Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0599670 | XP_013455640.1 | 99.145 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 2.39e-81 | 244 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0599670 | sp|Q940X7|RBX1A_ARATH | 90.678 | 118 | 10 | 1 | 1 | 117 | 1 | 118 | 5.69e-72 | 213 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0371880 | Msa0599670 | 0.807309 | 5.382173e-50 | -8.615850e-47 |
Msa0544540 | Msa0599670 | 0.846957 | 1.566754e-59 | -8.615850e-47 |
Msa0599670 | Msa0690770 | 0.826980 | 2.014359e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0599670 | MtrunA17_Chr4g0024331 | 99.145 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 2.20e-85 | 244 |
Msa0599670 | MtrunA17_Chr2g0322741 | 92.373 | 118 | 8 | 1 | 1 | 117 | 1 | 118 | 4.42e-78 | 225 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0599670 | AT5G20570.1 | 90.678 | 118 | 10 | 1 | 1 | 117 | 1 | 118 | 5.78e-73 | 213 |
Msa0599670 | AT5G20570.3 | 77.941 | 136 | 11 | 2 | 1 | 117 | 1 | 136 | 6.46e-68 | 201 |
Msa0599670 | AT5G20570.2 | 75.352 | 142 | 10 | 2 | 1 | 117 | 1 | 142 | 2.40e-67 | 199 |
Msa0599670 | AT3G42830.1 | 81.197 | 117 | 20 | 1 | 1 | 117 | 1 | 115 | 7.84e-62 | 184 |
Msa0599670 | AT3G05870.1 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 3.41e-16 | 68.6 |
Msa0599670 | AT3G05870.2 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 3.41e-16 | 68.6 |
Msa0599670 | AT3G05870.6 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 3.41e-16 | 68.6 |
Msa0599670 | AT3G05870.7 | 37.349 | 83 | 44 | 2 | 35 | 114 | 1 | 78 | 1.66e-15 | 66.2 |
Msa0599670 | AT3G05870.4 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 2.25e-15 | 66.2 |
Msa0599670 | AT3G05870.3 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 2.25e-15 | 66.2 |
Msa0599670 | AT3G05870.5 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 2.25e-15 | 66.2 |
Find 44 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTGTTGCTCTCTGGGCTT+GGG | 0.153878 | 4_2:+39722108 | Msa0599670:CDS |
TAAGATAGCAGTTTGTTTAA+TGG | 0.183988 | 4_2:+39725642 | Msa0599670:three_prime_UTR |
CTCGAAGCGTTTGGGTTTCT+TGG | 0.214290 | 4_2:-39722071 | None:intergenic |
GCAGTTTGTTTAATGGATTT+TGG | 0.256511 | 4_2:+39725649 | Msa0599670:three_prime_UTR |
ACGCTGTTGCTCTCTGGGCT+TGG | 0.272937 | 4_2:+39722107 | Msa0599670:CDS |
CTTCTTGATCTCGAAGCGTT+TGG | 0.274138 | 4_2:-39722080 | None:intergenic |
ACTTCCATTGCATTAGTAGA+TGG | 0.347117 | 4_2:+39725358 | Msa0599670:CDS |
TTCTTGATCTCGAAGCGTTT+GGG | 0.354057 | 4_2:-39722079 | None:intergenic |
CGAGGAATGCACTGTTGCTT+GGG | 0.359954 | 4_2:+39722412 | Msa0599670:CDS |
TATTGAGTGCCAAGCTAATC+AGG | 0.363148 | 4_2:+39722376 | Msa0599670:CDS |
AGTGGAACGCTGTTGCTCTC+TGG | 0.369514 | 4_2:+39722101 | Msa0599670:CDS |
GTGGAACGCTGTTGCTCTCT+GGG | 0.417225 | 4_2:+39722102 | Msa0599670:CDS |
CGTTTGGGTTTCTTGGAAGA+AGG | 0.427213 | 4_2:-39722064 | None:intergenic |
GGACCGGCGGCGCTGCTTGA+AGG | 0.434681 | 4_2:-39722043 | None:intergenic |
GCGAGGAATGCACTGTTGCT+TGG | 0.445853 | 4_2:+39722411 | Msa0599670:CDS |
GGCGCTGCTTGAAGGATCGC+CGG | 0.461029 | 4_2:-39722035 | None:intergenic |
AGAGATCCATGATATGATTA+CGG | 0.478324 | 4_2:-39722257 | None:intergenic |
GATCCTTCAAGCAGCGCCGC+CGG | 0.494333 | 4_2:+39722040 | Msa0599670:CDS |
GGGTTTCTTGGAAGAAGGAC+CGG | 0.498668 | 4_2:-39722059 | None:intergenic |
ACTCGTCAAGTGTGTCCTCT+TGG | 0.508929 | 4_2:+39725387 | Msa0599670:CDS |
CTGCTTGAAGGATCGCCGGC+GGG | 0.510301 | 4_2:-39722031 | None:intergenic |
GAGTGGGAGTTTCAGAAATA+CGG | 0.526266 | 4_2:+39725504 | Msa0599670:CDS |
GCTGTTGCTCTCTGGGCTTG+GGG | 0.534795 | 4_2:+39722109 | Msa0599670:CDS |
TAGCACTAGCCTGATTAGCT+TGG | 0.541707 | 4_2:-39722385 | None:intergenic |
TAAAACTTTACATTTGCAGT+CGG | 0.554869 | 4_2:-39725678 | None:intergenic |
GCTGCTTGAAGGATCGCCGG+CGG | 0.557788 | 4_2:-39722032 | None:intergenic |
CGGCCACTAGTTCGTTGACA+TGG | 0.569410 | 4_2:+39725524 | Msa0599670:exon |
TATTTGCCGTAATCATATCA+TGG | 0.579015 | 4_2:+39722251 | Msa0599670:CDS |
AATTCACACAGCCAGCCAAA+AGG | 0.580599 | 4_2:-39725740 | None:intergenic |
AGGATCGCCGGCGGGAACCA+TGG | 0.584931 | 4_2:-39722023 | None:intergenic |
ACTCGATTCCGACGTAACCA+TGG | 0.594615 | 4_2:+39722006 | Msa0599670:CDS |
TGAGCCATCTACTAATGCAA+TGG | 0.598687 | 4_2:-39725362 | None:intergenic |
TGCAATGGAAGTGAAAAGCA+TGG | 0.613228 | 4_2:-39725347 | None:intergenic |
ATGGACAACAAAGACGTCAA+AGG | 0.616171 | 4_2:-39725554 | None:intergenic |
GACGTAACCATGGTTCCCGC+CGG | 0.624258 | 4_2:+39722016 | Msa0599670:CDS |
AACGCTTCGAGATCAAGAAG+TGG | 0.628822 | 4_2:+39722083 | Msa0599670:CDS |
GAGGAATGCACTGTTGCTTG+GGG | 0.644497 | 4_2:+39722413 | Msa0599670:CDS |
TCAGGCTAGTGCTACTAGCG+AGG | 0.648619 | 4_2:+39722394 | Msa0599670:CDS |
CCACTAGTTCGTTGACATGG+TGG | 0.652923 | 4_2:+39725527 | Msa0599670:exon |
CCACCATGTCAACGAACTAG+TGG | 0.662747 | 4_2:-39725527 | None:intergenic |
TTTCTTGGAAGAAGGACCGG+CGG | 0.670628 | 4_2:-39722056 | None:intergenic |
TGGTACAGACAACAGTGAGT+GGG | 0.670684 | 4_2:+39725488 | Msa0599670:intron |
GGCGGGAACCATGGTTACGT+CGG | 0.675777 | 4_2:-39722014 | None:intergenic |
ATGGTACAGACAACAGTGAG+TGG | 0.676744 | 4_2:+39725487 | Msa0599670:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATAACTAAATATTTTAAA+AGG | - | chr4_2:39722495-39722514 | None:intergenic | 10.0% |
!! | TCAGATATAATTTATAAATA+AGG | - | chr4_2:39723569-39723588 | None:intergenic | 10.0% |
!! | TAATTATTCGATATTTGTTT+CGG | + | chr4_2:39722324-39722343 | Msa0599670:intron | 15.0% |
!! | ATAAAAAAATAAGAGGATTT+GGG | - | chr4_2:39722445-39722464 | None:intergenic | 15.0% |
!! | ATTAACGATAAAAAAATAAG+AGG | - | chr4_2:39722452-39722471 | None:intergenic | 15.0% |
!!! | CTTATTTTTTTATCGTTAAT+CGG | + | chr4_2:39722452-39722471 | Msa0599670:intron | 15.0% |
!!! | TATGTTAATCTTCTTTTATT+AGG | + | chr4_2:39722510-39722529 | Msa0599670:intron | 15.0% |
!!! | ATGTTAATCTTCTTTTATTA+GGG | + | chr4_2:39722511-39722530 | Msa0599670:intron | 15.0% |
!! | ATTAAGAGTCATATAAAAAA+TGG | - | chr4_2:39723247-39723266 | None:intergenic | 15.0% |
!!! | ATGAATTTTTTAACATTCAA+GGG | - | chr4_2:39723292-39723311 | None:intergenic | 15.0% |
!!! | AGCAAAAAATTCATTTTTTT+AGG | - | chr4_2:39723376-39723395 | None:intergenic | 15.0% |
!! | ATAAATTATATCTGAATTCA+TGG | + | chr4_2:39723574-39723593 | Msa0599670:intron | 15.0% |
!! | AATAAAAATAGATTACATGA+TGG | - | chr4_2:39725069-39725088 | None:intergenic | 15.0% |
!! | AACAATAATCGTGAAAATTA+GGG | - | chr4_2:39722171-39722190 | None:intergenic | 20.0% |
!! | AAACAATAATCGTGAAAATT+AGG | - | chr4_2:39722172-39722191 | None:intergenic | 20.0% |
!! | GATAAAAAAATAAGAGGATT+TGG | - | chr4_2:39722446-39722465 | None:intergenic | 20.0% |
!!! | ATCTTGTTCAAAATAGTTTT+AGG | - | chr4_2:39722747-39722766 | None:intergenic | 20.0% |
!! | CTTTGTAATTTATTGCATTT+GGG | - | chr4_2:39722887-39722906 | None:intergenic | 20.0% |
!! | TCTATAAACTTATGTAGATT+TGG | - | chr4_2:39723120-39723139 | None:intergenic | 20.0% |
!!! | GATGAATTTTTTAACATTCA+AGG | - | chr4_2:39723293-39723312 | None:intergenic | 20.0% |
!! | TAAATGTAAGTTATTGAGTT+AGG | + | chr4_2:39723781-39723800 | Msa0599670:intron | 20.0% |
!!! | TCAGTTGAATTAGTTTTTTA+TGG | + | chr4_2:39723805-39723824 | Msa0599670:intron | 20.0% |
!! | TTAGACCTAAATACATATTT+CGG | - | chr4_2:39723842-39723861 | None:intergenic | 20.0% |
!!! | ATGAATTTTTTAACACTCAA+GGG | - | chr4_2:39724004-39724023 | None:intergenic | 20.0% |
!! | AGCACTAAATATAAAAAGTA+GGG | - | chr4_2:39724150-39724169 | None:intergenic | 20.0% |
!! | TAGCACTAAATATAAAAAGT+AGG | - | chr4_2:39724151-39724170 | None:intergenic | 20.0% |
!!! | TTTAGTGCTATTTTCTAATT+TGG | + | chr4_2:39724161-39724180 | Msa0599670:intron | 20.0% |
!! | AATTGGAAATAAATTCTTGT+GGG | + | chr4_2:39724430-39724449 | Msa0599670:intron | 20.0% |
!!! | ATAACTTTTAAGATCTTCAT+TGG | - | chr4_2:39724577-39724596 | None:intergenic | 20.0% |
!! | TATATATGAAAAGTAGATAG+TGG | + | chr4_2:39725020-39725039 | Msa0599670:intron | 20.0% |
!! | ATATATGAAAAGTAGATAGT+GGG | + | chr4_2:39725021-39725040 | Msa0599670:intron | 20.0% |
!!! | ATTTTCTTTTAATTGTCTTC+TGG | + | chr4_2:39725608-39725627 | Msa0599670:three_prime_UTR | 20.0% |
!!! | ATTATTGTTTTGATCGCTTT+TGG | + | chr4_2:39722182-39722201 | Msa0599670:intron | 25.0% |
! | ACAAAAATTTCCTGAAAAGT+TGG | - | chr4_2:39722710-39722729 | None:intergenic | 25.0% |
! | GAATAAAAAAACTACCTAGA+CGG | - | chr4_2:39722801-39722820 | None:intergenic | 25.0% |
! | GCTTTGTAATTTATTGCATT+TGG | - | chr4_2:39722888-39722907 | None:intergenic | 25.0% |
!!! | CGAATATAAGATTTTGAGTT+AGG | + | chr4_2:39723039-39723058 | Msa0599670:intron | 25.0% |
! | ACTAGATACTTAGAACTATT+TGG | - | chr4_2:39723315-39723334 | None:intergenic | 25.0% |
!!! | ATTTTTAACTGCTTTGATCT+TGG | + | chr4_2:39723511-39723530 | Msa0599670:intron | 25.0% |
! | AATCTATTGCATTATAGCAA+AGG | - | chr4_2:39723618-39723637 | None:intergenic | 25.0% |
! | CTATAATGCAATAGATTACA+AGG | + | chr4_2:39723621-39723640 | Msa0599670:intron | 25.0% |
! | AACAAAAGCAGGAAAAATTT+GGG | - | chr4_2:39723665-39723684 | None:intergenic | 25.0% |
! | TGTATTTAGGTCTAAACATA+TGG | + | chr4_2:39723847-39723866 | Msa0599670:intron | 25.0% |
!!! | GATGAATTTTTTAACACTCA+AGG | - | chr4_2:39724005-39724024 | None:intergenic | 25.0% |
! | ACTAGTTGATCTTAATCTTA+TGG | + | chr4_2:39724233-39724252 | Msa0599670:intron | 25.0% |
!! | AATTTCAAGTAAAACTAAGC+CGG | + | chr4_2:39724327-39724346 | Msa0599670:intron | 25.0% |
! | GATATGTTACAATATTTCCT+CGG | - | chr4_2:39724372-39724391 | None:intergenic | 25.0% |
! | AAGCAGTTTCATATATCAAT+TGG | + | chr4_2:39724413-39724432 | Msa0599670:intron | 25.0% |
! | CAATTGGAAATAAATTCTTG+TGG | + | chr4_2:39724429-39724448 | Msa0599670:intron | 25.0% |
! | ATTGGAAATAAATTCTTGTG+GGG | + | chr4_2:39724431-39724450 | Msa0599670:intron | 25.0% |
!! | TTAGAGCACTATATATGTAA+TGG | - | chr4_2:39724459-39724478 | None:intergenic | 25.0% |
! | AAAATAGATTACATGATGGT+GGG | - | chr4_2:39725065-39725084 | None:intergenic | 25.0% |
! | AAAAATAGATTACATGATGG+TGG | - | chr4_2:39725066-39725085 | None:intergenic | 25.0% |
! | TTGAGATCAATAAGCATATT+CGG | - | chr4_2:39725243-39725262 | None:intergenic | 25.0% |
!!! | TACTGTAATTTTTTCTGTGA+TGG | + | chr4_2:39725468-39725487 | Msa0599670:intron | 25.0% |
!! | TAAGATAGCAGTTTGTTTAA+TGG | + | chr4_2:39725642-39725661 | Msa0599670:three_prime_UTR | 25.0% |
! | TAAAACTTTACATTTGCAGT+CGG | - | chr4_2:39725681-39725700 | None:intergenic | 25.0% |
GAAAATTAGGGTTTACGATT+GGG | - | chr4_2:39722159-39722178 | None:intergenic | 30.0% | |
TGAAAATTAGGGTTTACGAT+TGG | - | chr4_2:39722160-39722179 | None:intergenic | 30.0% | |
TATTTGCCGTAATCATATCA+TGG | + | chr4_2:39722251-39722270 | Msa0599670:CDS | 30.0% | |
AGAGATCCATGATATGATTA+CGG | - | chr4_2:39722260-39722279 | None:intergenic | 30.0% | |
ATTCGATATTTGTTTCGGTT+TGG | + | chr4_2:39722329-39722348 | Msa0599670:intron | 30.0% | |
! | TAGGTCAAATTCTAGGAATA+AGG | + | chr4_2:39722541-39722560 | Msa0599670:intron | 30.0% |
!! | ATAGGGTATTGTGTGTAATT+TGG | - | chr4_2:39722652-39722671 | None:intergenic | 30.0% |
!! | ACAATACCCTATGTTTTTAC+CGG | + | chr4_2:39722660-39722679 | Msa0599670:intron | 30.0% |
!! | GAACAAGATTGCTTTGATTT+TGG | + | chr4_2:39722758-39722777 | Msa0599670:intron | 30.0% |
TGCAATAAATTACAAAGCCA+AGG | + | chr4_2:39722890-39722909 | Msa0599670:intron | 30.0% | |
! | ATTGGTCTGTGTAAAATTGT+TGG | + | chr4_2:39722957-39722976 | Msa0599670:intron | 30.0% |
!!! | ATTTTGAGTTAGGCTTAGTT+TGG | + | chr4_2:39723049-39723068 | Msa0599670:intron | 30.0% |
TGTGATAGAGAAGTTAGAAA+AGG | + | chr4_2:39723169-39723188 | Msa0599670:intron | 30.0% | |
!! | TTTTGCTTTTAAGTGACTAG+AGG | + | chr4_2:39723389-39723408 | Msa0599670:intron | 30.0% |
!! | TTTGCTTTTAAGTGACTAGA+GGG | + | chr4_2:39723390-39723409 | Msa0599670:intron | 30.0% |
ATGTTAATGTGTCATCTCTT+AGG | + | chr4_2:39723424-39723443 | Msa0599670:intron | 30.0% | |
TGTTAATGTGTCATCTCTTA+GGG | + | chr4_2:39723425-39723444 | Msa0599670:intron | 30.0% | |
!! | TAAGGTCAAATTCTAGGATA+AGG | + | chr4_2:39723455-39723474 | Msa0599670:intron | 30.0% |
TGCAATAGATTACAAGGAAA+AGG | + | chr4_2:39723627-39723646 | Msa0599670:intron | 30.0% | |
GAACAAAAGCAGGAAAAATT+TGG | - | chr4_2:39723666-39723685 | None:intergenic | 30.0% | |
AACCTACTAACAATCTTACA+TGG | - | chr4_2:39723702-39723721 | None:intergenic | 30.0% | |
ATGTAAGATTGTTAGTAGGT+TGG | + | chr4_2:39723701-39723720 | Msa0599670:intron | 30.0% | |
TTCCACCGAAATATGTATTT+AGG | + | chr4_2:39723834-39723853 | Msa0599670:intron | 30.0% | |
AAACATATGGATAAGTTTCC+AGG | + | chr4_2:39723860-39723879 | Msa0599670:intron | 30.0% | |
! | TAGTAAAGAAGCTTCTGAAA+AGG | + | chr4_2:39723898-39723917 | Msa0599670:intron | 30.0% |
CAAAATACATAGAGCTAGTT+AGG | - | chr4_2:39724027-39724046 | None:intergenic | 30.0% | |
TGTTCAATTCCTTAAACTGA+AGG | + | chr4_2:39724121-39724140 | Msa0599670:intron | 30.0% | |
GTTCAATTCCTTAAACTGAA+GGG | + | chr4_2:39724122-39724141 | Msa0599670:intron | 30.0% | |
!!! | GGCTTAGTTTTACTTGAAAT+TGG | - | chr4_2:39724328-39724347 | None:intergenic | 30.0% |
ACTGCTTAAAGTTTAACTCA+TGG | - | chr4_2:39724400-39724419 | None:intergenic | 30.0% | |
TTATAATCACTCCCTTTATG+GGG | - | chr4_2:39724635-39724654 | None:intergenic | 30.0% | |
CTTATAATCACTCCCTTTAT+GGG | - | chr4_2:39724636-39724655 | None:intergenic | 30.0% | |
ACTTATAATCACTCCCTTTA+TGG | - | chr4_2:39724637-39724656 | None:intergenic | 30.0% | |
AACTTGTACTGTCTCATTAA+GGG | - | chr4_2:39724845-39724864 | None:intergenic | 30.0% | |
AAATGTCAACTGTGAATGAT+GGG | - | chr4_2:39724887-39724906 | None:intergenic | 30.0% | |
ACAAGTTTGAAGATTCCATT+TGG | - | chr4_2:39725126-39725145 | None:intergenic | 30.0% | |
GCTTATTGATCTCAATATGA+AGG | + | chr4_2:39725248-39725267 | Msa0599670:intron | 30.0% | |
! | TTATTTAGTTTCTGCTTACG+CGG | + | chr4_2:39725272-39725291 | Msa0599670:intron | 30.0% |
CTCTGTGTATATCTTATACA+GGG | + | chr4_2:39725316-39725335 | Msa0599670:intron | 30.0% | |
TCTGTGTATATCTTATACAG+GGG | + | chr4_2:39725317-39725336 | Msa0599670:intron | 30.0% | |
! | TAGATTTTCAAAAGCTAGGA+TGG | - | chr4_2:39725576-39725595 | None:intergenic | 30.0% |
!!! | GCAGTTTGTTTAATGGATTT+TGG | + | chr4_2:39725649-39725668 | Msa0599670:three_prime_UTR | 30.0% |
! | GCATTTCATTTTCTACCTTT+TGG | + | chr4_2:39725725-39725744 | Msa0599670:three_prime_UTR | 30.0% |
!! | TGTTTCGGTTTGGATTGATT+CGG | + | chr4_2:39722339-39722358 | Msa0599670:intron | 35.0% |
!!! | GTTTGGATTGATTCGGATTT+TGG | + | chr4_2:39722346-39722365 | Msa0599670:intron | 35.0% |
!!! | TTGATTCGGATTTTGGTTGT+AGG | + | chr4_2:39722353-39722372 | Msa0599670:intron | 35.0% |
! | CTTTTATTAGGGTTGAAGCT+AGG | + | chr4_2:39722522-39722541 | Msa0599670:intron | 35.0% |
TTGAAGCTAGGTCAAATTCT+AGG | + | chr4_2:39722534-39722553 | Msa0599670:intron | 35.0% | |
GTTATGCCGGTAAAAACATA+GGG | - | chr4_2:39722669-39722688 | None:intergenic | 35.0% | |
TAAAAAAACTACCTAGACGG+TGG | - | chr4_2:39722798-39722817 | None:intergenic | 35.0% | |
TGTGTAGTTCAAACATTCCT+TGG | - | chr4_2:39722910-39722929 | None:intergenic | 35.0% | |
ATACTACACAAACAGTACCA+GGG | - | chr4_2:39722939-39722958 | None:intergenic | 35.0% | |
AATACTACACAAACAGTACC+AGG | - | chr4_2:39722940-39722959 | None:intergenic | 35.0% | |
TGGTACTGTTTGTGTAGTAT+TGG | + | chr4_2:39722939-39722958 | Msa0599670:intron | 35.0% | |
GTCTGTGTAAAATTGTTGGT+GGG | + | chr4_2:39722961-39722980 | Msa0599670:intron | 35.0% | |
GGAAGCTTCTTAAAAGTTTG+TGG | + | chr4_2:39723190-39723209 | Msa0599670:intron | 35.0% | |
TGAAGCTAAGGTCAAATTCT+AGG | + | chr4_2:39723449-39723468 | Msa0599670:intron | 35.0% | |
AAAAGCAGGAAAAATTTGGG+TGG | - | chr4_2:39723662-39723681 | None:intergenic | 35.0% | |
ATCATAGCATGAACAAAAGC+AGG | - | chr4_2:39723676-39723695 | None:intergenic | 35.0% | |
TGCCATGTAAGATTGTTAGT+AGG | + | chr4_2:39723697-39723716 | Msa0599670:intron | 35.0% | |
! | TAAGATTGTTAGTAGGTTGG+TGG | + | chr4_2:39723704-39723723 | Msa0599670:intron | 35.0% |
TATGATCTTGTGTGAGACAA+AGG | + | chr4_2:39723741-39723760 | Msa0599670:intron | 35.0% | |
GACCTAAATACATATTTCGG+TGG | - | chr4_2:39723839-39723858 | None:intergenic | 35.0% | |
ATATGGATAAGTTTCCAGGT+AGG | + | chr4_2:39723864-39723883 | Msa0599670:intron | 35.0% | |
TATGGATAAGTTTCCAGGTA+GGG | + | chr4_2:39723865-39723884 | Msa0599670:intron | 35.0% | |
! | AGAAGCTTCTGAAAAGGTTT+AGG | + | chr4_2:39723904-39723923 | Msa0599670:intron | 35.0% |
AGTGTCTTTCATCATGTTAG+AGG | - | chr4_2:39724065-39724084 | None:intergenic | 35.0% | |
GGAATTGAACAGACAAAAGA+AGG | - | chr4_2:39724112-39724131 | None:intergenic | 35.0% | |
ATTGGTATATTCTGCACGAT+TGG | - | chr4_2:39724310-39724329 | None:intergenic | 35.0% | |
GCTTAAAGTTTAACTCATGG+TGG | - | chr4_2:39724397-39724416 | None:intergenic | 35.0% | |
TTTACAATCCTCCCCATAAA+GGG | + | chr4_2:39724621-39724640 | Msa0599670:intron | 35.0% | |
AAGGGAGTGATTATAAGTTG+TGG | + | chr4_2:39724639-39724658 | Msa0599670:intron | 35.0% | |
AGGGAGTGATTATAAGTTGT+GGG | + | chr4_2:39724640-39724659 | Msa0599670:intron | 35.0% | |
ATCCCTTCCTCAATATGAAA+CGG | - | chr4_2:39724696-39724715 | None:intergenic | 35.0% | |
ACTTGTACTGTCTCATTAAG+GGG | - | chr4_2:39724844-39724863 | None:intergenic | 35.0% | |
CAACTTGTACTGTCTCATTA+AGG | - | chr4_2:39724846-39724865 | None:intergenic | 35.0% | |
! | AATGATGGGAAATGTCCAAA+GGG | - | chr4_2:39724873-39724892 | None:intergenic | 35.0% |
CAAATGTCAACTGTGAATGA+TGG | - | chr4_2:39724888-39724907 | None:intergenic | 35.0% | |
CATCATTCACAGTTGACATT+TGG | + | chr4_2:39724886-39724905 | Msa0599670:intron | 35.0% | |
ATTCACAGTTGACATTTGGT+GGG | + | chr4_2:39724890-39724909 | Msa0599670:intron | 35.0% | |
! | GTACTGTGCTATTACAGTTT+AGG | + | chr4_2:39725176-39725195 | Msa0599670:intron | 35.0% |
! | TATTTAGTTTCTGCTTACGC+GGG | + | chr4_2:39725273-39725292 | Msa0599670:intron | 35.0% |
GCTCTGTGTATATCTTATAC+AGG | + | chr4_2:39725315-39725334 | Msa0599670:intron | 35.0% | |
ACTTCCATTGCATTAGTAGA+TGG | + | chr4_2:39725358-39725377 | Msa0599670:CDS | 35.0% | |
AAGAAGTTATGCATACCAAG+AGG | - | chr4_2:39725405-39725424 | None:intergenic | 35.0% | |
! | GCTGTAGATTTTCAAAAGCT+AGG | - | chr4_2:39725580-39725599 | None:intergenic | 35.0% |
! | TTCATTTTCTACCTTTTGGC+TGG | + | chr4_2:39725729-39725748 | Msa0599670:three_prime_UTR | 35.0% |
! | TTCTTGATCTCGAAGCGTTT+GGG | - | chr4_2:39722082-39722101 | None:intergenic | 40.0% |
TATTGAGTGCCAAGCTAATC+AGG | + | chr4_2:39722376-39722395 | Msa0599670:CDS | 40.0% | |
AGTTTATGTCTCTACGACGA+TGG | + | chr4_2:39722601-39722620 | Msa0599670:intron | 40.0% | |
GGTTATGCCGGTAAAAACAT+AGG | - | chr4_2:39722670-39722689 | None:intergenic | 40.0% | |
CAATTAACTAGGGGTTATGC+CGG | - | chr4_2:39722682-39722701 | None:intergenic | 40.0% | |
TTGGTCGACCAATTAACTAG+GGG | - | chr4_2:39722691-39722710 | None:intergenic | 40.0% | |
GTTGGTCGACCAATTAACTA+GGG | - | chr4_2:39722692-39722711 | None:intergenic | 40.0% | |
AGTTGGTCGACCAATTAACT+AGG | - | chr4_2:39722693-39722712 | None:intergenic | 40.0% | |
! | AATTGGTCGACCAACTTTTC+AGG | + | chr4_2:39722697-39722716 | Msa0599670:intron | 40.0% |
!! | TGTAAGTTGATCCTCCATAG+TGG | + | chr4_2:39722831-39722850 | Msa0599670:intron | 40.0% |
TGAACTACACAAATTCTCCC+TGG | + | chr4_2:39722919-39722938 | Msa0599670:intron | 40.0% | |
GGTCTGTGTAAAATTGTTGG+TGG | + | chr4_2:39722960-39722979 | Msa0599670:intron | 40.0% | |
TCTTGCGTGATTCAAACTTG+TGG | + | chr4_2:39723004-39723023 | Msa0599670:intron | 40.0% | |
ATCTCTTAGGGTTGAAGCTA+AGG | + | chr4_2:39723437-39723456 | Msa0599670:intron | 40.0% | |
CAAGGAAATATCCACTGTCT+AGG | + | chr4_2:39723537-39723556 | Msa0599670:intron | 40.0% | |
TAAGGATACTACCTAGACAG+TGG | - | chr4_2:39723551-39723570 | None:intergenic | 40.0% | |
ATAAGTTTCCAGGTAGGGAT+AGG | + | chr4_2:39723870-39723889 | Msa0599670:intron | 40.0% | |
TAAGTTTCCAGGTAGGGATA+GGG | + | chr4_2:39723871-39723890 | Msa0599670:intron | 40.0% | |
! | GTTGATGTGGCTTTTTGTGT+TGG | + | chr4_2:39724203-39724222 | Msa0599670:intron | 40.0% |
ACGAAAACAACCTACCCTAT+GGG | - | chr4_2:39724542-39724561 | None:intergenic | 40.0% | |
AACGAAAACAACCTACCCTA+TGG | - | chr4_2:39724543-39724562 | None:intergenic | 40.0% | |
!! | GATCTTCATTGGCTTCAAAG+TGG | - | chr4_2:39724566-39724585 | None:intergenic | 40.0% |
TGTAAAGGAAGGAAGTGAAC+TGG | - | chr4_2:39724607-39724626 | None:intergenic | 40.0% | |
CTTTATGGGGAGGATTGTAA+AGG | - | chr4_2:39724622-39724641 | None:intergenic | 40.0% | |
CTTTACAATCCTCCCCATAA+AGG | + | chr4_2:39724620-39724639 | Msa0599670:intron | 40.0% | |
ATTATAAGTTGTGGGTCTCG+AGG | + | chr4_2:39724648-39724667 | Msa0599670:intron | 40.0% | |
TCCCGTTTCATATTGAGGAA+GGG | + | chr4_2:39724691-39724710 | Msa0599670:intron | 40.0% | |
TCCCTTCCTCAATATGAAAC+GGG | - | chr4_2:39724695-39724714 | None:intergenic | 40.0% | |
TACAAGGGAAAGGAAAGGAA+AGG | - | chr4_2:39724739-39724758 | None:intergenic | 40.0% | |
CATTCTACAAGGGAAAGGAA+AGG | - | chr4_2:39724744-39724763 | None:intergenic | 40.0% | |
CTTTCCTTTCCCTTGTAGAA+TGG | + | chr4_2:39724742-39724761 | Msa0599670:intron | 40.0% | |
! | TCTTGTGTGCCATTCTACAA+GGG | - | chr4_2:39724754-39724773 | None:intergenic | 40.0% |
GAACTAGGAGCAGTACAAAT+GGG | - | chr4_2:39724802-39724821 | None:intergenic | 40.0% | |
TGAACTAGGAGCAGTACAAA+TGG | - | chr4_2:39724803-39724822 | None:intergenic | 40.0% | |
TTGTACTGCTCCTAGTTCAT+AGG | + | chr4_2:39724804-39724823 | Msa0599670:intron | 40.0% | |
CTATCAAGGACCTATGAACT+AGG | - | chr4_2:39724817-39724836 | None:intergenic | 40.0% | |
CTAGTTCATAGGTCCTTGAT+AGG | + | chr4_2:39724815-39724834 | Msa0599670:intron | 40.0% | |
CATTAAGGGGTTACCTATCA+AGG | - | chr4_2:39724831-39724850 | None:intergenic | 40.0% | |
! | ATGATGGGAAATGTCCAAAG+GGG | - | chr4_2:39724872-39724891 | None:intergenic | 40.0% |
! | GAATGATGGGAAATGTCCAA+AGG | - | chr4_2:39724874-39724893 | None:intergenic | 40.0% |
CATTCACAGTTGACATTTGG+TGG | + | chr4_2:39724889-39724908 | Msa0599670:intron | 40.0% | |
! | TTCACAGTTGACATTTGGTG+GGG | + | chr4_2:39724891-39724910 | Msa0599670:intron | 40.0% |
AAAACAAGGGAGCTGAAAGA+AGG | + | chr4_2:39724921-39724940 | Msa0599670:intron | 40.0% | |
ATTTCTGTTGTGAAAGGGAG+AGG | - | chr4_2:39724980-39724999 | None:intergenic | 40.0% | |
TCTCCCTTTCACAACAGAAA+TGG | + | chr4_2:39724979-39724998 | Msa0599670:intron | 40.0% | |
CCTCCATTTCTGTTGTGAAA+GGG | - | chr4_2:39724985-39725004 | None:intergenic | 40.0% | |
TCCTCCATTTCTGTTGTGAA+AGG | - | chr4_2:39724986-39725005 | None:intergenic | 40.0% | |
ACAGAAATGGAGGACAACAT+TGG | + | chr4_2:39724992-39725011 | Msa0599670:intron | 40.0% | |
!! | TTTGTGTCTAGCTCTCCAAA+TGG | + | chr4_2:39725108-39725127 | Msa0599670:intron | 40.0% |
TGCAATGGAAGTGAAAAGCA+TGG | - | chr4_2:39725350-39725369 | None:intergenic | 40.0% | |
TGAGCCATCTACTAATGCAA+TGG | - | chr4_2:39725365-39725384 | None:intergenic | 40.0% | |
CCATGTGCTTTGACTAGTAA+AGG | - | chr4_2:39725436-39725455 | None:intergenic | 40.0% | |
CCTTTACTAGTCAAAGCACA+TGG | + | chr4_2:39725433-39725452 | Msa0599670:intron | 40.0% | |
GAGTGGGAGTTTCAGAAATA+CGG | + | chr4_2:39725504-39725523 | Msa0599670:CDS | 40.0% | |
ATGGACAACAAAGACGTCAA+AGG | - | chr4_2:39725557-39725576 | None:intergenic | 40.0% | |
! | CGTTTGGGTTTCTTGGAAGA+AGG | - | chr4_2:39722067-39722086 | None:intergenic | 45.0% |
! | CTTCTTGATCTCGAAGCGTT+TGG | - | chr4_2:39722083-39722102 | None:intergenic | 45.0% |
AACGCTTCGAGATCAAGAAG+TGG | + | chr4_2:39722083-39722102 | Msa0599670:CDS | 45.0% | |
! | TAGCACTAGCCTGATTAGCT+TGG | - | chr4_2:39722388-39722407 | None:intergenic | 45.0% |
CGGCATAACCCCTAGTTAAT+TGG | + | chr4_2:39722680-39722699 | Msa0599670:intron | 45.0% | |
CAAGCAAATATCCACCGTCT+AGG | + | chr4_2:39722784-39722803 | Msa0599670:intron | 45.0% | |
TAATCGTGACACAGCCACTA+TGG | - | chr4_2:39722848-39722867 | None:intergenic | 45.0% | |
TCTTGTGTGAGACAAAGGCA+TGG | + | chr4_2:39723746-39723765 | Msa0599670:intron | 45.0% | |
GTAGGGTTCCCTTCAGTTTA+AGG | - | chr4_2:39724133-39724152 | None:intergenic | 45.0% | |
!! | GCCAATGCTTCAAGTTGATG+TGG | + | chr4_2:39724190-39724209 | Msa0599670:intron | 45.0% |
GCCACATCAACTTGAAGCAT+TGG | - | chr4_2:39724194-39724213 | None:intergenic | 45.0% | |
CGAAGAGTTCGGATTGTATC+CGG | - | chr4_2:39724349-39724368 | None:intergenic | 45.0% | |
TATTTCCTCGGCGAAGAGTT+CGG | - | chr4_2:39724360-39724379 | None:intergenic | 45.0% | |
AATAGCCTAAGCAGACCCAT+AGG | + | chr4_2:39724524-39724543 | Msa0599670:intron | 45.0% | |
ATAGCCTAAGCAGACCCATA+GGG | + | chr4_2:39724525-39724544 | Msa0599670:intron | 45.0% | |
ATGGGGAGGATTGTAAAGGA+AGG | - | chr4_2:39724618-39724637 | None:intergenic | 45.0% | |
TAATCACTCCCTTTATGGGG+AGG | - | chr4_2:39724632-39724651 | None:intergenic | 45.0% | |
ACCTCTCCCGTTTCATATTG+AGG | + | chr4_2:39724686-39724705 | Msa0599670:intron | 45.0% | |
TCCTCAATATGAAACGGGAG+AGG | - | chr4_2:39724690-39724709 | None:intergenic | 45.0% | |
CTCCCGTTTCATATTGAGGA+AGG | + | chr4_2:39724690-39724709 | Msa0599670:intron | 45.0% | |
! | TGTGCCATTCTACAAGGGAA+AGG | - | chr4_2:39724749-39724768 | None:intergenic | 45.0% |
! | CTCTTGTGTGCCATTCTACA+AGG | - | chr4_2:39724755-39724774 | None:intergenic | 45.0% |
! | GTGGGGCACTCATAAAACAA+GGG | + | chr4_2:39724908-39724927 | Msa0599670:intron | 45.0% |
CTGAAAGAAGGCAATCAAGC+TGG | + | chr4_2:39724933-39724952 | Msa0599670:intron | 45.0% | |
CCCTTTCACAACAGAAATGG+AGG | + | chr4_2:39724982-39725001 | Msa0599670:intron | 45.0% | |
! | TAGTGGGTCCTATTACCAAG+TGG | + | chr4_2:39725037-39725056 | Msa0599670:intron | 45.0% |
AGTGGGTCCTATTACCAAGT+GGG | + | chr4_2:39725038-39725057 | Msa0599670:intron | 45.0% | |
ATGGTACAGACAACAGTGAG+TGG | + | chr4_2:39725487-39725506 | Msa0599670:intron | 45.0% | |
TGGTACAGACAACAGTGAGT+GGG | + | chr4_2:39725488-39725507 | Msa0599670:intron | 45.0% | |
AATTCACACAGCCAGCCAAA+AGG | - | chr4_2:39725743-39725762 | None:intergenic | 45.0% | |
ACTCGATTCCGACGTAACCA+TGG | + | chr4_2:39722006-39722025 | Msa0599670:CDS | 50.0% | |
TTTCTTGGAAGAAGGACCGG+CGG | - | chr4_2:39722059-39722078 | None:intergenic | 50.0% | |
GGGTTTCTTGGAAGAAGGAC+CGG | - | chr4_2:39722062-39722081 | None:intergenic | 50.0% | |
! | CTCGAAGCGTTTGGGTTTCT+TGG | - | chr4_2:39722074-39722093 | None:intergenic | 50.0% |
! | CGAGGAATGCACTGTTGCTT+GGG | + | chr4_2:39722412-39722431 | Msa0599670:CDS | 50.0% |
! | GAGGAATGCACTGTTGCTTG+GGG | + | chr4_2:39722413-39722432 | Msa0599670:CDS | 50.0% |
CTGCTTTGATCTTGGCTGCA+AGG | + | chr4_2:39723519-39723538 | Msa0599670:intron | 50.0% | |
CTAACTTCCCTATCCCTACC+TGG | - | chr4_2:39723881-39723900 | None:intergenic | 50.0% | |
AGTACAAGTTGCCACCCCTT+TGG | + | chr4_2:39724855-39724874 | Msa0599670:intron | 50.0% | |
ATGGGAAATGTCCAAAGGGG+TGG | - | chr4_2:39724869-39724888 | None:intergenic | 50.0% | |
! | GGTGGGGCACTCATAAAACA+AGG | + | chr4_2:39724907-39724926 | Msa0599670:intron | 50.0% |
AGGGAGAGGATTCAAACTCG+TGG | - | chr4_2:39724966-39724985 | None:intergenic | 50.0% | |
ACTCGTCAAGTGTGTCCTCT+TGG | + | chr4_2:39725387-39725406 | Msa0599670:CDS | 50.0% | |
CCACCATGTCAACGAACTAG+TGG | - | chr4_2:39725530-39725549 | None:intergenic | 50.0% | |
CCACTAGTTCGTTGACATGG+TGG | + | chr4_2:39725527-39725546 | Msa0599670:exon | 50.0% | |
AGTGGAACGCTGTTGCTCTC+TGG | + | chr4_2:39722101-39722120 | Msa0599670:CDS | 55.0% | |
GTGGAACGCTGTTGCTCTCT+GGG | + | chr4_2:39722102-39722121 | Msa0599670:CDS | 55.0% | |
! | TCAGGCTAGTGCTACTAGCG+AGG | + | chr4_2:39722394-39722413 | Msa0599670:CDS | 55.0% |
GCGAGGAATGCACTGTTGCT+TGG | + | chr4_2:39722411-39722430 | Msa0599670:CDS | 55.0% | |
TCGTGACACAGCCACTATGG+AGG | - | chr4_2:39722845-39722864 | None:intergenic | 55.0% | |
ACAATCCGAACTCTTCGCCG+AGG | + | chr4_2:39724352-39724371 | Msa0599670:intron | 55.0% | |
CCTACCCTATGGGTCTGCTT+AGG | - | chr4_2:39724532-39724551 | None:intergenic | 55.0% | |
CCTAAGCAGACCCATAGGGT+AGG | + | chr4_2:39724529-39724548 | Msa0599670:intron | 55.0% | |
! | GGTGGGACCCACTTGGTAAT+AGG | - | chr4_2:39725048-39725067 | None:intergenic | 55.0% |
!! | ACATGATGGTGGGACCCACT+TGG | - | chr4_2:39725055-39725074 | None:intergenic | 55.0% |
CGGCCACTAGTTCGTTGACA+TGG | + | chr4_2:39725524-39725543 | Msa0599670:exon | 55.0% | |
GGCGGGAACCATGGTTACGT+CGG | - | chr4_2:39722017-39722036 | None:intergenic | 60.0% | |
GACGTAACCATGGTTCCCGC+CGG | + | chr4_2:39722016-39722035 | Msa0599670:CDS | 60.0% | |
ACGCTGTTGCTCTCTGGGCT+TGG | + | chr4_2:39722107-39722126 | Msa0599670:CDS | 60.0% | |
CGCTGTTGCTCTCTGGGCTT+GGG | + | chr4_2:39722108-39722127 | Msa0599670:CDS | 60.0% | |
GCTGTTGCTCTCTGGGCTTG+GGG | + | chr4_2:39722109-39722128 | Msa0599670:CDS | 60.0% | |
CTGCTTGAAGGATCGCCGGC+GGG | - | chr4_2:39722034-39722053 | None:intergenic | 65.0% | |
GCTGCTTGAAGGATCGCCGG+CGG | - | chr4_2:39722035-39722054 | None:intergenic | 65.0% | |
GGCGCTGCTTGAAGGATCGC+CGG | - | chr4_2:39722038-39722057 | None:intergenic | 65.0% | |
GATCCTTCAAGCAGCGCCGC+CGG | + | chr4_2:39722040-39722059 | Msa0599670:CDS | 65.0% | |
AGGATCGCCGGCGGGAACCA+TGG | - | chr4_2:39722026-39722045 | None:intergenic | 70.0% | |
GGACCGGCGGCGCTGCTTGA+AGG | - | chr4_2:39722046-39722065 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 39721935 | 39725783 | 39721935 | ID=Msa0599670;Name=Msa0599670 |
chr4_2 | mRNA | 39721935 | 39725783 | 39721935 | ID=Msa0599670-mRNA-1;Parent=Msa0599670;Name=Msa0599670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=63|1|1|1|0.75|1|5|250|117 |
chr4_2 | exon | 39721935 | 39722130 | 39721935 | ID=Msa0599670-mRNA-1:exon:8661;Parent=Msa0599670-mRNA-1 |
chr4_2 | exon | 39722229 | 39722279 | 39722229 | ID=Msa0599670-mRNA-1:exon:8662;Parent=Msa0599670-mRNA-1 |
chr4_2 | exon | 39722375 | 39722434 | 39722375 | ID=Msa0599670-mRNA-1:exon:8663;Parent=Msa0599670-mRNA-1 |
chr4_2 | exon | 39725337 | 39725408 | 39725337 | ID=Msa0599670-mRNA-1:exon:8664;Parent=Msa0599670-mRNA-1 |
chr4_2 | exon | 39725496 | 39725783 | 39725496 | ID=Msa0599670-mRNA-1:exon:8665;Parent=Msa0599670-mRNA-1 |
chr4_2 | five_prime_UTR | 39721935 | 39721997 | 39721935 | ID=Msa0599670-mRNA-1:five_prime_utr;Parent=Msa0599670-mRNA-1 |
chr4_2 | CDS | 39721998 | 39722130 | 39721998 | ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1 |
chr4_2 | CDS | 39722229 | 39722279 | 39722229 | ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1 |
chr4_2 | CDS | 39722375 | 39722434 | 39722375 | ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1 |
chr4_2 | CDS | 39725337 | 39725408 | 39725337 | ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1 |
chr4_2 | CDS | 39725496 | 39725533 | 39725496 | ID=Msa0599670-mRNA-1:cds;Parent=Msa0599670-mRNA-1 |
chr4_2 | three_prime_UTR | 39725534 | 39725783 | 39725534 | ID=Msa0599670-mRNA-1:three_prime_utr;Parent=Msa0599670-mRNA-1 |
Gene Sequence |
Protein sequence |