + chr4_2:39722412-39722431 Msa0599670:CDS 50.0%
! GAGGAATGCACTGTTGCTTG+GGG + chr4_2:39722413-39722432 Msa0599670:CDS 50.0%
CTGCTTTGATCTTGGCTGCA+AGG + chr4_2:39723519-39723538 Msa0599670:intron 50.0%
CTAACTTCCCTATCCCTACC+TGG - chr4_2:39723881-39723900 None:intergenic 50.0%
AGTACAAGTTGCCACCCCTT+TGG + chr4_2:39724855-39724874 Msa0599670:intron 50.0%
ATGGGAAATGTCCAAAGGGG+TGG - chr4_2:39724869-39724888 None:intergenic 50.0%
! GGTGGGGCACTCATAAAACA+AGG + chr4_2:39724907-39724926 Msa0599670:intron 50.0%
AGGGAGAGGATTCAAACTCG+TGG - chr4_2:39724966-39724985 None:intergenic 50.0%
ACTCGTCAAGTGTGTCCTCT+TGG + chr4_2:39725387-39725406 Msa0599670:CDS 50.0%
CCACCATGTCAACGAACTAG+TGG - chr4_2:39725530-39725549 None:intergenic 50.0%
CCACTAGTTCGTTGACATGG+TGG + chr4_2:39725527-39725546 Msa0599670:exon 50.0%
AGTGGAACGCTGTTGCTCTC+TGG + chr4_2:39722101-39722120 Msa0599670:CDS 55.0%
GTGGAACGCTGTTGCTCTCT+GGG + chr4_2:39722102-39722121 Msa0599670:CDS 55.0%
! TCAGGCTAGTGCTACTAGCG+AGG + chr4_2:39722394-39722413 Msa0599670:CDS 55.0%
GCGAGGAATGCACTGTTGCT+TGG + chr4_2:39722411-39722430 Msa0599670:CDS 55.0%
TCGTGACACAGCCACTATGG+AGG - chr4_2:39722845-39722864 None:intergenic 55.0%
ACAATCCGAACTCTTCGCCG+AGG + chr4_2:39724352-39724371 Msa0599670:intron 55.0%
CCTACCCTATGGGTCTGCTT+AGG - chr4_2:39724532-39724551 None:intergenic 55.0%
CCTAAGCAGACCCATAGGGT+AGG + chr4_2:39724529-39724548 Msa0599670:intron 55.0%
! GGTGGGACCCACTTGGTAAT+AGG - chr4_2:39725048-39725067 None:intergenic 55.0%
!! ACATGATGGTGGGACCCACT+TGG - chr4_2:39725055-39725074 None:intergenic 55.0%
CGGCCACTAGTTCGTTGACA+TGG + chr4_2:39725524-39725543 Msa0599670:exon 55.0%
GGCGGGAACCATGGTTACGT+CGG - chr4_2:39722017-39722036 None:intergenic 60.0%
GACGTAACCATGGTTCCCGC+CGG + chr4_2:39722016-39722035 Msa0599670:CDS 60.0%
ACGCTGTTGCTCTCTGGGCT+TGG + chr4_2:39722107-39722126 Msa0599670:CDS 60.0%
CGCTGTTGCTCTCTGGGCTT+GGG + chr4_2:39722108-39722127 Msa0599670:CDS 60.0%
GCTGTTGCTCTCTGGGCTTG+GGG + chr4_2:39722109-39722128 Msa0599670:CDS 60.0%
CTGCTTGAAGGATCGCCGGC+GGG - chr4_2:39722034-39722053 None:intergenic 65.0%
GCTGCTTGAAGGATCGCCGG+CGG - chr4_2:39722035-39722054 None:intergenic 65.0%
GGCGCTGCTTGAAGGATCGC+CGG - chr4_2:39722038-39722057 None:intergenic 65.0%
GATCCTTCAAGCAGCGCCGC+CGG + chr4_2:39722040-39722059 Msa0599670:CDS 65.0%
AGGATCGCCGGCGGGAACCA+TGG - chr4_2:39722026-39722045 None:intergenic 70.0%
GGACCGGCGGCGCTGCTTGA+AGG - chr4_2:39722046-39722065 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 39721935 39725783 39721935 ID=Msa0599670;Name=Msa0599670
chr4_2 mRNA 39721935 39725783 39721935 ID=Msa0599670-mRNA-1;Parent=Msa0599670;Name=Msa0599670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=63|1|1|1|0.75|1|5|250|117
chr4_2 exon 39721935 39722130 39721935 ID=Msa0599670-mRNA-1:exon:8661;Parent=Msa0599670-mRNA-1
chr4_2 exon 39722229 39722279 39722229 ID=Msa0599670-mRNA-1:exon:8662;Parent=Msa0599670-mRNA-1
chr4_2 exon 39722375 39722434 39722375 ID=Msa0599670-mRNA-1:exon:8663;Parent=Msa0599670-mRNA-1
chr4_2 exon 39725337 39725408 39725337 ID=Msa0599670-mRNA-1:exon:8664;Parent=Msa0599670-mRNA-1
chr4_2 exon 39725496 39725783 39725496 ID=Msa0599670-mRNA-1:exon:8665;Parent=Msa0599670-mRNA-1
chr4_2 five_prime_UTR 39721935 39721997 39721935 ID=Msa0599670-mRNA-1:five_prime_utr;Parent=Msa0599670-mRNA-1
chr4_2 CDS 39721998 39722130 39721998 ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1
chr4_2 CDS 39722229 39722279 39722229 ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1
chr4_2 CDS 39722375 39722434 39722375 ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1
chr4_2 CDS 39725337 39725408 39725337 ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1
chr4_2 CDS 39725496 39725533 39725496 ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1
chr4_2 three_prime_UTR 39725534 39725783 39725534 ID=Msa0599670-mRNA-1:three_prime_utr;Parent=Msa0599670-mRNA-1
Gene Sequence

>Msa0599670

ATGTCGACACTCGATTCCGACGTAACCATGGTTCCCGCCGGCGATCCTTCAAGCAGCGCCGCCGGTCCTTCTTCCAAGAAACCCAAACGCTTCGAGATCAAGAAGTGGAACGCTGTTGCTCTCTGGGCTTGGGATATCGTTGTTGATAACTGTGCTATTTGCCGTAATCATATCATGGATCTCTGTATTGAGTGCCAAGCTAATCAGGCTAGTGCTACTAGCGAGGAATGCACTGTTGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTAGATGGCTCAAGACTCGTCAAGTGTGTCCTCTTGACAACAGTGAGTGGGAGTTTCAGAAATACGGCCACTAG

Protein sequence

>Msa0599670

MSTLDSDVTMVPAGDPSSSAAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*