Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544540 | XP_013455640.1 | 100.000 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 6.19e-82 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544540 | sp|Q940X7|RBX1A_ARATH | 91.525 | 118 | 9 | 1 | 1 | 117 | 1 | 118 | 1.66e-72 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544540 | I3T5Z4 | 100.000 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 2.96e-82 | 245 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0544540 | 0.800434 | 1.444163e-48 | -8.615850e-47 |
| Msa0010500 | Msa0544540 | 0.805419 | 1.347463e-49 | -8.615850e-47 |
| Msa0020390 | Msa0544540 | 0.846779 | 1.752620e-59 | -8.615850e-47 |
| Msa0029260 | Msa0544540 | 0.858026 | 1.092220e-62 | -8.615850e-47 |
| Msa0030300 | Msa0544540 | 0.814594 | 1.422863e-51 | -8.615850e-47 |
| Msa0033880 | Msa0544540 | 0.848252 | 6.900535e-60 | -8.615850e-47 |
| Msa0043860 | Msa0544540 | 0.804576 | 2.021290e-49 | -8.615850e-47 |
| Msa0048150 | Msa0544540 | 0.815547 | 8.740120e-52 | -8.615850e-47 |
| Msa0068020 | Msa0544540 | 0.866991 | 1.900990e-65 | -8.615850e-47 |
| Msa0077900 | Msa0544540 | 0.806345 | 8.607195e-50 | -8.615850e-47 |
| Msa0090550 | Msa0544540 | 0.800198 | 1.612442e-48 | -8.615850e-47 |
| Msa0091610 | Msa0544540 | 0.812525 | 4.058325e-51 | -8.615850e-47 |
| Msa0093010 | Msa0544540 | 0.863591 | 2.232146e-64 | -8.615850e-47 |
| Msa0093420 | Msa0544540 | 0.809702 | 1.660269e-50 | -8.615850e-47 |
| Msa0113240 | Msa0544540 | 0.802928 | 4.445466e-49 | -8.615850e-47 |
| Msa0115370 | Msa0544540 | 0.825590 | 4.313582e-54 | -8.615850e-47 |
| Msa0115990 | Msa0544540 | 0.800243 | 1.579484e-48 | -8.615850e-47 |
| Msa0127850 | Msa0544540 | 0.856781 | 2.550859e-62 | -8.615850e-47 |
| Msa0144420 | Msa0544540 | 0.803604 | 3.220861e-49 | -8.615850e-47 |
| Msa0144430 | Msa0544540 | 0.827297 | 1.691095e-54 | -8.615850e-47 |
| Msa0159440 | Msa0544540 | 0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0166750 | Msa0544540 | 0.812885 | 3.384691e-51 | -8.615850e-47 |
| Msa0167980 | Msa0544540 | 0.811532 | 6.678191e-51 | -8.615850e-47 |
| Msa0169300 | Msa0544540 | 0.857222 | 1.891125e-62 | -8.615850e-47 |
| Msa0174000 | Msa0544540 | 0.828425 | 9.053036e-55 | -8.615850e-47 |
| Msa0180120 | Msa0544540 | 0.800821 | 1.204172e-48 | -8.615850e-47 |
| Msa0183870 | Msa0544540 | 0.828132 | 1.065501e-54 | -8.615850e-47 |
| Msa0190590 | Msa0544540 | 0.824061 | 9.895721e-54 | -8.615850e-47 |
| Msa0191070 | Msa0544540 | 0.852447 | 4.588956e-61 | -8.615850e-47 |
| Msa0231790 | Msa0544540 | 0.806873 | 6.658373e-50 | -8.615850e-47 |
| Msa0233370 | Msa0544540 | 0.813924 | 2.000657e-51 | -8.615850e-47 |
| Msa0384880 | Msa0544540 | 0.835342 | 1.774002e-56 | -8.615850e-47 |
| Msa0385500 | Msa0544540 | 0.833438 | 5.332746e-56 | -8.615850e-47 |
| Msa0389510 | Msa0544540 | 0.864825 | 9.200561e-65 | -8.615850e-47 |
| Msa0423750 | Msa0544540 | 0.803012 | 4.270480e-49 | -8.615850e-47 |
| Msa0425470 | Msa0544540 | 0.807156 | 5.801099e-50 | -8.615850e-47 |
| Msa0456430 | Msa0544540 | 0.829146 | 6.060557e-55 | -8.615850e-47 |
| Msa0466350 | Msa0544540 | 0.803500 | 3.385103e-49 | -8.615850e-47 |
| Msa0471960 | Msa0544540 | 0.835010 | 2.152052e-56 | -8.615850e-47 |
| Msa0481810 | Msa0544540 | 0.811871 | 5.635865e-51 | -8.615850e-47 |
| Msa0244980 | Msa0544540 | 0.813351 | 2.674765e-51 | -8.615850e-47 |
| Msa0245580 | Msa0544540 | 0.800831 | 1.198482e-48 | -8.615850e-47 |
| Msa0257490 | Msa0544540 | 0.813479 | 2.506410e-51 | -8.615850e-47 |
| Msa0269470 | Msa0544540 | 0.864896 | 8.743893e-65 | -8.615850e-47 |
| Msa0296920 | Msa0544540 | 0.815182 | 1.053760e-51 | -8.615850e-47 |
| Msa0358770 | Msa0544540 | 0.805353 | 1.390478e-49 | -8.615850e-47 |
| Msa0484740 | Msa0544540 | 0.818627 | 1.776086e-52 | -8.615850e-47 |
| Msa0485710 | Msa0544540 | 0.831587 | 1.534294e-55 | -8.615850e-47 |
| Msa0516600 | Msa0544540 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0527740 | Msa0544540 | 0.811151 | 8.081534e-51 | -8.615850e-47 |
| Msa0544540 | Msa0560500 | 0.815847 | 7.494154e-52 | -8.615850e-47 |
| Msa0544540 | Msa0580230 | 0.870719 | 1.179614e-66 | -8.615850e-47 |
| Msa0544540 | Msa0580280 | 0.867297 | 1.517945e-65 | -8.615850e-47 |
| Msa0544540 | Msa0593700 | 0.814848 | 1.249702e-51 | -8.615850e-47 |
| Msa0544540 | Msa0599670 | 0.846957 | 1.566754e-59 | -8.615850e-47 |
| Msa0544540 | Msa0605510 | 0.866533 | 2.660178e-65 | -8.615850e-47 |
| Msa0544540 | Msa0607690 | 0.846005 | 2.849665e-59 | -8.615850e-47 |
| Msa0544540 | Msa0609000 | 0.800132 | 1.663646e-48 | -8.615850e-47 |
| Msa0544540 | Msa0610390 | 0.801476 | 8.843069e-49 | -8.615850e-47 |
| Msa0544540 | Msa0610550 | 0.816788 | 4.616179e-52 | -8.615850e-47 |
| Msa0544540 | Msa0618950 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0544540 | Msa0633570 | 0.815359 | 9.628362e-52 | -8.615850e-47 |
| Msa0544540 | Msa0646470 | 0.872782 | 2.440295e-67 | -8.615850e-47 |
| Msa0544540 | Msa0648010 | 0.828529 | 8.547906e-55 | -8.615850e-47 |
| Msa0544540 | Msa0662630 | 0.849972 | 2.294556e-60 | -8.615850e-47 |
| Msa0544540 | Msa0672100 | 0.835024 | 2.134818e-56 | -8.615850e-47 |
| Msa0544540 | Msa0690770 | 0.880049 | 7.555570e-70 | -8.615850e-47 |
| Msa0544540 | Msa0693210 | 0.865989 | 3.957330e-65 | -8.615850e-47 |
| Msa0544540 | Msa0697080 | 0.812511 | 4.085752e-51 | -8.615850e-47 |
| Msa0544540 | Msa0697720 | 0.810848 | 9.396630e-51 | -8.615850e-47 |
| Msa0544540 | Msa0699190 | 0.806382 | 8.452175e-50 | -8.615850e-47 |
| Msa0544540 | Msa0726080 | 0.819039 | 1.431894e-52 | -8.615850e-47 |
| Msa0544540 | Msa0819210 | 0.803498 | 3.387138e-49 | -8.615850e-47 |
| Msa0544540 | Msa0822170 | 0.806665 | 7.368447e-50 | -8.615850e-47 |
| Msa0544540 | Msa0822180 | 0.812663 | 3.784850e-51 | -8.615850e-47 |
| Msa0544540 | Msa0827280 | 0.831602 | 1.521194e-55 | -8.615850e-47 |
| Msa0544540 | Msa0831100 | 0.801877 | 7.316583e-49 | -8.615850e-47 |
| Msa0544540 | Msa0838370 | 0.850259 | 1.905743e-60 | -8.615850e-47 |
| Msa0544540 | Msa0846230 | 0.819550 | 1.095025e-52 | -8.615850e-47 |
| Msa0544540 | Msa0858440 | 0.859392 | 4.270626e-63 | -8.615850e-47 |
| Msa0544540 | Msa0960830 | 0.805177 | 1.513888e-49 | -8.615850e-47 |
| Msa0544540 | Msa0968440 | 0.813613 | 2.342545e-51 | -8.615850e-47 |
| Msa0544540 | Msa0994290 | 0.827753 | 1.314327e-54 | -8.615850e-47 |
| Msa0544540 | Msa1025940 | 0.834858 | 2.350098e-56 | -8.615850e-47 |
| Msa0544540 | Msa1039900 | 0.851811 | 6.958479e-61 | -8.615850e-47 |
| Msa0544540 | Msa1072710 | 0.810940 | 8.975699e-51 | -8.615850e-47 |
| Msa0544540 | Msa1089320 | 0.838070 | 3.576510e-57 | -8.615850e-47 |
| Msa0544540 | Msa1109350 | 0.802367 | 5.801495e-49 | -8.615850e-47 |
| Msa0544540 | Msa1121680 | 0.809107 | 2.228485e-50 | -8.615850e-47 |
| Msa0544540 | Msa1123350 | 0.809059 | 2.281708e-50 | -8.615850e-47 |
| Msa0544540 | Msa1125500 | 0.811191 | 7.922015e-51 | -8.615850e-47 |
| Msa0544540 | Msa1165780 | 0.811632 | 6.353756e-51 | -8.615850e-47 |
| Msa0544540 | Msa1206650 | 0.826271 | 2.973739e-54 | -8.615850e-47 |
| Msa0544540 | Msa1233850 | 0.832393 | 9.700191e-56 | -8.615850e-47 |
| Msa0544540 | Msa1235460 | 0.847023 | 1.503372e-59 | -8.615850e-47 |
| Msa0544540 | Msa1296830 | 0.801012 | 1.100485e-48 | -8.615850e-47 |
| Msa0544540 | Msa1298100 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa0544540 | Msa1307180 | 0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0544540 | Msa1316360 | 0.804251 | 2.362411e-49 | -8.615850e-47 |
| Msa0544540 | Msa1336560 | 0.804666 | 1.936314e-49 | -8.615850e-47 |
| Msa0544540 | Msa1352890 | 0.818763 | 1.654215e-52 | -8.615850e-47 |
| Msa0544540 | Msa1362420 | 0.819580 | 1.077771e-52 | -8.615850e-47 |
| Msa0544540 | Msa1364210 | 0.839174 | 1.855669e-57 | -8.615850e-47 |
| Msa0544540 | Msa1369190 | 0.819679 | 1.023531e-52 | -8.615850e-47 |
| Msa0544540 | Msa1374170 | 0.814860 | 1.242492e-51 | -8.615850e-47 |
| Msa0544540 | Msa1382670 | 0.814003 | 1.921659e-51 | -8.615850e-47 |
| Msa0544540 | Msa1413260 | 0.819298 | 1.249835e-52 | -8.615850e-47 |
| Msa0544540 | Msa1425670 | 0.811138 | 8.132507e-51 | -8.615850e-47 |
| Msa0544540 | Msa1447890 | 0.808710 | 2.709514e-50 | -8.615850e-47 |
| Msa0544540 | Msa1456050 | 0.820579 | 6.366397e-53 | -8.615850e-47 |
| Msa0544540 | Msa1462860 | 0.817650 | 2.954786e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544540 | MtrunA17_Chr4g0024331 | 100.000 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 5.70e-86 | 245 |
| Msa0544540 | MtrunA17_Chr2g0322741 | 93.220 | 118 | 7 | 1 | 1 | 117 | 1 | 118 | 1.10e-78 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544540 | AT5G20570.1 | 91.525 | 118 | 9 | 1 | 1 | 117 | 1 | 118 | 1.69e-73 | 214 |
| Msa0544540 | AT5G20570.3 | 78.676 | 136 | 10 | 2 | 1 | 117 | 1 | 136 | 2.06e-68 | 202 |
| Msa0544540 | AT5G20570.2 | 76.056 | 142 | 9 | 2 | 1 | 117 | 1 | 142 | 5.90e-68 | 201 |
| Msa0544540 | AT3G42830.1 | 82.203 | 118 | 17 | 2 | 1 | 117 | 1 | 115 | 6.02e-62 | 185 |
| Msa0544540 | AT3G05870.1 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 2.96e-16 | 68.6 |
| Msa0544540 | AT3G05870.2 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 2.96e-16 | 68.6 |
| Msa0544540 | AT3G05870.6 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 2.96e-16 | 68.6 |
| Msa0544540 | AT3G05870.7 | 37.349 | 83 | 44 | 2 | 35 | 114 | 1 | 78 | 1.52e-15 | 66.6 |
| Msa0544540 | AT3G05870.4 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 2.00e-15 | 66.6 |
| Msa0544540 | AT3G05870.3 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 2.00e-15 | 66.6 |
| Msa0544540 | AT3G05870.5 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 2.00e-15 | 66.6 |
Find 44 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGTTGCTCTCTGGGCTT+GGG | 0.153878 | 4_1:-33239625 | Msa0544540:CDS |
| TAAGATAGCAGTTTGTTTAA+TGG | 0.183988 | 4_1:-33236801 | Msa0544540:three_prime_UTR |
| CTCGAAGCGTTTGGGTTTCT+TGG | 0.214290 | 4_1:+33239662 | None:intergenic |
| GCAGTTTGTTTAATGGATTT+TGG | 0.256511 | 4_1:-33236794 | Msa0544540:three_prime_UTR |
| ACGCTGTTGCTCTCTGGGCT+TGG | 0.272937 | 4_1:-33239626 | Msa0544540:CDS |
| CTTCTTGATCTCGAAGCGTT+TGG | 0.274138 | 4_1:+33239653 | None:intergenic |
| ACTTCCATTGCATTAGTAGA+TGG | 0.347117 | 4_1:-33237085 | Msa0544540:CDS |
| TTCTTGATCTCGAAGCGTTT+GGG | 0.354057 | 4_1:+33239654 | None:intergenic |
| CGAGGAATGCACTGTTGCTT+GGG | 0.359954 | 4_1:-33239314 | Msa0544540:CDS |
| TATTGAGTGCCAAGCTAATC+AGG | 0.363148 | 4_1:-33239350 | Msa0544540:CDS |
| AGTGGAACGCTGTTGCTCTC+TGG | 0.369514 | 4_1:-33239632 | Msa0544540:CDS |
| GTGGAACGCTGTTGCTCTCT+GGG | 0.417225 | 4_1:-33239631 | Msa0544540:CDS |
| CGTTTGGGTTTCTTGGAAGA+AGG | 0.427213 | 4_1:+33239669 | None:intergenic |
| GCGAGGAATGCACTGTTGCT+TGG | 0.445853 | 4_1:-33239315 | Msa0544540:CDS |
| CTGCTTGAAGGTTCGCCGGC+GGG | 0.446861 | 4_1:+33239702 | None:intergenic |
| GGACCGGCGGCGCTGCTTGA+AGG | 0.448844 | 4_1:+33239690 | None:intergenic |
| GGCGCTGCTTGAAGGTTCGC+CGG | 0.468158 | 4_1:+33239698 | None:intergenic |
| AGAGATCCATGATATGATTA+CGG | 0.478324 | 4_1:+33239467 | None:intergenic |
| GGGTTTCTTGGAAGAAGGAC+CGG | 0.498668 | 4_1:+33239674 | None:intergenic |
| GAACCTTCAAGCAGCGCCGC+CGG | 0.503851 | 4_1:-33239693 | Msa0544540:CDS |
| ACTCGTCAAGTGTGTCCTCT+TGG | 0.508929 | 4_1:-33237056 | Msa0544540:intron |
| GAGTGGGAGTTTCAGAAATA+CGG | 0.526266 | 4_1:-33236939 | Msa0544540:CDS |
| GCTGTTGCTCTCTGGGCTTG+GGG | 0.534795 | 4_1:-33239624 | Msa0544540:intron |
| TAGCACTAGCCTGATTAGCT+TGG | 0.541707 | 4_1:+33239341 | None:intergenic |
| AGGTTCGCCGGCGGGAACCA+TGG | 0.551551 | 4_1:+33239710 | None:intergenic |
| TAAAACTTTACATTTGCAGT+CGG | 0.554869 | 4_1:+33236765 | None:intergenic |
| GCTGCTTGAAGGTTCGCCGG+CGG | 0.559287 | 4_1:+33239701 | None:intergenic |
| CGGCCACTAGTTCGTTGACA+TGG | 0.569410 | 4_1:-33236919 | Msa0544540:exon |
| AATTCACACAGCCAGCCAAA+AGG | 0.570634 | 4_1:+33236703 | None:intergenic |
| TATTTGCCGTAATCATATCA+TGG | 0.579015 | 4_1:-33239473 | Msa0544540:CDS |
| ACTCGATTCCGACGTAACCA+TGG | 0.594615 | 4_1:-33239727 | Msa0544540:CDS |
| TGAGCCATCTACTAATGCAA+TGG | 0.598687 | 4_1:+33237081 | None:intergenic |
| TGCAATGGAAGTGAAAAGCA+TGG | 0.613228 | 4_1:+33237096 | None:intergenic |
| ATGGACTACAAAGACGTCAA+AGG | 0.622991 | 4_1:+33236889 | None:intergenic |
| GACGTAACCATGGTTCCCGC+CGG | 0.624258 | 4_1:-33239717 | Msa0544540:CDS |
| AACGCTTCGAGATCAAGAAG+TGG | 0.628822 | 4_1:-33239650 | Msa0544540:CDS |
| GAGGAATGCACTGTTGCTTG+GGG | 0.644497 | 4_1:-33239313 | Msa0544540:intron |
| TCAGGCTAGTGCTACTAGCG+AGG | 0.648619 | 4_1:-33239332 | Msa0544540:CDS |
| CCACTAGTTCGTTGACATGG+TGG | 0.652923 | 4_1:-33236916 | Msa0544540:exon |
| CCACCATGTCAACGAACTAG+TGG | 0.662747 | 4_1:+33236916 | None:intergenic |
| TTTCTTGGAAGAAGGACCGG+CGG | 0.670628 | 4_1:+33239677 | None:intergenic |
| TGGTACAGACAACAGTGAGT+GGG | 0.670684 | 4_1:-33236955 | Msa0544540:intron |
| GGCGGGAACCATGGTTACGT+CGG | 0.675777 | 4_1:+33239719 | None:intergenic |
| ATGGTACAGACAACAGTGAG+TGG | 0.676744 | 4_1:-33236956 | Msa0544540:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTATCGTTAAT+CGG | - | chr4_1:33237207-33237226 | Msa0544540:intron | 10.0% |
| !! | TAAAAAAAATAAGAGGATTT+GGG | + | chr4_1:33237199-33237218 | None:intergenic | 15.0% |
| !! | ATAAAAAAAATAAGAGGATT+TGG | + | chr4_1:33237200-33237219 | None:intergenic | 15.0% |
| !! | TTAACGATAAAAAAAATAAG+AGG | + | chr4_1:33237206-33237225 | None:intergenic | 15.0% |
| !! | ACATAACTAAATATTGTAAA+AGG | + | chr4_1:33237250-33237269 | None:intergenic | 15.0% |
| !! | ATTAAGAGTCATATAAAAAA+TGG | + | chr4_1:33237954-33237973 | None:intergenic | 15.0% |
| !!! | ATGAATTTTTTAACATTCAA+GGG | + | chr4_1:33237999-33238018 | None:intergenic | 15.0% |
| !!! | AGCAAAAAATTCATTTTTTT+AGG | + | chr4_1:33238083-33238102 | None:intergenic | 15.0% |
| !! | AATAAAAATAGATTACATGA+TGG | + | chr4_1:33239106-33239125 | None:intergenic | 15.0% |
| !! | AACAATAATCGTGAAAATTA+GGG | + | chr4_1:33236918-33236937 | None:intergenic | 20.0% |
| !! | AAACAATAATCGTGAAAATT+AGG | + | chr4_1:33236919-33236938 | None:intergenic | 20.0% |
| !! | AGATTATTTGATATTCGTTT+CGG | - | chr4_1:33237078-33237097 | Msa0544540:CDS | 20.0% |
| !!! | TATGTTAATCTGCTTTTATT+AGG | - | chr4_1:33237265-33237284 | Msa0544540:intron | 20.0% |
| !!! | ATGTTAATCTGCTTTTATTA+GGG | - | chr4_1:33237266-33237285 | Msa0544540:intron | 20.0% |
| !! | CTTTGTAATTTATTGCATTT+GGG | + | chr4_1:33237622-33237641 | None:intergenic | 20.0% |
| !! | TGTATAAACTTATGTAGATT+TGG | + | chr4_1:33237855-33237874 | None:intergenic | 20.0% |
| !!! | GATGAATTTTTTAACATTCA+AGG | + | chr4_1:33238000-33238019 | None:intergenic | 20.0% |
| !! | AGCACTAAATATAAAAAGTA+GGG | + | chr4_1:33238171-33238190 | None:intergenic | 20.0% |
| !! | TAGCACTAAATATAAAAAGT+AGG | + | chr4_1:33238172-33238191 | None:intergenic | 20.0% |
| !! | AATTGGAAATAAATTCTTGT+CGG | - | chr4_1:33238451-33238470 | Msa0544540:intron | 20.0% |
| !!! | ATAACTTTTAAGATCTTCAT+TGG | + | chr4_1:33238598-33238617 | None:intergenic | 20.0% |
| !! | TATATATGAAAAGTAGATAG+TGG | - | chr4_1:33239057-33239076 | Msa0544540:intron | 20.0% |
| !! | ATATATGAAAAGTAGATAGT+GGG | - | chr4_1:33239058-33239077 | Msa0544540:intron | 20.0% |
| !!! | ATTTTCTTTTAATTGTCTTC+TGG | - | chr4_1:33239645-33239664 | Msa0544540:CDS | 20.0% |
| !!! | ATTATTGTTTTGATCGCTTT+TGG | - | chr4_1:33236929-33236948 | Msa0544540:exon | 25.0% |
| !!! | AACATAGATTGCTTTGATTT+TGG | - | chr4_1:33237493-33237512 | Msa0544540:intron | 25.0% |
| ! | GCTTTGTAATTTATTGCATT+TGG | + | chr4_1:33237623-33237642 | None:intergenic | 25.0% |
| !!! | CGAATATAAGATTTTGAGTT+AGG | - | chr4_1:33237774-33237793 | Msa0544540:intron | 25.0% |
| ! | ACTAGATACTTAGAACTATT+TGG | + | chr4_1:33238022-33238041 | None:intergenic | 25.0% |
| !!! | TTTAGTGCTACTTTCTAATT+TGG | - | chr4_1:33238182-33238201 | Msa0544540:intron | 25.0% |
| ! | ACTAGTTGATCTTAATCTTA+TGG | - | chr4_1:33238254-33238273 | Msa0544540:intron | 25.0% |
| !! | AATTTCAAGTAAAACTAAGC+CGG | - | chr4_1:33238348-33238367 | Msa0544540:intron | 25.0% |
| ! | GATATGTTACAATATTTCCT+CGG | + | chr4_1:33238393-33238412 | None:intergenic | 25.0% |
| ! | AAGCAGTTTCATATATCAAT+TGG | - | chr4_1:33238434-33238453 | Msa0544540:intron | 25.0% |
| ! | ATTGGAAATAAATTCTTGTC+GGG | - | chr4_1:33238452-33238471 | Msa0544540:intron | 25.0% |
| !! | TTAGAGCACTATATATGTAA+TGG | + | chr4_1:33238480-33238499 | None:intergenic | 25.0% |
| ! | AAAATAGATTACATGATGGT+GGG | + | chr4_1:33239102-33239121 | None:intergenic | 25.0% |
| ! | AAAAATAGATTACATGATGG+TGG | + | chr4_1:33239103-33239122 | None:intergenic | 25.0% |
| ! | ACAAATTTGAAGATTCCATT+TGG | + | chr4_1:33239163-33239182 | None:intergenic | 25.0% |
| !!! | GTACTGTTTTATTACAGTTT+AGG | - | chr4_1:33239215-33239234 | Msa0544540:intron | 25.0% |
| ! | TTGAGATCAATAAGCATATT+CGG | + | chr4_1:33239280-33239299 | None:intergenic | 25.0% |
| !!! | TACTGTAATTTTTTCTGTGA+TGG | - | chr4_1:33239505-33239524 | Msa0544540:intron | 25.0% |
| !! | TAAGATAGCAGTTTGTTTAA+TGG | - | chr4_1:33239679-33239698 | Msa0544540:CDS | 25.0% |
| ! | TAAAACTTTACATTTGCAGT+CGG | + | chr4_1:33239718-33239737 | None:intergenic | 25.0% |
| GAAAATTAGGGTTTACGATT+GGG | + | chr4_1:33236906-33236925 | None:intergenic | 30.0% | |
| TGAAAATTAGGGTTTACGAT+TGG | + | chr4_1:33236907-33236926 | None:intergenic | 30.0% | |
| TATTTGCCGTAATCATATCA+TGG | - | chr4_1:33237007-33237026 | Msa0544540:intron | 30.0% | |
| AGAGATCCATGATATGATTA+CGG | + | chr4_1:33237016-33237035 | None:intergenic | 30.0% | |
| ATTTGATATTCGTTTCGGTT+TGG | - | chr4_1:33237083-33237102 | Msa0544540:CDS | 30.0% | |
| !!! | TTGATTCGGATTTTGGTTTT+AGG | - | chr4_1:33237107-33237126 | Msa0544540:CDS | 30.0% |
| !! | ATAGGGTATTGTGTGTAATT+TGG | + | chr4_1:33237385-33237404 | None:intergenic | 30.0% |
| !!! | CAATACCCTATGTTTTTTAC+CGG | - | chr4_1:33237394-33237413 | Msa0544540:intron | 30.0% |
| TTATGCCGGTAAAAAACATA+GGG | + | chr4_1:33237402-33237421 | None:intergenic | 30.0% | |
| TTTATGCCGGTAAAAAACAT+AGG | + | chr4_1:33237403-33237422 | None:intergenic | 30.0% | |
| TAAAAAAACTACCTAGACAG+CGG | + | chr4_1:33237533-33237552 | None:intergenic | 30.0% | |
| TGCAATAAATTACAAAGCCA+AGG | - | chr4_1:33237625-33237644 | Msa0544540:intron | 30.0% | |
| ! | ATTGGTCTGTGTAAAATTGT+TGG | - | chr4_1:33237692-33237711 | Msa0544540:intron | 30.0% |
| !!! | ATTTTGAGTTAGGCTTAGTT+TGG | - | chr4_1:33237784-33237803 | Msa0544540:intron | 30.0% |
| !! | TTTTGCTTTTAAGTGACTAG+AGG | - | chr4_1:33238096-33238115 | Msa0544540:intron | 30.0% |
| !! | TTTGCTTTTAAGTGACTAGA+GGG | - | chr4_1:33238097-33238116 | Msa0544540:intron | 30.0% |
| TGTTCAATTCCTTAAACTGA+AGG | - | chr4_1:33238142-33238161 | Msa0544540:intron | 30.0% | |
| GTTCAATTCCTTAAACTGAA+GGG | - | chr4_1:33238143-33238162 | Msa0544540:intron | 30.0% | |
| !!! | GGCTTAGTTTTACTTGAAAT+TGG | + | chr4_1:33238349-33238368 | None:intergenic | 30.0% |
| ACTGCTTAAAGTTTAACTCA+TGG | + | chr4_1:33238421-33238440 | None:intergenic | 30.0% | |
| TTATAATCACTCCCTTTATG+GGG | + | chr4_1:33238656-33238675 | None:intergenic | 30.0% | |
| CTTATAATCACTCCCTTTAT+GGG | + | chr4_1:33238657-33238676 | None:intergenic | 30.0% | |
| ACTTATAATCACTCCCTTTA+TGG | + | chr4_1:33238658-33238677 | None:intergenic | 30.0% | |
| CTTCCTCAATATGAAAAAGA+GGG | + | chr4_1:33238726-33238745 | None:intergenic | 30.0% | |
| !! | CTCTTTTTCATATTGAGGAA+GGG | - | chr4_1:33238725-33238744 | Msa0544540:intron | 30.0% |
| AACTTGTACTGTCTCATTAA+GGG | + | chr4_1:33238882-33238901 | None:intergenic | 30.0% | |
| AAATGTCAACTGTGAATGAT+GGG | + | chr4_1:33238924-33238943 | None:intergenic | 30.0% | |
| GCTTATTGATCTCAATATGA+AGG | - | chr4_1:33239285-33239304 | Msa0544540:intron | 30.0% | |
| ! | TTATTTAGTTTCTGCTTACG+CGG | - | chr4_1:33239309-33239328 | Msa0544540:intron | 30.0% |
| CTCTGTGTATATCTTATACA+GGG | - | chr4_1:33239353-33239372 | Msa0544540:CDS | 30.0% | |
| TCTGTGTATATCTTATACAG+GGG | - | chr4_1:33239354-33239373 | Msa0544540:CDS | 30.0% | |
| ! | TAGATTTTCAAAAGCTAGGA+TGG | + | chr4_1:33239613-33239632 | None:intergenic | 30.0% |
| !!! | GCAGTTTGTTTAATGGATTT+TGG | - | chr4_1:33239686-33239705 | Msa0544540:CDS | 30.0% |
| !!! | GTTTGGATTGATTCGGATTT+TGG | - | chr4_1:33237100-33237119 | Msa0544540:CDS | 35.0% |
| ! | CTTTTATTAGGGTTGAAGCT+AGG | - | chr4_1:33237277-33237296 | Msa0544540:intron | 35.0% |
| TTGAAGCTAGGTCAAATTCT+AGG | - | chr4_1:33237289-33237308 | Msa0544540:intron | 35.0% | |
| CAATTAACTAGGGTTTATGC+CGG | + | chr4_1:33237416-33237435 | None:intergenic | 35.0% | |
| ACAAAAGCTTCCTGAAAAGT+TGG | + | chr4_1:33237444-33237463 | None:intergenic | 35.0% | |
| TGTGTAGTTCAAACATTCCT+TGG | + | chr4_1:33237645-33237664 | None:intergenic | 35.0% | |
| ATACTACACAAACAGTACCA+GGG | + | chr4_1:33237674-33237693 | None:intergenic | 35.0% | |
| AATACTACACAAACAGTACC+AGG | + | chr4_1:33237675-33237694 | None:intergenic | 35.0% | |
| TGGTACTGTTTGTGTAGTAT+TGG | - | chr4_1:33237674-33237693 | Msa0544540:intron | 35.0% | |
| GTCTGTGTAAAATTGTTGGT+GGG | - | chr4_1:33237696-33237715 | Msa0544540:intron | 35.0% | |
| TGTGATAGAGAAGTTAGACA+AGG | - | chr4_1:33237876-33237895 | Msa0544540:intron | 35.0% | |
| GGAAGCTTCTTAAAAGTTTG+TGG | - | chr4_1:33237897-33237916 | Msa0544540:intron | 35.0% | |
| ATTGGTATATTCTGCACGAT+TGG | + | chr4_1:33238331-33238350 | None:intergenic | 35.0% | |
| GCTTAAAGTTTAACTCATGG+TGG | + | chr4_1:33238418-33238437 | None:intergenic | 35.0% | |
| TTTATGGGGAGGATTGTAAA+GGG | + | chr4_1:33238642-33238661 | None:intergenic | 35.0% | |
| TTTACAATCCTCCCCATAAA+GGG | - | chr4_1:33238642-33238661 | Msa0544540:intron | 35.0% | |
| AAGGGAGTGATTATAAGTTG+TGG | - | chr4_1:33238660-33238679 | Msa0544540:intron | 35.0% | |
| AGGGAGTGATTATAAGTTGT+GGG | - | chr4_1:33238661-33238680 | Msa0544540:intron | 35.0% | |
| CCTTCCTCAATATGAAAAAG+AGG | + | chr4_1:33238727-33238746 | None:intergenic | 35.0% | |
| !! | CCTCTTTTTCATATTGAGGA+AGG | - | chr4_1:33238724-33238743 | Msa0544540:intron | 35.0% |
| TACAAGGAAAAGGAAAGGAA+AGG | + | chr4_1:33238773-33238792 | None:intergenic | 35.0% | |
| CATTCTACAAGGAAAAGGAA+AGG | + | chr4_1:33238778-33238797 | None:intergenic | 35.0% | |
| ! | CTTTCCTTTTCCTTGTAGAA+TGG | - | chr4_1:33238776-33238795 | Msa0544540:intron | 35.0% |
| TTATCAAGGACCTATGAACT+AGG | + | chr4_1:33238851-33238870 | None:intergenic | 35.0% | |
| ! | GTTCATAGGTCCTTGATAAT+AGG | - | chr4_1:33238852-33238871 | Msa0544540:intron | 35.0% |
| TAAGGGGTTACCTATTATCA+AGG | + | chr4_1:33238865-33238884 | None:intergenic | 35.0% | |
| ACTTGTACTGTCTCATTAAG+GGG | + | chr4_1:33238881-33238900 | None:intergenic | 35.0% | |
| CAACTTGTACTGTCTCATTA+AGG | + | chr4_1:33238883-33238902 | None:intergenic | 35.0% | |
| CAAATGTCAACTGTGAATGA+TGG | + | chr4_1:33238925-33238944 | None:intergenic | 35.0% | |
| CATCATTCACAGTTGACATT+TGG | - | chr4_1:33238923-33238942 | Msa0544540:intron | 35.0% | |
| ATTCACAGTTGACATTTGGT+GGG | - | chr4_1:33238927-33238946 | Msa0544540:intron | 35.0% | |
| ! | ATTTCTTTTGTGAAAGGGAG+AGG | + | chr4_1:33239017-33239036 | None:intergenic | 35.0% |
| TCTCCCTTTCACAAAAGAAA+TGG | - | chr4_1:33239016-33239035 | Msa0544540:intron | 35.0% | |
| ! | CCTCCATTTCTTTTGTGAAA+GGG | + | chr4_1:33239022-33239041 | None:intergenic | 35.0% |
| ! | TCCTCCATTTCTTTTGTGAA+AGG | + | chr4_1:33239023-33239042 | None:intergenic | 35.0% |
| AAAGAAATGGAGGACAACAT+TGG | - | chr4_1:33239029-33239048 | Msa0544540:intron | 35.0% | |
| ! | TATTTAGTTTCTGCTTACGC+GGG | - | chr4_1:33239310-33239329 | Msa0544540:intron | 35.0% |
| GCTCTGTGTATATCTTATAC+AGG | - | chr4_1:33239352-33239371 | Msa0544540:CDS | 35.0% | |
| ACTTCCATTGCATTAGTAGA+TGG | - | chr4_1:33239395-33239414 | Msa0544540:intron | 35.0% | |
| AAGAAGTTATGCATACCAAG+AGG | + | chr4_1:33239442-33239461 | None:intergenic | 35.0% | |
| ! | GCTGTAGATTTTCAAAAGCT+AGG | + | chr4_1:33239617-33239636 | None:intergenic | 35.0% |
| ! | GCATTTCATTTTCTGCCTTT+TGG | - | chr4_1:33239762-33239781 | Msa0544540:five_prime_UTR | 35.0% |
| ! | TTCTTGATCTCGAAGCGTTT+GGG | + | chr4_1:33236829-33236848 | None:intergenic | 40.0% |
| !! | CGTTTCGGTTTGGATTGATT+CGG | - | chr4_1:33237093-33237112 | Msa0544540:CDS | 40.0% |
| TATTGAGTGCCAAGCTAATC+AGG | - | chr4_1:33237130-33237149 | Msa0544540:intron | 40.0% | |
| AGTTTATGTCTCTACGACGA+TGG | - | chr4_1:33237333-33237352 | Msa0544540:intron | 40.0% | |
| CGGCATAAACCCTAGTTAAT+TGG | - | chr4_1:33237414-33237433 | Msa0544540:intron | 40.0% | |
| GTTGGTCGACCAATTAACTA+GGG | + | chr4_1:33237426-33237445 | None:intergenic | 40.0% | |
| AGTTGGTCGACCAATTAACT+AGG | + | chr4_1:33237427-33237446 | None:intergenic | 40.0% | |
| ! | AATTGGTCGACCAACTTTTC+AGG | - | chr4_1:33237431-33237450 | Msa0544540:intron | 40.0% |
| !! | TGTAAGTTGATCCTCCATAG+TGG | - | chr4_1:33237566-33237585 | Msa0544540:intron | 40.0% |
| TGAACTACACAAATTCTCCC+TGG | - | chr4_1:33237654-33237673 | Msa0544540:intron | 40.0% | |
| GGTCTGTGTAAAATTGTTGG+TGG | - | chr4_1:33237695-33237714 | Msa0544540:intron | 40.0% | |
| TCTTGCGTGATTCAAACTTG+TGG | - | chr4_1:33237739-33237758 | Msa0544540:intron | 40.0% | |
| ! | GTTGATGTGGCTTTTTGTGT+TGG | - | chr4_1:33238224-33238243 | Msa0544540:intron | 40.0% |
| ACGAAAACAACCTACCCTTT+GGG | + | chr4_1:33238563-33238582 | None:intergenic | 40.0% | |
| AACGAAAACAACCTACCCTT+TGG | + | chr4_1:33238564-33238583 | None:intergenic | 40.0% | |
| !! | GATCTTCATTGGCTTCAAAG+TGG | + | chr4_1:33238587-33238606 | None:intergenic | 40.0% |
| CTTTATGGGGAGGATTGTAA+AGG | + | chr4_1:33238643-33238662 | None:intergenic | 40.0% | |
| CTTTACAATCCTCCCCATAA+AGG | - | chr4_1:33238641-33238660 | Msa0544540:intron | 40.0% | |
| ATTATAAGTTGTGGGTCTCG+AGG | - | chr4_1:33238669-33238688 | Msa0544540:intron | 40.0% | |
| TATGAAAAAGAGGGCAGAGA+CGG | + | chr4_1:33238717-33238736 | None:intergenic | 40.0% | |
| !! | CTGCCCTCTTTTTCATATTG+AGG | - | chr4_1:33238720-33238739 | Msa0544540:intron | 40.0% |
| ! | TGTGCCATTCTACAAGGAAA+AGG | + | chr4_1:33238783-33238802 | None:intergenic | 40.0% |
| GAACTAGGAGCAGTACAAAT+GGG | + | chr4_1:33238836-33238855 | None:intergenic | 40.0% | |
| TGAACTAGGAGCAGTACAAA+TGG | + | chr4_1:33238837-33238856 | None:intergenic | 40.0% | |
| TTGTACTGCTCCTAGTTCAT+AGG | - | chr4_1:33238838-33238857 | Msa0544540:intron | 40.0% | |
| ! | ATGATGGGAAATGTCCAAAG+TGG | + | chr4_1:33238909-33238928 | None:intergenic | 40.0% |
| CATTCACAGTTGACATTTGG+TGG | - | chr4_1:33238926-33238945 | Msa0544540:intron | 40.0% | |
| ! | TTCACAGTTGACATTTGGTG+GGG | - | chr4_1:33238928-33238947 | Msa0544540:intron | 40.0% |
| AAAACAAGGGAGCTGAAAGA+AGG | - | chr4_1:33238958-33238977 | Msa0544540:intron | 40.0% | |
| CCCTTTCACAAAAGAAATGG+AGG | - | chr4_1:33239019-33239038 | Msa0544540:intron | 40.0% | |
| !! | TTTGTGTCTAGCTCTCCAAA+TGG | - | chr4_1:33239145-33239164 | Msa0544540:intron | 40.0% |
| TGCAATGGAAGTGAAAAGCA+TGG | + | chr4_1:33239387-33239406 | None:intergenic | 40.0% | |
| TGAGCCATCTACTAATGCAA+TGG | + | chr4_1:33239402-33239421 | None:intergenic | 40.0% | |
| CCATGTGCTTTGACTAGTAA+AGG | + | chr4_1:33239473-33239492 | None:intergenic | 40.0% | |
| CCTTTACTAGTCAAAGCACA+TGG | - | chr4_1:33239470-33239489 | Msa0544540:CDS | 40.0% | |
| GAGTGGGAGTTTCAGAAATA+CGG | - | chr4_1:33239541-33239560 | Msa0544540:intron | 40.0% | |
| ! | ATGGACTACAAAGACGTCAA+AGG | + | chr4_1:33239594-33239613 | None:intergenic | 40.0% |
| ! | TTCATTTTCTGCCTTTTGGC+TGG | - | chr4_1:33239766-33239785 | Msa0544540:five_prime_UTR | 40.0% |
| ! | CGTTTGGGTTTCTTGGAAGA+AGG | + | chr4_1:33236814-33236833 | None:intergenic | 45.0% |
| ! | CTTCTTGATCTCGAAGCGTT+TGG | + | chr4_1:33236830-33236849 | None:intergenic | 45.0% |
| AACGCTTCGAGATCAAGAAG+TGG | - | chr4_1:33236830-33236849 | Msa0544540:three_prime_UTR | 45.0% | |
| ! | TAGCACTAGCCTGATTAGCT+TGG | + | chr4_1:33237142-33237161 | None:intergenic | 45.0% |
| TTATGTCTCTACGACGATGG+TGG | - | chr4_1:33237336-33237355 | Msa0544540:intron | 45.0% | |
| CAAGCAAATATCCGCTGTCT+AGG | - | chr4_1:33237519-33237538 | Msa0544540:intron | 45.0% | |
| TAATCGTGACACAGCCACTA+TGG | + | chr4_1:33237583-33237602 | None:intergenic | 45.0% | |
| GTAGGGTTCCCTTCAGTTTA+AGG | + | chr4_1:33238154-33238173 | None:intergenic | 45.0% | |
| !! | GCCAATGCTTCAAGTTGATG+TGG | - | chr4_1:33238211-33238230 | Msa0544540:intron | 45.0% |
| GCCACATCAACTTGAAGCAT+TGG | + | chr4_1:33238215-33238234 | None:intergenic | 45.0% | |
| CGAAGAGTTCGGATTGTATC+CGG | + | chr4_1:33238370-33238389 | None:intergenic | 45.0% | |
| TATTTCCTCGGCGAAGAGTT+CGG | + | chr4_1:33238381-33238400 | None:intergenic | 45.0% | |
| AATAGCCTAAGCAGACCCAA+AGG | - | chr4_1:33238545-33238564 | Msa0544540:intron | 45.0% | |
| ATAGCCTAAGCAGACCCAAA+GGG | - | chr4_1:33238546-33238565 | Msa0544540:intron | 45.0% | |
| TGTAAAGGGAGGAAGTGAAC+TGG | + | chr4_1:33238628-33238647 | None:intergenic | 45.0% | |
| TAATCACTCCCTTTATGGGG+AGG | + | chr4_1:33238653-33238672 | None:intergenic | 45.0% | |
| ATGAAAAAGAGGGCAGAGAC+GGG | + | chr4_1:33238716-33238735 | None:intergenic | 45.0% | |
| ! | CTCTTGTGTGCCATTCTACA+AGG | + | chr4_1:33238789-33238808 | None:intergenic | 45.0% |
| AGTACAAGTTGCCACCACTT+TGG | - | chr4_1:33238892-33238911 | Msa0544540:intron | 45.0% | |
| ATGGGAAATGTCCAAAGTGG+TGG | + | chr4_1:33238906-33238925 | None:intergenic | 45.0% | |
| ! | GTGGGGCACTCATAAAACAA+GGG | - | chr4_1:33238945-33238964 | Msa0544540:intron | 45.0% |
| CTGAAAGAAGGCAATCAAGC+TGG | - | chr4_1:33238970-33238989 | Msa0544540:intron | 45.0% | |
| ! | TAGTGGGTCCTATTACCAAG+TGG | - | chr4_1:33239074-33239093 | Msa0544540:intron | 45.0% |
| AGTGGGTCCTATTACCAAGT+GGG | - | chr4_1:33239075-33239094 | Msa0544540:intron | 45.0% | |
| ATGGTACAGACAACAGTGAG+TGG | - | chr4_1:33239524-33239543 | Msa0544540:intron | 45.0% | |
| TGGTACAGACAACAGTGAGT+GGG | - | chr4_1:33239525-33239544 | Msa0544540:intron | 45.0% | |
| AATTCACACAGCCAGCCAAA+AGG | + | chr4_1:33239780-33239799 | None:intergenic | 45.0% | |
| ACTCGATTCCGACGTAACCA+TGG | - | chr4_1:33236753-33236772 | Msa0544540:three_prime_UTR | 50.0% | |
| TTTCTTGGAAGAAGGACCGG+CGG | + | chr4_1:33236806-33236825 | None:intergenic | 50.0% | |
| GGGTTTCTTGGAAGAAGGAC+CGG | + | chr4_1:33236809-33236828 | None:intergenic | 50.0% | |
| ! | CTCGAAGCGTTTGGGTTTCT+TGG | + | chr4_1:33236821-33236840 | None:intergenic | 50.0% |
| ! | CGAGGAATGCACTGTTGCTT+GGG | - | chr4_1:33237166-33237185 | Msa0544540:intron | 50.0% |
| ! | GAGGAATGCACTGTTGCTTG+GGG | - | chr4_1:33237167-33237186 | Msa0544540:intron | 50.0% |
| ATGGGGAGGATTGTAAAGGG+AGG | + | chr4_1:33238639-33238658 | None:intergenic | 50.0% | |
| ! | GGTGGGGCACTCATAAAACA+AGG | - | chr4_1:33238944-33238963 | Msa0544540:intron | 50.0% |
| AGGGAGAGGATTCAAACTCG+TGG | + | chr4_1:33239003-33239022 | None:intergenic | 50.0% | |
| ACTCGTCAAGTGTGTCCTCT+TGG | - | chr4_1:33239424-33239443 | Msa0544540:intron | 50.0% | |
| CCACCATGTCAACGAACTAG+TGG | + | chr4_1:33239567-33239586 | None:intergenic | 50.0% | |
| CCACTAGTTCGTTGACATGG+TGG | - | chr4_1:33239564-33239583 | Msa0544540:intron | 50.0% | |
| AGTGGAACGCTGTTGCTCTC+TGG | - | chr4_1:33236848-33236867 | Msa0544540:three_prime_UTR | 55.0% | |
| GTGGAACGCTGTTGCTCTCT+GGG | - | chr4_1:33236849-33236868 | Msa0544540:three_prime_UTR | 55.0% | |
| ! | TCAGGCTAGTGCTACTAGCG+AGG | - | chr4_1:33237148-33237167 | Msa0544540:intron | 55.0% |
| GCGAGGAATGCACTGTTGCT+TGG | - | chr4_1:33237165-33237184 | Msa0544540:intron | 55.0% | |
| TCGTGACACAGCCACTATGG+AGG | + | chr4_1:33237580-33237599 | None:intergenic | 55.0% | |
| ACAATCCGAACTCTTCGCCG+AGG | - | chr4_1:33238373-33238392 | Msa0544540:intron | 55.0% | |
| CCTACCCTTTGGGTCTGCTT+AGG | + | chr4_1:33238553-33238572 | None:intergenic | 55.0% | |
| CCTAAGCAGACCCAAAGGGT+AGG | - | chr4_1:33238550-33238569 | Msa0544540:intron | 55.0% | |
| ! | GGTGGGACCCACTTGGTAAT+AGG | + | chr4_1:33239085-33239104 | None:intergenic | 55.0% |
| !! | ACATGATGGTGGGACCCACT+TGG | + | chr4_1:33239092-33239111 | None:intergenic | 55.0% |
| CGGCCACTAGTTCGTTGACA+TGG | - | chr4_1:33239561-33239580 | Msa0544540:intron | 55.0% | |
| GGCGGGAACCATGGTTACGT+CGG | + | chr4_1:33236764-33236783 | None:intergenic | 60.0% | |
| GACGTAACCATGGTTCCCGC+CGG | - | chr4_1:33236763-33236782 | Msa0544540:three_prime_UTR | 60.0% | |
| ACGCTGTTGCTCTCTGGGCT+TGG | - | chr4_1:33236854-33236873 | Msa0544540:three_prime_UTR | 60.0% | |
| CGCTGTTGCTCTCTGGGCTT+GGG | - | chr4_1:33236855-33236874 | Msa0544540:three_prime_UTR | 60.0% | |
| GCTGTTGCTCTCTGGGCTTG+GGG | - | chr4_1:33236856-33236875 | Msa0544540:three_prime_UTR | 60.0% | |
| AAAGAGGGCAGAGACGGGAG+AGG | + | chr4_1:33238711-33238730 | None:intergenic | 60.0% | |
| CTGCTTGAAGGTTCGCCGGC+GGG | + | chr4_1:33236781-33236800 | None:intergenic | 65.0% | |
| GCTGCTTGAAGGTTCGCCGG+CGG | + | chr4_1:33236782-33236801 | None:intergenic | 65.0% | |
| GGCGCTGCTTGAAGGTTCGC+CGG | + | chr4_1:33236785-33236804 | None:intergenic | 65.0% | |
| GAACCTTCAAGCAGCGCCGC+CGG | - | chr4_1:33236787-33236806 | Msa0544540:three_prime_UTR | 65.0% | |
| AGGTTCGCCGGCGGGAACCA+TGG | + | chr4_1:33236773-33236792 | None:intergenic | 70.0% | |
| GGACCGGCGGCGCTGCTTGA+AGG | + | chr4_1:33236793-33236812 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 33236682 | 33239820 | 33236682 | ID=Msa0544540;Name=Msa0544540 |
| chr4_1 | mRNA | 33236682 | 33239820 | 33236682 | ID=Msa0544540-mRNA-1;Parent=Msa0544540;Name=Msa0544540-mRNA-1;_AED=0.19;_eAED=0.19;_QI=63|1|1|1|1|1|5|250|117 |
| chr4_1 | exon | 33236682 | 33236969 | 33236682 | ID=Msa0544540-mRNA-1:exon:8511;Parent=Msa0544540-mRNA-1 |
| chr4_1 | exon | 33237057 | 33237128 | 33237057 | ID=Msa0544540-mRNA-1:exon:8510;Parent=Msa0544540-mRNA-1 |
| chr4_1 | exon | 33239314 | 33239373 | 33239314 | ID=Msa0544540-mRNA-1:exon:8509;Parent=Msa0544540-mRNA-1 |
| chr4_1 | exon | 33239467 | 33239517 | 33239467 | ID=Msa0544540-mRNA-1:exon:8508;Parent=Msa0544540-mRNA-1 |
| chr4_1 | exon | 33239625 | 33239820 | 33239625 | ID=Msa0544540-mRNA-1:exon:8507;Parent=Msa0544540-mRNA-1 |
| chr4_1 | five_prime_UTR | 33239758 | 33239820 | 33239758 | ID=Msa0544540-mRNA-1:five_prime_utr;Parent=Msa0544540-mRNA-1 |
| chr4_1 | CDS | 33239625 | 33239757 | 33239625 | ID=Msa0544540-mRNA-1:cds;Parent=Msa0544540-mRNA-1 |
| chr4_1 | CDS | 33239467 | 33239517 | 33239467 | ID=Msa0544540-mRNA-1:cds;Parent=Msa0544540-mRNA-1 |
| chr4_1 | CDS | 33239314 | 33239373 | 33239314 | ID=Msa0544540-mRNA-1:cds;Parent=Msa0544540-mRNA-1 |
| chr4_1 | CDS | 33237057 | 33237128 | 33237057 | ID=Msa0544540-mRNA-1:cds;Parent=Msa0544540-mRNA-1 |
| chr4_1 | CDS | 33236932 | 33236969 | 33236932 | ID=Msa0544540-mRNA-1:cds;Parent=Msa0544540-mRNA-1 |
| chr4_1 | three_prime_UTR | 33236682 | 33236931 | 33236682 | ID=Msa0544540-mRNA-1:three_prime_utr;Parent=Msa0544540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
