Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690770 | XP_003607403.1 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.41e-140 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690770 | sp|P61210|ARF1_LOCMI | 63.483 | 178 | 65 | 0 | 1 | 178 | 1 | 178 | 9.58e-84 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690770 | G7JRR7 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 1.15e-140 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0690770 | 0.812769 | 3.589027e-51 | -8.615850e-47 |
| Msa0029260 | Msa0690770 | 0.800108 | 1.682391e-48 | -8.615850e-47 |
| Msa0043860 | Msa0690770 | 0.816135 | 6.465428e-52 | -8.615850e-47 |
| Msa0048150 | Msa0690770 | 0.815894 | 7.316909e-52 | -8.615850e-47 |
| Msa0068020 | Msa0690770 | 0.851466 | 8.714809e-61 | -8.615850e-47 |
| Msa0091610 | Msa0690770 | 0.805721 | 1.164174e-49 | -8.615850e-47 |
| Msa0093010 | Msa0690770 | 0.835248 | 1.874166e-56 | -8.615850e-47 |
| Msa0115370 | Msa0690770 | 0.814957 | 1.182461e-51 | -8.615850e-47 |
| Msa0605510 | Msa0690770 | 0.828380 | 9.284015e-55 | -8.615850e-47 |
| Msa0607690 | Msa0690770 | 0.810963 | 8.874805e-51 | -8.615850e-47 |
| Msa0610550 | Msa0690770 | 0.850295 | 1.862838e-60 | -8.615850e-47 |
| Msa0646470 | Msa0690770 | 0.825247 | 5.202793e-54 | -8.615850e-47 |
| Msa0648010 | Msa0690770 | 0.849366 | 3.385543e-60 | -8.615850e-47 |
| Msa0651050 | Msa0690770 | 0.805525 | 1.280129e-49 | -8.615850e-47 |
| Msa0662630 | Msa0690770 | 0.810973 | 8.830848e-51 | -8.615850e-47 |
| Msa0672100 | Msa0690770 | 0.825253 | 5.184983e-54 | -8.615850e-47 |
| Msa0690770 | Msa0693210 | 0.880789 | 4.110645e-70 | -8.615850e-47 |
| Msa0690770 | Msa0697080 | 0.809848 | 1.545038e-50 | -8.615850e-47 |
| Msa0690770 | Msa0808800 | 0.805984 | 1.024941e-49 | -8.615850e-47 |
| Msa0690770 | Msa0838370 | 0.816850 | 4.471327e-52 | -8.615850e-47 |
| Msa0690770 | Msa0858440 | 0.818258 | 2.153219e-52 | -8.615850e-47 |
| Msa0690770 | Msa0994290 | 0.830705 | 2.526014e-55 | -8.615850e-47 |
| Msa0690770 | Msa1039900 | 0.834215 | 3.409013e-56 | -8.615850e-47 |
| Msa0690770 | Msa1125500 | 0.801919 | 7.175436e-49 | -8.615850e-47 |
| Msa0690770 | Msa1149440 | 0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa0690770 | Msa1175350 | 0.813807 | 2.123171e-51 | -8.615850e-47 |
| Msa0690770 | Msa1235460 | 0.812953 | 3.270517e-51 | -8.615850e-47 |
| Msa0690770 | Msa1362420 | 0.808036 | 3.772261e-50 | -8.615850e-47 |
| Msa0690770 | Msa1369190 | 0.821963 | 3.052641e-53 | -8.615850e-47 |
| Msa0690770 | Msa1413260 | 0.830176 | 3.402948e-55 | -8.615850e-47 |
| Msa0690770 | Msa1425670 | 0.829818 | 4.159789e-55 | -8.615850e-47 |
| Msa0690770 | Msa1456050 | 0.836283 | 1.024569e-56 | -8.615850e-47 |
| Msa0690770 | Msa1462860 | 0.838031 | 3.660196e-57 | -8.615850e-47 |
| Msa0139320 | Msa0690770 | 0.829665 | 4.533931e-55 | -8.615850e-47 |
| Msa0169300 | Msa0690770 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
| Msa0190590 | Msa0690770 | 0.820861 | 5.483449e-53 | -8.615850e-47 |
| Msa0191070 | Msa0690770 | 0.818634 | 1.769088e-52 | -8.615850e-47 |
| Msa0376820 | Msa0690770 | 0.830438 | 2.936632e-55 | -8.615850e-47 |
| Msa0377820 | Msa0690770 | 0.808308 | 3.301026e-50 | -8.615850e-47 |
| Msa0385500 | Msa0690770 | 0.850635 | 1.495147e-60 | -8.615850e-47 |
| Msa0389510 | Msa0690770 | 0.920725 | 8.894262e-88 | -8.615850e-47 |
| Msa0423750 | Msa0690770 | 0.812502 | 4.104898e-51 | -8.615850e-47 |
| Msa0456430 | Msa0690770 | 0.873955 | 9.843734e-68 | -8.615850e-47 |
| Msa0460740 | Msa0690770 | 0.802263 | 6.096272e-49 | -8.615850e-47 |
| Msa0462600 | Msa0690770 | 0.815308 | 9.879924e-52 | -8.615850e-47 |
| Msa0466350 | Msa0690770 | 0.830259 | 3.247563e-55 | -8.615850e-47 |
| Msa0471960 | Msa0690770 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
| Msa0472130 | Msa0690770 | 0.822870 | 1.879480e-53 | -8.615850e-47 |
| Msa0245060 | Msa0690770 | 0.815127 | 1.084167e-51 | -8.615850e-47 |
| Msa0257490 | Msa0690770 | 0.817534 | 3.137953e-52 | -8.615850e-47 |
| Msa0269470 | Msa0690770 | 0.831214 | 1.895173e-55 | -8.615850e-47 |
| Msa0296790 | Msa0690770 | 0.804278 | 2.332642e-49 | -8.615850e-47 |
| Msa0304660 | Msa0690770 | 0.801973 | 6.992671e-49 | -8.615850e-47 |
| Msa0331700 | Msa0690770 | 0.800095 | 1.692340e-48 | -8.615850e-47 |
| Msa0348830 | Msa0690770 | 0.813725 | 2.213171e-51 | -8.615850e-47 |
| Msa0358770 | Msa0690770 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0484740 | Msa0690770 | 0.809923 | 1.488569e-50 | -8.615850e-47 |
| Msa0485710 | Msa0690770 | 0.803455 | 3.457078e-49 | -8.615850e-47 |
| Msa0544540 | Msa0690770 | 0.880049 | 7.555570e-70 | -8.615850e-47 |
| Msa0559790 | Msa0690770 | 0.804765 | 1.845853e-49 | -8.615850e-47 |
| Msa0580230 | Msa0690770 | 0.924041 | 1.195800e-89 | -8.615850e-47 |
| Msa0580280 | Msa0690770 | 0.933516 | 1.666660e-95 | -8.615850e-47 |
| Msa0588260 | Msa0690770 | 0.808442 | 3.091543e-50 | -8.615850e-47 |
| Msa0599670 | Msa0690770 | 0.826980 | 2.014359e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690770 | MtrunA17_Chr4g0039591 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.22e-144 | 399 |
| Msa0690770 | MtrunA17_Chr5g0395631 | 88.718 | 195 | 17 | 1 | 1 | 195 | 1 | 190 | 2.24e-128 | 358 |
| Msa0690770 | MtrunA17_Chr5g0395641 | 77.660 | 188 | 40 | 1 | 1 | 186 | 1 | 188 | 1.07e-106 | 304 |
| Msa0690770 | MtrunA17_Chr7g0270301 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.23e-81 | 240 |
| Msa0690770 | MtrunA17_Chr1g0194261 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.58e-81 | 239 |
| Msa0690770 | MtrunA17_Chr6g0450081 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.27e-81 | 239 |
| Msa0690770 | MtrunA17_Chr5g0413451 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.89e-81 | 239 |
| Msa0690770 | MtrunA17_Chr5g0413441 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.89e-81 | 239 |
| Msa0690770 | MtrunA17_Chr5g0401761 | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 5.21e-78 | 231 |
| Msa0690770 | MtrunA17_Chr4g0072861 | 56.742 | 178 | 77 | 0 | 1 | 178 | 1 | 178 | 2.77e-71 | 214 |
| Msa0690770 | MtrunA17_Chr1g0188111 | 49.425 | 174 | 88 | 0 | 1 | 174 | 1 | 174 | 4.68e-59 | 183 |
| Msa0690770 | MtrunA17_Chr8g0373271 | 44.304 | 158 | 85 | 3 | 18 | 173 | 17 | 173 | 9.53e-44 | 144 |
| Msa0690770 | MtrunA17_Chr5g0395651 | 78.082 | 73 | 16 | 0 | 1 | 73 | 1 | 73 | 9.14e-36 | 120 |
| Msa0690770 | MtrunA17_Chr2g0287721 | 31.579 | 190 | 119 | 2 | 1 | 181 | 1 | 188 | 1.51e-29 | 108 |
| Msa0690770 | MtrunA17_Chr5g0395671 | 84.906 | 53 | 8 | 0 | 131 | 183 | 43 | 95 | 4.60e-28 | 101 |
| Msa0690770 | MtrunA17_Chr5g0434561 | 34.965 | 143 | 92 | 1 | 11 | 152 | 13 | 155 | 2.53e-27 | 102 |
| Msa0690770 | MtrunA17_Chr5g0401071 | 31.788 | 151 | 102 | 1 | 3 | 152 | 5 | 155 | 3.59e-26 | 99.0 |
| Msa0690770 | MtrunA17_Chr2g0294701 | 29.843 | 191 | 114 | 3 | 8 | 178 | 3 | 193 | 1.34e-24 | 95.1 |
| Msa0690770 | MtrunA17_Chr4g0068171 | 30.366 | 191 | 113 | 3 | 8 | 178 | 3 | 193 | 7.70e-24 | 93.2 |
| Msa0690770 | MtrunA17_Chr7g0271761 | 29.319 | 191 | 115 | 3 | 8 | 178 | 3 | 193 | 5.16e-23 | 91.3 |
| Msa0690770 | MtrunA17_Chr4g0012371 | 26.752 | 157 | 114 | 1 | 18 | 173 | 1 | 157 | 1.46e-20 | 84.0 |
| Msa0690770 | MtrunA17_Chr5g0395661 | 69.767 | 43 | 13 | 0 | 88 | 130 | 1 | 43 | 3.04e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690770 | AT3G03120.1 | 91.534 | 189 | 16 | 0 | 1 | 189 | 1 | 189 | 3.24e-130 | 363 |
| Msa0690770 | AT5G17060.2 | 90.476 | 189 | 18 | 0 | 1 | 189 | 1 | 189 | 3.86e-130 | 363 |
| Msa0690770 | AT5G17060.1 | 90.476 | 189 | 18 | 0 | 1 | 189 | 1 | 189 | 3.86e-130 | 363 |
| Msa0690770 | AT3G03120.2 | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.72e-87 | 253 |
| Msa0690770 | AT1G10630.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.66e-81 | 240 |
| Msa0690770 | AT1G10630.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.66e-81 | 240 |
| Msa0690770 | AT1G23490.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.7 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.4 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.6 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT1G70490.5 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0690770 | AT3G62290.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 4.55e-81 | 239 |
| Msa0690770 | AT3G62290.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 4.55e-81 | 239 |
| Msa0690770 | AT3G62290.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 4.55e-81 | 239 |
| Msa0690770 | AT2G47170.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 5.25e-81 | 239 |
| Msa0690770 | AT2G47170.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 5.25e-81 | 239 |
| Msa0690770 | AT2G47170.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 5.25e-81 | 239 |
| Msa0690770 | AT5G14670.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 6.60e-81 | 238 |
| Msa0690770 | AT5G14670.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 6.60e-81 | 238 |
| Msa0690770 | AT5G14670.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 8.81e-81 | 238 |
| Msa0690770 | AT2G24765.1 | 57.865 | 178 | 75 | 0 | 1 | 178 | 1 | 178 | 2.45e-73 | 219 |
| Msa0690770 | AT2G15310.1 | 53.158 | 190 | 87 | 1 | 1 | 188 | 1 | 190 | 2.96e-71 | 215 |
| Msa0690770 | AT3G22950.1 | 50.575 | 174 | 86 | 0 | 1 | 174 | 1 | 174 | 1.94e-61 | 189 |
| Msa0690770 | AT3G22950.2 | 50.575 | 174 | 86 | 0 | 1 | 174 | 1 | 174 | 1.94e-61 | 189 |
| Msa0690770 | AT2G24765.2 | 58.594 | 128 | 53 | 0 | 1 | 128 | 1 | 128 | 2.90e-51 | 162 |
| Msa0690770 | AT1G02430.1 | 43.684 | 190 | 97 | 4 | 1 | 180 | 1 | 190 | 1.31e-47 | 154 |
| Msa0690770 | AT1G02440.1 | 40.000 | 190 | 104 | 4 | 1 | 180 | 1 | 190 | 6.47e-45 | 147 |
| Msa0690770 | AT2G18390.1 | 45.570 | 158 | 83 | 3 | 18 | 173 | 17 | 173 | 2.70e-44 | 145 |
| Msa0690770 | AT1G02430.2 | 41.875 | 160 | 87 | 3 | 1 | 154 | 1 | 160 | 1.30e-35 | 123 |
| Msa0690770 | AT5G52210.1 | 33.702 | 181 | 113 | 2 | 8 | 181 | 8 | 188 | 6.41e-31 | 112 |
| Msa0690770 | AT5G52210.2 | 33.702 | 181 | 113 | 2 | 8 | 181 | 8 | 188 | 6.41e-31 | 112 |
| Msa0690770 | AT3G49870.1 | 30.814 | 172 | 118 | 1 | 3 | 173 | 5 | 176 | 2.20e-26 | 100 |
| Msa0690770 | AT5G37680.1 | 32.867 | 143 | 95 | 1 | 11 | 152 | 13 | 155 | 2.56e-26 | 99.8 |
| Msa0690770 | AT3G49860.1 | 32.117 | 137 | 92 | 1 | 17 | 152 | 11 | 147 | 2.82e-25 | 97.1 |
| Msa0690770 | AT5G67560.1 | 30.488 | 164 | 113 | 1 | 11 | 173 | 13 | 176 | 1.17e-24 | 95.5 |
| Msa0690770 | AT3G49870.2 | 30.573 | 157 | 108 | 1 | 18 | 173 | 1 | 157 | 9.11e-24 | 92.8 |
| Msa0690770 | AT3G62560.1 | 30.000 | 190 | 113 | 4 | 8 | 177 | 3 | 192 | 1.22e-22 | 90.5 |
| Msa0690770 | AT1G56330.1 | 28.421 | 190 | 116 | 2 | 8 | 177 | 3 | 192 | 1.36e-22 | 90.5 |
| Msa0690770 | AT4G02080.1 | 28.272 | 191 | 117 | 3 | 8 | 178 | 3 | 193 | 3.08e-22 | 89.4 |
| Msa0690770 | AT1G09180.1 | 28.796 | 191 | 116 | 3 | 8 | 178 | 3 | 193 | 7.82e-22 | 88.6 |
| Msa0690770 | AT5G37680.2 | 30.469 | 128 | 89 | 0 | 46 | 173 | 2 | 129 | 1.03e-21 | 86.7 |
| Msa0690770 | AT1G02440.2 | 31.613 | 155 | 70 | 4 | 1 | 154 | 1 | 120 | 1.35e-20 | 83.2 |
Find 94 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAGTTACTCTGCCTTTC+AGG | 0.123010 | 4_4:-58639144 | Msa0690770:three_prime_UTR |
| GAAAGCAAAGCAGGAATTTC+AGG | 0.253795 | 4_4:-58641054 | Msa0690770:intron |
| GATTACCAATCACGACATTT+TGG | 0.262840 | 4_4:+58639202 | None:intergenic |
| TGATTTGATTTGATTTGATT+TGG | 0.281619 | 4_4:+58642696 | None:intergenic |
| AATATAACTGTCACTTCTAT+TGG | 0.301421 | 4_4:-58638782 | Msa0690770:three_prime_UTR |
| GATTGGTAATCAAATTCTTT+TGG | 0.330564 | 4_4:-58639190 | Msa0690770:three_prime_UTR |
| TGATGGCCTTTATGAGGGTT+TGG | 0.331261 | 4_4:-58639444 | Msa0690770:CDS |
| TTGATCTAAAGAATAGAAAA+TGG | 0.336411 | 4_4:-58639496 | Msa0690770:CDS |
| ACAAGGCACCTGTGCACTTA+AGG | 0.339217 | 4_4:-58639468 | Msa0690770:CDS |
| AAACTCTTCGATTCCTTCTT+CGG | 0.364291 | 4_4:-58642571 | Msa0690770:CDS |
| TTATCTACTGTTCCTACAAT+TGG | 0.369753 | 4_4:-58641853 | Msa0690770:intron |
| GTTATATTATTGTGGTCAAA+AGG | 0.373193 | 4_4:+58638797 | None:intergenic |
| ATGACACTGTTGAGCATAAA+CGG | 0.386547 | 4_4:+58640925 | None:intergenic |
| ATTAACAAAGTGGTGAGAAT+TGG | 0.390787 | 4_4:-58642732 | Msa0690770:five_prime_UTR |
| GTCTGGACCGTGAGAGAATT+GGG | 0.392903 | 4_4:-58641076 | Msa0690770:CDS |
| TTATTATGATTCAGTTAGAT+TGG | 0.404356 | 4_4:-58638837 | Msa0690770:three_prime_UTR |
| TAAGGGTGATGGCCTTTATG+AGG | 0.405630 | 4_4:-58639450 | Msa0690770:CDS |
| AGGGAAGTGTGTGACGGATT+AGG | 0.411446 | 4_4:-58639524 | Msa0690770:CDS |
| GTGGTTTAGGTTGTCATGCT+TGG | 0.425719 | 4_4:-58641931 | Msa0690770:intron |
| AAATAAAACCCACCAATTGT+AGG | 0.427108 | 4_4:+58641841 | None:intergenic |
| AGTCTGGACCGTGAGAGAAT+TGG | 0.428076 | 4_4:-58641077 | Msa0690770:CDS |
| GATATATGTTGTTGATAGTC+TGG | 0.429765 | 4_4:-58641093 | Msa0690770:CDS |
| AGAATCAGAAGAAACGCAAC+AGG | 0.438072 | 4_4:-58642674 | Msa0690770:five_prime_UTR |
| CAAGGCACCTGTGCACTTAA+GGG | 0.443318 | 4_4:-58639467 | Msa0690770:CDS |
| ACCAGTCCAAACCCTCATAA+AGG | 0.443770 | 4_4:+58639438 | None:intergenic |
| GCTGCTGGATACTCTTCATT+AGG | 0.445230 | 4_4:-58639389 | Msa0690770:CDS |
| AAAGTGTCCTCAATTTCTCT+TGG | 0.449055 | 4_4:+58641321 | None:intergenic |
| ACATACCAGGTCTTGTTTGT+TGG | 0.462219 | 4_4:+58640891 | None:intergenic |
| GGATAGAAGGTCTTGGATAC+CGG | 0.464749 | 4_4:-58639016 | Msa0690770:three_prime_UTR |
| TATGCTCAACAGTGTCATCT+TGG | 0.465762 | 4_4:-58640920 | Msa0690770:CDS |
| TATTATGATTCAGTTAGATT+GGG | 0.476793 | 4_4:-58638836 | Msa0690770:three_prime_UTR |
| ATGCTTGGTCTTGATGCTGC+TGG | 0.478012 | 4_4:-58641916 | Msa0690770:CDS |
| AACATTCACAAAGTGTAAGA+TGG | 0.480467 | 4_4:+58638960 | None:intergenic |
| TTGCTTTCCCAATTCTCTCA+CGG | 0.480979 | 4_4:+58641069 | None:intergenic |
| TACAGTTACTCTGCCTTTCA+GGG | 0.485049 | 4_4:-58639143 | Msa0690770:three_prime_UTR |
| CACTTCCAAAATGTCGTGAT+TGG | 0.486659 | 4_4:-58639207 | Msa0690770:three_prime_UTR |
| TTTGCTTTGATCTGATCGCA+TGG | 0.488081 | 4_4:-58642608 | Msa0690770:exon |
| CACGTTAAGTGCACGGGTAC+CGG | 0.490269 | 4_4:-58639037 | Msa0690770:three_prime_UTR |
| AAGAGAAATTGAGGACACTT+TGG | 0.498427 | 4_4:-58641319 | Msa0690770:CDS |
| TATGATTCAGTTAGATTGGG+TGG | 0.505038 | 4_4:-58638833 | Msa0690770:three_prime_UTR |
| AAGAAACGCAACAGGGAAGA+AGG | 0.506824 | 4_4:-58642666 | Msa0690770:five_prime_UTR |
| CATCTCGGTATTGCCGAAGA+AGG | 0.507052 | 4_4:+58642558 | None:intergenic |
| TTCACGGTTTGGGATGTTGG+AGG | 0.507103 | 4_4:-58641344 | Msa0690770:CDS |
| GAGAATTGGGAAAGCAAAGC+AGG | 0.509211 | 4_4:-58641063 | Msa0690770:CDS |
| TGCGATCAGATCAAAGCAAA+GGG | 0.512024 | 4_4:+58642611 | None:intergenic |
| GCCTTTATGAGGGTTTGGAC+TGG | 0.513026 | 4_4:-58639439 | Msa0690770:CDS |
| GTGCACGGGTACCGGATAGA+AGG | 0.517598 | 4_4:-58639029 | Msa0690770:three_prime_UTR |
| TTGCTTTGATCTGATCGCAT+GGG | 0.518898 | 4_4:-58642607 | Msa0690770:exon |
| CTGAAGGAGATGAAGGCTGC+TGG | 0.519424 | 4_4:-58639404 | Msa0690770:CDS |
| CTCAACACTGAAGGAGATGA+AGG | 0.520559 | 4_4:-58639411 | Msa0690770:CDS |
| TTATATTATTGTGGTCAAAA+GGG | 0.520902 | 4_4:+58638798 | None:intergenic |
| GTGTAAGATGGAGAAAATCA+AGG | 0.522947 | 4_4:+58638972 | None:intergenic |
| AGAAATTGAGGACACTTTGG+AGG | 0.527256 | 4_4:-58641316 | Msa0690770:CDS |
| TGACACTGTTGAGCATAAAC+GGG | 0.527829 | 4_4:+58640926 | None:intergenic |
| ACCTGTGCACTTAAGGGTGA+TGG | 0.530294 | 4_4:-58639461 | Msa0690770:CDS |
| ATTAATTAACATTAACAAAG+TGG | 0.531971 | 4_4:-58642742 | None:intergenic |
| GGGAGAATGAACAACTGATC+CGG | 0.532710 | 4_4:+58638993 | None:intergenic |
| CAGATCAAAGCAAAGGGAAG+GGG | 0.537826 | 4_4:+58642617 | None:intergenic |
| TTGGAGGCCAAGAGAAATTG+AGG | 0.540924 | 4_4:-58641328 | Msa0690770:CDS |
| AAGGGTGATGGCCTTTATGA+GGG | 0.543901 | 4_4:-58639449 | Msa0690770:CDS |
| CGGTACCCGTGCACTTAACG+TGG | 0.544589 | 4_4:+58639038 | None:intergenic |
| CTTCATCTCCTTCAGTGTTG+AGG | 0.544907 | 4_4:+58639412 | None:intergenic |
| GCCATCACCCTTAAGTGCAC+AGG | 0.550998 | 4_4:+58639460 | None:intergenic |
| GAGAGGAGCGATGACGGCAA+GGG | 0.553248 | 4_4:-58639543 | Msa0690770:CDS |
| CTTCGGCAATACCGAGATGC+GGG | 0.555246 | 4_4:-58642554 | Msa0690770:intron |
| GGGTACCGGATAGAAGGTCT+TGG | 0.556999 | 4_4:-58639023 | Msa0690770:three_prime_UTR |
| AGAGAGGAGCGATGACGGCA+AGG | 0.563849 | 4_4:-58639544 | Msa0690770:CDS |
| AAGTGACAGTTATATTATTG+TGG | 0.567461 | 4_4:+58638789 | None:intergenic |
| AAAATTGATTACCCGCATCT+CGG | 0.568887 | 4_4:+58642543 | None:intergenic |
| GGTATCCAAGACCTTCTATC+CGG | 0.569552 | 4_4:+58639018 | None:intergenic |
| TGTAAGATGGAGAAAATCAA+GGG | 0.569972 | 4_4:+58638973 | None:intergenic |
| TTTCTAGAGAGGAGCGATGA+CGG | 0.572515 | 4_4:-58639549 | Msa0690770:intron |
| CTGGTTGTCCTCAACACTGA+AGG | 0.574863 | 4_4:-58639420 | Msa0690770:CDS |
| ATCAGATCAAAGCAAAGGGA+AGG | 0.574929 | 4_4:+58642615 | None:intergenic |
| AATAGAAAATGGCACATACA+AGG | 0.575931 | 4_4:-58639485 | Msa0690770:CDS |
| ATGCGATCAGATCAAAGCAA+AGG | 0.579992 | 4_4:+58642610 | None:intergenic |
| TTGTGAATGTTATTTCTGTG+TGG | 0.583983 | 4_4:-58638948 | Msa0690770:three_prime_UTR |
| ACTGAATCATAATAACATGT+TGG | 0.584424 | 4_4:+58638845 | None:intergenic |
| ACATCTTTAAATACCCTGAA+AGG | 0.597782 | 4_4:+58639130 | None:intergenic |
| GGATACTCTTCATTAGGACT+AGG | 0.607922 | 4_4:-58639383 | Msa0690770:CDS |
| AGAAGGTCTTGGATACCGGC+CGG | 0.609106 | 4_4:-58639012 | Msa0690770:three_prime_UTR |
| GCAACAGGGAAGAAGGAACA+AGG | 0.611231 | 4_4:-58642659 | Msa0690770:five_prime_UTR |
| ATACCCCACGTTAAGTGCAC+GGG | 0.614613 | 4_4:-58639043 | Msa0690770:three_prime_UTR |
| TCAGATCAAAGCAAAGGGAA+GGG | 0.617653 | 4_4:+58642616 | None:intergenic |
| ATATTGTACAAGCTTCACAT+TGG | 0.619894 | 4_4:-58641883 | Msa0690770:CDS |
| GATACCCCACGTTAAGTGCA+CGG | 0.622277 | 4_4:-58639044 | Msa0690770:three_prime_UTR |
| GAATGAACAACTGATCCGGC+CGG | 0.629702 | 4_4:+58638997 | None:intergenic |
| TGCACATTCACCAAATCCCA+AGG | 0.632802 | 4_4:+58639239 | None:intergenic |
| ACTTGCCAACAAACAAGACC+TGG | 0.637361 | 4_4:-58640896 | Msa0690770:intron |
| ACGGCAAGGGAAGTGTGTGA+CGG | 0.660211 | 4_4:-58639530 | Msa0690770:CDS |
| TCTTCGGCAATACCGAGATG+CGG | 0.663090 | 4_4:-58642555 | Msa0690770:CDS |
| GGTACCCGTGCACTTAACGT+GGG | 0.671899 | 4_4:+58639039 | None:intergenic |
| GTACCCGTGCACTTAACGTG+GGG | 0.697074 | 4_4:+58639040 | None:intergenic |
| GAATCAGAAGAAACGCAACA+GGG | 0.708414 | 4_4:-58642673 | Msa0690770:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTACATAATCAATTTT+TGG | + | chr4_4:58639090-58639109 | None:intergenic | 10.0% |
| !!! | TGATTATGTAAAATTGATTT+CGG | - | chr4_4:58639095-58639114 | Msa0690770:three_prime_UTR | 15.0% |
| !! | AAATAAAAATAAATCTACTC+TGG | - | chr4_4:58639260-58639279 | Msa0690770:intron | 15.0% |
| !!! | AGAATTAATTTTGACAAATT+TGG | + | chr4_4:58639291-58639310 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTTCTTTCAAATT+TGG | - | chr4_4:58639542-58639561 | Msa0690770:CDS | 15.0% |
| !! | ATTTAAATAGCTGTAATATA+TGG | - | chr4_4:58640817-58640836 | Msa0690770:intron | 15.0% |
| !! | AATATTCATTATTTACTTAC+TGG | - | chr4_4:58641083-58641102 | Msa0690770:CDS | 15.0% |
| !! | GAATTTCTAATTATATTATG+AGG | + | chr4_4:58641530-58641549 | None:intergenic | 15.0% |
| !!! | TCTATTATTTTTATGAATCA+AGG | + | chr4_4:58642587-58642606 | None:intergenic | 15.0% |
| !!! | TGATTTGATTTGATTTGATT+TGG | + | chr4_4:58638804-58638823 | None:intergenic | 20.0% |
| !!! | TCTATGAAACTTTTTTTTGA+TGG | - | chr4_4:58639898-58639917 | Msa0690770:intron | 20.0% |
| !! | AATTGTATTGCAAATATATG+TGG | - | chr4_4:58639967-58639986 | Msa0690770:intron | 20.0% |
| !!! | GTATAAGAATGTTATTTTCA+CGG | - | chr4_4:58640137-58640156 | Msa0690770:intron | 20.0% |
| !! | ATAAGAATAATTGTAGCAAA+AGG | + | chr4_4:58640312-58640331 | None:intergenic | 20.0% |
| !! | CAATTATTCTTATATCCTAT+AGG | - | chr4_4:58640319-58640338 | Msa0690770:intron | 20.0% |
| !!! | AGAACTTTTTTAAGCAAAAA+CGG | - | chr4_4:58641570-58641589 | Msa0690770:intron | 20.0% |
| !! | TTGATGAAATTTGACATATT+GGG | + | chr4_4:58641782-58641801 | None:intergenic | 20.0% |
| !! | ATTGATGAAATTTGACATAT+TGG | + | chr4_4:58641783-58641802 | None:intergenic | 20.0% |
| !! | AATATGTCAAATTTCATCAA+TGG | - | chr4_4:58641782-58641801 | Msa0690770:intron | 20.0% |
| !! | TTGATCTAAAGAATAGAAAA+TGG | - | chr4_4:58642001-58642020 | Msa0690770:intron | 20.0% |
| !!! | GTATATTTTCATTCTTTTGT+AGG | - | chr4_4:58642227-58642246 | Msa0690770:intron | 20.0% |
| !! | TTATTATGATTCAGTTAGAT+TGG | - | chr4_4:58642660-58642679 | Msa0690770:five_prime_UTR | 20.0% |
| !! | TATTATGATTCAGTTAGATT+GGG | - | chr4_4:58642661-58642680 | Msa0690770:five_prime_UTR | 20.0% |
| !! | TTATATTATTGTGGTCAAAA+GGG | + | chr4_4:58642702-58642721 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTAATGCATGTTT+GGG | - | chr4_4:58639061-58639080 | Msa0690770:three_prime_UTR | 25.0% |
| ! | ATTATTATGTAAAAGTGAGC+TGG | - | chr4_4:58639159-58639178 | Msa0690770:three_prime_UTR | 25.0% |
| ! | TCAAACTTGAAGCTAAAAAT+TGG | + | chr4_4:58639228-58639247 | None:intergenic | 25.0% |
| ! | AGAAAGCTACATTAACAATT+TGG | + | chr4_4:58639364-58639383 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTCAAATTTGGTG+TGG | - | chr4_4:58639547-58639566 | Msa0690770:intron | 25.0% |
| ! | AATGCTAATAAAGTTGTGTT+TGG | - | chr4_4:58639754-58639773 | Msa0690770:intron | 25.0% |
| ! | ATTTGCAATACAATTACAGA+GGG | + | chr4_4:58639962-58639981 | None:intergenic | 25.0% |
| ! | TATTTGCAATACAATTACAG+AGG | + | chr4_4:58639963-58639982 | None:intergenic | 25.0% |
| ! | AGCAGAACGAAAATTATAAT+TGG | - | chr4_4:58640038-58640057 | Msa0690770:intron | 25.0% |
| !!! | GTGTTAATTTGTAAGCTTTT+GGG | + | chr4_4:58640476-58640495 | None:intergenic | 25.0% |
| !!! | TGTGTTAATTTGTAAGCTTT+TGG | + | chr4_4:58640477-58640496 | None:intergenic | 25.0% |
| ! | TAGCTGTAATATATGGAATA+TGG | - | chr4_4:58640824-58640843 | Msa0690770:intron | 25.0% |
| ! | ATATATGGAATATGGTTCAA+AGG | - | chr4_4:58640832-58640851 | Msa0690770:intron | 25.0% |
| !! | TGAATATTTTCAACTGTACT+TGG | + | chr4_4:58641071-58641090 | None:intergenic | 25.0% |
| ! | ACAACATATACAAATAGTGA+AGG | + | chr4_4:58641122-58641141 | None:intergenic | 25.0% |
| ! | TTTGTATATGTTGTCATTGT+TGG | - | chr4_4:58641128-58641147 | Msa0690770:intron | 25.0% |
| ! | TTTCTGTTGTCTAAGTTAAA+GGG | - | chr4_4:58641261-58641280 | Msa0690770:intron | 25.0% |
| ! | AAGGGAAGAAAACTTATTTA+AGG | - | chr4_4:58641279-58641298 | Msa0690770:intron | 25.0% |
| ! | AAGATTTGAAAAACATACAC+TGG | + | chr4_4:58641490-58641509 | None:intergenic | 25.0% |
| !!! | TGTATGTTTTTCAAATCTTG+AGG | - | chr4_4:58641491-58641510 | Msa0690770:intron | 25.0% |
| !!! | GTATGTTTTTCAAATCTTGA+GGG | - | chr4_4:58641492-58641511 | Msa0690770:intron | 25.0% |
| ! | GATTACATAAAGAATTCAAG+TGG | + | chr4_4:58641717-58641736 | None:intergenic | 25.0% |
| ! | GGATATACATAATCATACAA+AGG | + | chr4_4:58641836-58641855 | None:intergenic | 25.0% |
| ! | TTGCAGTTATAGCTAAATTA+AGG | + | chr4_4:58641913-58641932 | None:intergenic | 25.0% |
| ! | TTCAAACCTGAAAAATTAGA+AGG | + | chr4_4:58642148-58642167 | None:intergenic | 25.0% |
| !! | TCATTCTTTTGTAGGTATTT+TGG | - | chr4_4:58642235-58642254 | Msa0690770:intron | 25.0% |
| !!! | GATTGGTAATCAAATTCTTT+TGG | - | chr4_4:58642307-58642326 | Msa0690770:intron | 25.0% |
| ! | ACTGAATCATAATAACATGT+TGG | + | chr4_4:58642655-58642674 | None:intergenic | 25.0% |
| ! | GTTATATTATTGTGGTCAAA+AGG | + | chr4_4:58642703-58642722 | None:intergenic | 25.0% |
| ! | AAGTGACAGTTATATTATTG+TGG | + | chr4_4:58642711-58642730 | None:intergenic | 25.0% |
| !! | AATATAACTGTCACTTCTAT+TGG | - | chr4_4:58642715-58642734 | Msa0690770:five_prime_UTR | 25.0% |
| !! | GTAGAGTTTTAATGCATGTT+TGG | - | chr4_4:58639060-58639079 | Msa0690770:three_prime_UTR | 30.0% |
| !! | AGAGTTTTAATGCATGTTTG+GGG | - | chr4_4:58639062-58639081 | Msa0690770:three_prime_UTR | 30.0% |
| CAGCAATAATTCGATTATGT+CGG | - | chr4_4:58639391-58639410 | Msa0690770:CDS | 30.0% | |
| AGCAATAATTCGATTATGTC+GGG | - | chr4_4:58639392-58639411 | Msa0690770:CDS | 30.0% | |
| !! | TTTCAAATTTGGTGTGGTTT+AGG | - | chr4_4:58639553-58639572 | Msa0690770:intron | 30.0% |
| ATATTGTACAAGCTTCACAT+TGG | - | chr4_4:58639614-58639633 | Msa0690770:intron | 30.0% | |
| TTATCTACTGTTCCTACAAT+TGG | - | chr4_4:58639644-58639663 | Msa0690770:intron | 30.0% | |
| AAATAAAACCCACCAATTGT+AGG | + | chr4_4:58639659-58639678 | None:intergenic | 30.0% | |
| ATGCTTCCTAATTATCTACT+TGG | - | chr4_4:58639804-58639823 | Msa0690770:intron | 30.0% | |
| CAACAACCAAGTAGATAATT+AGG | + | chr4_4:58639813-58639832 | None:intergenic | 30.0% | |
| TGTTTAAATATGCTTGTGAG+CGG | - | chr4_4:58639843-58639862 | Msa0690770:intron | 30.0% | |
| TAGAACATCAGAATTCATGA+GGG | + | chr4_4:58639882-58639901 | None:intergenic | 30.0% | |
| ATAGAACATCAGAATTCATG+AGG | + | chr4_4:58639883-58639902 | None:intergenic | 30.0% | |
| TTTGCAATACAATTACAGAG+GGG | + | chr4_4:58639961-58639980 | None:intergenic | 30.0% | |
| TGTATTGCAAATATATGTGG+TGG | - | chr4_4:58639970-58639989 | Msa0690770:intron | 30.0% | |
| GTATTGCAAATATATGTGGT+GGG | - | chr4_4:58639971-58639990 | Msa0690770:intron | 30.0% | |
| TATAAGTTTGTATGCATTGC+AGG | - | chr4_4:58640093-58640112 | Msa0690770:intron | 30.0% | |
| !!! | AGAATGTTATTTTCACGGTT+TGG | - | chr4_4:58640142-58640161 | Msa0690770:intron | 30.0% |
| !!! | GAATGTTATTTTCACGGTTT+GGG | - | chr4_4:58640143-58640162 | Msa0690770:intron | 30.0% |
| !!! | CACTATTTTAACAACACAGA+TGG | - | chr4_4:58640204-58640223 | Msa0690770:intron | 30.0% |
| ! | TTTTAACAACACAGATGGTT+TGG | - | chr4_4:58640209-58640228 | Msa0690770:intron | 30.0% |
| ! | AAAACACAACTTGTGTCATT+TGG | - | chr4_4:58640272-58640291 | Msa0690770:intron | 30.0% |
| !! | GATATATGTTGTTGATAGTC+TGG | - | chr4_4:58640404-58640423 | Msa0690770:intron | 30.0% |
| TAAGTTATAGGTCATTCAGA+TGG | + | chr4_4:58640658-58640677 | None:intergenic | 30.0% | |
| TCTTTACACGTGTAAGTTAT+AGG | + | chr4_4:58640670-58640689 | None:intergenic | 30.0% | |
| CAAAGTCAAATCATGTGAAT+TGG | - | chr4_4:58640696-58640715 | Msa0690770:intron | 30.0% | |
| ACTGGTATGTGCATTAATTA+TGG | + | chr4_4:58640764-58640783 | None:intergenic | 30.0% | |
| TTTCTTTCCTCTTATAATGC+TGG | - | chr4_4:58640862-58640881 | Msa0690770:intron | 30.0% | |
| AAAAACAGAAAACTGCAAGA+CGG | + | chr4_4:58640967-58640986 | None:intergenic | 30.0% | |
| CTTTCTGTTGTCTAAGTTAA+AGG | - | chr4_4:58641260-58641279 | Msa0690770:intron | 30.0% | |
| ! | ATCTAACCAGTGTTGTTAAA+TGG | - | chr4_4:58641305-58641324 | Msa0690770:CDS | 30.0% |
| ! | TCTAACCAGTGTTGTTAAAT+GGG | - | chr4_4:58641306-58641325 | Msa0690770:CDS | 30.0% |
| TTTGAAAAACATACACTGGT+TGG | + | chr4_4:58641486-58641505 | None:intergenic | 30.0% | |
| ! | ACTAGTATCAAGACTTTTTG+TGG | + | chr4_4:58641625-58641644 | None:intergenic | 30.0% |
| AGCTAAATTAAGGCAAACTT+CGG | + | chr4_4:58641903-58641922 | None:intergenic | 30.0% | |
| AATAGAAAATGGCACATACA+AGG | - | chr4_4:58642012-58642031 | Msa0690770:intron | 30.0% | |
| ! | CTTCATCCTTCTAATTTTTC+AGG | - | chr4_4:58642139-58642158 | Msa0690770:intron | 30.0% |
| ACATCTTTAAATACCCTGAA+AGG | + | chr4_4:58642370-58642389 | None:intergenic | 30.0% | |
| TGTAAGATGGAGAAAATCAA+GGG | + | chr4_4:58642527-58642546 | None:intergenic | 30.0% | |
| AACATTCACAAAGTGTAAGA+TGG | + | chr4_4:58642540-58642559 | None:intergenic | 30.0% | |
| !! | TTGTGAATGTTATTTCTGTG+TGG | - | chr4_4:58642549-58642568 | Msa0690770:intron | 30.0% |
| ! | ATCGTGTCACAATTTTCTTT+AGG | - | chr4_4:58642624-58642643 | Msa0690770:five_prime_UTR | 30.0% |
| AAACTCTTCGATTCCTTCTT+CGG | - | chr4_4:58638926-58638945 | Msa0690770:three_prime_UTR | 35.0% | |
| AAAATTGATTACCCGCATCT+CGG | + | chr4_4:58638957-58638976 | None:intergenic | 35.0% | |
| GCAATAATTCGATTATGTCG+GGG | - | chr4_4:58639393-58639412 | Msa0690770:CDS | 35.0% | |
| TTGCAATACAATTACAGAGG+GGG | + | chr4_4:58639960-58639979 | None:intergenic | 35.0% | |
| TTGAATGGATGCAAACATGA+TGG | - | chr4_4:58640004-58640023 | Msa0690770:intron | 35.0% | |
| !! | ATGCAAACATGATGGTGTTT+TGG | - | chr4_4:58640012-58640031 | Msa0690770:intron | 35.0% |
| ! | AAAGTGTCCTCAATTTCTCT+TGG | + | chr4_4:58640179-58640198 | None:intergenic | 35.0% |
| AAGAGAAATTGAGGACACTT+TGG | - | chr4_4:58640178-58640197 | Msa0690770:intron | 35.0% | |
| GACTGAAAAGTCAGGATATT+GGG | - | chr4_4:58640341-58640360 | Msa0690770:intron | 35.0% | |
| GATATTGGGCTAATGTATCA+AGG | - | chr4_4:58640355-58640374 | Msa0690770:intron | 35.0% | |
| CACAACATGTTATTCCAAAC+AGG | - | chr4_4:58640505-58640524 | Msa0690770:intron | 35.0% | |
| AGATCAATTCAAAGCCTGTT+TGG | + | chr4_4:58640522-58640541 | None:intergenic | 35.0% | |
| !! | ACAGGCTTTGAATTGATCTA+TGG | - | chr4_4:58640523-58640542 | Msa0690770:intron | 35.0% |
| ATGACACTGTTGAGCATAAA+CGG | + | chr4_4:58640575-58640594 | None:intergenic | 35.0% | |
| ATACCAGTGCAAACATTGAA+GGG | - | chr4_4:58640776-58640795 | Msa0690770:intron | 35.0% | |
| GGAATATGGTTCAAAGGTTA+AGG | - | chr4_4:58640838-58640857 | Msa0690770:intron | 35.0% | |
| GTAACAACCAGCATTATAAG+AGG | + | chr4_4:58640872-58640891 | None:intergenic | 35.0% | |
| ACCAGACTAATTACACAGAT+GGG | + | chr4_4:58640997-58641016 | None:intergenic | 35.0% | |
| TACCAGACTAATTACACAGA+TGG | + | chr4_4:58640998-58641017 | None:intergenic | 35.0% | |
| ! | ACTGACTTAGAATGTTCACA+TGG | + | chr4_4:58641196-58641215 | None:intergenic | 35.0% |
| CCACCATAGACAATTTATGA+CGG | - | chr4_4:58641375-58641394 | Msa0690770:CDS | 35.0% | |
| CACCATAGACAATTTATGAC+GGG | - | chr4_4:58641376-58641395 | Msa0690770:CDS | 35.0% | |
| ACCATAGACAATTTATGACG+GGG | - | chr4_4:58641377-58641396 | Msa0690770:CDS | 35.0% | |
| !! | GTGTTTATATGGTGGATGTT+TGG | - | chr4_4:58641435-58641454 | Msa0690770:intron | 35.0% |
| !! | TGTTTTTCAAATCTTGAGGG+AGG | - | chr4_4:58641495-58641514 | Msa0690770:intron | 35.0% |
| TTGTGGTCAAGCATAATGAT+GGG | + | chr4_4:58641608-58641627 | None:intergenic | 35.0% | |
| TTTGTGGTCAAGCATAATGA+TGG | + | chr4_4:58641609-58641628 | None:intergenic | 35.0% | |
| ! | TACTAGTGAGACTTGAGTTT+TGG | - | chr4_4:58641638-58641657 | Msa0690770:intron | 35.0% |
| !! | TTTCCTCTTCTTTTCTAGAG+AGG | - | chr4_4:58641937-58641956 | Msa0690770:intron | 35.0% |
| !!! | TTTTGTAGGTATTTTGGCCT+TGG | - | chr4_4:58642241-58642260 | Msa0690770:intron | 35.0% |
| !!! | TTTGTAGGTATTTTGGCCTT+GGG | - | chr4_4:58642242-58642261 | Msa0690770:intron | 35.0% |
| ! | GATTACCAATCACGACATTT+TGG | + | chr4_4:58642298-58642317 | None:intergenic | 35.0% |
| GTGTAAGATGGAGAAAATCA+AGG | + | chr4_4:58642528-58642547 | None:intergenic | 35.0% | |
| TATGATTCAGTTAGATTGGG+TGG | - | chr4_4:58642664-58642683 | Msa0690770:five_prime_UTR | 35.0% | |
| AGAATCAGAAGAAACGCAAC+AGG | - | chr4_4:58638823-58638842 | Msa0690770:three_prime_UTR | 40.0% | |
| GAATCAGAAGAAACGCAACA+GGG | - | chr4_4:58638824-58638843 | Msa0690770:three_prime_UTR | 40.0% | |
| TCAGATCAAAGCAAAGGGAA+GGG | + | chr4_4:58638884-58638903 | None:intergenic | 40.0% | |
| ATCAGATCAAAGCAAAGGGA+AGG | + | chr4_4:58638885-58638904 | None:intergenic | 40.0% | |
| TGCGATCAGATCAAAGCAAA+GGG | + | chr4_4:58638889-58638908 | None:intergenic | 40.0% | |
| ATGCGATCAGATCAAAGCAA+AGG | + | chr4_4:58638890-58638909 | None:intergenic | 40.0% | |
| TTTGCTTTGATCTGATCGCA+TGG | - | chr4_4:58638889-58638908 | Msa0690770:three_prime_UTR | 40.0% | |
| TTGCTTTGATCTGATCGCAT+GGG | - | chr4_4:58638890-58638909 | Msa0690770:three_prime_UTR | 40.0% | |
| TAATTCGATTATGTCGGGGT+TGG | - | chr4_4:58639397-58639416 | Msa0690770:CDS | 40.0% | |
| AATTCGATTATGTCGGGGTT+GGG | - | chr4_4:58639398-58639417 | Msa0690770:CDS | 40.0% | |
| !! | AGCTCAACTGGTTTGAACTA+AGG | - | chr4_4:58639422-58639441 | Msa0690770:CDS | 40.0% |
| !! | GCTCAACTGGTTTGAACTAA+GGG | - | chr4_4:58639423-58639442 | Msa0690770:CDS | 40.0% |
| ! | CTGGTTTGAACTAAGGGATA+AGG | - | chr4_4:58639429-58639448 | Msa0690770:CDS | 40.0% |
| TGAACTAAGGGATAAGGAGT+TGG | - | chr4_4:58639435-58639454 | Msa0690770:CDS | 40.0% | |
| GATAAGGAGTTGGAGATTCA+AGG | - | chr4_4:58639445-58639464 | Msa0690770:CDS | 40.0% | |
| TCTACTGTTCCTACAATTGG+TGG | - | chr4_4:58639647-58639666 | Msa0690770:intron | 40.0% | |
| CTACTGTTCCTACAATTGGT+GGG | - | chr4_4:58639648-58639667 | Msa0690770:intron | 40.0% | |
| GTGGGTTTCTGTGAATTGAA+TGG | - | chr4_4:58639989-58640008 | Msa0690770:intron | 40.0% | |
| CCTCAAAGCTTAAACAACAG+TGG | + | chr4_4:58640071-58640090 | None:intergenic | 40.0% | |
| ! | CCACTGTTGTTTAAGCTTTG+AGG | - | chr4_4:58640068-58640087 | Msa0690770:intron | 40.0% |
| !! | ATTTTCACGGTTTGGGATGT+TGG | - | chr4_4:58640150-58640169 | Msa0690770:intron | 40.0% |
| AGAAATTGAGGACACTTTGG+AGG | - | chr4_4:58640181-58640200 | Msa0690770:intron | 40.0% | |
| TCCTATAGGACTGAAAAGTC+AGG | - | chr4_4:58640333-58640352 | Msa0690770:intron | 40.0% | |
| ! | TCCTGACTTTTCAGTCCTAT+AGG | + | chr4_4:58640337-58640356 | None:intergenic | 40.0% |
| GGACTGAAAAGTCAGGATAT+TGG | - | chr4_4:58640340-58640359 | Msa0690770:intron | 40.0% | |
| TTGCTTTCCCAATTCTCTCA+CGG | + | chr4_4:58640431-58640450 | None:intergenic | 40.0% | |
| GAAAGCAAAGCAGGAATTTC+AGG | - | chr4_4:58640443-58640462 | Msa0690770:intron | 40.0% | |
| TGACACTGTTGAGCATAAAC+GGG | + | chr4_4:58640574-58640593 | None:intergenic | 40.0% | |
| TATGCTCAACAGTGTCATCT+TGG | - | chr4_4:58640577-58640596 | Msa0690770:intron | 40.0% | |
| !! | ACATACCAGGTCTTGTTTGT+TGG | + | chr4_4:58640609-58640628 | None:intergenic | 40.0% |
| CAGATCAAGATACACATACC+AGG | + | chr4_4:58640622-58640641 | None:intergenic | 40.0% | |
| CATACCAGTGCAAACATTGA+AGG | - | chr4_4:58640775-58640794 | Msa0690770:intron | 40.0% | |
| TACCAGTGCAAACATTGAAG+GGG | - | chr4_4:58640777-58640796 | Msa0690770:intron | 40.0% | |
| ACCCATCTGTGTAATTAGTC+TGG | - | chr4_4:58640993-58641012 | Msa0690770:intron | 40.0% | |
| ! | TCAACTGTACTTGGTTCTTG+TGG | + | chr4_4:58641062-58641081 | None:intergenic | 40.0% |
| ACACAAGTGACACAATCTGT+TGG | + | chr4_4:58641170-58641189 | None:intergenic | 40.0% | |
| ATGGTCCCATTTAACAACAC+TGG | + | chr4_4:58641314-58641333 | None:intergenic | 40.0% | |
| ! | AGTGTTGTTAAATGGGACCA+TGG | - | chr4_4:58641313-58641332 | Msa0690770:CDS | 40.0% |
| CCGTCATAAATTGTCTATGG+TGG | + | chr4_4:58641378-58641397 | None:intergenic | 40.0% | |
| CCATAGACAATTTATGACGG+GGG | - | chr4_4:58641378-58641397 | Msa0690770:CDS | 40.0% | |
| ! | CATACACTGGTTGGAATCAA+TGG | + | chr4_4:58641477-58641496 | None:intergenic | 40.0% |
| !! | TAGTGAGACTTGAGTTTTGG+TGG | - | chr4_4:58641641-58641660 | Msa0690770:intron | 40.0% |
| TAATCTTTCCCACATGATCG+TGG | - | chr4_4:58641732-58641751 | Msa0690770:intron | 40.0% | |
| AGTGATCAGCTAGCAATACA+AGG | + | chr4_4:58641857-58641876 | None:intergenic | 40.0% | |
| GGATACTCTTCATTAGGACT+AGG | - | chr4_4:58642114-58642133 | Msa0690770:intron | 40.0% | |
| !! | CAATCACGACATTTTGGAAG+TGG | + | chr4_4:58642292-58642311 | None:intergenic | 40.0% |
| CACTTCCAAAATGTCGTGAT+TGG | - | chr4_4:58642290-58642309 | Msa0690770:intron | 40.0% | |
| ATACAGTTACTCTGCCTTTC+AGG | - | chr4_4:58642353-58642372 | Msa0690770:intron | 40.0% | |
| TACAGTTACTCTGCCTTTCA+GGG | - | chr4_4:58642354-58642373 | Msa0690770:intron | 40.0% | |
| AAGAAACGCAACAGGGAAGA+AGG | - | chr4_4:58638831-58638850 | Msa0690770:three_prime_UTR | 45.0% | |
| CAGATCAAAGCAAAGGGAAG+GGG | + | chr4_4:58638883-58638902 | None:intergenic | 45.0% | |
| !! | GTGGTTTAGGTTGTCATGCT+TGG | - | chr4_4:58639566-58639585 | Msa0690770:intron | 45.0% |
| TTGGAGGCCAAGAGAAATTG+AGG | - | chr4_4:58640169-58640188 | Msa0690770:intron | 45.0% | |
| GAGAATTGGGAAAGCAAAGC+AGG | - | chr4_4:58640434-58640453 | Msa0690770:intron | 45.0% | |
| ACTTGCCAACAAACAAGACC+TGG | - | chr4_4:58640601-58640620 | Msa0690770:intron | 45.0% | |
| TACCCCTTCAATGTTTGCAC+TGG | + | chr4_4:58640782-58640801 | None:intergenic | 45.0% | |
| AGTGCAAACATTGAAGGGGT+AGG | - | chr4_4:58640781-58640800 | Msa0690770:intron | 45.0% | |
| !! | TCTTGTGGTTGGTGGTCTAT+TGG | + | chr4_4:58641047-58641066 | None:intergenic | 45.0% |
| ! | TACTTGGTTCTTGTGGTTGG+TGG | + | chr4_4:58641055-58641074 | None:intergenic | 45.0% |
| ! | CTGTACTTGGTTCTTGTGGT+TGG | + | chr4_4:58641058-58641077 | None:intergenic | 45.0% |
| CCCCCGTCATAAATTGTCTA+TGG | + | chr4_4:58641381-58641400 | None:intergenic | 45.0% | |
| !! | TCAATGGCGGATATGATGGA+AGG | + | chr4_4:58641461-58641480 | None:intergenic | 45.0% |
| !! | GGAATCAATGGCGGATATGA+TGG | + | chr4_4:58641465-58641484 | None:intergenic | 45.0% |
| ! | ACACTGGTTGGAATCAATGG+CGG | + | chr4_4:58641474-58641493 | None:intergenic | 45.0% |
| GTCATGAACCACGATCATGT+GGG | + | chr4_4:58641743-58641762 | None:intergenic | 45.0% | |
| AGTCATGAACCACGATCATG+TGG | + | chr4_4:58641744-58641763 | None:intergenic | 45.0% | |
| ! | GCTCCTCTCTAGAAAAGAAG+AGG | + | chr4_4:58641943-58641962 | None:intergenic | 45.0% |
| ! | TTTCTAGAGAGGAGCGATGA+CGG | - | chr4_4:58641948-58641967 | Msa0690770:intron | 45.0% |
| ! | TAAGGGTGATGGCCTTTATG+AGG | - | chr4_4:58642047-58642066 | Msa0690770:intron | 45.0% |
| ! | AAGGGTGATGGCCTTTATGA+GGG | - | chr4_4:58642048-58642067 | Msa0690770:intron | 45.0% |
| TGATGGCCTTTATGAGGGTT+TGG | - | chr4_4:58642053-58642072 | Msa0690770:intron | 45.0% | |
| ACCAGTCCAAACCCTCATAA+AGG | + | chr4_4:58642062-58642081 | None:intergenic | 45.0% | |
| CTTCATCTCCTTCAGTGTTG+AGG | + | chr4_4:58642088-58642107 | None:intergenic | 45.0% | |
| CTCAACACTGAAGGAGATGA+AGG | - | chr4_4:58642086-58642105 | Msa0690770:intron | 45.0% | |
| GCTGCTGGATACTCTTCATT+AGG | - | chr4_4:58642108-58642127 | Msa0690770:intron | 45.0% | |
| !!! | GGTATTTTGGCCTTGGGATT+TGG | - | chr4_4:58642248-58642267 | Msa0690770:intron | 45.0% |
| TGCACATTCACCAAATCCCA+AGG | + | chr4_4:58642261-58642280 | None:intergenic | 45.0% | |
| GGTATCCAAGACCTTCTATC+CGG | + | chr4_4:58642482-58642501 | None:intergenic | 45.0% | |
| GGATAGAAGGTCTTGGATAC+CGG | - | chr4_4:58642481-58642500 | Msa0690770:intron | 45.0% | |
| GGGAGAATGAACAACTGATC+CGG | + | chr4_4:58642507-58642526 | None:intergenic | 45.0% | |
| GCAACAGGGAAGAAGGAACA+AGG | - | chr4_4:58638838-58638857 | Msa0690770:three_prime_UTR | 50.0% | |
| CATCTCGGTATTGCCGAAGA+AGG | + | chr4_4:58638942-58638961 | None:intergenic | 50.0% | |
| TCTTCGGCAATACCGAGATG+CGG | - | chr4_4:58638942-58638961 | Msa0690770:three_prime_UTR | 50.0% | |
| !! | ATGCTTGGTCTTGATGCTGC+TGG | - | chr4_4:58639581-58639600 | Msa0690770:intron | 50.0% |
| ! | TTCACGGTTTGGGATGTTGG+AGG | - | chr4_4:58640153-58640172 | Msa0690770:intron | 50.0% |
| AGTCTGGACCGTGAGAGAAT+TGG | - | chr4_4:58640420-58640439 | Msa0690770:intron | 50.0% | |
| GTCTGGACCGTGAGAGAATT+GGG | - | chr4_4:58640421-58640440 | Msa0690770:intron | 50.0% | |
| GATACGCATGCACGTGCAAA+AGG | + | chr4_4:58640910-58640929 | None:intergenic | 50.0% | |
| !! | TGGTTGGTGGTCTATTGGCA+GGG | + | chr4_4:58641042-58641061 | None:intergenic | 50.0% |
| !!! | GGAATGGCATGGCGGATTTT+TGG | - | chr4_4:58641348-58641367 | Msa0690770:CDS | 50.0% |
| ! | GCTGCAAGGGCGTGTTTATA+TGG | - | chr4_4:58641424-58641443 | Msa0690770:intron | 50.0% |
| ! | GCAAGGGCGTGTTTATATGG+TGG | - | chr4_4:58641427-58641446 | Msa0690770:intron | 50.0% |
| !! | AGGGAAGTGTGTGACGGATT+AGG | - | chr4_4:58641973-58641992 | Msa0690770:intron | 50.0% |
| ! | ACAAGGCACCTGTGCACTTA+AGG | - | chr4_4:58642029-58642048 | Msa0690770:intron | 50.0% |
| ! | CAAGGCACCTGTGCACTTAA+GGG | - | chr4_4:58642030-58642049 | Msa0690770:intron | 50.0% |
| ACCTGTGCACTTAAGGGTGA+TGG | - | chr4_4:58642036-58642055 | Msa0690770:intron | 50.0% | |
| GCCTTTATGAGGGTTTGGAC+TGG | - | chr4_4:58642058-58642077 | Msa0690770:intron | 50.0% | |
| CTGGTTGTCCTCAACACTGA+AGG | - | chr4_4:58642077-58642096 | Msa0690770:intron | 50.0% | |
| GATACCCCACGTTAAGTGCA+CGG | - | chr4_4:58642453-58642472 | Msa0690770:intron | 50.0% | |
| ATACCCCACGTTAAGTGCAC+GGG | - | chr4_4:58642454-58642473 | Msa0690770:intron | 50.0% | |
| GAATGAACAACTGATCCGGC+CGG | + | chr4_4:58642503-58642522 | None:intergenic | 50.0% | |
| CTTCGGCAATACCGAGATGC+GGG | - | chr4_4:58638943-58638962 | Msa0690770:three_prime_UTR | 55.0% | |
| ! | CATGCACGTGCAAAAGGTGC+AGG | + | chr4_4:58640904-58640923 | None:intergenic | 55.0% |
| !! | GGTTGGTGGTCTATTGGCAG+GGG | + | chr4_4:58641041-58641060 | None:intergenic | 55.0% |
| !! | GTGGTTGGTGGTCTATTGGC+AGG | + | chr4_4:58641043-58641062 | None:intergenic | 55.0% |
| !! | AGCCTATGGTGTTGCCATGG+CGG | + | chr4_4:58641407-58641426 | None:intergenic | 55.0% |
| !! | TGCAGCCTATGGTGTTGCCA+TGG | + | chr4_4:58641410-58641429 | None:intergenic | 55.0% |
| TGGCAACACCATAGGCTGCA+AGG | - | chr4_4:58641410-58641429 | Msa0690770:intron | 55.0% | |
| GGCAACACCATAGGCTGCAA+GGG | - | chr4_4:58641411-58641430 | Msa0690770:intron | 55.0% | |
| AAACACGCCCTTGCAGCCTA+TGG | + | chr4_4:58641421-58641440 | None:intergenic | 55.0% | |
| ! | ACGGCAAGGGAAGTGTGTGA+CGG | - | chr4_4:58641967-58641986 | Msa0690770:intron | 55.0% |
| GCCATCACCCTTAAGTGCAC+AGG | + | chr4_4:58642040-58642059 | None:intergenic | 55.0% | |
| CTGAAGGAGATGAAGGCTGC+TGG | - | chr4_4:58642093-58642112 | Msa0690770:intron | 55.0% | |
| GTACCCGTGCACTTAACGTG+GGG | + | chr4_4:58642460-58642479 | None:intergenic | 55.0% | |
| GGTACCCGTGCACTTAACGT+GGG | + | chr4_4:58642461-58642480 | None:intergenic | 55.0% | |
| CACGTTAAGTGCACGGGTAC+CGG | - | chr4_4:58642460-58642479 | Msa0690770:intron | 55.0% | |
| !! | GGGTACCGGATAGAAGGTCT+TGG | - | chr4_4:58642474-58642493 | Msa0690770:intron | 55.0% |
| AGAAGGTCTTGGATACCGGC+CGG | - | chr4_4:58642485-58642504 | Msa0690770:intron | 55.0% | |
| TCGGGGTTGGGTAGCTCAAC+TGG | - | chr4_4:58639410-58639429 | Msa0690770:CDS | 60.0% | |
| !! | GCCTATGGTGTTGCCATGGC+GGG | + | chr4_4:58641406-58641425 | None:intergenic | 60.0% |
| ! | AGAGAGGAGCGATGACGGCA+AGG | - | chr4_4:58641953-58641972 | Msa0690770:intron | 60.0% |
| ! | GAGAGGAGCGATGACGGCAA+GGG | - | chr4_4:58641954-58641973 | Msa0690770:intron | 60.0% |
| CGGTACCCGTGCACTTAACG+TGG | + | chr4_4:58642462-58642481 | None:intergenic | 60.0% | |
| !! | GTGCACGGGTACCGGATAGA+AGG | - | chr4_4:58642468-58642487 | Msa0690770:intron | 60.0% |
| ATGGGACCATGGCGCTGCCA+TGG | - | chr4_4:58641324-58641343 | Msa0690770:CDS | 65.0% | |
| ATTCCGCCATGGCAGCGCCA+TGG | + | chr4_4:58641333-58641352 | None:intergenic | 65.0% | |
| ! | ATGGCGCTGCCATGGCGGAA+TGG | - | chr4_4:58641332-58641351 | Msa0690770:CDS | 65.0% |
| ! | GCTGCCATGGCGGAATGGCA+TGG | - | chr4_4:58641337-58641356 | Msa0690770:CDS | 65.0% |
| ! | GCCATGGCGGAATGGCATGG+CGG | - | chr4_4:58641340-58641359 | Msa0690770:CDS | 65.0% |
| TCCGCCATGCCATTCCGCCA+TGG | + | chr4_4:58641344-58641363 | None:intergenic | 65.0% | |
| GCCCGCCATGGCAACACCAT+AGG | - | chr4_4:58641402-58641421 | Msa0690770:intron | 65.0% | |
| GGACCATGGCGCTGCCATGG+CGG | - | chr4_4:58641327-58641346 | Msa0690770:CDS | 70.0% | |
| !! | TATGACGGGGGTGCCCGCCA+TGG | - | chr4_4:58641390-58641409 | Msa0690770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 58638767 | 58642752 | 58638767 | ID=Msa0690770;Name=Msa0690770 |
| chr4_4 | mRNA | 58638767 | 58642752 | 58638767 | ID=Msa0690770-mRNA-1;Parent=Msa0690770;Name=Msa0690770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=141|1|1|1|0.83|0.71|7|512|195 |
| chr4_4 | exon | 58638767 | 58639270 | 58638767 | ID=Msa0690770-mRNA-1:exon:15793;Parent=Msa0690770-mRNA-1 |
| chr4_4 | exon | 58639359 | 58639564 | 58639359 | ID=Msa0690770-mRNA-1:exon:15792;Parent=Msa0690770-mRNA-1 |
| chr4_4 | exon | 58640897 | 58640962 | 58640897 | ID=Msa0690770-mRNA-1:exon:15791;Parent=Msa0690770-mRNA-1 |
| chr4_4 | exon | 58641055 | 58641114 | 58641055 | ID=Msa0690770-mRNA-1:exon:15790;Parent=Msa0690770-mRNA-1 |
| chr4_4 | exon | 58641289 | 58641404 | 58641289 | ID=Msa0690770-mRNA-1:exon:15789;Parent=Msa0690770-mRNA-1 |
| chr4_4 | exon | 58641854 | 58641944 | 58641854 | ID=Msa0690770-mRNA-1:exon:15788;Parent=Msa0690770-mRNA-1 |
| chr4_4 | exon | 58642555 | 58642752 | 58642555 | ID=Msa0690770-mRNA-1:exon:15787;Parent=Msa0690770-mRNA-1 |
| chr4_4 | five_prime_UTR | 58642612 | 58642752 | 58642612 | ID=Msa0690770-mRNA-1:five_prime_utr;Parent=Msa0690770-mRNA-1 |
| chr4_4 | CDS | 58642555 | 58642611 | 58642555 | ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1 |
| chr4_4 | CDS | 58641854 | 58641944 | 58641854 | ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1 |
| chr4_4 | CDS | 58641289 | 58641404 | 58641289 | ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1 |
| chr4_4 | CDS | 58641055 | 58641114 | 58641055 | ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1 |
| chr4_4 | CDS | 58640897 | 58640962 | 58640897 | ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1 |
| chr4_4 | CDS | 58639367 | 58639564 | 58639367 | ID=Msa0690770-mRNA-1:cds;Parent=Msa0690770-mRNA-1 |
| chr4_4 | three_prime_UTR | 58639359 | 58639366 | 58639359 | ID=Msa0690770-mRNA-1:three_prime_utr;Parent=Msa0690770-mRNA-1 |
| chr4_4 | three_prime_UTR | 58638767 | 58639270 | 58638767 | ID=Msa0690770-mRNA-1:three_prime_utr;Parent=Msa0690770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
