Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677470 | XP_013443384.1 | 98.374 | 369 | 6 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677470 | sp|Q6WUC2|7OMT_PAPSO | 49.575 | 353 | 169 | 5 | 22 | 368 | 5 | 354 | 7.08e-124 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677470 | A0A072TIP9 | 98.374 | 369 | 6 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0639620 | Msa0677470 | 0.837418 | 5.258170e-57 | -8.615850e-47 |
| Msa0639640 | Msa0677470 | 0.800976 | 1.119407e-48 | -8.615850e-47 |
| Msa0677450 | Msa0677470 | 0.886890 | 2.305209e-72 | -8.615850e-47 |
| Msa0542320 | Msa0677470 | 0.817152 | 3.824512e-52 | -8.615850e-47 |
| Msa0600490 | Msa0677470 | 0.810911 | 9.108478e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677470 | MtrunA17_Chr4g0022021 | 98.374 | 369 | 6 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Msa0677470 | MtrunA17_Chr4g0021981 | 87.534 | 369 | 46 | 0 | 1 | 369 | 1 | 369 | 0.0 | 684 |
| Msa0677470 | MtrunA17_Chr3g0121301 | 41.056 | 341 | 188 | 6 | 31 | 366 | 27 | 359 | 1.04e-87 | 269 |
| Msa0677470 | MtrunA17_Chr5g0432251 | 41.595 | 351 | 193 | 8 | 25 | 368 | 14 | 359 | 4.14e-79 | 246 |
| Msa0677470 | MtrunA17_Chr5g0432301 | 38.968 | 349 | 203 | 7 | 25 | 367 | 15 | 359 | 1.15e-75 | 238 |
| Msa0677470 | MtrunA17_Chr7g0276401 | 39.178 | 365 | 202 | 10 | 15 | 367 | 18 | 374 | 6.13e-74 | 234 |
| Msa0677470 | MtrunA17_Chr5g0432241 | 37.569 | 362 | 211 | 7 | 18 | 368 | 3 | 360 | 1.14e-70 | 225 |
| Msa0677470 | MtrunA17_Chr7g0276411 | 36.628 | 344 | 195 | 12 | 22 | 349 | 7 | 343 | 4.57e-70 | 223 |
| Msa0677470 | MtrunA17_Chr3g0128011 | 37.798 | 336 | 187 | 11 | 44 | 367 | 90 | 415 | 4.90e-70 | 225 |
| Msa0677470 | MtrunA17_Chr8g0345851 | 45.935 | 246 | 124 | 6 | 107 | 349 | 32 | 271 | 1.55e-66 | 212 |
| Msa0677470 | MtrunA17_Chr5g0448091 | 36.875 | 320 | 188 | 8 | 44 | 354 | 35 | 349 | 1.37e-65 | 212 |
| Msa0677470 | MtrunA17_Chr1g0188391 | 36.490 | 359 | 212 | 9 | 20 | 368 | 9 | 361 | 3.57e-65 | 211 |
| Msa0677470 | MtrunA17_Chr7g0219141 | 34.483 | 377 | 218 | 9 | 1 | 368 | 1 | 357 | 2.82e-64 | 208 |
| Msa0677470 | MtrunA17_Chr8g0367491 | 35.380 | 342 | 198 | 11 | 34 | 358 | 33 | 368 | 6.68e-63 | 205 |
| Msa0677470 | MtrunA17_Chr5g0432211 | 36.158 | 354 | 194 | 7 | 25 | 368 | 14 | 345 | 1.67e-62 | 203 |
| Msa0677470 | MtrunA17_Chr5g0432261 | 36.390 | 349 | 186 | 8 | 25 | 368 | 10 | 327 | 5.72e-62 | 201 |
| Msa0677470 | MtrunA17_Chr4g0040621 | 34.746 | 354 | 210 | 7 | 25 | 368 | 27 | 369 | 1.41e-61 | 202 |
| Msa0677470 | MtrunA17_Chr7g0219161 | 36.023 | 347 | 202 | 9 | 18 | 354 | 7 | 343 | 7.11e-61 | 199 |
| Msa0677470 | MtrunA17_Chr8g0367441 | 34.247 | 365 | 213 | 13 | 5 | 349 | 1 | 358 | 2.45e-59 | 196 |
| Msa0677470 | MtrunA17_Chr7g0223231 | 34.104 | 346 | 216 | 7 | 23 | 365 | 11 | 347 | 4.57e-59 | 194 |
| Msa0677470 | MtrunA17_Chr7g0223241 | 35.191 | 341 | 209 | 7 | 28 | 365 | 16 | 347 | 8.31e-59 | 194 |
| Msa0677470 | MtrunA17_Chr4g0046361 | 32.692 | 364 | 233 | 8 | 13 | 368 | 2 | 361 | 2.08e-57 | 191 |
| Msa0677470 | MtrunA17_Chr8g0367451 | 33.913 | 345 | 208 | 10 | 20 | 353 | 26 | 361 | 2.32e-57 | 191 |
| Msa0677470 | MtrunA17_Chr8g0367501 | 34.311 | 341 | 204 | 11 | 20 | 349 | 13 | 344 | 7.70e-57 | 191 |
| Msa0677470 | MtrunA17_Chr4g0014641 | 33.973 | 365 | 227 | 8 | 14 | 368 | 3 | 363 | 7.10e-56 | 187 |
| Msa0677470 | MtrunA17_Chr1g0188371 | 35.015 | 337 | 206 | 9 | 20 | 348 | 9 | 340 | 1.02e-55 | 187 |
| Msa0677470 | MtrunA17_Chr3g0085211 | 35.625 | 320 | 192 | 10 | 44 | 355 | 43 | 356 | 2.67e-55 | 185 |
| Msa0677470 | MtrunA17_Chr4g0046531 | 33.618 | 351 | 222 | 7 | 23 | 368 | 374 | 718 | 2.47e-53 | 187 |
| Msa0677470 | MtrunA17_Chr4g0046531 | 32.578 | 353 | 225 | 7 | 23 | 369 | 12 | 357 | 2.77e-51 | 182 |
| Msa0677470 | MtrunA17_Chr4g0014561 | 33.983 | 359 | 223 | 8 | 20 | 368 | 9 | 363 | 3.54e-53 | 179 |
| Msa0677470 | MtrunA17_Chr4g0046341 | 34.332 | 367 | 226 | 8 | 13 | 368 | 2 | 364 | 1.28e-52 | 178 |
| Msa0677470 | MtrunA17_Chr4g0014681 | 33.705 | 359 | 224 | 8 | 20 | 368 | 9 | 363 | 1.73e-52 | 178 |
| Msa0677470 | MtrunA17_Chr7g0218261 | 33.731 | 335 | 204 | 12 | 44 | 367 | 40 | 367 | 9.59e-52 | 176 |
| Msa0677470 | MtrunA17_Chr1g0163621 | 33.746 | 323 | 196 | 10 | 44 | 354 | 52 | 368 | 1.13e-51 | 176 |
| Msa0677470 | MtrunA17_Chr3g0130011 | 32.865 | 356 | 226 | 9 | 16 | 365 | 7 | 355 | 1.89e-51 | 175 |
| Msa0677470 | MtrunA17_Chr8g0367381 | 33.033 | 333 | 185 | 9 | 19 | 337 | 19 | 327 | 2.33e-51 | 174 |
| Msa0677470 | MtrunA17_Chr2g0307521 | 35.119 | 336 | 198 | 13 | 44 | 367 | 35 | 362 | 2.75e-51 | 175 |
| Msa0677470 | MtrunA17_Chr7g0218211 | 33.432 | 338 | 204 | 12 | 43 | 367 | 39 | 368 | 5.06e-51 | 174 |
| Msa0677470 | MtrunA17_Chr3g0085201 | 33.125 | 320 | 200 | 9 | 44 | 355 | 30 | 343 | 2.01e-50 | 172 |
| Msa0677470 | MtrunA17_Chr1g0163601 | 34.056 | 323 | 195 | 10 | 44 | 354 | 38 | 354 | 2.48e-50 | 172 |
| Msa0677470 | MtrunA17_Chr1g0163611 | 32.840 | 338 | 207 | 11 | 44 | 367 | 38 | 369 | 3.86e-50 | 172 |
| Msa0677470 | MtrunA17_Chr7g0218181 | 33.851 | 322 | 194 | 11 | 44 | 355 | 41 | 353 | 9.19e-50 | 171 |
| Msa0677470 | MtrunA17_Chr7g0218301 | 32.353 | 340 | 208 | 10 | 44 | 367 | 41 | 374 | 1.23e-49 | 171 |
| Msa0677470 | MtrunA17_Chr2g0314271 | 33.623 | 345 | 218 | 9 | 27 | 365 | 12 | 351 | 1.25e-49 | 170 |
| Msa0677470 | MtrunA17_Chr7g0218271 | 32.941 | 340 | 206 | 10 | 44 | 367 | 41 | 374 | 2.18e-49 | 170 |
| Msa0677470 | MtrunA17_Chr1g0200491 | 34.862 | 327 | 187 | 12 | 44 | 354 | 41 | 357 | 3.27e-49 | 169 |
| Msa0677470 | MtrunA17_Chr7g0218131 | 33.230 | 322 | 197 | 10 | 44 | 354 | 41 | 355 | 9.86e-48 | 166 |
| Msa0677470 | MtrunA17_Chr4g0014661 | 32.231 | 363 | 230 | 8 | 14 | 368 | 3 | 357 | 2.34e-47 | 164 |
| Msa0677470 | MtrunA17_Chr3g0130061 | 30.899 | 356 | 233 | 9 | 16 | 365 | 7 | 355 | 1.99e-46 | 162 |
| Msa0677470 | MtrunA17_Chr4g0014591 | 31.667 | 360 | 236 | 7 | 14 | 368 | 3 | 357 | 4.86e-44 | 155 |
| Msa0677470 | MtrunA17_Chr6g0482291 | 42.073 | 164 | 82 | 5 | 188 | 349 | 5 | 157 | 2.71e-37 | 132 |
| Msa0677470 | MtrunA17_Chr7g0219171 | 45.522 | 134 | 68 | 3 | 238 | 368 | 117 | 248 | 3.38e-32 | 121 |
| Msa0677470 | MtrunA17_Chr4g0014601 | 30.268 | 261 | 178 | 4 | 14 | 273 | 3 | 260 | 6.78e-29 | 113 |
| Msa0677470 | MtrunA17_Chr8g0367401 | 47.273 | 110 | 57 | 1 | 161 | 270 | 2 | 110 | 2.04e-28 | 108 |
| Msa0677470 | MtrunA17_Chr4g0011691 | 44.792 | 96 | 53 | 0 | 272 | 367 | 140 | 235 | 3.09e-25 | 102 |
| Msa0677470 | MtrunA17_Chr1g0170941 | 52.632 | 76 | 35 | 1 | 192 | 267 | 1 | 75 | 2.12e-20 | 84.3 |
| Msa0677470 | MtrunA17_Chr8g0367461 | 44.681 | 94 | 50 | 2 | 257 | 349 | 1 | 93 | 1.99e-19 | 82.8 |
| Msa0677470 | MtrunA17_Chr8g0367391 | 45.349 | 86 | 43 | 4 | 266 | 349 | 32 | 115 | 1.61e-15 | 72.8 |
| Msa0677470 | MtrunA17_Chr8g0367421 | 37.273 | 110 | 51 | 2 | 161 | 270 | 2 | 93 | 2.01e-15 | 72.4 |
| Msa0677470 | MtrunA17_Chr8g0367471 | 44.444 | 72 | 39 | 1 | 188 | 259 | 5 | 75 | 1.38e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677470 | AT5G54160.1 | 37.500 | 320 | 189 | 6 | 42 | 355 | 34 | 348 | 5.10e-74 | 234 |
| Msa0677470 | AT4G35160.1 | 37.293 | 362 | 206 | 6 | 22 | 367 | 24 | 380 | 2.56e-72 | 230 |
| Msa0677470 | AT1G77520.1 | 35.967 | 367 | 212 | 10 | 17 | 365 | 17 | 378 | 5.06e-64 | 209 |
| Msa0677470 | AT4G35150.1 | 32.303 | 356 | 189 | 6 | 22 | 367 | 10 | 323 | 2.15e-59 | 195 |
| Msa0677470 | AT1G51990.1 | 32.970 | 367 | 220 | 12 | 16 | 368 | 8 | 362 | 4.90e-58 | 192 |
| Msa0677470 | AT1G51990.2 | 32.698 | 367 | 221 | 12 | 16 | 368 | 8 | 362 | 1.72e-55 | 186 |
| Msa0677470 | AT1G77530.1 | 34.465 | 383 | 224 | 13 | 5 | 365 | 1 | 378 | 4.95e-55 | 185 |
| Msa0677470 | AT1G63140.2 | 35.040 | 371 | 218 | 10 | 11 | 365 | 15 | 378 | 5.75e-55 | 185 |
| Msa0677470 | AT1G63140.4 | 35.040 | 371 | 218 | 10 | 11 | 365 | 35 | 398 | 9.24e-55 | 185 |
| Msa0677470 | AT1G33030.1 | 35.329 | 334 | 195 | 12 | 44 | 365 | 23 | 347 | 8.47e-53 | 179 |
| Msa0677470 | AT5G53810.1 | 34.018 | 341 | 203 | 9 | 44 | 367 | 42 | 377 | 2.68e-51 | 176 |
| Msa0677470 | AT3G53140.1 | 32.857 | 350 | 219 | 10 | 27 | 365 | 12 | 356 | 4.08e-48 | 167 |
| Msa0677470 | AT1G62900.1 | 44.776 | 201 | 107 | 3 | 167 | 365 | 4 | 202 | 4.25e-48 | 162 |
| Msa0677470 | AT5G37170.2 | 36.481 | 233 | 141 | 5 | 138 | 365 | 1 | 231 | 1.21e-47 | 162 |
| Msa0677470 | AT1G21130.1 | 36.646 | 322 | 179 | 12 | 44 | 349 | 42 | 354 | 1.64e-47 | 166 |
| Msa0677470 | AT1G21100.1 | 36.335 | 322 | 180 | 11 | 44 | 349 | 42 | 354 | 2.98e-47 | 165 |
| Msa0677470 | AT5G37170.1 | 32.468 | 308 | 177 | 9 | 63 | 365 | 50 | 331 | 2.13e-46 | 161 |
| Msa0677470 | AT1G21120.1 | 35.714 | 322 | 182 | 11 | 44 | 349 | 42 | 354 | 1.28e-45 | 160 |
| Msa0677470 | AT1G21110.1 | 34.451 | 328 | 190 | 11 | 44 | 355 | 42 | 360 | 3.65e-45 | 159 |
| Msa0677470 | AT1G21120.2 | 35.714 | 322 | 182 | 11 | 44 | 349 | 90 | 402 | 4.74e-45 | 160 |
| Msa0677470 | AT1G76790.1 | 34.897 | 341 | 191 | 12 | 45 | 365 | 33 | 362 | 5.41e-44 | 156 |
| Msa0677470 | AT5G37170.3 | 40.110 | 182 | 104 | 4 | 187 | 365 | 4 | 183 | 1.96e-42 | 146 |
| Msa0677470 | AT1G33030.2 | 34.599 | 237 | 138 | 9 | 44 | 270 | 23 | 252 | 4.51e-28 | 111 |
| Msa0677470 | AT1G33030.3 | 34.599 | 237 | 138 | 9 | 44 | 270 | 23 | 252 | 9.03e-28 | 110 |
| Msa0677470 | AT1G63140.1 | 31.752 | 274 | 167 | 8 | 11 | 270 | 35 | 302 | 1.61e-27 | 110 |
| Msa0677470 | AT1G21130.2 | 34.025 | 241 | 137 | 10 | 44 | 270 | 42 | 274 | 5.82e-22 | 95.1 |
| Msa0677470 | AT1G63140.3 | 29.644 | 253 | 158 | 8 | 11 | 249 | 35 | 281 | 4.94e-18 | 84.0 |
| Msa0677470 | AT1G77530.2 | 30.566 | 265 | 160 | 11 | 5 | 249 | 1 | 261 | 7.06e-18 | 83.2 |
Find 91 sgRNAs with CRISPR-Local
Find 402 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCTTCTGCCTTTA+AGG | 0.066983 | 4_4:+31355521 | Msa0677470:CDS |
| TTAAACAACTCATTGAATTT+TGG | 0.113417 | 4_4:-31359070 | None:intergenic |
| CATCAACCAATGTTTGAATT+TGG | 0.182200 | 4_4:-31359162 | None:intergenic |
| ATTTCACTCATAAAGTTAAA+AGG | 0.207818 | 4_4:-31358968 | None:intergenic |
| TGCTTGGACAAATTGAAATA+TGG | 0.256837 | 4_4:+31358624 | Msa0677470:CDS |
| TCAACATCCACGCACCTTAA+AGG | 0.284260 | 4_4:-31355535 | None:intergenic |
| AAAATGGCACTGCTTTCTTT+AGG | 0.298524 | 4_4:+31359008 | Msa0677470:CDS |
| ATGTGTTGTGTGACTTTACT+TGG | 0.299093 | 4_4:+31361146 | Msa0677470:three_prime_UTR |
| ATTAGTTAAGTGAAATAAAA+AGG | 0.312067 | 4_4:-31361371 | None:intergenic |
| GCTATGCCAATGTCAGTAAA+TGG | 0.312596 | 4_4:-31360916 | None:intergenic |
| GTTGATGTTGGTGGTGGTAT+TGG | 0.312678 | 4_4:+31359178 | Msa0677470:CDS |
| GCTTGACACGTGCATCAAAA+TGG | 0.313818 | 4_4:+31358876 | Msa0677470:CDS |
| CAACACTAGCCATTTCAAAT+TGG | 0.315929 | 4_4:-31359045 | None:intergenic |
| ATTCTGCACAATTTGAGTTA+AGG | 0.365186 | 4_4:-31358741 | None:intergenic |
| GTAAATGGTTCATCTCCTTC+TGG | 0.366037 | 4_4:-31360901 | None:intergenic |
| AACAGGAAAGGTGATAATAT+TGG | 0.375818 | 4_4:+31360864 | Msa0677470:CDS |
| GAAAATCATAATGAGTTTGT+TGG | 0.386525 | 4_4:+31361094 | Msa0677470:three_prime_UTR |
| GGCAGAAGGTGGAGAATGAT+TGG | 0.387813 | 4_4:-31355514 | None:intergenic |
| GTGTTTAGAGCTGTTATTGC+TGG | 0.403865 | 4_4:+31359121 | Msa0677470:CDS |
| GATTGGAAATGCTTCAATGA+TGG | 0.406919 | 4_4:-31361064 | None:intergenic |
| AAAGGACAAGCATGCACAAC+TGG | 0.416268 | 4_4:+31359094 | Msa0677470:CDS |
| TGGTTATGACCAATTTGAAA+TGG | 0.426665 | 4_4:+31359036 | Msa0677470:CDS |
| GATAATATTGGATCATGTAT+TGG | 0.435063 | 4_4:+31360876 | Msa0677470:CDS |
| CTTAAAAGTAGAGTGGAATC+AGG | 0.438559 | 4_4:-31358782 | None:intergenic |
| ATGAGTGAAATTGTAAAAGA+AGG | 0.441259 | 4_4:+31358980 | Msa0677470:CDS |
| TTAAAAGGGTTCATATGAGT+TGG | 0.444485 | 4_4:-31358953 | None:intergenic |
| TTTCACTCATAAAGTTAAAA+GGG | 0.448814 | 4_4:-31358967 | None:intergenic |
| CTAACAGTGTAACAATTAGA+AGG | 0.449944 | 4_4:-31361399 | None:intergenic |
| ACTGCTTTCTTTAGGTGTCA+TGG | 0.450664 | 4_4:+31359016 | Msa0677470:CDS |
| ATGGGTGATGCCATCATACT+TGG | 0.452889 | 4_4:-31359284 | None:intergenic |
| TAAAAGGGTTCATATGAGTT+GGG | 0.453853 | 4_4:-31358952 | None:intergenic |
| CTCACACAACAATCTGCATA+TGG | 0.465615 | 4_4:-31361280 | None:intergenic |
| GTTATTGCTGGATACAAAGA+TGG | 0.468883 | 4_4:+31359133 | Msa0677470:CDS |
| GCAAATCAAAATTAATACCT+TGG | 0.471241 | 4_4:-31359240 | None:intergenic |
| AAGGCAATACCAGAGAAAAC+AGG | 0.476074 | 4_4:+31360847 | Msa0677470:CDS |
| AGGAAAGGACTGAAGAGAAC+TGG | 0.477263 | 4_4:+31360977 | Msa0677470:CDS |
| AAAAGTGACATTGGCACCAT+TGG | 0.485135 | 4_4:+31358913 | Msa0677470:CDS |
| GATGAACCATTTACTGACAT+TGG | 0.495764 | 4_4:+31360910 | Msa0677470:CDS |
| TGCACACAACTCTGGTGGTA+AGG | 0.502617 | 4_4:+31360957 | Msa0677470:CDS |
| GAACATGTCTCCTCCAACAT+GGG | 0.506646 | 4_4:-31359302 | None:intergenic |
| GATGTTGGTGGTGGTATTGG+CGG | 0.508464 | 4_4:+31359181 | Msa0677470:CDS |
| TTTAAGAGTAATGAGAGTAA+TGG | 0.509813 | 4_4:+31358799 | Msa0677470:CDS |
| AGATACTTATTCAAAGAGAC+AGG | 0.514708 | 4_4:+31361000 | Msa0677470:CDS |
| GGTAGTGGATTCTTCATGAC+TGG | 0.515619 | 4_4:+31360785 | Msa0677470:intron |
| ATTTAACCAAATTCAAACAT+TGG | 0.521052 | 4_4:+31359156 | Msa0677470:CDS |
| TTCAATGAGTTGTTTAACAA+AGG | 0.521127 | 4_4:+31359076 | Msa0677470:CDS |
| CTAGGGTGTGAGCAAGGAAG+AGG | 0.523226 | 4_4:+31358592 | Msa0677470:intron |
| CAAACATTGGTTGATGTTGG+TGG | 0.526942 | 4_4:+31359169 | Msa0677470:CDS |
| AGCTAGTTATGATTCATGCA+TGG | 0.529631 | 4_4:+31361242 | Msa0677470:three_prime_UTR |
| ATTCAAACATTGGTTGATGT+TGG | 0.530112 | 4_4:+31359166 | Msa0677470:CDS |
| TCTTCAATATCTTTATGCAA+TGG | 0.534210 | 4_4:-31360816 | None:intergenic |
| TAAAGATATTGAAGAACTGT+AGG | 0.535387 | 4_4:+31360824 | Msa0677470:CDS |
| TGCTGATGCTATTTACATCA+AGG | 0.535867 | 4_4:+31359339 | Msa0677470:CDS |
| CGAACATGTCTCCTCCAACA+TGG | 0.536309 | 4_4:-31359303 | None:intergenic |
| AATTAATACCTTGGATGTGA+GGG | 0.541352 | 4_4:-31359231 | None:intergenic |
| TCAACGGCACCCAAGTATGA+TGG | 0.541751 | 4_4:+31359274 | Msa0677470:CDS |
| AAGTAGAGTGGAATCAGGAG+AGG | 0.545001 | 4_4:-31358777 | None:intergenic |
| GAAGAGGAGGAATCATTGCT+TGG | 0.551152 | 4_4:+31358608 | Msa0677470:CDS |
| TTTGCCTCATGTTGTTTCAA+CGG | 0.559425 | 4_4:+31359258 | Msa0677470:CDS |
| AAATTAATACCTTGGATGTG+AGG | 0.559777 | 4_4:-31359232 | None:intergenic |
| GATGGCATCACCCATGTTGG+AGG | 0.561480 | 4_4:+31359292 | Msa0677470:CDS |
| GCTAGTTATGATTCATGCAT+GGG | 0.561936 | 4_4:+31361243 | Msa0677470:three_prime_UTR |
| ATATTGTTTGCACACAACTC+TGG | 0.563913 | 4_4:+31360949 | Msa0677470:CDS |
| TATGATGGCATCACCCATGT+TGG | 0.578808 | 4_4:+31359289 | Msa0677470:CDS |
| TTATTGAGATTATGATACAA+TGG | 0.586491 | 4_4:-31361199 | None:intergenic |
| ACAAGACACAAAAGTGACAT+TGG | 0.586673 | 4_4:+31358904 | Msa0677470:CDS |
| GGGTGTGAGCAAGGAAGAGG+AGG | 0.586759 | 4_4:+31358595 | Msa0677470:intron |
| CATTACTCTTAAAAGTAGAG+TGG | 0.588009 | 4_4:-31358789 | None:intergenic |
| ATGTAAATAGCATCAGCACT+AGG | 0.594614 | 4_4:-31359334 | None:intergenic |
| GATATTGAAGAACTGTAGGA+AGG | 0.597258 | 4_4:+31360828 | Msa0677470:CDS |
| TGAATCATAACTAGCTCTAG+AGG | 0.601190 | 4_4:-31361235 | None:intergenic |
| ACATTGGTTGATGTTGGTGG+TGG | 0.602342 | 4_4:+31359172 | Msa0677470:CDS |
| AGGATAGCGGTTTACACTGA+CGG | 0.604044 | 4_4:-31358721 | None:intergenic |
| AGTGTAACAATTAGAAGGAG+AGG | 0.608263 | 4_4:-31361394 | None:intergenic |
| CGCACCTTAAAGGCAGAAGG+TGG | 0.612114 | 4_4:-31355525 | None:intergenic |
| AGTAGAGTGGAATCAGGAGA+GGG | 0.613280 | 4_4:-31358776 | None:intergenic |
| AAAGCTTACCCTCACATCCA+AGG | 0.615664 | 4_4:+31359223 | Msa0677470:CDS |
| ACAACTCTGGTGGTAAGGAA+AGG | 0.616165 | 4_4:+31360962 | Msa0677470:CDS |
| AAATGACTAGGGTGTGAGCA+AGG | 0.619206 | 4_4:+31358586 | Msa0677470:intron |
| ACAATTTGAGTTAAGGATAG+CGG | 0.620633 | 4_4:-31358734 | None:intergenic |
| TTGTTTGCACACAACTCTGG+TGG | 0.628395 | 4_4:+31360952 | Msa0677470:CDS |
| CCACGCACCTTAAAGGCAGA+AGG | 0.632006 | 4_4:-31355528 | None:intergenic |
| GAAACCGGCGAAATTCTCTA+CGG | 0.639770 | 4_4:+31358854 | Msa0677470:CDS |
| GAATCATAACTAGCTCTAGA+GGG | 0.642526 | 4_4:-31361234 | None:intergenic |
| CAAGCCGTAGAGAATTTCGC+CGG | 0.643000 | 4_4:-31358858 | None:intergenic |
| GATCATGTATTGGATCCAGA+AGG | 0.647337 | 4_4:+31360886 | Msa0677470:CDS |
| TGAGTCTCTAGTAACACCAA+TGG | 0.648452 | 4_4:-31358929 | None:intergenic |
| TGGGTGATGCCATCATACTT+GGG | 0.669553 | 4_4:-31359283 | None:intergenic |
| AATACCAGAGAAAACAGGAA+AGG | 0.671132 | 4_4:+31360852 | Msa0677470:CDS |
| ACACACTAACAAGTCAACAG+TGG | 0.683258 | 4_4:-31361313 | None:intergenic |
| GGTGCCGTTGAAACAACATG+AGG | 0.720627 | 4_4:-31359262 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATTAATTTTAAAA+AGG | - | chr4_4:31356357-31356376 | None:intergenic | 0.0% |
| !!! | AATATATAATTTTAAAATAT+TGG | - | chr4_4:31358379-31358398 | None:intergenic | 0.0% |
| !! | TTCAATATATATATATATAG+GGG | - | chr4_4:31356063-31356082 | None:intergenic | 10.0% |
| !! | GTTCAATATATATATATATA+GGG | - | chr4_4:31356064-31356083 | None:intergenic | 10.0% |
| !! | AGTTCAATATATATATATAT+AGG | - | chr4_4:31356065-31356084 | None:intergenic | 10.0% |
| !! | TTAAAAAAATCAATAATTTG+AGG | + | chr4_4:31356640-31356659 | Msa0677470:intron | 10.0% |
| !!! | TATAAATTTTATAGTTTTTG+CGG | + | chr4_4:31357809-31357828 | Msa0677470:intron | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | + | chr4_4:31357860-31357879 | Msa0677470:intron | 10.0% |
| !!! | ACAATTTCTTTTTTTTTTTA+GGG | - | chr4_4:31358436-31358455 | None:intergenic | 10.0% |
| !!! | TACAATTTCTTTTTTTTTTT+AGG | - | chr4_4:31358437-31358456 | None:intergenic | 10.0% |
| !! | AAGTAATGTATAAATTTAAT+TGG | - | chr4_4:31358528-31358547 | None:intergenic | 10.0% |
| !!! | GTTAATTCTATTTTATTATA+GGG | - | chr4_4:31360560-31360579 | None:intergenic | 10.0% |
| !!! | TGTTAATTCTATTTTATTAT+AGG | - | chr4_4:31360561-31360580 | None:intergenic | 10.0% |
| !! | AATAAAATAGAATTAACAAT+CGG | + | chr4_4:31360563-31360582 | Msa0677470:intron | 10.0% |
| !! | AATTAGGATTGTTAATTATT+TGG | - | chr4_4:31355641-31355660 | None:intergenic | 15.0% |
| !!! | ATAATTAACAATCCTAATTT+TGG | + | chr4_4:31355642-31355661 | Msa0677470:intron | 15.0% |
| !! | TATATATATATATTGAACTG+TGG | + | chr4_4:31356066-31356085 | Msa0677470:intron | 15.0% |
| !! | ATATAAGTAATATATGCATT+TGG | + | chr4_4:31356504-31356523 | Msa0677470:intron | 15.0% |
| !! | GAATTAAACATGAATTAAAT+TGG | - | chr4_4:31357730-31357749 | None:intergenic | 15.0% |
| !! | AACAAAACATGAATTAAATA+CGG | - | chr4_4:31357843-31357862 | None:intergenic | 15.0% |
| !!! | ACATGATTTGTTTTAAAAAT+AGG | + | chr4_4:31357944-31357963 | Msa0677470:intron | 15.0% |
| !!! | CATGATTTGTTTTAAAAATA+GGG | + | chr4_4:31357945-31357964 | Msa0677470:intron | 15.0% |
| !!! | AATGAAATTCACTAATTTTT+GGG | - | chr4_4:31358077-31358096 | None:intergenic | 15.0% |
| !!! | TAATGAAATTCACTAATTTT+TGG | - | chr4_4:31358078-31358097 | None:intergenic | 15.0% |
| !! | TGTTTGAAAAAAAATATTAG+AGG | + | chr4_4:31358316-31358335 | Msa0677470:intron | 15.0% |
| !! | TATAAACTGTGATTAATAAT+GGG | - | chr4_4:31358567-31358586 | None:intergenic | 15.0% |
| !! | TTATAAACTGTGATTAATAA+TGG | - | chr4_4:31358568-31358587 | None:intergenic | 15.0% |
| !! | TACTAAATATACGTTATAAA+TGG | + | chr4_4:31359536-31359555 | Msa0677470:intron | 15.0% |
| !!! | AAATACGTCTTTTAAATTTT+AGG | + | chr4_4:31359739-31359758 | Msa0677470:intron | 15.0% |
| !!! | GAACTCATAATAATTTTATT+GGG | - | chr4_4:31359888-31359907 | None:intergenic | 15.0% |
| !!! | TGAACTCATAATAATTTTAT+TGG | - | chr4_4:31359889-31359908 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr4_4:31360194-31360213 | None:intergenic | 15.0% |
| !! | AAATTATCCATATTAACTAT+TGG | - | chr4_4:31360218-31360237 | None:intergenic | 15.0% |
| !! | AATAGTTAATATGGATAATT+TGG | + | chr4_4:31360217-31360236 | Msa0677470:intron | 15.0% |
| !!! | TGTTTTTTTAACTAGTATTT+TGG | + | chr4_4:31360437-31360456 | Msa0677470:intron | 15.0% |
| !!! | GTTTTTTTAACTAGTATTTT+GGG | + | chr4_4:31360438-31360457 | Msa0677470:intron | 15.0% |
| !!! | AAGCCTTTATTTTATTTTTT+CGG | - | chr4_4:31360521-31360540 | None:intergenic | 15.0% |
| !! | TAGAATTAGTTGAATATTAA+CGG | + | chr4_4:31360683-31360702 | Msa0677470:intron | 15.0% |
| !! | GTCTAACTATAAATATAAAA+TGG | + | chr4_4:31360705-31360724 | Msa0677470:intron | 15.0% |
| !! | ATTAGTTAAGTGAAATAAAA+AGG | - | chr4_4:31361374-31361393 | None:intergenic | 15.0% |
| !! | TAAAAAGTGGTTAATTACAT+AGG | + | chr4_4:31355985-31356004 | Msa0677470:intron | 20.0% |
| !! | AAAAAGTGGTTAATTACATA+GGG | + | chr4_4:31355986-31356005 | Msa0677470:intron | 20.0% |
| !! | TTCTAACAATAAATCTTGAT+TGG | + | chr4_4:31356816-31356835 | Msa0677470:intron | 20.0% |
| !! | ATTATCACTTATGTATCATT+GGG | + | chr4_4:31356941-31356960 | Msa0677470:intron | 20.0% |
| !! | ATATATGCATATGAAGAAAA+AGG | + | chr4_4:31357036-31357055 | Msa0677470:intron | 20.0% |
| !!! | TGGTGATTGTAAATTTTATA+GGG | + | chr4_4:31357976-31357995 | Msa0677470:intron | 20.0% |
| !! | TTAGTGAATTTCATTAAGAT+AGG | + | chr4_4:31358082-31358101 | Msa0677470:intron | 20.0% |
| !! | ACAAAAGATGATACATTTAT+AGG | - | chr4_4:31358212-31358231 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCATTGATAA+AGG | - | chr4_4:31358268-31358287 | None:intergenic | 20.0% |
| !! | TTTCACTCATAAAGTTAAAA+GGG | - | chr4_4:31358970-31358989 | None:intergenic | 20.0% |
| !! | ATTTCACTCATAAAGTTAAA+AGG | - | chr4_4:31358971-31358990 | None:intergenic | 20.0% |
| !!! | TAAACAACTCATTGAATTTT+GGG | - | chr4_4:31359072-31359091 | None:intergenic | 20.0% |
| !!! | TTAAACAACTCATTGAATTT+TGG | - | chr4_4:31359073-31359092 | None:intergenic | 20.0% |
| !! | ATTTAACCAAATTCAAACAT+TGG | + | chr4_4:31359156-31359175 | Msa0677470:CDS | 20.0% |
| !! | AAAAAAAATCCAAAAGTTTG+TGG | - | chr4_4:31359828-31359847 | None:intergenic | 20.0% |
| !!! | ATAATAATTTTATTGGGTGA+TGG | - | chr4_4:31359882-31359901 | None:intergenic | 20.0% |
| !! | AAAGAGAAAAATGTAGTATT+AGG | - | chr4_4:31360006-31360025 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+TGG | + | chr4_4:31360208-31360227 | Msa0677470:intron | 20.0% |
| !!! | AATATATAAGTTTTGCATTG+AGG | - | chr4_4:31360409-31360428 | None:intergenic | 20.0% |
| !! | TACCCGAAAAAATAAAATAA+AGG | + | chr4_4:31360515-31360534 | Msa0677470:intron | 20.0% |
| !!! | AGCCTTTATTTTATTTTTTC+GGG | - | chr4_4:31360520-31360539 | None:intergenic | 20.0% |
| !!! | AATGAATATTTTTGTGTGAA+TGG | + | chr4_4:31360763-31360782 | Msa0677470:intron | 20.0% |
| !!! | ATGAATATTTTTGTGTGAAT+GGG | + | chr4_4:31360764-31360783 | Msa0677470:intron | 20.0% |
| !!! | TATGATTTTCGAATTTAGAT+TGG | - | chr4_4:31361084-31361103 | None:intergenic | 20.0% |
| !! | TTATTGAGATTATGATACAA+TGG | - | chr4_4:31361202-31361221 | None:intergenic | 20.0% |
| !!! | CACACACTAAACATATTTTT+TGG | + | chr4_4:31355585-31355604 | Msa0677470:intron | 25.0% |
| !! | ACTCTTTCTAAAAAGTAAGT+GGG | - | chr4_4:31355716-31355735 | None:intergenic | 25.0% |
| !! | TACTCTTTCTAAAAAGTAAG+TGG | - | chr4_4:31355717-31355736 | None:intergenic | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr4_4:31355972-31355991 | Msa0677470:intron | 25.0% |
| ! | AAACACTACATAAAAACTAG+TGG | + | chr4_4:31356022-31356041 | Msa0677470:intron | 25.0% |
| ! | AACACTACATAAAAACTAGT+GGG | + | chr4_4:31356023-31356042 | Msa0677470:intron | 25.0% |
| ! | TCATTATTTGTGTTTGCTTT+AGG | - | chr4_4:31356332-31356351 | None:intergenic | 25.0% |
| ! | TAACAAAATCAACACTTTCA+TGG | + | chr4_4:31356552-31356571 | Msa0677470:intron | 25.0% |
| ! | TATTGATGTGATATTAAGAG+AGG | + | chr4_4:31356713-31356732 | Msa0677470:intron | 25.0% |
| ! | GATTATCACTTATGTATCAT+TGG | + | chr4_4:31356940-31356959 | Msa0677470:intron | 25.0% |
| ! | CTATTGAGATACTAATACAA+TGG | - | chr4_4:31357070-31357089 | None:intergenic | 25.0% |
| ! | CTGACAATATGTTTATAAGT+GGG | + | chr4_4:31357601-31357620 | Msa0677470:intron | 25.0% |
| ! | TGACAATATGTTTATAAGTG+GGG | + | chr4_4:31357602-31357621 | Msa0677470:intron | 25.0% |
| !!! | CTCTGATTTGTTGAAAATTA+GGG | - | chr4_4:31357671-31357690 | None:intergenic | 25.0% |
| ! | ATGTTTAATTCCGTATTCTA+AGG | + | chr4_4:31357739-31357758 | Msa0677470:intron | 25.0% |
| ! | TTAAAAATAGGGATCAAAAG+TGG | + | chr4_4:31357956-31357975 | Msa0677470:intron | 25.0% |
| !! | GTGGTGATTGTAAATTTTAT+AGG | + | chr4_4:31357975-31357994 | Msa0677470:intron | 25.0% |
| !! | ACTAAGTCGAATGAAAATTT+TGG | + | chr4_4:31357999-31358018 | Msa0677470:intron | 25.0% |
| ! | AGGATTATAAACTACTTTCA+TGG | - | chr4_4:31358192-31358211 | None:intergenic | 25.0% |
| !! | TTTTTAATCCCTCTATACAA+TGG | + | chr4_4:31358231-31358250 | Msa0677470:intron | 25.0% |
| ! | AAAAAAACGAACGTAAAAAG+TGG | + | chr4_4:31358339-31358358 | Msa0677470:intron | 25.0% |
| !!! | TTTGTATTCCTTTAAAGTAG+AGG | + | chr4_4:31358462-31358481 | Msa0677470:intron | 25.0% |
| !!! | TTGTATTCCTTTAAAGTAGA+GGG | + | chr4_4:31358463-31358482 | Msa0677470:intron | 25.0% |
| !! | TTTTTACCTTTTTGTGGATT+TGG | - | chr4_4:31358490-31358509 | None:intergenic | 25.0% |
| ! | ATCACAGTTTATAAATGACT+AGG | + | chr4_4:31358574-31358593 | Msa0677470:intron | 25.0% |
| ! | TCACAGTTTATAAATGACTA+GGG | + | chr4_4:31358575-31358594 | Msa0677470:intron | 25.0% |
| ! | TTTAAGAGTAATGAGAGTAA+TGG | + | chr4_4:31358799-31358818 | Msa0677470:CDS | 25.0% |
| ! | ATGAGTGAAATTGTAAAAGA+AGG | + | chr4_4:31358980-31358999 | Msa0677470:CDS | 25.0% |
| ! | TTCAATGAGTTGTTTAACAA+AGG | + | chr4_4:31359076-31359095 | Msa0677470:CDS | 25.0% |
| ! | GCAAATCAAAATTAATACCT+TGG | - | chr4_4:31359243-31359262 | None:intergenic | 25.0% |
| !! | TCGATGAATTTTGTCTATTT+TGG | + | chr4_4:31359612-31359631 | Msa0677470:intron | 25.0% |
| !! | CGATGAATTTTGTCTATTTT+GGG | + | chr4_4:31359613-31359632 | Msa0677470:intron | 25.0% |
| !!! | CTGAATTTTAGGATTTAAGT+CGG | + | chr4_4:31359684-31359703 | Msa0677470:intron | 25.0% |
| !!! | TGAATTTTAGGATTTAAGTC+GGG | + | chr4_4:31359685-31359704 | Msa0677470:intron | 25.0% |
| ! | AATGAGTAAAAGAAAGAGAA+TGG | - | chr4_4:31360251-31360270 | None:intergenic | 25.0% |
| ! | AATGAGAGTCAAATACATAT+AGG | - | chr4_4:31360357-31360376 | None:intergenic | 25.0% |
| ! | TCTTCAATATCTTTATGCAA+TGG | - | chr4_4:31360819-31360838 | None:intergenic | 25.0% |
| ! | TAAAGATATTGAAGAACTGT+AGG | + | chr4_4:31360824-31360843 | Msa0677470:CDS | 25.0% |
| ! | GATAATATTGGATCATGTAT+TGG | + | chr4_4:31360876-31360895 | Msa0677470:CDS | 25.0% |
| ! | GAAAATCATAATGAGTTTGT+TGG | + | chr4_4:31361094-31361113 | Msa0677470:three_prime_UTR | 25.0% |
| ACAATACTAAGGCCAAAATT+AGG | - | chr4_4:31355657-31355676 | None:intergenic | 30.0% | |
| GCAAGTGAATAACTAAAAAG+TGG | + | chr4_4:31355742-31355761 | Msa0677470:intron | 30.0% | |
| TTATAGCAACATACACCTTA+GGG | - | chr4_4:31355858-31355877 | None:intergenic | 30.0% | |
| ACCTTCTAACAAAAACAAGT+GGG | + | chr4_4:31355881-31355900 | Msa0677470:intron | 30.0% | |
| ! | AAGAACTTTTGCAGTTAATG+TGG | - | chr4_4:31356138-31356157 | None:intergenic | 30.0% |
| TAACTGCAAAAGTTCTTCTA+TGG | + | chr4_4:31356141-31356160 | Msa0677470:intron | 30.0% | |
| ! | GGGTATAATTGTTGTTAAGA+AGG | + | chr4_4:31356166-31356185 | Msa0677470:intron | 30.0% |
| TATCGTCTCAATCAATATAG+CGG | + | chr4_4:31356306-31356325 | Msa0677470:intron | 30.0% | |
| TTAATGCATCACATTCACAA+AGG | + | chr4_4:31356918-31356937 | Msa0677470:intron | 30.0% | |
| AAGTGATATCCCATCATAAA+TGG | + | chr4_4:31357095-31357114 | Msa0677470:intron | 30.0% | |
| CTTGATGAGAGTTTATAAAG+AGG | + | chr4_4:31357177-31357196 | Msa0677470:intron | 30.0% | |
| CCACTTATAAACATATTGTC+AGG | - | chr4_4:31357603-31357622 | None:intergenic | 30.0% | |
| CCTGACAATATGTTTATAAG+TGG | + | chr4_4:31357600-31357619 | Msa0677470:intron | 30.0% | |
| GACAATATGTTTATAAGTGG+GGG | + | chr4_4:31357603-31357622 | Msa0677470:intron | 30.0% | |
| CTAACTCTTCCTTACAAAAT+CGG | - | chr4_4:31357647-31357666 | None:intergenic | 30.0% | |
| !! | GCTCTGATTTGTTGAAAATT+AGG | - | chr4_4:31357672-31357691 | None:intergenic | 30.0% |
| AATTAAATTGGTGCGTGAAT+AGG | - | chr4_4:31357718-31357737 | None:intergenic | 30.0% | |
| !! | TTTAGCTCTTCCTTAGAATA+CGG | - | chr4_4:31357752-31357771 | None:intergenic | 30.0% |
| ! | AAGTCGAATGAAAATTTTGG+AGG | + | chr4_4:31358002-31358021 | Msa0677470:intron | 30.0% |
| ! | AGTCGAATGAAAATTTTGGA+GGG | + | chr4_4:31358003-31358022 | Msa0677470:intron | 30.0% |
| ATCCACAAAAAGGTAAAAAC+TGG | + | chr4_4:31358491-31358510 | Msa0677470:intron | 30.0% | |
| TCCACAAAAAGGTAAAAACT+GGG | + | chr4_4:31358492-31358511 | Msa0677470:intron | 30.0% | |
| ! | AACTGTGATTAATAATGGGA+TGG | - | chr4_4:31358563-31358582 | None:intergenic | 30.0% |
| TGCTTGGACAAATTGAAATA+TGG | + | chr4_4:31358624-31358643 | Msa0677470:CDS | 30.0% | |
| ! | ACAATTTGAGTTAAGGATAG+CGG | - | chr4_4:31358737-31358756 | None:intergenic | 30.0% |
| ! | ATTCTGCACAATTTGAGTTA+AGG | - | chr4_4:31358744-31358763 | None:intergenic | 30.0% |
| CATTACTCTTAAAAGTAGAG+TGG | - | chr4_4:31358792-31358811 | None:intergenic | 30.0% | |
| TAAAAGGGTTCATATGAGTT+GGG | - | chr4_4:31358955-31358974 | None:intergenic | 30.0% | |
| TTAAAAGGGTTCATATGAGT+TGG | - | chr4_4:31358956-31358975 | None:intergenic | 30.0% | |
| ! | GTAAAAGAAGGCACAAAAAA+TGG | + | chr4_4:31358992-31359011 | Msa0677470:CDS | 30.0% |
| TGGTTATGACCAATTTGAAA+TGG | + | chr4_4:31359036-31359055 | Msa0677470:CDS | 30.0% | |
| CATCAACCAATGTTTGAATT+TGG | - | chr4_4:31359165-31359184 | None:intergenic | 30.0% | |
| ! | ATTCAAACATTGGTTGATGT+TGG | + | chr4_4:31359166-31359185 | Msa0677470:CDS | 30.0% |
| AATTAATACCTTGGATGTGA+GGG | - | chr4_4:31359234-31359253 | None:intergenic | 30.0% | |
| AAATTAATACCTTGGATGTG+AGG | - | chr4_4:31359235-31359254 | None:intergenic | 30.0% | |
| ATGATCGTATATACTAACCA+AGG | + | chr4_4:31359386-31359405 | Msa0677470:intron | 30.0% | |
| TAACCAAGGTTATCAAAATC+AGG | + | chr4_4:31359400-31359419 | Msa0677470:intron | 30.0% | |
| AAAATCGCATTCAAAATCGA+AGG | + | chr4_4:31359429-31359448 | Msa0677470:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | + | chr4_4:31359442-31359461 | Msa0677470:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | + | chr4_4:31359494-31359513 | Msa0677470:intron | 30.0% | |
| !!! | TCTATTTTGGGATTCTACTA+TGG | + | chr4_4:31359625-31359644 | Msa0677470:intron | 30.0% |
| CGACTTAAATCCTAAAATTC+AGG | - | chr4_4:31359686-31359705 | None:intergenic | 30.0% | |
| ! | TGTTATAGATAGTTTGAGAC+AGG | + | chr4_4:31359765-31359784 | Msa0677470:intron | 30.0% |
| ! | GTTATAGATAGTTTGAGACA+GGG | + | chr4_4:31359766-31359785 | Msa0677470:intron | 30.0% |
| ! | TTATAGATAGTTTGAGACAG+GGG | + | chr4_4:31359767-31359786 | Msa0677470:intron | 30.0% |
| AAAAATCCAAAAGTTTGTGG+AGG | - | chr4_4:31359825-31359844 | None:intergenic | 30.0% | |
| !! | AAGTGACACTCATTTTGAAA+CGG | - | chr4_4:31360074-31360093 | None:intergenic | 30.0% |
| !!! | AGTGACATTCATTTTGAAAC+TGG | - | chr4_4:31360100-31360119 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+TGG | - | chr4_4:31360165-31360184 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | - | chr4_4:31360169-31360188 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr4_4:31360297-31360316 | None:intergenic | 30.0% |
| AACAGGAAAGGTGATAATAT+TGG | + | chr4_4:31360864-31360883 | Msa0677470:CDS | 30.0% | |
| AGATACTTATTCAAAGAGAC+AGG | + | chr4_4:31361000-31361019 | Msa0677470:CDS | 30.0% | |
| !!! | TTTTGATGATGTTGTAACGA+GGG | - | chr4_4:31361029-31361048 | None:intergenic | 30.0% |
| !!! | ATTTTGATGATGTTGTAACG+AGG | - | chr4_4:31361030-31361049 | None:intergenic | 30.0% |
| !!! | GACTTTTGTTTTGTTAGCTA+AGG | + | chr4_4:31361168-31361187 | Msa0677470:three_prime_UTR | 30.0% |
| CGCAATTTAGCACAATACTA+AGG | - | chr4_4:31355668-31355687 | None:intergenic | 35.0% | |
| TAAATTGCGCTTATGAGAAG+TGG | + | chr4_4:31355679-31355698 | Msa0677470:intron | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr4_4:31355759-31355778 | Msa0677470:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | - | chr4_4:31355777-31355796 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAAGCTACACCTT+AGG | - | chr4_4:31355778-31355797 | None:intergenic | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | chr4_4:31355799-31355818 | Msa0677470:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr4_4:31355940-31355959 | None:intergenic | 35.0% |
| GTTATAGCAACATACACCTT+AGG | - | chr4_4:31355859-31355878 | None:intergenic | 35.0% | |
| CACCTTCTAACAAAAACAAG+TGG | + | chr4_4:31355880-31355899 | Msa0677470:intron | 35.0% | |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | - | chr4_4:31355885-31355904 | None:intergenic | 35.0% |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr4_4:31355904-31355923 | Msa0677470:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr4_4:31355940-31355959 | Msa0677470:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr4_4:31355799-31355818 | None:intergenic | 35.0% | |
| TGCAAAAGTTCTTCTATGGA+AGG | + | chr4_4:31356145-31356164 | Msa0677470:intron | 35.0% | |
| GCAAAAGTTCTTCTATGGAA+GGG | + | chr4_4:31356146-31356165 | Msa0677470:intron | 35.0% | |
| ! | CTTTCTCTCACTTTGTTTCA+AGG | - | chr4_4:31356252-31356271 | None:intergenic | 35.0% |
| CAAAGTGAGAGAAAGAGAAA+AGG | + | chr4_4:31356257-31356276 | Msa0677470:intron | 35.0% | |
| ! | GTCTAAAGCAAGAGCTTTAT+TGG | + | chr4_4:31356662-31356681 | Msa0677470:intron | 35.0% |
| TCTTCCTTAGATTGATTACG+TGG | - | chr4_4:31357004-31357023 | None:intergenic | 35.0% | |
| TAAGTGGAGCCATTTATGAT+GGG | - | chr4_4:31357107-31357126 | None:intergenic | 35.0% | |
| ATAAGTGGAGCCATTTATGA+TGG | - | chr4_4:31357108-31357127 | None:intergenic | 35.0% | |
| ! | TCCACTTATGTGGTTTGTAT+TGG | + | chr4_4:31357119-31357138 | Msa0677470:intron | 35.0% |
| ! | CCACTTATGTGGTTTGTATT+GGG | + | chr4_4:31357120-31357139 | Msa0677470:intron | 35.0% |
| GATGAGAGTTTATAAAGAGG+AGG | + | chr4_4:31357180-31357199 | Msa0677470:intron | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | - | chr4_4:31357253-31357272 | None:intergenic | 35.0% | |
| ! | CGATTTTGTAAGGAAGAGTT+AGG | + | chr4_4:31357645-31357664 | Msa0677470:intron | 35.0% |
| GTATACTCCACAACATTATG+AGG | + | chr4_4:31358104-31358123 | Msa0677470:intron | 35.0% | |
| AGTTGTTCCTCATAATGTTG+TGG | - | chr4_4:31358114-31358133 | None:intergenic | 35.0% | |
| ATTTGGTCCCTCTACTTTAA+AGG | - | chr4_4:31358473-31358492 | None:intergenic | 35.0% | |
| ! | TCCCAGTTTTTACCTTTTTG+TGG | - | chr4_4:31358496-31358515 | None:intergenic | 35.0% |
| !!! | TTTTGCTCTAAAAGCAGTTG+TGG | + | chr4_4:31358673-31358692 | Msa0677470:CDS | 35.0% |
| CTTAAAAGTAGAGTGGAATC+AGG | - | chr4_4:31358785-31358804 | None:intergenic | 35.0% | |
| AGTGCAGAAAAATCAGAAAC+CGG | + | chr4_4:31358839-31358858 | Msa0677470:CDS | 35.0% | |
| ACAAGACACAAAAGTGACAT+TGG | + | chr4_4:31358904-31358923 | Msa0677470:CDS | 35.0% | |
| AAAATGGCACTGCTTTCTTT+AGG | + | chr4_4:31359008-31359027 | Msa0677470:CDS | 35.0% | |
| CAACACTAGCCATTTCAAAT+TGG | - | chr4_4:31359048-31359067 | None:intergenic | 35.0% | |
| GTTATTGCTGGATACAAAGA+TGG | + | chr4_4:31359133-31359152 | Msa0677470:CDS | 35.0% | |
| !! | TTTGCCTCATGTTGTTTCAA+CGG | + | chr4_4:31359258-31359277 | Msa0677470:CDS | 35.0% |
| ATGTAAATAGCATCAGCACT+AGG | - | chr4_4:31359337-31359356 | None:intergenic | 35.0% | |
| ! | TGCTGATGCTATTTACATCA+AGG | + | chr4_4:31359339-31359358 | Msa0677470:CDS | 35.0% |
| !! | AGTCCTGATTTTGATAACCT+TGG | - | chr4_4:31359406-31359425 | None:intergenic | 35.0% |
| CTATGGATTTAAGTCGTTGA+TGG | + | chr4_4:31359642-31359661 | Msa0677470:intron | 35.0% | |
| ! | GTCGCAAAATCCTGAATTTT+AGG | + | chr4_4:31359673-31359692 | Msa0677470:intron | 35.0% |
| TGTTTACTCATATAGGAGCT+TGG | - | chr4_4:31360328-31360347 | None:intergenic | 35.0% | |
| GAGCTTGTGTTTACTCATAT+AGG | - | chr4_4:31360335-31360354 | None:intergenic | 35.0% | |
| !! | AGCCAGAAATTTTGAGAAGT+GGG | - | chr4_4:31360641-31360660 | None:intergenic | 35.0% |
| !! | TAGCCAGAAATTTTGAGAAG+TGG | - | chr4_4:31360642-31360661 | None:intergenic | 35.0% |
| ! | ATTTTTGTGTGAATGGGTAG+TGG | + | chr4_4:31360770-31360789 | Msa0677470:intron | 35.0% |
| GATATTGAAGAACTGTAGGA+AGG | + | chr4_4:31360828-31360847 | Msa0677470:CDS | 35.0% | |
| AATACCAGAGAAAACAGGAA+AGG | + | chr4_4:31360852-31360871 | Msa0677470:CDS | 35.0% | |
| GATGAACCATTTACTGACAT+TGG | + | chr4_4:31360910-31360929 | Msa0677470:CDS | 35.0% | |
| ATATTGTTTGCACACAACTC+TGG | + | chr4_4:31360949-31360968 | Msa0677470:CDS | 35.0% | |
| GATTGGAAATGCTTCAATGA+TGG | - | chr4_4:31361067-31361086 | None:intergenic | 35.0% | |
| ATGTGTTGTGTGACTTTACT+TGG | + | chr4_4:31361146-31361165 | Msa0677470:three_prime_UTR | 35.0% | |
| !! | GAATCATAACTAGCTCTAGA+GGG | - | chr4_4:31361237-31361256 | None:intergenic | 35.0% |
| !! | TGAATCATAACTAGCTCTAG+AGG | - | chr4_4:31361238-31361257 | None:intergenic | 35.0% |
| AGCTAGTTATGATTCATGCA+TGG | + | chr4_4:31361242-31361261 | Msa0677470:three_prime_UTR | 35.0% | |
| GCTAGTTATGATTCATGCAT+GGG | + | chr4_4:31361243-31361262 | Msa0677470:three_prime_UTR | 35.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr4_4:31355798-31355817 | Msa0677470:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr4_4:31355939-31355958 | None:intergenic | 40.0% |
| GTGTTCTAGCAAATGCCTAT+AGG | - | chr4_4:31355922-31355941 | None:intergenic | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr4_4:31355939-31355958 | Msa0677470:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr4_4:31355798-31355817 | None:intergenic | 40.0% | |
| CAACAATCTTGTAATGTGCG+CGG | - | chr4_4:31356581-31356600 | None:intergenic | 40.0% | |
| !! | CAAGAGCTTTATTGGCCTAA+TGG | + | chr4_4:31356670-31356689 | Msa0677470:intron | 40.0% |
| CATAAATGGCTCCACTTATG+TGG | + | chr4_4:31357109-31357128 | Msa0677470:intron | 40.0% | |
| CCCAATACAAACCACATAAG+TGG | - | chr4_4:31357123-31357142 | None:intergenic | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | - | chr4_4:31357248-31357267 | None:intergenic | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | - | chr4_4:31357249-31357268 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | + | chr4_4:31357684-31357703 | Msa0677470:intron | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+GGG | + | chr4_4:31357685-31357704 | Msa0677470:intron | 40.0% | |
| AAATTGGTGCGTGAATAGGT+AGG | - | chr4_4:31357714-31357733 | None:intergenic | 40.0% | |
| TGAGGAACAACTCACAACAA+TGG | + | chr4_4:31358122-31358141 | Msa0677470:intron | 40.0% | |
| GAGGAACAACTCACAACAAT+GGG | + | chr4_4:31358123-31358142 | Msa0677470:intron | 40.0% | |
| CACACATGCCATTGTATAGA+GGG | - | chr4_4:31358242-31358261 | None:intergenic | 40.0% | |
| AAAAGTGACATTGGCACCAT+TGG | + | chr4_4:31358913-31358932 | Msa0677470:CDS | 40.0% | |
| TGAGTCTCTAGTAACACCAA+TGG | - | chr4_4:31358932-31358951 | None:intergenic | 40.0% | |
| ACTGCTTTCTTTAGGTGTCA+TGG | + | chr4_4:31359016-31359035 | Msa0677470:CDS | 40.0% | |
| ! | GTGTTTAGAGCTGTTATTGC+TGG | + | chr4_4:31359121-31359140 | Msa0677470:CDS | 40.0% |
| ! | CAAACATTGGTTGATGTTGG+TGG | + | chr4_4:31359169-31359188 | Msa0677470:CDS | 40.0% |
| TGTTAGTGTGTAACGTGTGT+GGG | - | chr4_4:31359922-31359941 | None:intergenic | 40.0% | |
| ATGTTAGTGTGTAACGTGTG+TGG | - | chr4_4:31359923-31359942 | None:intergenic | 40.0% | |
| !! | TTTGAAACGGAGGGAGTATT+AGG | - | chr4_4:31360061-31360080 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_4:31360070-31360089 | None:intergenic | 40.0% |
| !!! | TGACACTCATTTTGAAACGG+AGG | - | chr4_4:31360071-31360090 | None:intergenic | 40.0% |
| TTGAGGAACACTGCTCATAT+GGG | - | chr4_4:31360392-31360411 | None:intergenic | 40.0% | |
| ATTGAGGAACACTGCTCATA+TGG | - | chr4_4:31360393-31360412 | None:intergenic | 40.0% | |
| !! | CCAGAAATTTTGAGAAGTGG+GGG | - | chr4_4:31360639-31360658 | None:intergenic | 40.0% |
| !! | GCCAGAAATTTTGAGAAGTG+GGG | - | chr4_4:31360640-31360659 | None:intergenic | 40.0% |
| TCTAACACATCTCAAACCAG+TGG | - | chr4_4:31360667-31360686 | None:intergenic | 40.0% | |
| AAGGCAATACCAGAGAAAAC+AGG | + | chr4_4:31360847-31360866 | Msa0677470:CDS | 40.0% | |
| ! | ATCACCTTTCCTGTTTTCTC+TGG | - | chr4_4:31360859-31360878 | None:intergenic | 40.0% |
| GATCATGTATTGGATCCAGA+AGG | + | chr4_4:31360886-31360905 | Msa0677470:CDS | 40.0% | |
| GTAAATGGTTCATCTCCTTC+TGG | - | chr4_4:31360904-31360923 | None:intergenic | 40.0% | |
| GCTATGCCAATGTCAGTAAA+TGG | - | chr4_4:31360919-31360938 | None:intergenic | 40.0% | |
| CTCACACAACAATCTGCATA+TGG | - | chr4_4:31361283-31361302 | None:intergenic | 40.0% | |
| ACACACTAACAAGTCAACAG+TGG | - | chr4_4:31361316-31361335 | None:intergenic | 40.0% | |
| TTCTCCACCTTCTGCCTTTA+AGG | + | chr4_4:31355521-31355540 | Msa0677470:CDS | 45.0% | |
| TCAACATCCACGCACCTTAA+AGG | - | chr4_4:31355538-31355557 | None:intergenic | 45.0% | |
| TAGGGTGTGTGTGTGTGTAT+GGG | - | chr4_4:31355840-31355859 | None:intergenic | 45.0% | |
| TTAGGGTGTGTGTGTGTGTA+TGG | - | chr4_4:31355841-31355860 | None:intergenic | 45.0% | |
| ATACACACACACACACCCTA+AGG | + | chr4_4:31355840-31355859 | Msa0677470:intron | 45.0% | |
| GAGTGTCTCAAGCAACCATT+AGG | - | chr4_4:31356688-31356707 | None:intergenic | 45.0% | |
| TGCGCCACGTAATCAATCTA+AGG | + | chr4_4:31356997-31357016 | Msa0677470:intron | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | + | chr4_4:31357142-31357161 | Msa0677470:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr4_4:31357224-31357243 | None:intergenic | 45.0% | |
| ! | CCCAACCACGATTTCTAAGA+TGG | + | chr4_4:31357245-31357264 | Msa0677470:intron | 45.0% |
| TGCTATCAGGTTTCCGCTAT+CGG | + | chr4_4:31357301-31357320 | Msa0677470:intron | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | - | chr4_4:31357331-31357350 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | - | chr4_4:31357332-31357351 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | - | chr4_4:31357335-31357354 | None:intergenic | 45.0% |
| ! | TTAAGAGTCCCACATCGACT+GGG | + | chr4_4:31357383-31357402 | Msa0677470:intron | 45.0% |
| TGCTATCAGGTTTCCGCTAT+CGG | + | chr4_4:31357301-31357320 | Msa0677470:intron | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | - | chr4_4:31357331-31357350 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | - | chr4_4:31357332-31357351 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | - | chr4_4:31357335-31357354 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | + | chr4_4:31357378-31357397 | Msa0677470:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | + | chr4_4:31357493-31357512 | Msa0677470:intron | 45.0% | |
| GTGTGTTAAGAGTCCCACAT+CGG | + | chr4_4:31357378-31357397 | Msa0677470:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | + | chr4_4:31357493-31357512 | Msa0677470:intron | 45.0% | |
| !! | CCTTACAAAATCGGCTTGTG+AGG | - | chr4_4:31357638-31357657 | None:intergenic | 45.0% |
| !! | CCTCACAAGCCGATTTTGTA+AGG | + | chr4_4:31357635-31357654 | Msa0677470:intron | 45.0% |
| GCACACATGCCATTGTATAG+AGG | - | chr4_4:31358243-31358262 | None:intergenic | 45.0% | |
| GAGGGACCAAATCCACAAAA+AGG | + | chr4_4:31358481-31358500 | Msa0677470:intron | 45.0% | |
| AAATGACTAGGGTGTGAGCA+AGG | + | chr4_4:31358586-31358605 | Msa0677470:intron | 45.0% | |
| GAAGAGGAGGAATCATTGCT+TGG | + | chr4_4:31358608-31358627 | Msa0677470:CDS | 45.0% | |
| ! | AGGATAGCGGTTTACACTGA+CGG | - | chr4_4:31358724-31358743 | None:intergenic | 45.0% |
| AGTAGAGTGGAATCAGGAGA+GGG | - | chr4_4:31358779-31358798 | None:intergenic | 45.0% | |
| AAGTAGAGTGGAATCAGGAG+AGG | - | chr4_4:31358780-31358799 | None:intergenic | 45.0% | |
| GAAACCGGCGAAATTCTCTA+CGG | + | chr4_4:31358854-31358873 | Msa0677470:CDS | 45.0% | |
| GCTTGACACGTGCATCAAAA+TGG | + | chr4_4:31358876-31358895 | Msa0677470:CDS | 45.0% | |
| AAAGGACAAGCATGCACAAC+TGG | + | chr4_4:31359094-31359113 | Msa0677470:CDS | 45.0% | |
| ! | ACATTGGTTGATGTTGGTGG+TGG | + | chr4_4:31359172-31359191 | Msa0677470:CDS | 45.0% |
| !! | GTTGATGTTGGTGGTGGTAT+TGG | + | chr4_4:31359178-31359197 | Msa0677470:CDS | 45.0% |
| AAAGCTTACCCTCACATCCA+AGG | + | chr4_4:31359223-31359242 | Msa0677470:CDS | 45.0% | |
| TGGGTGATGCCATCATACTT+GGG | - | chr4_4:31359286-31359305 | None:intergenic | 45.0% | |
| ATGGGTGATGCCATCATACT+TGG | - | chr4_4:31359287-31359306 | None:intergenic | 45.0% | |
| TATGATGGCATCACCCATGT+TGG | + | chr4_4:31359289-31359308 | Msa0677470:CDS | 45.0% | |
| GAACATGTCTCCTCCAACAT+GGG | - | chr4_4:31359305-31359324 | None:intergenic | 45.0% | |
| ! | TAGATAGTTTGAGACAGGGG+CGG | + | chr4_4:31359770-31359789 | Msa0677470:intron | 45.0% |
| AGCCATATAGGAGCTTGTGT+GGG | + | chr4_4:31359793-31359812 | Msa0677470:intron | 45.0% | |
| ATCCAAAAGTTTGTGGAGGC+AGG | - | chr4_4:31359821-31359840 | None:intergenic | 45.0% | |
| GTTAGTGTGTAACGTGTGTG+GGG | - | chr4_4:31359921-31359940 | None:intergenic | 45.0% | |
| ACACTGCTCATATGGGAGTT+AGG | - | chr4_4:31360385-31360404 | None:intergenic | 45.0% | |
| CCCCCACTTCTCAAAATTTC+TGG | + | chr4_4:31360636-31360655 | Msa0677470:intron | 45.0% | |
| !! | AAAATTTCTGGCTACGCCAC+TGG | + | chr4_4:31360648-31360667 | Msa0677470:intron | 45.0% |
| !! | GGTAGTGGATTCTTCATGAC+TGG | + | chr4_4:31360785-31360804 | Msa0677470:intron | 45.0% |
| TTGTTTGCACACAACTCTGG+TGG | + | chr4_4:31360952-31360971 | Msa0677470:CDS | 45.0% | |
| ACAACTCTGGTGGTAAGGAA+AGG | + | chr4_4:31360962-31360981 | Msa0677470:CDS | 45.0% | |
| AGGAAAGGACTGAAGAGAAC+TGG | + | chr4_4:31360977-31360996 | Msa0677470:CDS | 45.0% | |
| !! | TCATGCATGGGAGCTGTTTT+TGG | + | chr4_4:31361255-31361274 | Msa0677470:three_prime_UTR | 45.0% |
| !!! | TAAAATTAATATTTTTTTGA+TGG | + | chr4_4:31356360-31356379 | Msa0677470:intron | 5.0% |
| !! | TCAAAATTAAATAATAAAAA+AGG | + | chr4_4:31356884-31356903 | Msa0677470:intron | 5.0% |
| !!! | TTAAAAAATTCTAATTTTTT+GGG | + | chr4_4:31357861-31357880 | Msa0677470:intron | 5.0% |
| !!! | ATATTTAGTAATATTTTTTT+GGG | - | chr4_4:31359526-31359545 | None:intergenic | 5.0% |
| !!! | TATATTTAGTAATATTTTTT+TGG | - | chr4_4:31359527-31359546 | None:intergenic | 5.0% |
| GGCAGAAGGTGGAGAATGAT+TGG | - | chr4_4:31355517-31355536 | None:intergenic | 50.0% | |
| GTCTATCCGATGTGGGACTT+GGG | - | chr4_4:31357151-31357170 | None:intergenic | 50.0% | |
| CAAGTCCCACATCGGATAGA+CGG | + | chr4_4:31357150-31357169 | Msa0677470:intron | 50.0% | |
| AAGTCCCACATCGGATAGAC+GGG | + | chr4_4:31357151-31357170 | Msa0677470:intron | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | + | chr4_4:31357211-31357230 | Msa0677470:intron | 50.0% |
| !! | GATAGCGGAAACCTGATAGC+AGG | - | chr4_4:31357302-31357321 | None:intergenic | 50.0% |
| GCTATCAGGTTTCCGCTATC+GGG | + | chr4_4:31357302-31357321 | Msa0677470:intron | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | - | chr4_4:31357328-31357347 | None:intergenic | 50.0% |
| GTTAAGAGTCCCACATCGAC+TGG | + | chr4_4:31357382-31357401 | Msa0677470:intron | 50.0% | |
| !! | GATAGCGGAAACCTGATAGC+AGG | - | chr4_4:31357302-31357321 | None:intergenic | 50.0% |
| GCTATCAGGTTTCCGCTATC+GGG | + | chr4_4:31357302-31357321 | Msa0677470:intron | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | - | chr4_4:31357328-31357347 | None:intergenic | 50.0% |
| !! | CAAAATCGGCTTGTGAGGTG+AGG | - | chr4_4:31357633-31357652 | None:intergenic | 50.0% |
| TTGGTGCGTGAATAGGTAGG+TGG | - | chr4_4:31357711-31357730 | None:intergenic | 50.0% | |
| CAAGCCGTAGAGAATTTCGC+CGG | - | chr4_4:31358861-31358880 | None:intergenic | 50.0% | |
| !! | GATGTTGGTGGTGGTATTGG+CGG | + | chr4_4:31359181-31359200 | Msa0677470:CDS | 50.0% |
| !! | GGTGCCGTTGAAACAACATG+AGG | - | chr4_4:31359265-31359284 | None:intergenic | 50.0% |
| TCAACGGCACCCAAGTATGA+TGG | + | chr4_4:31359274-31359293 | Msa0677470:CDS | 50.0% | |
| CGAACATGTCTCCTCCAACA+TGG | - | chr4_4:31359306-31359325 | None:intergenic | 50.0% | |
| GAGCCATATAGGAGCTTGTG+TGG | + | chr4_4:31359792-31359811 | Msa0677470:intron | 50.0% | |
| AGCCCACACAAGCTCCTATA+TGG | - | chr4_4:31359798-31359817 | None:intergenic | 50.0% | |
| ! | CTCCTGCCTCCACAAACTTT+TGG | + | chr4_4:31359816-31359835 | Msa0677470:intron | 50.0% |
| TGCACACAACTCTGGTGGTA+AGG | + | chr4_4:31360957-31360976 | Msa0677470:CDS | 50.0% | |
| CGCACCTTAAAGGCAGAAGG+TGG | - | chr4_4:31355528-31355547 | None:intergenic | 55.0% | |
| CCACGCACCTTAAAGGCAGA+AGG | - | chr4_4:31355531-31355550 | None:intergenic | 55.0% | |
| !! | CCTTCTGCCTTTAAGGTGCG+TGG | + | chr4_4:31355528-31355547 | Msa0677470:intron | 55.0% |
| CGTCTATCCGATGTGGGACT+TGG | - | chr4_4:31357152-31357171 | None:intergenic | 55.0% | |
| GAGTCCCGTCTATCCGATGT+GGG | - | chr4_4:31357158-31357177 | None:intergenic | 55.0% | |
| AGAGTCCCGTCTATCCGATG+TGG | - | chr4_4:31357159-31357178 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr4_4:31357210-31357229 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | + | chr4_4:31357210-31357229 | Msa0677470:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr4_4:31357212-31357231 | Msa0677470:intron | 55.0% |
| AGAGCCTCTCCAAGATCCAC+TGG | + | chr4_4:31357272-31357291 | Msa0677470:intron | 55.0% | |
| GAGCCTCTCCAAGATCCACT+GGG | + | chr4_4:31357273-31357292 | Msa0677470:intron | 55.0% | |
| AGCGGAAACCTGATAGCAGG+TGG | - | chr4_4:31357299-31357318 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | - | chr4_4:31357345-31357364 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr4_4:31357345-31357364 | Msa0677470:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr4_4:31357352-31357371 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | - | chr4_4:31357357-31357376 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr4_4:31357354-31357373 | Msa0677470:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr4_4:31357355-31357374 | Msa0677470:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr4_4:31357356-31357375 | Msa0677470:intron | 55.0% |
| AGCGGAAACCTGATAGCAGG+TGG | - | chr4_4:31357299-31357318 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | - | chr4_4:31357345-31357364 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr4_4:31357345-31357364 | Msa0677470:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr4_4:31357352-31357371 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | - | chr4_4:31357357-31357376 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr4_4:31357354-31357373 | Msa0677470:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr4_4:31357355-31357374 | Msa0677470:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr4_4:31357356-31357375 | Msa0677470:intron | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | + | chr4_4:31357499-31357518 | Msa0677470:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | - | chr4_4:31357504-31357523 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | - | chr4_4:31357505-31357524 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | - | chr4_4:31357345-31357364 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr4_4:31357345-31357364 | Msa0677470:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr4_4:31357352-31357371 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | - | chr4_4:31357357-31357376 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr4_4:31357354-31357373 | Msa0677470:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr4_4:31357355-31357374 | Msa0677470:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr4_4:31357356-31357375 | Msa0677470:intron | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | + | chr4_4:31357499-31357518 | Msa0677470:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | - | chr4_4:31357504-31357523 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | - | chr4_4:31357505-31357524 | None:intergenic | 55.0% | |
| CTAGGGTGTGAGCAAGGAAG+AGG | + | chr4_4:31358592-31358611 | Msa0677470:intron | 55.0% | |
| GATGGCATCACCCATGTTGG+AGG | + | chr4_4:31359292-31359311 | Msa0677470:CDS | 55.0% | |
| GCACTCCTCACCTCACAAGC+CGG | + | chr4_4:31357202-31357221 | Msa0677470:intron | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr4_4:31357215-31357234 | None:intergenic | 60.0% |
| TGGCCCAGTGGATCTTGGAG+AGG | - | chr4_4:31357279-31357298 | None:intergenic | 60.0% | |
| !! | AATGGTGGGTGGCCCGATAG+CGG | - | chr4_4:31357317-31357336 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr4_4:31357353-31357372 | Msa0677470:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | - | chr4_4:31357358-31357377 | None:intergenic | 60.0% | |
| !! | AATGGTGGGTGGCCCGATAG+CGG | - | chr4_4:31357317-31357336 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr4_4:31357353-31357372 | Msa0677470:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | - | chr4_4:31357358-31357377 | None:intergenic | 60.0% | |
| ! | GGGCTTGGTTCGTGGACATC+AGG | - | chr4_4:31357525-31357544 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr4_4:31357353-31357372 | Msa0677470:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | - | chr4_4:31357358-31357377 | None:intergenic | 60.0% | |
| GGGTGTGAGCAAGGAAGAGG+AGG | + | chr4_4:31358595-31358614 | Msa0677470:intron | 60.0% | |
| AGACAGGGGCGGAGCCATAT+AGG | + | chr4_4:31359781-31359800 | Msa0677470:intron | 60.0% | |
| GCAGGTGGCCCAGTGGATCT+TGG | - | chr4_4:31357284-31357303 | None:intergenic | 65.0% | |
| CCTGATAGCAGGTGGCCCAG+TGG | - | chr4_4:31357291-31357310 | None:intergenic | 65.0% | |
| CCACTGGGCCACCTGCTATC+AGG | + | chr4_4:31357288-31357307 | Msa0677470:intron | 65.0% | |
| GCAGGTGGCCCAGTCGATGT+GGG | - | chr4_4:31357394-31357413 | None:intergenic | 65.0% | |
| AGCAGGTGGCCCAGTCGATG+TGG | - | chr4_4:31357395-31357414 | None:intergenic | 65.0% | |
| CGACTGGGCCACCTGCTATC+AGG | + | chr4_4:31357398-31357417 | Msa0677470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 31355498 | 31361409 | 31355498 | ID=Msa0677470;Name=Msa0677470 |
| chr4_4 | mRNA | 31355498 | 31361409 | 31355498 | ID=Msa0677470-mRNA-1;Parent=Msa0677470;Name=Msa0677470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|0.66|1|1|3|320|369 |
| chr4_4 | exon | 31355498 | 31355542 | 31355498 | ID=Msa0677470-mRNA-1:exon:7791;Parent=Msa0677470-mRNA-1 |
| chr4_4 | exon | 31358596 | 31359360 | 31358596 | ID=Msa0677470-mRNA-1:exon:7792;Parent=Msa0677470-mRNA-1 |
| chr4_4 | exon | 31360790 | 31361409 | 31360790 | ID=Msa0677470-mRNA-1:exon:7793;Parent=Msa0677470-mRNA-1 |
| chr4_4 | CDS | 31355498 | 31355542 | 31355498 | ID=Msa0677470-mRNA-1:cds;Parent=Msa0677470-mRNA-1 |
| chr4_4 | CDS | 31358596 | 31359360 | 31358596 | ID=Msa0677470-mRNA-1:cds;Parent=Msa0677470-mRNA-1 |
| chr4_4 | CDS | 31360790 | 31361089 | 31360790 | ID=Msa0677470-mRNA-1:cds;Parent=Msa0677470-mRNA-1 |
| chr4_4 | three_prime_UTR | 31361090 | 31361409 | 31361090 | ID=Msa0677470-mRNA-1:three_prime_utr;Parent=Msa0677470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
