AlfalfaGEDB | Msa0690770

M. sativa cultivar zhongmu-4 / Msa0690770

KEGG: K07977
GO: -
PFAM: PF00025.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690770	XP_003607403.1	99.487	195	1	0	1	195	1	195	2.41e-140	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690770	sp\|P61210\|ARF1_LOCMI	63.483	178	65	0	1	178	1	178	9.58e-84	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690770	G7JRR7	99.487	195	1	0	1	195	1	195	1.15e-140	399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020390	Msa0690770	0.812769	3.589027e-51	-8.615850e-47
Msa0029260	Msa0690770	0.800108	1.682391e-48	-8.615850e-47
Msa0043860	Msa0690770	0.816135	6.465428e-52	-8.615850e-47
Msa0048150	Msa0690770	0.815894	7.316909e-52	-8.615850e-47
Msa0068020	Msa0690770	0.851466	8.714809e-61	-8.615850e-47
Msa0091610	Msa0690770	0.805721	1.164174e-49	-8.615850e-47
Msa0093010	Msa0690770	0.835248	1.874166e-56	-8.615850e-47
Msa0115370	Msa0690770	0.814957	1.182461e-51	-8.615850e-47
Msa0139320	Msa0690770	0.829665	4.533931e-55	-8.615850e-47
Msa0169300	Msa0690770	0.801855	7.395444e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690770	MtrunA17_Chr4g0039591	99.487	195	1	0	1	195	1	195	2.22e-144	399
Msa0690770	MtrunA17_Chr5g0395631	88.718	195	17	1	1	195	1	190	2.24e-128	358
Msa0690770	MtrunA17_Chr5g0395641	77.660	188	40	1	1	186	1	188	1.07e-106	304
Msa0690770	MtrunA17_Chr7g0270301	61.017	177	69	0	1	177	1	177	1.23e-81	240
Msa0690770	MtrunA17_Chr1g0194261	61.017	177	69	0	1	177	1	177	1.58e-81	239
Msa0690770	MtrunA17_Chr6g0450081	61.017	177	69	0	1	177	1	177	2.27e-81	239
Msa0690770	MtrunA17_Chr5g0413451	61.017	177	69	0	1	177	1	177	2.89e-81	239
Msa0690770	MtrunA17_Chr5g0413441	61.017	177	69	0	1	177	1	177	2.89e-81	239
Msa0690770	MtrunA17_Chr5g0401761	58.757	177	73	0	1	177	1	177	5.21e-78	231
Msa0690770	MtrunA17_Chr4g0072861	56.742	178	77	0	1	178	1	178	2.77e-71	214

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690770	AT3G03120.1	91.534	189	16	1	189	1	189	3.24e-130	363
Msa0690770	AT5G17060.2	90.476	189	18	1	189	1	189	3.86e-130	363
Msa0690770	AT5G17060.1	90.476	189	18	1	189	1	189	3.86e-130	363
Msa0690770	AT3G03120.2	93.846	130	8	1	130	1	130	1.72e-87	253
Msa0690770	AT1G10630.1	61.017	177	69	1	177	1	177	1.66e-81	240
Msa0690770	AT1G10630.2	61.017	177	69	1	177	1	177	1.66e-81	240
Msa0690770	AT1G23490.1	61.017	177	69	1	177	1	177	2.44e-81	239
Msa0690770	AT1G70490.2	61.017	177	69	1	177	1	177	2.44e-81	239
Msa0690770	AT1G70490.7	61.017	177	69	1	177	1	177	2.44e-81	239
Msa0690770	AT1G70490.4	61.017	177	69	1	177	1	177	2.44e-81	239

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Find 94 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGATTACCCGCATCT+CGG	0.568887	4_4:+58642543	None:intergenic
AAACTCTTCGATTCCTTCTT+CGG	0.364291	4_4:-58642571	Msa0690770:CDS
AAAGTGTCCTCAATTTCTCT+TGG	0.449055	4_4:+58641321	None:intergenic
AAATAAAACCCACCAATTGT+AGG	0.427108	4_4:+58641841	None:intergenic
AACATTCACAAAGTGTAAGA+TGG	0.480467	4_4:+58638960	None:intergenic
AAGAAACGCAACAGGGAAGA+AGG	0.506824	4_4:-58642666	Msa0690770:five_prime_UTR
AAGAGAAATTGAGGACACTT+TGG	0.498427	4_4:-58641319	Msa0690770:CDS
AAGGGTGATGGCCTTTATGA+GGG	0.543901	4_4:-58639449	Msa0690770:CDS
AAGTGACAGTTATATTATTG+TGG	0.567461	4_4:+58638789	None:intergenic
AATAGAAAATGGCACATACA+AGG	0.575931	4_4:-58639485	Msa0690770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGCAATAATTCGATTATGT+CGG	-	chr4_4:58639391-58639410	Msa0690770:CDS	30.0%
AGCAATAATTCGATTATGTC+GGG	-	chr4_4:58639392-58639411	Msa0690770:CDS	30.0%
ATATTGTACAAGCTTCACAT+TGG	-	chr4_4:58639614-58639633	Msa0690770:intron	30.0%
TTATCTACTGTTCCTACAAT+TGG	-	chr4_4:58639644-58639663	Msa0690770:intron	30.0%
AAATAAAACCCACCAATTGT+AGG	+	chr4_4:58639659-58639678	None:intergenic	30.0%
ATGCTTCCTAATTATCTACT+TGG	-	chr4_4:58639804-58639823	Msa0690770:intron	30.0%
CAACAACCAAGTAGATAATT+AGG	+	chr4_4:58639813-58639832	None:intergenic	30.0%
TGTTTAAATATGCTTGTGAG+CGG	-	chr4_4:58639843-58639862	Msa0690770:intron	30.0%
TAGAACATCAGAATTCATGA+GGG	+	chr4_4:58639882-58639901	None:intergenic	30.0%
ATAGAACATCAGAATTCATG+AGG	+	chr4_4:58639883-58639902	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	58638767	58642752	58638767	ID=Msa0690770;Name=Msa0690770
chr4_4	mRNA	58638767	58642752	58638767	ID=Msa0690770-mRNA-1;Parent=Msa0690770;Name=Msa0690770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=141\|1\|1\|1\|0.83\|0.71\|7\|512\|195
chr4_4	exon	58638767	58639270	58638767	ID=Msa0690770-mRNA-1:exon:15793;Parent=Msa0690770-mRNA-1
chr4_4	exon	58639359	58639564	58639359	ID=Msa0690770-mRNA-1:exon:15792;Parent=Msa0690770-mRNA-1
chr4_4	exon	58640897	58640962	58640897	ID=Msa0690770-mRNA-1:exon:15791;Parent=Msa0690770-mRNA-1
chr4_4	exon	58641055	58641114	58641055	ID=Msa0690770-mRNA-1:exon:15790;Parent=Msa0690770-mRNA-1
chr4_4	exon	58641289	58641404	58641289	ID=Msa0690770-mRNA-1:exon:15789;Parent=Msa0690770-mRNA-1
chr4_4	exon	58641854	58641944	58641854	ID=Msa0690770-mRNA-1:exon:15788;Parent=Msa0690770-mRNA-1
chr4_4	exon	58642555	58642752	58642555	ID=Msa0690770-mRNA-1:exon:15787;Parent=Msa0690770-mRNA-1
chr4_4	five_prime_UTR	58642612	58642752	58642612	ID=Msa0690770-mRNA-1:five_prime_utr;Parent=Msa0690770-mRNA-1
chr4_4	CDS	58642555	58642611	58642555	ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1
chr4_4	CDS	58641854	58641944	58641854	ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1
chr4_4	CDS	58641289	58641404	58641289	ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1
chr4_4	CDS	58641055	58641114	58641055	ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1
chr4_4	CDS	58640897	58640962	58640897	ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1
chr4_4	CDS	58639367	58639564	58639367	ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1
chr4_4	three_prime_UTR	58639359	58639366	58639359	ID=Msa0690770-mRNA-1:three_prime_utr;Parent=Msa0690770-mRNA-1
chr4_4	three_prime_UTR	58638767	58639270	58638767	ID=Msa0690770-mRNA-1:three_prime_utr;Parent=Msa0690770-mRNA-1

Gene Sequence

>Msa0690770

ATGGGTCAAGCTTTTCGCAAACTCTTCGATTCCTTCTTCGGCAATACCGAGATGCGGGTTGTCATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATATTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTACAATTGGTTTCAACGTAGAGAAAGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGCCAAGAGAAATTGAGGACACTTTGGAGGCACTATTTTAACAACACAGATGGTTTGATATATGTTGTTGATAGTCTGGACCGTGAGAGAATTGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGACCCGTTTATGCTCAACAGTGTCATCTTGGTACTTGCCAACAAACAAGACCTGAGAGGAGCGATGACGGCAAGGGAAGTGTGTGACGGATTAGGTCTCTTTGATCTAAAGAATAGAAAATGGCACATACAAGGCACCTGTGCACTTAAGGGTGATGGCCTTTATGAGGGTTTGGACTGGTTGTCCTCAACACTGAAGGAGATGAAGGCTGCTGGATACTCTTCATTAGGACTAGGAACTTCATCCTTCTAA

Protein sequence

>Msa0690770

MGQAFRKLFDSFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLNSVILVLANKQDLRGAMTAREVCDGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLSSTLKEMKAAGYSSLGLGTSSF*