Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600490 | XP_013443384.1 | 98.374 | 369 | 6 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600490 | sp|Q6WUC2|7OMT_PAPSO | 49.575 | 353 | 169 | 5 | 22 | 368 | 5 | 354 | 7.08e-124 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0542320 | Msa0600490 | 0.828509 | 8.641003e-55 | -8.615850e-47 |
| Msa0600490 | Msa0677450 | 0.824515 | 7.740807e-54 | -8.615850e-47 |
| Msa0600490 | Msa0677470 | 0.810911 | 9.108478e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600490 | MtrunA17_Chr4g0022021 | 98.374 | 369 | 6 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Msa0600490 | MtrunA17_Chr4g0021981 | 87.534 | 369 | 46 | 0 | 1 | 369 | 1 | 369 | 0.0 | 684 |
| Msa0600490 | MtrunA17_Chr3g0121301 | 41.056 | 341 | 188 | 6 | 31 | 366 | 27 | 359 | 1.04e-87 | 269 |
| Msa0600490 | MtrunA17_Chr5g0432251 | 41.595 | 351 | 193 | 8 | 25 | 368 | 14 | 359 | 4.14e-79 | 246 |
| Msa0600490 | MtrunA17_Chr5g0432301 | 38.968 | 349 | 203 | 7 | 25 | 367 | 15 | 359 | 1.15e-75 | 238 |
| Msa0600490 | MtrunA17_Chr7g0276401 | 39.178 | 365 | 202 | 10 | 15 | 367 | 18 | 374 | 6.13e-74 | 234 |
| Msa0600490 | MtrunA17_Chr5g0432241 | 37.569 | 362 | 211 | 7 | 18 | 368 | 3 | 360 | 1.14e-70 | 225 |
| Msa0600490 | MtrunA17_Chr7g0276411 | 36.628 | 344 | 195 | 12 | 22 | 349 | 7 | 343 | 4.57e-70 | 223 |
| Msa0600490 | MtrunA17_Chr3g0128011 | 37.798 | 336 | 187 | 11 | 44 | 367 | 90 | 415 | 4.90e-70 | 225 |
| Msa0600490 | MtrunA17_Chr8g0345851 | 45.935 | 246 | 124 | 6 | 107 | 349 | 32 | 271 | 1.55e-66 | 212 |
| Msa0600490 | MtrunA17_Chr5g0448091 | 36.875 | 320 | 188 | 8 | 44 | 354 | 35 | 349 | 1.37e-65 | 212 |
| Msa0600490 | MtrunA17_Chr1g0188391 | 36.490 | 359 | 212 | 9 | 20 | 368 | 9 | 361 | 3.57e-65 | 211 |
| Msa0600490 | MtrunA17_Chr7g0219141 | 34.483 | 377 | 218 | 9 | 1 | 368 | 1 | 357 | 2.82e-64 | 208 |
| Msa0600490 | MtrunA17_Chr8g0367491 | 35.380 | 342 | 198 | 11 | 34 | 358 | 33 | 368 | 6.68e-63 | 205 |
| Msa0600490 | MtrunA17_Chr5g0432211 | 36.158 | 354 | 194 | 7 | 25 | 368 | 14 | 345 | 1.67e-62 | 203 |
| Msa0600490 | MtrunA17_Chr5g0432261 | 36.390 | 349 | 186 | 8 | 25 | 368 | 10 | 327 | 5.72e-62 | 201 |
| Msa0600490 | MtrunA17_Chr4g0040621 | 34.746 | 354 | 210 | 7 | 25 | 368 | 27 | 369 | 1.41e-61 | 202 |
| Msa0600490 | MtrunA17_Chr7g0219161 | 36.023 | 347 | 202 | 9 | 18 | 354 | 7 | 343 | 7.11e-61 | 199 |
| Msa0600490 | MtrunA17_Chr8g0367441 | 34.247 | 365 | 213 | 13 | 5 | 349 | 1 | 358 | 2.45e-59 | 196 |
| Msa0600490 | MtrunA17_Chr7g0223231 | 34.104 | 346 | 216 | 7 | 23 | 365 | 11 | 347 | 4.57e-59 | 194 |
| Msa0600490 | MtrunA17_Chr7g0223241 | 35.191 | 341 | 209 | 7 | 28 | 365 | 16 | 347 | 8.31e-59 | 194 |
| Msa0600490 | MtrunA17_Chr4g0046361 | 32.692 | 364 | 233 | 8 | 13 | 368 | 2 | 361 | 2.08e-57 | 191 |
| Msa0600490 | MtrunA17_Chr8g0367451 | 33.913 | 345 | 208 | 10 | 20 | 353 | 26 | 361 | 2.32e-57 | 191 |
| Msa0600490 | MtrunA17_Chr8g0367501 | 34.311 | 341 | 204 | 11 | 20 | 349 | 13 | 344 | 7.70e-57 | 191 |
| Msa0600490 | MtrunA17_Chr4g0014641 | 33.973 | 365 | 227 | 8 | 14 | 368 | 3 | 363 | 7.10e-56 | 187 |
| Msa0600490 | MtrunA17_Chr1g0188371 | 35.015 | 337 | 206 | 9 | 20 | 348 | 9 | 340 | 1.02e-55 | 187 |
| Msa0600490 | MtrunA17_Chr3g0085211 | 35.625 | 320 | 192 | 10 | 44 | 355 | 43 | 356 | 2.67e-55 | 185 |
| Msa0600490 | MtrunA17_Chr4g0046531 | 33.618 | 351 | 222 | 7 | 23 | 368 | 374 | 718 | 2.47e-53 | 187 |
| Msa0600490 | MtrunA17_Chr4g0046531 | 32.578 | 353 | 225 | 7 | 23 | 369 | 12 | 357 | 2.77e-51 | 182 |
| Msa0600490 | MtrunA17_Chr4g0014561 | 33.983 | 359 | 223 | 8 | 20 | 368 | 9 | 363 | 3.54e-53 | 179 |
| Msa0600490 | MtrunA17_Chr4g0046341 | 34.332 | 367 | 226 | 8 | 13 | 368 | 2 | 364 | 1.28e-52 | 178 |
| Msa0600490 | MtrunA17_Chr4g0014681 | 33.705 | 359 | 224 | 8 | 20 | 368 | 9 | 363 | 1.73e-52 | 178 |
| Msa0600490 | MtrunA17_Chr7g0218261 | 33.731 | 335 | 204 | 12 | 44 | 367 | 40 | 367 | 9.59e-52 | 176 |
| Msa0600490 | MtrunA17_Chr1g0163621 | 33.746 | 323 | 196 | 10 | 44 | 354 | 52 | 368 | 1.13e-51 | 176 |
| Msa0600490 | MtrunA17_Chr3g0130011 | 32.865 | 356 | 226 | 9 | 16 | 365 | 7 | 355 | 1.89e-51 | 175 |
| Msa0600490 | MtrunA17_Chr8g0367381 | 33.033 | 333 | 185 | 9 | 19 | 337 | 19 | 327 | 2.33e-51 | 174 |
| Msa0600490 | MtrunA17_Chr2g0307521 | 35.119 | 336 | 198 | 13 | 44 | 367 | 35 | 362 | 2.75e-51 | 175 |
| Msa0600490 | MtrunA17_Chr7g0218211 | 33.432 | 338 | 204 | 12 | 43 | 367 | 39 | 368 | 5.06e-51 | 174 |
| Msa0600490 | MtrunA17_Chr3g0085201 | 33.125 | 320 | 200 | 9 | 44 | 355 | 30 | 343 | 2.01e-50 | 172 |
| Msa0600490 | MtrunA17_Chr1g0163601 | 34.056 | 323 | 195 | 10 | 44 | 354 | 38 | 354 | 2.48e-50 | 172 |
| Msa0600490 | MtrunA17_Chr1g0163611 | 32.840 | 338 | 207 | 11 | 44 | 367 | 38 | 369 | 3.86e-50 | 172 |
| Msa0600490 | MtrunA17_Chr7g0218181 | 33.851 | 322 | 194 | 11 | 44 | 355 | 41 | 353 | 9.19e-50 | 171 |
| Msa0600490 | MtrunA17_Chr7g0218301 | 32.353 | 340 | 208 | 10 | 44 | 367 | 41 | 374 | 1.23e-49 | 171 |
| Msa0600490 | MtrunA17_Chr2g0314271 | 33.623 | 345 | 218 | 9 | 27 | 365 | 12 | 351 | 1.25e-49 | 170 |
| Msa0600490 | MtrunA17_Chr7g0218271 | 32.941 | 340 | 206 | 10 | 44 | 367 | 41 | 374 | 2.18e-49 | 170 |
| Msa0600490 | MtrunA17_Chr1g0200491 | 34.862 | 327 | 187 | 12 | 44 | 354 | 41 | 357 | 3.27e-49 | 169 |
| Msa0600490 | MtrunA17_Chr7g0218131 | 33.230 | 322 | 197 | 10 | 44 | 354 | 41 | 355 | 9.86e-48 | 166 |
| Msa0600490 | MtrunA17_Chr4g0014661 | 32.231 | 363 | 230 | 8 | 14 | 368 | 3 | 357 | 2.34e-47 | 164 |
| Msa0600490 | MtrunA17_Chr3g0130061 | 30.899 | 356 | 233 | 9 | 16 | 365 | 7 | 355 | 1.99e-46 | 162 |
| Msa0600490 | MtrunA17_Chr4g0014591 | 31.667 | 360 | 236 | 7 | 14 | 368 | 3 | 357 | 4.86e-44 | 155 |
| Msa0600490 | MtrunA17_Chr6g0482291 | 42.073 | 164 | 82 | 5 | 188 | 349 | 5 | 157 | 2.71e-37 | 132 |
| Msa0600490 | MtrunA17_Chr7g0219171 | 45.522 | 134 | 68 | 3 | 238 | 368 | 117 | 248 | 3.38e-32 | 121 |
| Msa0600490 | MtrunA17_Chr4g0014601 | 30.268 | 261 | 178 | 4 | 14 | 273 | 3 | 260 | 6.78e-29 | 113 |
| Msa0600490 | MtrunA17_Chr8g0367401 | 47.273 | 110 | 57 | 1 | 161 | 270 | 2 | 110 | 2.04e-28 | 108 |
| Msa0600490 | MtrunA17_Chr4g0011691 | 44.792 | 96 | 53 | 0 | 272 | 367 | 140 | 235 | 3.09e-25 | 102 |
| Msa0600490 | MtrunA17_Chr1g0170941 | 52.632 | 76 | 35 | 1 | 192 | 267 | 1 | 75 | 2.12e-20 | 84.3 |
| Msa0600490 | MtrunA17_Chr8g0367461 | 44.681 | 94 | 50 | 2 | 257 | 349 | 1 | 93 | 1.99e-19 | 82.8 |
| Msa0600490 | MtrunA17_Chr8g0367391 | 45.349 | 86 | 43 | 4 | 266 | 349 | 32 | 115 | 1.61e-15 | 72.8 |
| Msa0600490 | MtrunA17_Chr8g0367421 | 37.273 | 110 | 51 | 2 | 161 | 270 | 2 | 93 | 2.01e-15 | 72.4 |
| Msa0600490 | MtrunA17_Chr8g0367471 | 44.444 | 72 | 39 | 1 | 188 | 259 | 5 | 75 | 1.38e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600490 | AT5G54160.1 | 37.500 | 320 | 189 | 6 | 42 | 355 | 34 | 348 | 5.10e-74 | 234 |
| Msa0600490 | AT4G35160.1 | 37.293 | 362 | 206 | 6 | 22 | 367 | 24 | 380 | 2.56e-72 | 230 |
| Msa0600490 | AT1G77520.1 | 35.967 | 367 | 212 | 10 | 17 | 365 | 17 | 378 | 5.06e-64 | 209 |
| Msa0600490 | AT4G35150.1 | 32.303 | 356 | 189 | 6 | 22 | 367 | 10 | 323 | 2.15e-59 | 195 |
| Msa0600490 | AT1G51990.1 | 32.970 | 367 | 220 | 12 | 16 | 368 | 8 | 362 | 4.90e-58 | 192 |
| Msa0600490 | AT1G51990.2 | 32.698 | 367 | 221 | 12 | 16 | 368 | 8 | 362 | 1.72e-55 | 186 |
| Msa0600490 | AT1G77530.1 | 34.465 | 383 | 224 | 13 | 5 | 365 | 1 | 378 | 4.95e-55 | 185 |
| Msa0600490 | AT1G63140.2 | 35.040 | 371 | 218 | 10 | 11 | 365 | 15 | 378 | 5.75e-55 | 185 |
| Msa0600490 | AT1G63140.4 | 35.040 | 371 | 218 | 10 | 11 | 365 | 35 | 398 | 9.24e-55 | 185 |
| Msa0600490 | AT1G33030.1 | 35.329 | 334 | 195 | 12 | 44 | 365 | 23 | 347 | 8.47e-53 | 179 |
| Msa0600490 | AT5G53810.1 | 34.018 | 341 | 203 | 9 | 44 | 367 | 42 | 377 | 2.68e-51 | 176 |
| Msa0600490 | AT3G53140.1 | 32.857 | 350 | 219 | 10 | 27 | 365 | 12 | 356 | 4.08e-48 | 167 |
| Msa0600490 | AT1G62900.1 | 44.776 | 201 | 107 | 3 | 167 | 365 | 4 | 202 | 4.25e-48 | 162 |
| Msa0600490 | AT5G37170.2 | 36.481 | 233 | 141 | 5 | 138 | 365 | 1 | 231 | 1.21e-47 | 162 |
| Msa0600490 | AT1G21130.1 | 36.646 | 322 | 179 | 12 | 44 | 349 | 42 | 354 | 1.64e-47 | 166 |
| Msa0600490 | AT1G21100.1 | 36.335 | 322 | 180 | 11 | 44 | 349 | 42 | 354 | 2.98e-47 | 165 |
| Msa0600490 | AT5G37170.1 | 32.468 | 308 | 177 | 9 | 63 | 365 | 50 | 331 | 2.13e-46 | 161 |
| Msa0600490 | AT1G21120.1 | 35.714 | 322 | 182 | 11 | 44 | 349 | 42 | 354 | 1.28e-45 | 160 |
| Msa0600490 | AT1G21110.1 | 34.451 | 328 | 190 | 11 | 44 | 355 | 42 | 360 | 3.65e-45 | 159 |
| Msa0600490 | AT1G21120.2 | 35.714 | 322 | 182 | 11 | 44 | 349 | 90 | 402 | 4.74e-45 | 160 |
| Msa0600490 | AT1G76790.1 | 34.897 | 341 | 191 | 12 | 45 | 365 | 33 | 362 | 5.41e-44 | 156 |
| Msa0600490 | AT5G37170.3 | 40.110 | 182 | 104 | 4 | 187 | 365 | 4 | 183 | 1.96e-42 | 146 |
| Msa0600490 | AT1G33030.2 | 34.599 | 237 | 138 | 9 | 44 | 270 | 23 | 252 | 4.51e-28 | 111 |
| Msa0600490 | AT1G33030.3 | 34.599 | 237 | 138 | 9 | 44 | 270 | 23 | 252 | 9.03e-28 | 110 |
| Msa0600490 | AT1G63140.1 | 31.752 | 274 | 167 | 8 | 11 | 270 | 35 | 302 | 1.61e-27 | 110 |
| Msa0600490 | AT1G21130.2 | 34.025 | 241 | 137 | 10 | 44 | 270 | 42 | 274 | 5.82e-22 | 95.1 |
| Msa0600490 | AT1G63140.3 | 29.644 | 253 | 158 | 8 | 11 | 249 | 35 | 281 | 4.94e-18 | 84.0 |
| Msa0600490 | AT1G77530.2 | 30.566 | 265 | 160 | 11 | 5 | 249 | 1 | 261 | 7.06e-18 | 83.2 |
Find 91 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCACCTTCTGCCTTTA+AGG | 0.035762 | 4_2:-41971852 | Msa0600490:intron |
| TTAAACAACTCATTGAATTT+TGG | 0.113417 | 4_2:+41968831 | None:intergenic |
| CATCAACCAATGTTTGAATT+TGG | 0.182200 | 4_2:+41968739 | None:intergenic |
| ATTTCACTCATAAAGTTAAA+AGG | 0.207818 | 4_2:+41968933 | None:intergenic |
| TGCTTGGACAAATTGAAATA+TGG | 0.256837 | 4_2:-41969277 | Msa0600490:CDS |
| TCAACATCCACGCACCTTAA+AGG | 0.284260 | 4_2:+41971838 | None:intergenic |
| AAAATGGCACTGCTTTCTTT+AGG | 0.298524 | 4_2:-41968893 | Msa0600490:CDS |
| ATGTGTTGTGTGACTTTACT+TGG | 0.299093 | 4_2:-41966756 | Msa0600490:three_prime_UTR |
| ATTAGTTAAGTGAAATAAAA+AGG | 0.312067 | 4_2:+41966531 | None:intergenic |
| GCTATGCCAATGTCAGTAAA+TGG | 0.312596 | 4_2:+41966986 | None:intergenic |
| GTTGATGTTGGTGGTGGTAT+TGG | 0.312678 | 4_2:-41968723 | Msa0600490:CDS |
| GCTTGACACGTGCATCAAAA+TGG | 0.313818 | 4_2:-41969025 | Msa0600490:CDS |
| CAACACTAGCCATTTCAAAT+TGG | 0.315929 | 4_2:+41968856 | None:intergenic |
| GGCAGAAGGTGGAGAGTGAT+TGG | 0.355201 | 4_2:+41971859 | None:intergenic |
| ATTCTGCACAATTTGAGTTA+AGG | 0.365186 | 4_2:+41969160 | None:intergenic |
| GTAAATGGTTCATCTCCTTC+TGG | 0.366037 | 4_2:+41967001 | None:intergenic |
| AACAGGAAAGGTGATAATAT+TGG | 0.375818 | 4_2:-41967038 | Msa0600490:CDS |
| GAAAATCATAATGAGTTTGT+TGG | 0.386525 | 4_2:-41966808 | Msa0600490:three_prime_UTR |
| GTGTTTAGAGCTGTTATTGC+TGG | 0.403865 | 4_2:-41968780 | Msa0600490:CDS |
| GATTGGAAATGCTTCAATGA+TGG | 0.406919 | 4_2:+41966838 | None:intergenic |
| AAAGGACAAGCATGCACAAC+TGG | 0.416268 | 4_2:-41968807 | Msa0600490:CDS |
| TGGTTATGACCAATTTGAAA+TGG | 0.426665 | 4_2:-41968865 | Msa0600490:CDS |
| GATAATATTGGATCATGTAT+TGG | 0.435063 | 4_2:-41967026 | Msa0600490:CDS |
| CTTAAAAGTAGAGTGGAATC+AGG | 0.438559 | 4_2:+41969119 | None:intergenic |
| ATGAGTGAAATTGTAAAAGA+AGG | 0.441259 | 4_2:-41968921 | Msa0600490:CDS |
| TTAAAAGGGTTCATATGAGT+TGG | 0.444485 | 4_2:+41968948 | None:intergenic |
| TTTCACTCATAAAGTTAAAA+GGG | 0.448814 | 4_2:+41968934 | None:intergenic |
| CTAACAGTGTAACAATTAGA+AGG | 0.449944 | 4_2:+41966503 | None:intergenic |
| ACTGCTTTCTTTAGGTGTCA+TGG | 0.450664 | 4_2:-41968885 | Msa0600490:CDS |
| ATGGGTGATGCCATCATACT+TGG | 0.452889 | 4_2:+41968617 | None:intergenic |
| TAAAAGGGTTCATATGAGTT+GGG | 0.453853 | 4_2:+41968949 | None:intergenic |
| CTCACACAACAATCTGCATA+TGG | 0.465615 | 4_2:+41966622 | None:intergenic |
| GTTATTGCTGGATACAAAGA+TGG | 0.468883 | 4_2:-41968768 | Msa0600490:CDS |
| GCAAATCAAAATTAATACCT+TGG | 0.471241 | 4_2:+41968661 | None:intergenic |
| AAGGCAATACCAGAGAAAAC+AGG | 0.476074 | 4_2:-41967055 | Msa0600490:CDS |
| AGGAAAGGACTGAAGAGAAC+TGG | 0.477263 | 4_2:-41966925 | Msa0600490:CDS |
| AAAAGTGACATTGGCACCAT+TGG | 0.485135 | 4_2:-41968988 | Msa0600490:CDS |
| GATGAACCATTTACTGACAT+TGG | 0.495764 | 4_2:-41966992 | Msa0600490:CDS |
| TGCACACAACTCTGGTGGTA+AGG | 0.502617 | 4_2:-41966945 | Msa0600490:CDS |
| GAACATGTCTCCTCCAACAT+GGG | 0.506646 | 4_2:+41968599 | None:intergenic |
| GATGTTGGTGGTGGTATTGG+CGG | 0.508464 | 4_2:-41968720 | Msa0600490:CDS |
| TTTAAGAGTAATGAGAGTAA+TGG | 0.509813 | 4_2:-41969102 | Msa0600490:CDS |
| AGATACTTATTCAAAGAGAC+AGG | 0.514708 | 4_2:-41966902 | Msa0600490:CDS |
| GGTAGTGGATTCTTCATGAC+TGG | 0.515619 | 4_2:-41967117 | Msa0600490:intron |
| ATTTAACCAAATTCAAACAT+TGG | 0.521052 | 4_2:-41968745 | Msa0600490:CDS |
| TTCAATGAGTTGTTTAACAA+AGG | 0.521127 | 4_2:-41968825 | Msa0600490:CDS |
| CTAGGGTGTGAGCAAGGAAG+AGG | 0.523226 | 4_2:-41969309 | Msa0600490:intron |
| CAAACATTGGTTGATGTTGG+TGG | 0.526942 | 4_2:-41968732 | Msa0600490:CDS |
| AGCTAGTTATGATTCATGCA+TGG | 0.529631 | 4_2:-41966660 | Msa0600490:three_prime_UTR |
| ATTCAAACATTGGTTGATGT+TGG | 0.530112 | 4_2:-41968735 | Msa0600490:CDS |
| TCTTCAATATCTTTATGCAA+TGG | 0.534210 | 4_2:+41967086 | None:intergenic |
| TAAAGATATTGAAGAACTGT+AGG | 0.535387 | 4_2:-41967078 | Msa0600490:CDS |
| TGCTGATGCTATTTACATCA+AGG | 0.535867 | 4_2:-41968562 | Msa0600490:intron |
| CGAACATGTCTCCTCCAACA+TGG | 0.536309 | 4_2:+41968598 | None:intergenic |
| AATTAATACCTTGGATGTGA+GGG | 0.541352 | 4_2:+41968670 | None:intergenic |
| TCAACGGCACCCAAGTATGA+TGG | 0.541751 | 4_2:-41968627 | Msa0600490:CDS |
| AAGTAGAGTGGAATCAGGAG+AGG | 0.545001 | 4_2:+41969124 | None:intergenic |
| GAAGAGGAGGAATCATTGCT+TGG | 0.551152 | 4_2:-41969293 | Msa0600490:CDS |
| TTTGCCTCATGTTGTTTCAA+CGG | 0.559425 | 4_2:-41968643 | Msa0600490:CDS |
| AAATTAATACCTTGGATGTG+AGG | 0.559777 | 4_2:+41968669 | None:intergenic |
| GATGGCATCACCCATGTTGG+AGG | 0.561480 | 4_2:-41968609 | Msa0600490:CDS |
| GCTAGTTATGATTCATGCAT+GGG | 0.561936 | 4_2:-41966659 | Msa0600490:three_prime_UTR |
| ATATTGTTTGCACACAACTC+TGG | 0.563913 | 4_2:-41966953 | Msa0600490:CDS |
| TATGATGGCATCACCCATGT+TGG | 0.578808 | 4_2:-41968612 | Msa0600490:CDS |
| TTATTGAGATTATGATACAA+TGG | 0.586491 | 4_2:+41966703 | None:intergenic |
| ACAAGACACAAAAGTGACAT+TGG | 0.586673 | 4_2:-41968997 | Msa0600490:CDS |
| GGGTGTGAGCAAGGAAGAGG+AGG | 0.586759 | 4_2:-41969306 | Msa0600490:CDS |
| CATTACTCTTAAAAGTAGAG+TGG | 0.588009 | 4_2:+41969112 | None:intergenic |
| ATGTAAATAGCATCAGCACT+AGG | 0.594614 | 4_2:+41968567 | None:intergenic |
| GATATTGAAGAACTGTAGGA+AGG | 0.597258 | 4_2:-41967074 | Msa0600490:CDS |
| TGAATCATAACTAGCTCTAG+AGG | 0.601190 | 4_2:+41966667 | None:intergenic |
| ACATTGGTTGATGTTGGTGG+TGG | 0.602342 | 4_2:-41968729 | Msa0600490:CDS |
| AGGATAGCGGTTTACACTGA+CGG | 0.604044 | 4_2:+41969180 | None:intergenic |
| AGTGTAACAATTAGAAGGAG+AGG | 0.608263 | 4_2:+41966508 | None:intergenic |
| CGCACCTTAAAGGCAGAAGG+TGG | 0.612114 | 4_2:+41971848 | None:intergenic |
| AGTAGAGTGGAATCAGGAGA+GGG | 0.613280 | 4_2:+41969125 | None:intergenic |
| AAAGCTTACCCTCACATCCA+AGG | 0.615664 | 4_2:-41968678 | Msa0600490:CDS |
| ACAACTCTGGTGGTAAGGAA+AGG | 0.616165 | 4_2:-41966940 | Msa0600490:CDS |
| AAATGACTAGGGTGTGAGCA+AGG | 0.619206 | 4_2:-41969315 | Msa0600490:intron |
| ACAATTTGAGTTAAGGATAG+CGG | 0.620633 | 4_2:+41969167 | None:intergenic |
| TTGTTTGCACACAACTCTGG+TGG | 0.628395 | 4_2:-41966950 | Msa0600490:CDS |
| CCACGCACCTTAAAGGCAGA+AGG | 0.632006 | 4_2:+41971845 | None:intergenic |
| GAAACCGGCGAAATTCTCTA+CGG | 0.639770 | 4_2:-41969047 | Msa0600490:CDS |
| GAATCATAACTAGCTCTAGA+GGG | 0.642526 | 4_2:+41966668 | None:intergenic |
| CAAGCCGTAGAGAATTTCGC+CGG | 0.643000 | 4_2:+41969043 | None:intergenic |
| GATCATGTATTGGATCCAGA+AGG | 0.647337 | 4_2:-41967016 | Msa0600490:CDS |
| TGAGTCTCTAGTAACACCAA+TGG | 0.648452 | 4_2:+41968972 | None:intergenic |
| TGGGTGATGCCATCATACTT+GGG | 0.669553 | 4_2:+41968618 | None:intergenic |
| AATACCAGAGAAAACAGGAA+AGG | 0.671132 | 4_2:-41967050 | Msa0600490:CDS |
| ACACACTAACAAGTCAACAG+TGG | 0.683258 | 4_2:+41966589 | None:intergenic |
| GGTGCCGTTGAAACAACATG+AGG | 0.720627 | 4_2:+41968639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATTATATATATA+TGG | - | chr4_2:41967013-41967032 | Msa0600490:CDS | 0.0% |
| !! | TATATATATTATATATATAT+GGG | - | chr4_2:41967014-41967033 | Msa0600490:CDS | 0.0% |
| !!! | AATATATAATTTTAAAATAT+TGG | + | chr4_2:41968866-41968885 | None:intergenic | 0.0% |
| !!! | TTCCTTTTTTTTTTTTTTTT+TGG | + | chr4_2:41966838-41966857 | None:intergenic | 10.0% |
| !!! | TACTATATTGATTAATTTAT+TGG | - | chr4_2:41966889-41966908 | Msa0600490:CDS | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | - | chr4_2:41968346-41968365 | Msa0600490:intron | 10.0% |
| !!! | CAATTTCTTTTTTTTTTTTT+AGG | + | chr4_2:41968924-41968943 | None:intergenic | 10.0% |
| !! | AAGTAATGTATAAATTTAAT+TGG | + | chr4_2:41969017-41969036 | None:intergenic | 10.0% |
| !!! | GTTAATTCTATTTTATTATA+GGG | + | chr4_2:41971048-41971067 | None:intergenic | 10.0% |
| !!! | TGTTAATTCTATTTTATTAT+AGG | + | chr4_2:41971049-41971068 | None:intergenic | 10.0% |
| !! | AATAAAATAGAATTAACAAT+CGG | - | chr4_2:41971051-41971070 | Msa0600490:intron | 10.0% |
| !! | AATTAGGATTGTTAATTATT+TGG | + | chr4_2:41966658-41966677 | None:intergenic | 15.0% |
| !!! | ATAATTAACAATCCTAATTT+TGG | - | chr4_2:41966659-41966678 | Msa0600490:three_prime_UTR | 15.0% |
| !! | CACCAAAAAAAAAAAAAAAA+AGG | - | chr4_2:41966833-41966852 | Msa0600490:exon | 15.0% |
| !! | GAATTAAACATGAATTAAAT+TGG | + | chr4_2:41968132-41968151 | None:intergenic | 15.0% |
| !! | AACAAAACATGAATTAAATA+CGG | + | chr4_2:41968329-41968348 | None:intergenic | 15.0% |
| !!! | ACATGATTTGTTTTAAAAAT+AGG | - | chr4_2:41968431-41968450 | Msa0600490:intron | 15.0% |
| !!! | CATGATTTGTTTTAAAAATA+GGG | - | chr4_2:41968432-41968451 | Msa0600490:intron | 15.0% |
| !!! | AATGAAATTCACTAATTTTT+GGG | + | chr4_2:41968564-41968583 | None:intergenic | 15.0% |
| !!! | TAATGAAATTCACTAATTTT+TGG | + | chr4_2:41968565-41968584 | None:intergenic | 15.0% |
| !! | TGTTTGAAAAAAAATATTAG+AGG | - | chr4_2:41968803-41968822 | Msa0600490:CDS | 15.0% |
| !! | TATAAACTGTGATTAATAAT+GGG | + | chr4_2:41969056-41969075 | None:intergenic | 15.0% |
| !! | TTATAAACTGTGATTAATAA+TGG | + | chr4_2:41969057-41969076 | None:intergenic | 15.0% |
| !! | TACTAAATATACGTTATAAA+TGG | - | chr4_2:41970025-41970044 | Msa0600490:intron | 15.0% |
| !!! | AAATACGTCTTTTAAATTTT+AGG | - | chr4_2:41970228-41970247 | Msa0600490:intron | 15.0% |
| !!! | GAACTCATAATAATTTTATT+GGG | + | chr4_2:41970378-41970397 | None:intergenic | 15.0% |
| !!! | TGAACTCATAATAATTTTAT+TGG | + | chr4_2:41970379-41970398 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr4_2:41970682-41970701 | None:intergenic | 15.0% |
| !! | AAATTATCCATATTAACTAT+TGG | + | chr4_2:41970706-41970725 | None:intergenic | 15.0% |
| !! | AATAGTTAATATGGATAATT+TGG | - | chr4_2:41970705-41970724 | Msa0600490:intron | 15.0% |
| !!! | TGTTTTTTTAACTAGTATTT+TGG | - | chr4_2:41970925-41970944 | Msa0600490:intron | 15.0% |
| !!! | GTTTTTTTAACTAGTATTTT+GGG | - | chr4_2:41970926-41970945 | Msa0600490:intron | 15.0% |
| !!! | AAGCCTTTATTTTATTTTTT+CGG | + | chr4_2:41971009-41971028 | None:intergenic | 15.0% |
| !! | TAGAATTAGTTGAATATTAA+CGG | - | chr4_2:41971171-41971190 | Msa0600490:intron | 15.0% |
| !! | GTCTAACTATAAATATAAAA+TGG | - | chr4_2:41971193-41971212 | Msa0600490:intron | 15.0% |
| !! | ATTAGTTAAGTGAAATAAAA+AGG | + | chr4_2:41971862-41971881 | None:intergenic | 15.0% |
| !!! | AATTTTGTTTGTTTTGTCAT+GGG | + | chr4_2:41966760-41966779 | None:intergenic | 20.0% |
| !!! | TAATTTTGTTTGTTTTGTCA+TGG | + | chr4_2:41966761-41966780 | None:intergenic | 20.0% |
| !! | AAGTTAATAAATACACCTTA+AGG | - | chr4_2:41967147-41967166 | Msa0600490:intron | 20.0% |
| !! | TTCTAACAATAAATCTTGAT+TGG | - | chr4_2:41967286-41967305 | Msa0600490:intron | 20.0% |
| !! | ATTATCACTTATGTATCATT+GGG | - | chr4_2:41967411-41967430 | Msa0600490:intron | 20.0% |
| !! | ATATATGCATATGAAGAAAA+AGG | - | chr4_2:41967506-41967525 | Msa0600490:intron | 20.0% |
| !!! | ACAAAACATAAAGTATTCTA+AGG | - | chr4_2:41968225-41968244 | Msa0600490:intron | 20.0% |
| !!! | TGGTGATTGTAAATTTTATA+GGG | - | chr4_2:41968463-41968482 | Msa0600490:intron | 20.0% |
| !! | TTAGTGAATTTCATTAAGAT+AGG | - | chr4_2:41968569-41968588 | Msa0600490:CDS | 20.0% |
| !! | ACAAAAGATGATACATTTAT+AGG | + | chr4_2:41968699-41968718 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCATTGATAA+AGG | + | chr4_2:41968755-41968774 | None:intergenic | 20.0% |
| !! | TTTCACTCATAAAGTTAAAA+GGG | + | chr4_2:41969459-41969478 | None:intergenic | 20.0% |
| !! | ATTTCACTCATAAAGTTAAA+AGG | + | chr4_2:41969460-41969479 | None:intergenic | 20.0% |
| !!! | TAAACAACTCATTGAATTTT+GGG | + | chr4_2:41969561-41969580 | None:intergenic | 20.0% |
| !!! | TTAAACAACTCATTGAATTT+TGG | + | chr4_2:41969562-41969581 | None:intergenic | 20.0% |
| !! | ATTTAACCAAATTCAAACAT+TGG | - | chr4_2:41969645-41969664 | Msa0600490:intron | 20.0% |
| !! | AAAAAATATCCAAAAGTTTG+TGG | + | chr4_2:41970317-41970336 | None:intergenic | 20.0% |
| !!! | ATAATAATTTTATTGGGTGA+TGG | + | chr4_2:41970372-41970391 | None:intergenic | 20.0% |
| !! | AAAGAGAAAAATGTAGTATT+AGG | + | chr4_2:41970494-41970513 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+TGG | - | chr4_2:41970696-41970715 | Msa0600490:intron | 20.0% |
| !!! | AATATATAAGTTTTGCATTG+AGG | + | chr4_2:41970897-41970916 | None:intergenic | 20.0% |
| !! | TCTTGAGAATAAAAAAGAAT+TGG | + | chr4_2:41970969-41970988 | None:intergenic | 20.0% |
| !! | TACCCGAAAAAATAAAATAA+AGG | - | chr4_2:41971003-41971022 | Msa0600490:intron | 20.0% |
| !!! | AGCCTTTATTTTATTTTTTC+GGG | + | chr4_2:41971008-41971027 | None:intergenic | 20.0% |
| !!! | AATGAATATTTTTGTGTGAA+TGG | - | chr4_2:41971251-41971270 | Msa0600490:intron | 20.0% |
| !!! | ATGAATATTTTTGTGTGAAT+GGG | - | chr4_2:41971252-41971271 | Msa0600490:intron | 20.0% |
| !!! | TATGATTTTCGAATTTAGAT+TGG | + | chr4_2:41971572-41971591 | None:intergenic | 20.0% |
| !! | TTATTGAGATTATGATACAA+TGG | + | chr4_2:41971690-41971709 | None:intergenic | 20.0% |
| !!! | CACACACTAAACATATTTTT+TGG | - | chr4_2:41966602-41966621 | Msa0600490:three_prime_UTR | 25.0% |
| ! | CATTGCATTATTCCTTAATT+AGG | + | chr4_2:41966809-41966828 | None:intergenic | 25.0% |
| ! | GAATAATGCAATGTACAATT+TGG | - | chr4_2:41966855-41966874 | Msa0600490:CDS | 25.0% |
| ! | GATTATCACTTATGTATCAT+TGG | - | chr4_2:41967410-41967429 | Msa0600490:intron | 25.0% |
| ! | CTATTGAGATACTAATACAA+TGG | + | chr4_2:41967540-41967559 | None:intergenic | 25.0% |
| ! | CTGACAATATGTTTATAAGT+GGG | - | chr4_2:41968003-41968022 | Msa0600490:intron | 25.0% |
| ! | TGACAATATGTTTATAAGTG+GGG | - | chr4_2:41968004-41968023 | Msa0600490:intron | 25.0% |
| !!! | CTCTGATTTGTTGAAAATTA+GGG | + | chr4_2:41968073-41968092 | None:intergenic | 25.0% |
| ! | ATGTTTAATTCCGTATTCTA+AGG | - | chr4_2:41968141-41968160 | Msa0600490:intron | 25.0% |
| ! | ATGTTTAATTCCGTATTCTA+AGG | - | chr4_2:41968141-41968160 | Msa0600490:intron | 25.0% |
| ! | TTAAAAATAGGGATCAAAAG+TGG | - | chr4_2:41968443-41968462 | Msa0600490:intron | 25.0% |
| !! | GTGGTGATTGTAAATTTTAT+AGG | - | chr4_2:41968462-41968481 | Msa0600490:intron | 25.0% |
| !! | ACTAAGTCGAATGAAAATTT+TGG | - | chr4_2:41968486-41968505 | Msa0600490:intron | 25.0% |
| ! | AGGATTATAAACTACTTTCA+TGG | + | chr4_2:41968679-41968698 | None:intergenic | 25.0% |
| !! | TTTTTAATCCCTCTATACAA+TGG | - | chr4_2:41968718-41968737 | Msa0600490:CDS | 25.0% |
| ! | AAAAAAACGAACGTAAAAAG+TGG | - | chr4_2:41968826-41968845 | Msa0600490:CDS | 25.0% |
| !!! | TTTGTATTCCTTTAAAGTAG+AGG | - | chr4_2:41968951-41968970 | Msa0600490:CDS | 25.0% |
| !!! | TTGTATTCCTTTAAAGTAGA+GGG | - | chr4_2:41968952-41968971 | Msa0600490:CDS | 25.0% |
| !! | TTTTTACCATTTTGTGGATT+TGG | + | chr4_2:41968979-41968998 | None:intergenic | 25.0% |
| ! | ATCACAGTTTATAAATGACT+AGG | - | chr4_2:41969063-41969082 | Msa0600490:CDS | 25.0% |
| ! | TCACAGTTTATAAATGACTA+GGG | - | chr4_2:41969064-41969083 | Msa0600490:CDS | 25.0% |
| ! | TTTAAGAGTAATGAGAGTAA+TGG | - | chr4_2:41969288-41969307 | Msa0600490:CDS | 25.0% |
| ! | ATGAGTGAAATTGTAAAAGA+AGG | - | chr4_2:41969469-41969488 | Msa0600490:intron | 25.0% |
| ! | TTCAATGAGTTGTTTAACAA+AGG | - | chr4_2:41969565-41969584 | Msa0600490:intron | 25.0% |
| ! | GCAAATCAAAATTAATACCT+TGG | + | chr4_2:41969732-41969751 | None:intergenic | 25.0% |
| !! | TCGATGAATTTTGTCTATTT+TGG | - | chr4_2:41970101-41970120 | Msa0600490:intron | 25.0% |
| !! | CGATGAATTTTGTCTATTTT+GGG | - | chr4_2:41970102-41970121 | Msa0600490:intron | 25.0% |
| !!! | CTGAATTTTAGGATTTAAGT+CGG | - | chr4_2:41970173-41970192 | Msa0600490:intron | 25.0% |
| !!! | TGAATTTTAGGATTTAAGTC+GGG | - | chr4_2:41970174-41970193 | Msa0600490:intron | 25.0% |
| ! | AATGAGTAAAAGAAAGAGAA+TGG | + | chr4_2:41970739-41970758 | None:intergenic | 25.0% |
| ! | AATGAGAGTCAAATACATAT+AGG | + | chr4_2:41970845-41970864 | None:intergenic | 25.0% |
| !! | TTTTTATTCTCAAGATGTGA+AGG | - | chr4_2:41970974-41970993 | Msa0600490:intron | 25.0% |
| ! | TCTTCAATATCTTTATGCAA+TGG | + | chr4_2:41971307-41971326 | None:intergenic | 25.0% |
| ! | TAAAGATATTGAAGAACTGT+AGG | - | chr4_2:41971312-41971331 | Msa0600490:intron | 25.0% |
| ! | GATAATATTGGATCATGTAT+TGG | - | chr4_2:41971364-41971383 | Msa0600490:intron | 25.0% |
| ! | GAAAATCATAATGAGTTTGT+TGG | - | chr4_2:41971582-41971601 | Msa0600490:intron | 25.0% |
| ACAATACTAAGGCCAAAATT+AGG | + | chr4_2:41966674-41966693 | None:intergenic | 30.0% | |
| GCATTCTTTGAACCTAATTA+AGG | - | chr4_2:41966794-41966813 | Msa0600490:three_prime_UTR | 30.0% | |
| AGTTTGTATCATGTTCAGTT+TGG | - | chr4_2:41966936-41966955 | Msa0600490:CDS | 30.0% | |
| TTATAGCAACATACACCTTA+AGG | + | chr4_2:41967165-41967184 | None:intergenic | 30.0% | |
| ACCTTCTAACAAAAACAAGT+GGG | - | chr4_2:41967188-41967207 | Msa0600490:intron | 30.0% | |
| ! | AAGAACTTTTGCAGTTAATG+TGG | + | chr4_2:41967247-41967266 | None:intergenic | 30.0% |
| TAACTGCAAAAGTTCTTCTA+TGG | - | chr4_2:41967250-41967269 | Msa0600490:intron | 30.0% | |
| TTAATGCATCACATTCACAA+AGG | - | chr4_2:41967388-41967407 | Msa0600490:intron | 30.0% | |
| AAGTGATATCCCATCATAAA+TGG | - | chr4_2:41967565-41967584 | Msa0600490:intron | 30.0% | |
| CTTGATGAGAGTTTATAAAG+AGG | - | chr4_2:41967647-41967666 | Msa0600490:intron | 30.0% | |
| CCACTTATAAACATATTGTC+AGG | + | chr4_2:41968005-41968024 | None:intergenic | 30.0% | |
| CCTGACAATATGTTTATAAG+TGG | - | chr4_2:41968002-41968021 | Msa0600490:intron | 30.0% | |
| GACAATATGTTTATAAGTGG+GGG | - | chr4_2:41968005-41968024 | Msa0600490:intron | 30.0% | |
| CTAACTCTTCCTTACAAAAT+CGG | + | chr4_2:41968049-41968068 | None:intergenic | 30.0% | |
| !! | GCTCTGATTTGTTGAAAATT+AGG | + | chr4_2:41968074-41968093 | None:intergenic | 30.0% |
| AATTAAATTGGTGCGTGAAT+AGG | + | chr4_2:41968120-41968139 | None:intergenic | 30.0% | |
| !! | TTTAGCTCTTCCTTAGAATA+CGG | + | chr4_2:41968185-41968204 | None:intergenic | 30.0% |
| ! | AAGTCGAATGAAAATTTTGG+AGG | - | chr4_2:41968489-41968508 | Msa0600490:intron | 30.0% |
| ! | AGTCGAATGAAAATTTTGGA+GGG | - | chr4_2:41968490-41968509 | Msa0600490:intron | 30.0% |
| ATCCACAAAATGGTAAAAAC+TGG | - | chr4_2:41968980-41968999 | Msa0600490:CDS | 30.0% | |
| TCCACAAAATGGTAAAAACT+GGG | - | chr4_2:41968981-41969000 | Msa0600490:CDS | 30.0% | |
| ! | AACTGTGATTAATAATGGGA+TGG | + | chr4_2:41969052-41969071 | None:intergenic | 30.0% |
| TGCTTGGACAAATTGAAATA+TGG | - | chr4_2:41969113-41969132 | Msa0600490:CDS | 30.0% | |
| ! | ACAATTTGAGTTAAGGATAG+CGG | + | chr4_2:41969226-41969245 | None:intergenic | 30.0% |
| ! | ATTCTGCACAATTTGAGTTA+AGG | + | chr4_2:41969233-41969252 | None:intergenic | 30.0% |
| CATTACTCTTAAAAGTAGAG+TGG | + | chr4_2:41969281-41969300 | None:intergenic | 30.0% | |
| TAAAAGGGTTCATATGAGTT+GGG | + | chr4_2:41969444-41969463 | None:intergenic | 30.0% | |
| TTAAAAGGGTTCATATGAGT+TGG | + | chr4_2:41969445-41969464 | None:intergenic | 30.0% | |
| ! | GTAAAAGAAGGCACAAAAAA+TGG | - | chr4_2:41969481-41969500 | Msa0600490:intron | 30.0% |
| TGGTTATGACCAATTTGAAA+TGG | - | chr4_2:41969525-41969544 | Msa0600490:intron | 30.0% | |
| CATCAACCAATGTTTGAATT+TGG | + | chr4_2:41969654-41969673 | None:intergenic | 30.0% | |
| ! | ATTCAAACATTGGTTGATGT+TGG | - | chr4_2:41969655-41969674 | Msa0600490:intron | 30.0% |
| AATTAATACCTTGGATGTGA+GGG | + | chr4_2:41969723-41969742 | None:intergenic | 30.0% | |
| AAATTAATACCTTGGATGTG+AGG | + | chr4_2:41969724-41969743 | None:intergenic | 30.0% | |
| ATGATCGTATATACTAACCA+AGG | - | chr4_2:41969875-41969894 | Msa0600490:intron | 30.0% | |
| TAACCAAGGTTATCAAAATC+AGG | - | chr4_2:41969889-41969908 | Msa0600490:intron | 30.0% | |
| AAAATCGCATTCAAAATCGA+AGG | - | chr4_2:41969918-41969937 | Msa0600490:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | - | chr4_2:41969931-41969950 | Msa0600490:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | - | chr4_2:41969983-41970002 | Msa0600490:intron | 30.0% | |
| !!! | TCTATTTTGGGATTCTACTA+TGG | - | chr4_2:41970114-41970133 | Msa0600490:intron | 30.0% |
| CGACTTAAATCCTAAAATTC+AGG | + | chr4_2:41970175-41970194 | None:intergenic | 30.0% | |
| ! | TGTTATAGATAGTTTGAGAC+AGG | - | chr4_2:41970254-41970273 | Msa0600490:intron | 30.0% |
| ! | GTTATAGATAGTTTGAGACA+GGG | - | chr4_2:41970255-41970274 | Msa0600490:intron | 30.0% |
| ! | TTATAGATAGTTTGAGACAG+GGG | - | chr4_2:41970256-41970275 | Msa0600490:intron | 30.0% |
| AAATATCCAAAAGTTTGTGG+AGG | + | chr4_2:41970314-41970333 | None:intergenic | 30.0% | |
| !! | AAGTGACACTCATTTTGAAA+CGG | + | chr4_2:41970562-41970581 | None:intergenic | 30.0% |
| !!! | AGTGACATTCATTTTGAAAC+TGG | + | chr4_2:41970588-41970607 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+TGG | + | chr4_2:41970653-41970672 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | + | chr4_2:41970657-41970676 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr4_2:41970785-41970804 | None:intergenic | 30.0% |
| AACAGGAAAGGTGATAATAT+TGG | - | chr4_2:41971352-41971371 | Msa0600490:intron | 30.0% | |
| AGATACTTATTCAAAGAGAC+AGG | - | chr4_2:41971488-41971507 | Msa0600490:intron | 30.0% | |
| !!! | TTTTGATGATGTTGTAACGA+GGG | + | chr4_2:41971517-41971536 | None:intergenic | 30.0% |
| !!! | ATTTTGATGATGTTGTAACG+AGG | + | chr4_2:41971518-41971537 | None:intergenic | 30.0% |
| !!! | GACTTTTGTTTTGTTAGCTA+AGG | - | chr4_2:41971656-41971675 | Msa0600490:intron | 30.0% |
| CGCAATTTAGCACAATACTA+AGG | + | chr4_2:41966685-41966704 | None:intergenic | 35.0% | |
| TATGAGAAAAGACAGAGGTA+AGG | - | chr4_2:41966707-41966726 | Msa0600490:three_prime_UTR | 35.0% | |
| GTTTACCAGTTCACAGAATA+TGG | - | chr4_2:41966729-41966748 | Msa0600490:three_prime_UTR | 35.0% | |
| CAAATCCATATTCTGTGAAC+TGG | + | chr4_2:41966737-41966756 | None:intergenic | 35.0% | |
| ATGATACAAACTGAGAAGGA+GGG | + | chr4_2:41966928-41966947 | None:intergenic | 35.0% | |
| GAACATGATACAAACTGAGA+AGG | + | chr4_2:41966932-41966951 | None:intergenic | 35.0% | |
| GTATCATGTTCAGTTTGGAT+TGG | - | chr4_2:41966941-41966960 | Msa0600490:CDS | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr4_2:41967099-41967118 | Msa0600490:CDS | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | chr4_2:41967105-41967124 | None:intergenic | 35.0% | |
| CACCTTCTAACAAAAACAAG+TGG | - | chr4_2:41967187-41967206 | Msa0600490:intron | 35.0% | |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | + | chr4_2:41967192-41967211 | None:intergenic | 35.0% |
| TGCAAAAGTTCTTCTATGGA+AGG | - | chr4_2:41967254-41967273 | Msa0600490:intron | 35.0% | |
| GCAAAAGTTCTTCTATGGAA+GGG | - | chr4_2:41967255-41967274 | Msa0600490:intron | 35.0% | |
| TCTTCCTTAGATTGATTACG+TGG | + | chr4_2:41967474-41967493 | None:intergenic | 35.0% | |
| TAAGTGGAGCCATTTATGAT+GGG | + | chr4_2:41967577-41967596 | None:intergenic | 35.0% | |
| ATAAGTGGAGCCATTTATGA+TGG | + | chr4_2:41967578-41967597 | None:intergenic | 35.0% | |
| ! | TCCACTTATGTGGTTTGTAT+TGG | - | chr4_2:41967589-41967608 | Msa0600490:intron | 35.0% |
| ! | CCACTTATGTGGTTTGTATT+GGG | - | chr4_2:41967590-41967609 | Msa0600490:intron | 35.0% |
| GATGAGAGTTTATAAAGAGG+AGG | - | chr4_2:41967650-41967669 | Msa0600490:intron | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr4_2:41967723-41967742 | None:intergenic | 35.0% | |
| ! | CGATTTTGTAAGGAAGAGTT+AGG | - | chr4_2:41968047-41968066 | Msa0600490:intron | 35.0% |
| ATGAGCTCTTCCTTAGAATA+CGG | + | chr4_2:41968154-41968173 | None:intergenic | 35.0% | |
| GTATACTCCACAACATTATG+AGG | - | chr4_2:41968591-41968610 | Msa0600490:CDS | 35.0% | |
| AGTTGTTCCTCATAATGTTG+TGG | + | chr4_2:41968601-41968620 | None:intergenic | 35.0% | |
| ATTTGGTCCCTCTACTTTAA+AGG | + | chr4_2:41968962-41968981 | None:intergenic | 35.0% | |
| ! | TCCCAGTTTTTACCATTTTG+TGG | + | chr4_2:41968985-41969004 | None:intergenic | 35.0% |
| !!! | TTTTGCTCTAAAAGCAGTTG+TGG | - | chr4_2:41969162-41969181 | Msa0600490:CDS | 35.0% |
| CTTAAAAGTAGAGTGGAATC+AGG | + | chr4_2:41969274-41969293 | None:intergenic | 35.0% | |
| AGTGCAGAAAAATCAGAAAC+CGG | - | chr4_2:41969328-41969347 | Msa0600490:intron | 35.0% | |
| ACAAGACACAAAAGTGACAT+TGG | - | chr4_2:41969393-41969412 | Msa0600490:intron | 35.0% | |
| AAAATGGCACTGCTTTCTTT+AGG | - | chr4_2:41969497-41969516 | Msa0600490:intron | 35.0% | |
| CAACACTAGCCATTTCAAAT+TGG | + | chr4_2:41969537-41969556 | None:intergenic | 35.0% | |
| GTTATTGCTGGATACAAAGA+TGG | - | chr4_2:41969622-41969641 | Msa0600490:intron | 35.0% | |
| !! | TTTGCCTCATGTTGTTTCAA+CGG | - | chr4_2:41969747-41969766 | Msa0600490:intron | 35.0% |
| ATGTAAATAGCATCAGCACT+AGG | + | chr4_2:41969826-41969845 | None:intergenic | 35.0% | |
| ! | TGCTGATGCTATTTACATCA+AGG | - | chr4_2:41969828-41969847 | Msa0600490:intron | 35.0% |
| !! | AGTCCTGATTTTGATAACCT+TGG | + | chr4_2:41969895-41969914 | None:intergenic | 35.0% |
| CTATGGATTTAAGTCGTTGA+TGG | - | chr4_2:41970131-41970150 | Msa0600490:intron | 35.0% | |
| ! | GTCGCAAAATCCTGAATTTT+AGG | - | chr4_2:41970162-41970181 | Msa0600490:intron | 35.0% |
| TGTTTACTCATATAGGAGCT+TGG | + | chr4_2:41970816-41970835 | None:intergenic | 35.0% | |
| GAGCTTGTGTTTACTCATAT+AGG | + | chr4_2:41970823-41970842 | None:intergenic | 35.0% | |
| !! | AGCCAGAAATTTTGAGAAGT+GGG | + | chr4_2:41971129-41971148 | None:intergenic | 35.0% |
| !! | TAGCCAGAAATTTTGAGAAG+TGG | + | chr4_2:41971130-41971149 | None:intergenic | 35.0% |
| ! | ATTTTTGTGTGAATGGGTAG+TGG | - | chr4_2:41971258-41971277 | Msa0600490:intron | 35.0% |
| GATATTGAAGAACTGTAGGA+AGG | - | chr4_2:41971316-41971335 | Msa0600490:intron | 35.0% | |
| AATACCAGAGAAAACAGGAA+AGG | - | chr4_2:41971340-41971359 | Msa0600490:intron | 35.0% | |
| GATGAACCATTTACTGACAT+TGG | - | chr4_2:41971398-41971417 | Msa0600490:intron | 35.0% | |
| ATATTGTTTGCACACAACTC+TGG | - | chr4_2:41971437-41971456 | Msa0600490:intron | 35.0% | |
| GATTGGAAATGCTTCAATGA+TGG | + | chr4_2:41971555-41971574 | None:intergenic | 35.0% | |
| ATGTGTTGTGTGACTTTACT+TGG | - | chr4_2:41971634-41971653 | Msa0600490:intron | 35.0% | |
| !! | GAATCATAACTAGCTCTAGA+GGG | + | chr4_2:41971725-41971744 | None:intergenic | 35.0% |
| !! | TGAATCATAACTAGCTCTAG+AGG | + | chr4_2:41971726-41971745 | None:intergenic | 35.0% |
| AGCTAGTTATGATTCATGCA+TGG | - | chr4_2:41971730-41971749 | Msa0600490:intron | 35.0% | |
| GCTAGTTATGATTCATGCAT+GGG | - | chr4_2:41971731-41971750 | Msa0600490:intron | 35.0% | |
| CATGATACAAACTGAGAAGG+AGG | + | chr4_2:41966929-41966948 | None:intergenic | 40.0% | |
| ! | GTTCAGTTTGGATTGGACTA+AGG | - | chr4_2:41966948-41966967 | Msa0600490:CDS | 40.0% |
| ! | TTGGATTGGACTAAGGAGTT+TGG | - | chr4_2:41966955-41966974 | Msa0600490:CDS | 40.0% |
| ! | TGGATTGGACTAAGGAGTTT+GGG | - | chr4_2:41966956-41966975 | Msa0600490:CDS | 40.0% |
| AAGGAGTTTGGGAAACTCTT+CGG | - | chr4_2:41966967-41966986 | Msa0600490:CDS | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr4_2:41967098-41967117 | Msa0600490:CDS | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | + | chr4_2:41967106-41967125 | None:intergenic | 40.0% | |
| TGTGCCACGTAATCAATCTA+AGG | - | chr4_2:41967467-41967486 | Msa0600490:intron | 40.0% | |
| CATAAATGGCTCCACTTATG+TGG | - | chr4_2:41967579-41967598 | Msa0600490:intron | 40.0% | |
| CCCAATACAAACCACATAAG+TGG | + | chr4_2:41967593-41967612 | None:intergenic | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | + | chr4_2:41967718-41967737 | None:intergenic | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr4_2:41967719-41967738 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | - | chr4_2:41968086-41968105 | Msa0600490:intron | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+GGG | - | chr4_2:41968087-41968106 | Msa0600490:intron | 40.0% | |
| AAATTGGTGCGTGAATAGGT+AGG | + | chr4_2:41968116-41968135 | None:intergenic | 40.0% | |
| TGAGGAACAACTCACAACAA+TGG | - | chr4_2:41968609-41968628 | Msa0600490:CDS | 40.0% | |
| GAGGAACAACTCACAACAAT+GGG | - | chr4_2:41968610-41968629 | Msa0600490:CDS | 40.0% | |
| CACACATGCCATTGTATAGA+GGG | + | chr4_2:41968729-41968748 | None:intergenic | 40.0% | |
| AAAAGTGACATTGGCACCAT+TGG | - | chr4_2:41969402-41969421 | Msa0600490:intron | 40.0% | |
| TGAGTCTCTAGTAACACCAA+TGG | + | chr4_2:41969421-41969440 | None:intergenic | 40.0% | |
| ACTGCTTTCTTTAGGTGTCA+TGG | - | chr4_2:41969505-41969524 | Msa0600490:intron | 40.0% | |
| ! | GTGTTTAGAGCTGTTATTGC+TGG | - | chr4_2:41969610-41969629 | Msa0600490:intron | 40.0% |
| ! | CAAACATTGGTTGATGTTGG+TGG | - | chr4_2:41969658-41969677 | Msa0600490:intron | 40.0% |
| TGTTAGTGTGTAACGTGTGT+GGG | + | chr4_2:41970412-41970431 | None:intergenic | 40.0% | |
| ATGTTAGTGTGTAACGTGTG+TGG | + | chr4_2:41970413-41970432 | None:intergenic | 40.0% | |
| !! | TTTGAAACGGAGGGAGTATT+AGG | + | chr4_2:41970549-41970568 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_2:41970558-41970577 | None:intergenic | 40.0% |
| !!! | TGACACTCATTTTGAAACGG+AGG | + | chr4_2:41970559-41970578 | None:intergenic | 40.0% |
| TTGAGGAACACTGCTCATAT+GGG | + | chr4_2:41970880-41970899 | None:intergenic | 40.0% | |
| ATTGAGGAACACTGCTCATA+TGG | + | chr4_2:41970881-41970900 | None:intergenic | 40.0% | |
| !! | CCAGAAATTTTGAGAAGTGG+GGG | + | chr4_2:41971127-41971146 | None:intergenic | 40.0% |
| !! | GCCAGAAATTTTGAGAAGTG+GGG | + | chr4_2:41971128-41971147 | None:intergenic | 40.0% |
| TCTAACACATCTCAAACCAG+TGG | + | chr4_2:41971155-41971174 | None:intergenic | 40.0% | |
| AAGGCAATACCAGAGAAAAC+AGG | - | chr4_2:41971335-41971354 | Msa0600490:intron | 40.0% | |
| ! | ATCACCTTTCCTGTTTTCTC+TGG | + | chr4_2:41971347-41971366 | None:intergenic | 40.0% |
| GATCATGTATTGGATCCAGA+AGG | - | chr4_2:41971374-41971393 | Msa0600490:intron | 40.0% | |
| GTAAATGGTTCATCTCCTTC+TGG | + | chr4_2:41971392-41971411 | None:intergenic | 40.0% | |
| GCTATGCCAATGTCAGTAAA+TGG | + | chr4_2:41971407-41971426 | None:intergenic | 40.0% | |
| CTCACACAACAATCTGCATA+TGG | + | chr4_2:41971771-41971790 | None:intergenic | 40.0% | |
| ACACACTAACAAGTCAACAG+TGG | + | chr4_2:41971804-41971823 | None:intergenic | 40.0% | |
| TCAACATCCACGCACCTTAA+AGG | + | chr4_2:41966555-41966574 | None:intergenic | 45.0% | |
| GCGCTTATGAGAAAAGACAG+AGG | - | chr4_2:41966702-41966721 | Msa0600490:three_prime_UTR | 45.0% | |
| AGGAGTTTGGGAAACTCTTC+GGG | - | chr4_2:41966968-41966987 | Msa0600490:CDS | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | - | chr4_2:41967612-41967631 | Msa0600490:intron | 45.0% | |
| ! | CCCAACCACGATTTCTAAGA+TGG | - | chr4_2:41967715-41967734 | Msa0600490:intron | 45.0% |
| TGCTATCAGGTTTCCGCTAT+CGG | - | chr4_2:41967787-41967806 | Msa0600490:intron | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | + | chr4_2:41967817-41967836 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | + | chr4_2:41967818-41967837 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | + | chr4_2:41967821-41967840 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | - | chr4_2:41967864-41967883 | Msa0600490:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | - | chr4_2:41967869-41967888 | Msa0600490:intron | 45.0% | |
| GGGTGGCTAAACATATTGTC+AGG | + | chr4_2:41967901-41967920 | None:intergenic | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | + | chr4_2:41967817-41967836 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | + | chr4_2:41967818-41967837 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | + | chr4_2:41967821-41967840 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | - | chr4_2:41967864-41967883 | Msa0600490:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | - | chr4_2:41967869-41967888 | Msa0600490:intron | 45.0% | |
| !! | CCTTACAAAATCGGCTTGTG+AGG | + | chr4_2:41968040-41968059 | None:intergenic | 45.0% |
| !! | CCTCACAAGCCGATTTTGTA+AGG | - | chr4_2:41968037-41968056 | Msa0600490:intron | 45.0% |
| GCACACATGCCATTGTATAG+AGG | + | chr4_2:41968730-41968749 | None:intergenic | 45.0% | |
| GAGGGACCAAATCCACAAAA+TGG | - | chr4_2:41968970-41968989 | Msa0600490:CDS | 45.0% | |
| AAATGACTAGGGTGTGAGCA+AGG | - | chr4_2:41969075-41969094 | Msa0600490:CDS | 45.0% | |
| GAAGAGGAGGAATCATTGCT+TGG | - | chr4_2:41969097-41969116 | Msa0600490:CDS | 45.0% | |
| ! | AGGATAGCGGTTTACACTGA+CGG | + | chr4_2:41969213-41969232 | None:intergenic | 45.0% |
| AGTAGAGTGGAATCAGGAGA+GGG | + | chr4_2:41969268-41969287 | None:intergenic | 45.0% | |
| AAGTAGAGTGGAATCAGGAG+AGG | + | chr4_2:41969269-41969288 | None:intergenic | 45.0% | |
| GAAACCGGCGAAATTCTCTA+CGG | - | chr4_2:41969343-41969362 | Msa0600490:intron | 45.0% | |
| GCTTGACACGTGCATCAAAA+TGG | - | chr4_2:41969365-41969384 | Msa0600490:intron | 45.0% | |
| AAAGGACAAGCATGCACAAC+TGG | - | chr4_2:41969583-41969602 | Msa0600490:intron | 45.0% | |
| ! | ACATTGGTTGATGTTGGTGG+TGG | - | chr4_2:41969661-41969680 | Msa0600490:intron | 45.0% |
| !! | GTTGATGTTGGTGGTGGTAT+TGG | - | chr4_2:41969667-41969686 | Msa0600490:intron | 45.0% |
| AAAGCTTACCCTCACATCCA+AGG | - | chr4_2:41969712-41969731 | Msa0600490:intron | 45.0% | |
| TGGGTGATGCCATCATACTT+GGG | + | chr4_2:41969775-41969794 | None:intergenic | 45.0% | |
| ATGGGTGATGCCATCATACT+TGG | + | chr4_2:41969776-41969795 | None:intergenic | 45.0% | |
| TATGATGGCATCACCCATGT+TGG | - | chr4_2:41969778-41969797 | Msa0600490:intron | 45.0% | |
| GAACATGTCTCCTCCAACAT+GGG | + | chr4_2:41969794-41969813 | None:intergenic | 45.0% | |
| ! | TAGATAGTTTGAGACAGGGG+CGG | - | chr4_2:41970259-41970278 | Msa0600490:intron | 45.0% |
| AGCCATATAGGAGCTTGTGT+GGG | - | chr4_2:41970282-41970301 | Msa0600490:intron | 45.0% | |
| ATCCAAAAGTTTGTGGAGGC+AGG | + | chr4_2:41970310-41970329 | None:intergenic | 45.0% | |
| GTTAGTGTGTAACGTGTGTG+GGG | + | chr4_2:41970411-41970430 | None:intergenic | 45.0% | |
| ACACTGCTCATATGGGAGTT+AGG | + | chr4_2:41970873-41970892 | None:intergenic | 45.0% | |
| CCCCCACTTCTCAAAATTTC+TGG | - | chr4_2:41971124-41971143 | Msa0600490:intron | 45.0% | |
| !! | AAAATTTCTGGCTACGCCAC+TGG | - | chr4_2:41971136-41971155 | Msa0600490:intron | 45.0% |
| !! | GGTAGTGGATTCTTCATGAC+TGG | - | chr4_2:41971273-41971292 | Msa0600490:intron | 45.0% |
| TTGTTTGCACACAACTCTGG+TGG | - | chr4_2:41971440-41971459 | Msa0600490:intron | 45.0% | |
| ACAACTCTGGTGGTAAGGAA+AGG | - | chr4_2:41971450-41971469 | Msa0600490:intron | 45.0% | |
| AGGAAAGGACTGAAGAGAAC+TGG | - | chr4_2:41971465-41971484 | Msa0600490:intron | 45.0% | |
| !! | TCATGCATGGGAGCTGTTTT+TGG | - | chr4_2:41971743-41971762 | Msa0600490:intron | 45.0% |
| !! | ATATATATTATATATATATG+GGG | - | chr4_2:41967065-41967084 | Msa0600490:CDS | 5.0% |
| !! | TCAAAATTAAATAATAAAAA+AGG | - | chr4_2:41967354-41967373 | Msa0600490:intron | 5.0% |
| !!! | TATAAATTTTATATTTTTTG+CGG | - | chr4_2:41968295-41968314 | Msa0600490:intron | 5.0% |
| !!! | TTAAAAAATTCTAATTTTTT+GGG | - | chr4_2:41968347-41968366 | Msa0600490:intron | 5.0% |
| !!! | AATTTCTTTTTTTTTTTTTA+GGG | + | chr4_2:41968923-41968942 | None:intergenic | 5.0% |
| !!! | ATATTTAGTAATATTTTTTT+GGG | + | chr4_2:41970015-41970034 | None:intergenic | 5.0% |
| !!! | TATATTTAGTAATATTTTTT+TGG | + | chr4_2:41970016-41970035 | None:intergenic | 5.0% |
| CTCTCCACCTTCTGCCTTTA+AGG | - | chr4_2:41966538-41966557 | Msa0600490:three_prime_UTR | 50.0% | |
| GTCTATCCGATGTGGGACTT+GGG | + | chr4_2:41967621-41967640 | None:intergenic | 50.0% | |
| CAAGTCCCACATCGGATAGA+CGG | - | chr4_2:41967620-41967639 | Msa0600490:intron | 50.0% | |
| AAGTCCCACATCGGATAGAC+GGG | - | chr4_2:41967621-41967640 | Msa0600490:intron | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr4_2:41967681-41967700 | Msa0600490:intron | 50.0% |
| CTAACACAGCCCCACAAAAC+CGG | + | chr4_2:41967694-41967713 | None:intergenic | 50.0% | |
| ATCTTGGACCCAGTGGATCT+TGG | + | chr4_2:41967754-41967773 | None:intergenic | 50.0% | |
| !! | GATAGCGGAAACCTGATAGC+AGG | + | chr4_2:41967788-41967807 | None:intergenic | 50.0% |
| GCTATCAGGTTTCCGCTATC+GGG | - | chr4_2:41967788-41967807 | Msa0600490:intron | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | + | chr4_2:41967814-41967833 | None:intergenic | 50.0% |
| ! | TCGTGGACATAAATGGTGGG+TGG | + | chr4_2:41967814-41967833 | None:intergenic | 50.0% |
| !! | CAAAATCGGCTTGTGAGGTG+AGG | + | chr4_2:41968035-41968054 | None:intergenic | 50.0% |
| TTGGTGCGTGAATAGGTAGG+TGG | + | chr4_2:41968113-41968132 | None:intergenic | 50.0% | |
| CAAGCCGTAGAGAATTTCGC+CGG | + | chr4_2:41969350-41969369 | None:intergenic | 50.0% | |
| !! | GATGTTGGTGGTGGTATTGG+CGG | - | chr4_2:41969670-41969689 | Msa0600490:intron | 50.0% |
| !! | GGTGCCGTTGAAACAACATG+AGG | + | chr4_2:41969754-41969773 | None:intergenic | 50.0% |
| TCAACGGCACCCAAGTATGA+TGG | - | chr4_2:41969763-41969782 | Msa0600490:intron | 50.0% | |
| CGAACATGTCTCCTCCAACA+TGG | + | chr4_2:41969795-41969814 | None:intergenic | 50.0% | |
| GAGCCATATAGGAGCTTGTG+TGG | - | chr4_2:41970281-41970300 | Msa0600490:intron | 50.0% | |
| AGCCCACACAAGCTCCTATA+TGG | + | chr4_2:41970287-41970306 | None:intergenic | 50.0% | |
| ! | CTCCTGCCTCCACAAACTTT+TGG | - | chr4_2:41970305-41970324 | Msa0600490:intron | 50.0% |
| TGCACACAACTCTGGTGGTA+AGG | - | chr4_2:41971445-41971464 | Msa0600490:intron | 50.0% | |
| GGCAGAAGGTGGAGAGTGAT+TGG | + | chr4_2:41966534-41966553 | None:intergenic | 55.0% | |
| CGCACCTTAAAGGCAGAAGG+TGG | + | chr4_2:41966545-41966564 | None:intergenic | 55.0% | |
| CCACGCACCTTAAAGGCAGA+AGG | + | chr4_2:41966548-41966567 | None:intergenic | 55.0% | |
| !! | CCTTCTGCCTTTAAGGTGCG+TGG | - | chr4_2:41966545-41966564 | Msa0600490:three_prime_UTR | 55.0% |
| CGTCTATCCGATGTGGGACT+TGG | + | chr4_2:41967622-41967641 | None:intergenic | 55.0% | |
| GAGTCCCGTCTATCCGATGT+GGG | + | chr4_2:41967628-41967647 | None:intergenic | 55.0% | |
| AGAGTCCCGTCTATCCGATG+TGG | + | chr4_2:41967629-41967648 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_2:41967680-41967699 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr4_2:41967680-41967699 | Msa0600490:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr4_2:41967682-41967701 | Msa0600490:intron | 55.0% |
| AGAGCCTCTCCAAGATCCAC+TGG | - | chr4_2:41967742-41967761 | Msa0600490:intron | 55.0% | |
| GAGCCTCTCCAAGATCCACT+GGG | - | chr4_2:41967743-41967762 | Msa0600490:intron | 55.0% | |
| CACTGGGTCCAAGATCCACT+GGG | - | chr4_2:41967759-41967778 | Msa0600490:intron | 55.0% | |
| AGCGGAAACCTGATAGCAGG+TGG | + | chr4_2:41967785-41967804 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | + | chr4_2:41967831-41967850 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | - | chr4_2:41967831-41967850 | Msa0600490:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | + | chr4_2:41967838-41967857 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | + | chr4_2:41967843-41967862 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | - | chr4_2:41967840-41967859 | Msa0600490:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | - | chr4_2:41967841-41967860 | Msa0600490:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_2:41967842-41967861 | Msa0600490:intron | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | - | chr4_2:41967875-41967894 | Msa0600490:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | + | chr4_2:41967880-41967899 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | + | chr4_2:41967881-41967900 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | + | chr4_2:41967831-41967850 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | - | chr4_2:41967831-41967850 | Msa0600490:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | + | chr4_2:41967838-41967857 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | + | chr4_2:41967843-41967862 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | - | chr4_2:41967840-41967859 | Msa0600490:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | - | chr4_2:41967841-41967860 | Msa0600490:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_2:41967842-41967861 | Msa0600490:intron | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | - | chr4_2:41967875-41967894 | Msa0600490:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | + | chr4_2:41967880-41967899 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | + | chr4_2:41967881-41967900 | None:intergenic | 55.0% | |
| CTAGGGTGTGAGCAAGGAAG+AGG | - | chr4_2:41969081-41969100 | Msa0600490:CDS | 55.0% | |
| GATGGCATCACCCATGTTGG+AGG | - | chr4_2:41969781-41969800 | Msa0600490:intron | 55.0% | |
| GCACTCCTCACCTCACAAGC+CGG | - | chr4_2:41967672-41967691 | Msa0600490:intron | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr4_2:41967685-41967704 | None:intergenic | 60.0% |
| GGACCCAGTGGATCTTGGAG+AGG | + | chr4_2:41967749-41967768 | None:intergenic | 60.0% | |
| CCAGTGGATCTTGGACCCAG+TGG | + | chr4_2:41967761-41967780 | None:intergenic | 60.0% | |
| CCACTGGGTCCAAGATCCAC+TGG | - | chr4_2:41967758-41967777 | Msa0600490:intron | 60.0% | |
| !! | AATGGTGGGTGGCCCGATAG+CGG | + | chr4_2:41967803-41967822 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | - | chr4_2:41967839-41967858 | Msa0600490:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | + | chr4_2:41967844-41967863 | None:intergenic | 60.0% | |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | - | chr4_2:41967839-41967858 | Msa0600490:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | + | chr4_2:41967844-41967863 | None:intergenic | 60.0% | |
| GGGTGTGAGCAAGGAAGAGG+AGG | - | chr4_2:41969084-41969103 | Msa0600490:CDS | 60.0% | |
| AGACAGGGGCGGAGCCATAT+AGG | - | chr4_2:41970270-41970289 | Msa0600490:intron | 60.0% | |
| GCAGGTGGCCCAGTGGATCT+TGG | + | chr4_2:41967770-41967789 | None:intergenic | 65.0% | |
| CCTGATAGCAGGTGGCCCAG+TGG | + | chr4_2:41967777-41967796 | None:intergenic | 65.0% | |
| CCACTGGGCCACCTGCTATC+AGG | - | chr4_2:41967774-41967793 | Msa0600490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 41966515 | 41971897 | 41966515 | ID=Msa0600490;Name=Msa0600490 |
| chr4_2 | mRNA | 41966515 | 41971897 | 41966515 | ID=Msa0600490-mRNA-1;Parent=Msa0600490;Name=Msa0600490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|0.66|1|1|3|320|369 |
| chr4_2 | exon | 41966515 | 41967134 | 41966515 | ID=Msa0600490-mRNA-1:exon:9130;Parent=Msa0600490-mRNA-1 |
| chr4_2 | exon | 41968563 | 41969327 | 41968563 | ID=Msa0600490-mRNA-1:exon:9129;Parent=Msa0600490-mRNA-1 |
| chr4_2 | exon | 41971853 | 41971897 | 41971853 | ID=Msa0600490-mRNA-1:exon:9128;Parent=Msa0600490-mRNA-1 |
| chr4_2 | CDS | 41971853 | 41971897 | 41971853 | ID=Msa0600490-mRNA-1:cds;Parent=Msa0600490-mRNA-1 |
| chr4_2 | CDS | 41968563 | 41969327 | 41968563 | ID=Msa0600490-mRNA-1:cds;Parent=Msa0600490-mRNA-1 |
| chr4_2 | CDS | 41966835 | 41967134 | 41966835 | ID=Msa0600490-mRNA-1:cds;Parent=Msa0600490-mRNA-1 |
| chr4_2 | three_prime_UTR | 41966515 | 41966834 | 41966515 | ID=Msa0600490-mRNA-1:three_prime_utr;Parent=Msa0600490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
